> top > docs > PMC:1140370 > spans > 4641-5301 > annotations

PMC:1140370 / 4641-5301 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T1450 0-7 VBN denotes Labeled
T1451 28-33 NNS denotes rNTPs
T1452 8-11 CC denotes and
T1453 12-21 JJ denotes unlabeled
T1454 22-27 NNS denotes dNTPs
T1455 27-28 HYPH denotes /
T1456 53-62 VBN denotes purchased
T1457 34-37 CC denotes and
T1458 38-47 NN denotes Sequenase
T1459 48-52 VBD denotes were
T1460 63-67 IN denotes from
T1461 68-76 NNP denotes Amersham
T1462 77-86 NNP denotes Pharmacia
T1463 86-87 . denotes .
T1464 87-314 sentence denotes M13mp18 and M13mp19 single-stranded circular DNA, T4 polynucleotide kinase, DNase I and the Klenow fragment were from TAKARA, Nuclease P1 was from Roche, and anti-FLAG M2 Ab (antibody)-agarose and FLAG peptide were from Sigma.
T1465 88-95 NN denotes M13mp18
T1466 133-136 NN denotes DNA
T1467 96-99 CC denotes and
T1468 100-107 NN denotes M13mp19
T1469 108-114 JJ denotes single
T1470 115-123 VBN denotes stranded
T1471 114-115 HYPH denotes -
T1472 124-132 JJ denotes circular
T1473 196-200 VBD denotes were
T1474 136-138 , denotes ,
T1475 138-140 NN denotes T4
T1476 156-162 NN denotes kinase
T1477 141-155 NN denotes polynucleotide
T1478 162-164 , denotes ,
T1479 164-169 NN denotes DNase
T1480 170-171 CD denotes I
T1481 172-175 CC denotes and
T1482 176-179 DT denotes the
T1483 187-195 NN denotes fragment
T1484 180-186 NN denotes Klenow
T1485 201-205 IN denotes from
T1486 206-212 NN denotes TAKARA
T1487 212-214 , denotes ,
T1488 214-222 NN denotes Nuclease
T1489 223-225 NN denotes P1
T1490 226-229 VBD denotes was
T1491 230-234 IN denotes from
T1492 235-240 NNP denotes Roche
T1493 240-242 , denotes ,
T1494 242-245 CC denotes and
T1495 246-255 JJ denotes anti-FLAG
T1496 273-280 NN denotes agarose
T1497 256-258 NN denotes M2
T1498 259-261 NN denotes Ab
T1499 263-271 NN denotes antibody
T1500 262-263 -LRB- denotes (
T1501 271-272 -RRB- denotes )
T1502 272-273 HYPH denotes -
T1503 298-302 VBD denotes were
T1504 281-284 CC denotes and
T1505 285-289 NN denotes FLAG
T1506 290-297 NN denotes peptide
T1507 303-307 IN denotes from
T1508 308-313 NNP denotes Sigma
T1509 313-314 . denotes .
T1510 314-399 sentence denotes SV40 T-antigen was purified from baculovirus-infected insect cells as reported (22).
T1511 315-319 NN denotes SV40
T1512 322-329 NN denotes antigen
T1513 320-321 NN denotes T
T1514 321-322 HYPH denotes -
T1515 334-342 VBN denotes purified
T1516 330-333 VBD denotes was
T1517 343-347 IN denotes from
T1518 348-359 NN denotes baculovirus
T1519 360-368 VBN denotes infected
T1520 359-360 HYPH denotes -
T1521 376-381 NNS denotes cells
T1522 369-375 NN denotes insect
T1523 382-384 IN denotes as
T1524 385-393 VBN denotes reported
T1525 394-395 -LRB- denotes (
T1526 395-397 CD denotes 22
T1527 397-398 -RRB- denotes )
T1528 398-399 . denotes .
T1529 399-458 sentence denotes PriA helicase protein was provided by Dr Taku Tanaka (23).
