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PMC:1142324 / 16206-16770 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T4660 0-3 DT denotes The
T4661 22-31 NNS denotes fragments
T4662 4-6 CD denotes 18
T4663 7-9 NN denotes kb
T4664 6-7 HYPH denotes -
T4665 10-17 JJ denotes genomic
T4666 18-21 NN denotes DNA
T4667 88-97 VBN denotes amplified
T4668 32-40 VBG denotes covering
T4669 41-46 NNS denotes exons
T4670 47-48 CD denotes 5
T4671 48-50 , denotes ,
T4672 50-51 CD denotes 6
T4673 51-53 , denotes ,
T4674 53-54 CD denotes 7
T4675 54-56 , denotes ,
T4676 56-57 CD denotes 8
T4677 58-61 CC denotes and
T4678 62-63 CD denotes 9
T4679 64-66 IN denotes of
T4680 67-70 DT denotes the
T4681 78-82 NN denotes gene
T4682 71-77 NN denotes Adam22
T4683 83-87 VBD denotes were
T4684 98-102 IN denotes from
T4685 103-108 NN denotes C57BL
T4686 119-122 NN denotes DNA
T4687 108-109 HYPH denotes /
T4688 109-110 CD denotes 6
T4689 111-118 JJ denotes genomic
T4690 123-125 IN denotes by
T4691 126-129 NN denotes PCR
T4692 130-135 VBG denotes using
T4693 136-142 NNP denotes Expand
T4694 162-165 NN denotes mix
T4695 143-145 NNP denotes Hi
T4696 146-154 NNP denotes Fidelity
T4697 145-146 HYPH denotes -
T4698 155-161 NN denotes enzyme
T4699 166-167 -LRB- denotes (
T4700 173-184 NNP denotes Diagnostics
T4701 167-172 NNP denotes Roche
T4702 184-185 -RRB- denotes )
T4703 186-189 CC denotes and
T4704 190-197 NNS denotes primers
T4705 198-206 VBN denotes designed
T4706 207-210 IN denotes for
T4707 211-215 DT denotes each
T4708 216-220 NN denotes exon
T4709 220-221 . denotes .
T4710 221-334 sentence denotes To generate a mutation in the mouse Adam22 gene, we inserted the PGKneo cassette into exon 8 of the Adam22 gene.
T4711 222-224 TO denotes To
T4712 225-233 VB denotes generate
T4713 274-282 VBD denotes inserted
T4714 234-235 DT denotes a
T4715 236-244 NN denotes mutation
T4716 245-247 IN denotes in
T4717 248-251 DT denotes the
T4718 265-269 NN denotes gene
T4719 252-257 NN denotes mouse
T4720 258-264 NN denotes Adam22
T4721 269-271 , denotes ,
T4722 271-273 PRP denotes we
T4723 283-286 DT denotes the
T4724 294-302 NN denotes cassette
T4725 287-293 NN denotes PGKneo
T4726 303-307 IN denotes into
T4727 308-312 NN denotes exon
T4728 313-314 CD denotes 8
T4729 315-317 IN denotes of
T4730 318-321 DT denotes the
T4731 329-333 NN denotes gene
T4732 322-328 NN denotes Adam22
T4733 333-334 . denotes .
T4734 334-564 sentence denotes The final targeting construct consisted of a 10.5-kb genomic DNA fragment that was interrupted by the insertion of the PGKneo cassette and contained a MC1/TK cassette as a negative selection marker against random integration [5].
T4735 335-338 DT denotes The
T4736 355-364 NN denotes construct
T4737 339-344 JJ denotes final
T4738 345-354 NN denotes targeting
T4739 365-374 VBD denotes consisted
T4740 375-377 IN denotes of
T4741 378-379 DT denotes a
T4742 400-408 NN denotes fragment
T4743 380-384 CD denotes 10.5
T4744 385-387 NN denotes kb
T4745 384-385 HYPH denotes -
T4746 388-395 JJ denotes genomic
T4747 396-399 NN denotes DNA
T4748 409-413 WDT denotes that
T4749 418-429 VBN denotes interrupted
T4750 414-417 VBD denotes was
T4751 430-432 IN denotes by
T4752 433-436 DT denotes the
T4753 437-446 NN denotes insertion
T4754 447-449 IN denotes of
T4755 450-453 DT denotes the
T4756 461-469 NN denotes cassette
T4757 454-460 NN denotes PGKneo
T4758 470-473 CC denotes and
T4759 474-483 VBD denotes contained
T4760 484-485 DT denotes a
T4761 493-501 NN denotes cassette
T4762 486-489 NN denotes MC1
T4763 490-492 NN denotes TK
T4764 489-490 HYPH denotes /
T4765 502-504 IN denotes as
T4766 505-506 DT denotes a
T4767 526-532 NN denotes marker
T4768 507-515 JJ denotes negative
T4769 516-525 NN denotes selection
T4770 533-540 IN denotes against
T4771 541-547 JJ denotes random
T4772 548-559 NN denotes integration
T4773 560-561 -LRB- denotes [
T4774 561-562 CD denotes 5
T4775 562-563 -RRB- denotes ]
T4776 563-564 . denotes .
