PMC:1140370 / 28748-29918
Annnotations
craft-sa-dev
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9105 | 0-10 | NN | denotes | Initiation |
T9106 | 33-43 | VBN | denotes | associated |
T9107 | 11-13 | IN | denotes | of |
T9108 | 14-17 | NN | denotes | DNA |
T9109 | 18-29 | NN | denotes | replication |
T9110 | 30-32 | VBZ | denotes | is |
T9111 | 44-48 | IN | denotes | with |
T9112 | 49-58 | VBN | denotes | localized |
T9113 | 59-66 | NN | denotes | melting |
T9114 | 67-69 | IN | denotes | of |
T9115 | 70-76 | NN | denotes | duplex |
T9116 | 77-80 | NN | denotes | DNA |
T9117 | 81-85 | JJ | denotes | near |
T9118 | 86-97 | NN | denotes | replication |
T9119 | 98-105 | NNS | denotes | origins |
T9120 | 105-106 | . | denotes | . |
T9121 | 106-225 | sentence | denotes | Helicases are loaded onto replication forks through the melted region, induced by initiator binding, in bacteria (32). |
T9122 | 107-116 | NNS | denotes | Helicases |
T9123 | 121-127 | VBN | denotes | loaded |
T9124 | 117-120 | VBP | denotes | are |
T9125 | 128-132 | IN | denotes | onto |
T9126 | 133-144 | NN | denotes | replication |
T9127 | 145-150 | NNS | denotes | forks |
T9128 | 151-158 | IN | denotes | through |
T9129 | 159-162 | DT | denotes | the |
T9130 | 170-176 | NN | denotes | region |
T9131 | 163-169 | VBN | denotes | melted |
T9132 | 176-178 | , | denotes | , |
T9133 | 178-185 | VBN | denotes | induced |
T9134 | 186-188 | IN | denotes | by |
T9135 | 189-198 | NN | denotes | initiator |
T9136 | 199-206 | NN | denotes | binding |
T9137 | 206-208 | , | denotes | , |
T9138 | 208-210 | IN | denotes | in |
T9139 | 211-219 | NNS | denotes | bacteria |
T9140 | 220-221 | -LRB- | denotes | ( |
T9141 | 221-223 | CD | denotes | 32 |
T9142 | 223-224 | -RRB- | denotes | ) |
T9143 | 224-225 | . | denotes | . |
T9144 | 225-356 | sentence | denotes | We previously reported that Mcm4/6/7 can be loaded onto a bubble-like structure and can serve as a DNA helicase at the forks (13). |
T9145 | 226-228 | PRP | denotes | We |
T9146 | 240-248 | VBD | denotes | reported |
T9147 | 229-239 | RB | denotes | previously |
T9148 | 249-253 | IN | denotes | that |
T9149 | 270-276 | VBN | denotes | loaded |
T9150 | 254-258 | NN | denotes | Mcm4 |
T9151 | 258-259 | HYPH | denotes | / |
T9152 | 259-260 | CD | denotes | 6 |
T9153 | 260-261 | HYPH | denotes | / |
T9154 | 261-262 | CD | denotes | 7 |
T9155 | 263-266 | MD | denotes | can |
T9156 | 267-269 | VB | denotes | be |
T9157 | 277-281 | IN | denotes | onto |
T9158 | 282-283 | DT | denotes | a |
T9159 | 296-305 | NN | denotes | structure |
T9160 | 284-290 | NN | denotes | bubble |
T9161 | 291-295 | JJ | denotes | like |
T9162 | 290-291 | HYPH | denotes | - |
T9163 | 306-309 | CC | denotes | and |
T9164 | 310-313 | MD | denotes | can |
T9165 | 314-319 | VB | denotes | serve |
T9166 | 320-322 | IN | denotes | as |
T9167 | 323-324 | DT | denotes | a |
T9168 | 329-337 | NN | denotes | helicase |
T9169 | 325-328 | NN | denotes | DNA |
T9170 | 338-340 | IN | denotes | at |
T9171 | 341-344 | DT | denotes | the |
T9172 | 345-350 | NNS | denotes | forks |
T9173 | 351-352 | -LRB- | denotes | ( |
T9174 | 352-354 | CD | denotes | 13 |
T9175 | 354-355 | -RRB- | denotes | ) |
T9176 | 355-356 | . | denotes | . |
T9177 | 356-550 | sentence | denotes | The ability of Mcm4/6/7 to unwind the bubble substrate but not the conventional duplex DNA (Figures 2 and 13) indicates that Mcm can be loaded through the single-stranded segment of the bubble. |