T1530 400-404 NN denotes PriA
T1531 405-413 NN denotes helicase
T1532 414-421 NN denotes protein
T1533 426-434 VBN denotes provided
T1534 422-425 VBD denotes was
T1535 435-437 IN denotes by
T1536 438-440 NNP denotes Dr
T1537 446-452 NNP denotes Tanaka
T1538 441-445 NNP denotes Taku
T1539 453-454 -LRB- denotes (
T1540 454-456 CD denotes 23
T1541 456-457 -RRB- denotes )
T1542 457-458 . denotes .
T1543 458-660 sentence denotes Oligonucleotides were purchased from Hokkaido system science Co., Ltd (Hokkaido, Japan), and were purified on polyacrylamide gel, followed by purification by Sep-Pak Plus C18 cartridge column (Waters).
T1544 459-475 NNS denotes Oligonucleotides
T1545 481-490 VBN denotes purchased
T1546 476-480 VBD denotes were
T1547 491-495 IN denotes from
T1548 496-504 NNP denotes Hokkaido
T1549 525-528 NNP denotes Ltd
T1550 505-511 NNP denotes system
T1551 512-519 NNP denotes science
T1552 520-523 NNP denotes Co.
T1553 523-525 , denotes ,
T1554 529-530 -LRB- denotes (
T1555 530-538 NNP denotes Hokkaido
T1556 538-540 , denotes ,
T1557 540-545 NNP denotes Japan
T1558 545-546 -RRB- denotes )
T1559 546-548 , denotes ,
T1560 548-551 CC denotes and
T1561 552-556 VBD denotes were
T1562 557-565 VBN denotes purified
T1563 566-568 IN denotes on
T1564 569-583 NN denotes polyacrylamide
T1565 584-587 NN denotes gel
T1566 587-589 , denotes ,
T1567 589-597 VBN denotes followed
T1568 598-600 IN denotes by
T1569 601-613 NN denotes purification
T1570 614-616 IN denotes by
T1571 617-620 NN denotes Sep
T1572 625-629 NN denotes Plus
T1573 620-621 HYPH denotes -
T1574 621-624 NN denotes Pak
T1575 634-643 NN denotes cartridge
T1576 630-633 NN denotes C18
T1577 644-650 NN denotes column
T1578 651-652 -LRB- denotes (
T1579 652-658 NNP denotes Waters
T1580 658-659 -RRB- denotes )
T1581 659-660 . denotes .
R872 T1450 T1451 amod Labeled,rNTPs
R873 T1451 T1456 nsubjpass rNTPs,purchased
R874 T1452 T1450 cc and,Labeled
R875 T1453 T1450 conj unlabeled,Labeled
R876 T1454 T1451 compound dNTPs,rNTPs
R877 T1455 T1451 punct /,rNTPs
R878 T1457 T1451 cc and,rNTPs
R879 T1458 T1451 conj Sequenase,rNTPs
R880 T1459 T1456 auxpass were,purchased
R881 T1460 T1456 prep from,purchased
R882 T1461 T1462 compound Amersham,Pharmacia
R883 T1462 T1460 pobj Pharmacia,from
R884 T1463 T1456 punct .,purchased
R885 T1465 T1466 nmod M13mp18,DNA
R886 T1466 T1473 nsubj DNA,were
R887 T1467 T1465 cc and,M13mp18
R888 T1468 T1465 conj M13mp19,M13mp18
R889 T1469 T1470 amod single,stranded
R890 T1470 T1466 amod stranded,DNA
R891 T1471 T1470 punct -,stranded
R892 T1472 T1466 amod circular,DNA
R893 T1474 T1466 punct ", ",DNA
R894 T1475 T1476 compound T4,kinase
R895 T1476 T1466 conj kinase,DNA
R896 T1477 T1476 compound polynucleotide,kinase
R897 T1478 T1476 punct ", ",kinase
R898 T1479 T1476 conj DNase,kinase
R899 T1480 T1479 nummod I,DNase
R900 T1481 T1479 cc and,DNase