R2903 T4660 T4661 det The,fragments
R2904 T4661 T4667 nsubjpass fragments,amplified
R2905 T4662 T4663 nummod 18,kb
R2906 T4663 T4661 nmod kb,fragments
R2907 T4664 T4663 punct -,kb
R2908 T4665 T4661 amod genomic,fragments
R2909 T4666 T4661 compound DNA,fragments
R2910 T4668 T4661 acl covering,fragments
R2911 T4669 T4670 nmod exons,5
R2912 T4670 T4668 dobj 5,covering
R2913 T4671 T4670 punct ", ",5
R2914 T4672 T4670 conj 6,5
R2915 T4673 T4672 punct ", ",6
R2916 T4674 T4672 conj 7,6
R2917 T4675 T4674 punct ", ",7
R2918 T4676 T4674 conj 8,7
R2919 T4677 T4676 cc and,8
R2920 T4678 T4676 conj 9,8
R2921 T4679 T4670 prep of,5
R2922 T4680 T4681 det the,gene
R2923 T4681 T4679 pobj gene,of
R2924 T4682 T4681 compound Adam22,gene
R2925 T4683 T4667 auxpass were,amplified
R2926 T4684 T4667 prep from,amplified
R2927 T4685 T4686 nmod C57BL,DNA
R2928 T4686 T4684 pobj DNA,from
R2929 T4687 T4685 punct /,C57BL
R2930 T4688 T4685 nummod 6,C57BL
R2931 T4689 T4686 amod genomic,DNA
R2932 T4690 T4667 prep by,amplified
R2933 T4691 T4690 pobj PCR,by
R2934 T4692 T4667 advcl using,amplified
R2935 T4693 T4694 compound Expand,mix
R2936 T4694 T4692 dobj mix,using
R2937 T4695 T4696 compound Hi,Fidelity
R2938 T4696 T4694 compound Fidelity,mix
R2939 T4697 T4696 punct -,Fidelity
R2940 T4698 T4694 compound enzyme,mix
R2941 T4699 T4700 punct (,Diagnostics
R2942 T4700 T4694 parataxis Diagnostics,mix
R2943 T4701 T4700 compound Roche,Diagnostics
R2944 T4702 T4700 punct ),Diagnostics
R2945 T4703 T4694 cc and,mix
R2946 T4704 T4694 conj primers,mix
R2947 T4705 T4704 acl designed,primers
R2948 T4706 T4705 prep for,designed
R2949 T4707 T4708 det each,exon
R2950 T4708 T4706 pobj exon,for
R2951 T4709 T4667 punct .,amplified
R2952 T4711 T4712 aux To,generate
R2953 T4712 T4713 advcl generate,inserted
R2954 T4714 T4715 det a,mutation
R2955 T4715 T4712 dobj mutation,generate
R2956 T4716 T4712 prep in,generate
R2957 T4717 T4718 det the,gene
R2958 T4718 T4716 pobj gene,in
R2959 T4719 T4718 compound mouse,gene
R2960 T4720 T4718 compound Adam22,gene
R2961 T4721 T4713 punct ", ",inserted
R2962 T4722 T4713 nsubj we,inserted
R2963 T4723 T4724 det the,cassette
R2964 T4724 T4713 dobj cassette,inserted
R2965 T4725 T4724 compound PGKneo,cassette
R2966 T4726 T4713 prep into,inserted
R2967 T4727 T4726 pobj exon,into
R2968 T4728 T4727 nummod 8,exon
R2969 T4729 T4727 prep of,exon
R2970 T4730 T4731 det the,gene
R2971 T4731 T4729 pobj gene,of
R2972 T4732 T4731 compound Adam22,gene
R2973 T4733 T4713 punct .,inserted
R2974 T4735 T4736 det The,construct
R2975 T4736 T4739 nsubj construct,consisted
R2976 T4737 T4736 amod final,construct
R2977 T4738 T4736 compound targeting,construct
R2978 T4740 T4739 prep of,consisted
R2979 T4741 T4742 det a,fragment
R2980 T4742 T4740 pobj fragment,of
R2981 T4743 T4744 nummod 10.5,kb
R2982 T4744 T4742 nmod kb,fragment
R2983 T4745 T4744 punct -,kb
R2984 T4746 T4747 amod genomic,DNA
R2985 T4747 T4742 compound DNA,fragment
R2986 T4748 T4749 dep that,interrupted
R2987 T4749 T4742 relcl interrupted,fragment
R2988 T4750 T4749 auxpass was,interrupted
R2989 T4751 T4749 agent by,interrupted
R2990 T4752 T4753 det the,insertion