R901 T1482 T1483 det the,fragment
R902 T1483 T1479 conj fragment,DNase
R903 T1484 T1483 compound Klenow,fragment
R904 T1485 T1473 prep from,were
R905 T1486 T1485 pobj TAKARA,from
R906 T1487 T1473 punct ", ",were
R907 T1488 T1489 compound Nuclease,P1
R908 T1489 T1490 nsubj P1,was
R909 T1490 T1473 conj was,were
R910 T1491 T1490 prep from,was
R911 T1492 T1491 pobj Roche,from
R912 T1493 T1490 punct ", ",was
R913 T1494 T1490 cc and,was
R914 T1495 T1496 amod anti-FLAG,agarose
R915 T1496 T1503 nsubj agarose,were
R916 T1497 T1496 nmod M2,agarose
R917 T1498 T1499 nmod Ab,antibody
R918 T1499 T1496 nmod antibody,agarose
R919 T1500 T1499 punct (,antibody
R920 T1501 T1496 punct ),agarose
R921 T1502 T1496 punct -,agarose
R922 T1503 T1490 conj were,was
R923 T1504 T1496 cc and,agarose
R924 T1505 T1506 compound FLAG,peptide
R925 T1506 T1496 conj peptide,agarose
R926 T1507 T1503 prep from,were
R927 T1508 T1507 pobj Sigma,from
R928 T1509 T1503 punct .,were
R929 T1511 T1512 compound SV40,antigen
R930 T1512 T1515 nsubjpass antigen,purified
R931 T1513 T1512 compound T,antigen
R932 T1514 T1512 punct -,antigen
R933 T1516 T1515 auxpass was,purified
R934 T1517 T1515 prep from,purified
R935 T1518 T1519 npadvmod baculovirus,infected
R936 T1519 T1521 amod infected,cells
R937 T1520 T1519 punct -,infected
R938 T1521 T1517 pobj cells,from
R939 T1522 T1521 compound insect,cells
R940 T1523 T1524 mark as,reported
R941 T1524 T1515 advcl reported,purified
R942 T1525 T1526 punct (,22
R943 T1526 T1524 parataxis 22,reported
R944 T1527 T1526 punct ),22
R945 T1528 T1515 punct .,purified
R946 T1530 T1531 compound PriA,helicase
R947 T1531 T1532 compound helicase,protein
R948 T1532 T1533 nsubjpass protein,provided
R949 T1534 T1533 auxpass was,provided
R950 T1535 T1533 agent by,provided
R951 T1536 T1537 compound Dr,Tanaka
R952 T1537 T1535 pobj Tanaka,by
R953 T1538 T1537 compound Taku,Tanaka
R954 T1539 T1540 punct (,23
R955 T1540 T1533 parataxis 23,provided
R956 T1541 T1540 punct ),23
R957 T1542 T1533 punct .,provided
R958 T1544 T1545 nsubjpass Oligonucleotides,purchased
R959 T1546 T1545 auxpass were,purchased
R960 T1547 T1545 prep from,purchased
R961 T1548 T1549 nmod Hokkaido,Ltd
R962 T1549 T1547 pobj Ltd,from
R963 T1550 T1549 nmod system,Ltd
R964 T1551 T1549 nmod science,Ltd
R965 T1552 T1549 nmod Co.,Ltd
R966 T1553 T1549 punct ", ",Ltd
R967 T1554 T1555 punct (,Hokkaido
R968 T1555 T1549 parataxis Hokkaido,Ltd
R969 T1556 T1555 punct ", ",Hokkaido
R970 T1557 T1555 npadvmod Japan,Hokkaido
R971 T1558 T1555 punct ),Hokkaido
R972 T1559 T1545 punct ", ",purchased
R973 T1560 T1545 cc and,purchased
R974 T1561 T1562 auxpass were,purified
R975 T1562 T1545 conj purified,purchased
R976 T1563 T1562 prep on,purified
R977 T1564 T1565 compound polyacrylamide,gel
R978 T1565 T1563 pobj gel,on
R979 T1566 T1562 punct ", ",purified
R980 T1567 T1562 advcl followed,purified
R981 T1568 T1567 agent by,followed
R982 T1569 T1568 pobj purification,by
R983 T1570 T1569 prep by,purification
R984 T1571 T1572 compound Sep,Plus
R985 T1572 T1575 compound Plus,cartridge
R986 T1573 T1572 punct -,Plus
R987 T1574 T1572 compound Pak,Plus
R988 T1575 T1577 compound cartridge,column
R989 T1576 T1575 compound C18,cartridge
R990 T1577 T1570 pobj column,by
R991 T1578 T1579 punct (,Waters
R992 T1579 T1577 parataxis Waters,column
R993 T1580 T1579 punct ),Waters
R994 T1581 T1545 punct .,purchased

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1431 145-155 CHEBI_SO_EXT:nucleotide denotes nucleotide
T1432 164-171 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T1433 214-222 GO_EXT:0004518 denotes Nuclease
T1435 263-271 GO:0042571 denotes antibody
T1436 273-280 CHEBI:2511 denotes agarose
T1437 290-297 CHEBI_SO_EXT:peptide_or_peptide_region denotes peptide
T1438 315-319 NCBITaxon:10633 denotes SV40
T1439 322-329 CHEBI_EXT:59132 denotes antigen
T1440 348-359 NCBITaxon:10442 denotes baculovirus
T1441 369-375 NCBITaxon:6960 denotes insect
T1442 376-381 CL_GO_EXT:cell denotes cells
T1443 400-404 PR_EXT:000023591 denotes PriA
T1444 405-413 GO_EXT:0004386 denotes helicase
T1445 414-421 CHEBI_PR_EXT:protein denotes protein
T1446 459-475 CHEBI_SO_EXT:oligonucleotide denotes Oligonucleotides
T1447 569-583 CHEBI_EXT:polyacrylamide denotes polyacrylamide
T1420 0-7 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes Labeled
T1421 14-21 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T1422 22-27 CHEBI_EXT:dNTP denotes dNTPs
T1423 28-33 CHEBI_EXT:ribonucleoside_triphosphate denotes rNTPs
T1424 108-123 _FRAGMENT denotes single-stranded
T1425 133-136 CHEBI_SO_EXT:single_stranded_DNA denotes DNA
T1426 124-132 SO:0000988 denotes circular
T1427 138-140 NCBITaxon:10665 denotes T4
T1428 141-155 CHEBI:15986 denotes polynucleotide
T1429 141-162 PR_EXT:000012924 denotes polynucleotide kinase
T1430 141-162 GO_EXT:0051731 denotes polynucleotide kinase
T1434 259-261 GO:0042571 denotes Ab
R871 T1425 T1424 _lexicallyChainedTo DNA,single-stranded

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1415 322-329 CHEBI:59132 denotes antigen
T1416 348-359 NCBITaxon:10442 denotes baculovirus
T1417 369-375 NCBITaxon:6960 denotes insect
T1418 400-404 PR:000023591 denotes PriA
T1406 108-123 SO:0000984 denotes single-stranded
T1407 124-132 SO:0000988 denotes circular
T1408 138-140 NCBITaxon:10665 denotes T4
T1409 141-155 CHEBI:15986 denotes polynucleotide
T1410 141-162 PR:000012924 denotes polynucleotide kinase
T1411 259-261 GO:0042571 denotes Ab
T1412 263-271 GO:0042571 denotes antibody
T1413 273-280 CHEBI:2511 denotes agarose
T1414 315-319 NCBITaxon:10633 denotes SV40

2_test

Id Subject Object Predicate Lexical cue
15917436-8390661-76775501 395-397 8390661 denotes 22
15917436-12151393-76775502 454-456 12151393 denotes 23