R2991 T4753 T4751 pobj insertion,by
R2992 T4754 T4753 prep of,insertion
R2993 T4755 T4756 det the,cassette
R2994 T4756 T4754 pobj cassette,of
R2995 T4757 T4756 compound PGKneo,cassette
R2996 T4758 T4749 cc and,interrupted
R2997 T4759 T4749 conj contained,interrupted
R2998 T4760 T4761 det a,cassette
R2999 T4761 T4759 dobj cassette,contained
R3000 T4762 T4763 compound MC1,TK
R3001 T4763 T4761 compound TK,cassette
R3002 T4764 T4763 punct /,TK
R3003 T4765 T4759 prep as,contained
R3004 T4766 T4767 det a,marker
R3005 T4767 T4765 pobj marker,as
R3006 T4768 T4767 amod negative,marker
R3007 T4769 T4767 compound selection,marker
R3008 T4770 T4767 prep against,marker
R3009 T4771 T4772 amod random,integration
R3010 T4772 T4770 pobj integration,against
R3011 T4773 T4774 punct [,5
R3012 T4774 T4739 parataxis 5,consisted
R3013 T4775 T4774 punct ],5
R3014 T4776 T4739 punct .,consisted

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4621 8-9 CHEBI_SO_EXT:base denotes b
T4622 10-21 SO_EXT:genomic_DNA denotes genomic DNA
T4623 18-21 CHEBI_SO_EXT:DNA denotes DNA
T4624 41-46 SO_EXT:0000147 denotes exons
T4625 71-77 PR_EXT:000003718 denotes Adam22
T4626 78-82 SO_EXT:0000704 denotes gene
T4627 111-122 SO_EXT:genomic_DNA denotes genomic DNA
T4628 119-122 CHEBI_SO_EXT:DNA denotes DNA
T4629 155-161 CHEBI_GO_SO_EXT:enzyme denotes enzyme
T4630 162-165 CHEBI:60004 denotes mix
T4631 190-197 SO_EXT:0000112 denotes primers
T4632 216-220 SO_EXT:0000147 denotes exon
T4633 236-244 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T4634 252-257 NCBITaxon:10088 denotes mouse
T4635 258-264 PR_EXT:000003718 denotes Adam22
T4636 265-269 SO_EXT:0000704 denotes gene
T4637 274-282 SO_EXT:sequence_insertion_process denotes inserted
T4638 294-302 SO_EXT:0005853 denotes cassette
T4639 308-312 SO_EXT:0000147 denotes exon
T4640 322-328 PR_EXT:000003718 denotes Adam22
T4641 329-333 SO_EXT:0000704 denotes gene
T4642 355-364 SO_EXT:engineered_biological_sequence denotes construct
T4643 386-387 CHEBI_SO_EXT:base denotes b
T4644 388-399 SO_EXT:genomic_DNA denotes genomic DNA
T4645 396-399 CHEBI_SO_EXT:DNA denotes DNA
T4646 437-446 SO_EXT:sequence_insertion_entity_or_process denotes insertion
T4647 461-469 SO_EXT:0005853 denotes cassette
T4648 490-492 GO_PR_EXT:thymidine_kinase denotes TK
T4649 493-501 SO_EXT:0005853 denotes cassette
T4650 526-532 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4600 10-17 SO:0001026 denotes genomic
T4601 41-46 SO:0000147 denotes exons
T4602 71-77 PR:000003718 denotes Adam22
T4603 78-82 SO:0000704 denotes gene
T4604 111-118 SO:0001026 denotes genomic
T4605 162-165 CHEBI:60004 denotes mix
T4606 190-197 SO:0000112 denotes primers
T4607 216-220 SO:0000147 denotes exon
T4608 252-257 NCBITaxon:10088 denotes mouse
T4609 258-264 PR:000003718 denotes Adam22
T4610 265-269 SO:0000704 denotes gene
T4611 294-302 SO:0005853 denotes cassette
T4612 308-312 SO:0000147 denotes exon
T4613 322-328 PR:000003718 denotes Adam22
T4614 329-333 SO:0000704 denotes gene
T4615 388-395 SO:0001026 denotes genomic
T4616 461-469 SO:0005853 denotes cassette
T4617 493-501 SO:0005853 denotes cassette