T9178 | 357-360 | DT | denotes | The |
T9179 | 361-368 | NN | denotes | ability |
T9180 | 467-476 | VBZ | denotes | indicates |
T9181 | 369-371 | IN | denotes | of |
T9182 | 372-376 | NN | denotes | Mcm4 |
T9183 | 376-377 | HYPH | denotes | / |
T9184 | 377-378 | CD | denotes | 6 |
T9185 | 378-379 | HYPH | denotes | / |
T9186 | 379-380 | CD | denotes | 7 |
T9187 | 381-383 | TO | denotes | to |
T9188 | 384-390 | VB | denotes | unwind |
T9189 | 391-394 | DT | denotes | the |
T9190 | 402-411 | NN | denotes | substrate |
T9191 | 395-401 | NN | denotes | bubble |
T9192 | 412-415 | CC | denotes | but |
T9193 | 416-419 | RB | denotes | not |
T9194 | 420-423 | DT | denotes | the |
T9195 | 444-447 | NN | denotes | DNA |
T9196 | 424-436 | JJ | denotes | conventional |
T9197 | 437-443 | NN | denotes | duplex |
T9198 | 448-449 | -LRB- | denotes | ( |
T9199 | 457-458 | CD | denotes | 2 |
T9200 | 449-456 | NNS | denotes | Figures |
T9201 | 459-462 | CC | denotes | and |
T9202 | 463-465 | CD | denotes | 13 |
T9203 | 465-466 | -RRB- | denotes | ) |
T9204 | 477-481 | IN | denotes | that |
T9205 | 493-499 | VBN | denotes | loaded |
T9206 | 482-485 | NN | denotes | Mcm |
T9207 | 486-489 | MD | denotes | can |
T9208 | 490-492 | VB | denotes | be |
T9209 | 500-507 | IN | denotes | through |
T9210 | 508-511 | DT | denotes | the |
T9211 | 528-535 | NN | denotes | segment |
T9212 | 512-518 | JJ | denotes | single |
T9213 | 519-527 | VBN | denotes | stranded |
T9214 | 518-519 | HYPH | denotes | - |
T9215 | 536-538 | IN | denotes | of |
T9216 | 539-542 | DT | denotes | the |
T9217 | 543-549 | NN | denotes | bubble |
T9218 | 549-550 | . | denotes | . |
T9219 | 550-703 | sentence | denotes | Furthermore, the Mcm4/6/7 complex displays marked preference for thymine-rich sequences within the single-stranded segment for helicase activation (13). |
T9220 | 551-562 | RB | denotes | Furthermore |
T9221 | 585-593 | VBZ | denotes | displays |
T9222 | 562-564 | , | denotes | , |
T9223 | 564-567 | DT | denotes | the |
T9224 | 577-584 | NN | denotes | complex |
T9225 | 568-572 | NN | denotes | Mcm4 |
T9226 | 572-573 | HYPH | denotes | / |
T9227 | 573-574 | CD | denotes | 6 |
T9228 | 574-575 | HYPH | denotes | / |
T9229 | 575-576 | CD | denotes | 7 |
T9230 | 594-600 | JJ | denotes | marked |
T9231 | 601-611 | NN | denotes | preference |
T9232 | 612-615 | IN | denotes | for |
T9233 | 616-623 | NN | denotes | thymine |
T9234 | 624-628 | JJ | denotes | rich |
T9235 | 623-624 | HYPH | denotes | - |
T9236 | 629-638 | NNS | denotes | sequences |
T9237 | 639-645 | IN | denotes | within |
T9238 | 646-649 | DT | denotes | the |
T9239 | 666-673 | NN | denotes | segment |
T9240 | 650-656 | JJ | denotes | single |
T9241 | 657-665 | VBN | denotes | stranded |
T9242 | 656-657 | HYPH | denotes | - |
T9243 | 674-677 | IN | denotes | for |
T9244 | 678-686 | NN | denotes | helicase |
T9245 | 687-697 | NN | denotes | activation |
T9246 | 698-699 | -LRB- | denotes | ( |
T9247 | 699-701 | CD | denotes | 13 |
T9248 | 701-702 | -RRB- | denotes | ) |
T9249 | 702-703 | . | denotes | . |
T9250 | 703-1011 | sentence | denotes | The results in this report indicate that helicase action of Mcm4/6/7 on synthetic bubbles may depend on the presence of an unpaired region of sufficient length (at least 40 nt), which may permit assembly of a double-hexameric complex on the substrate DNA, similar to SV40 T-antigen protein (Figure 2A) (21). |
T9251 | 704-707 | DT | denotes | The |
T9252 | 708-715 | NNS | denotes | results |
T9253 | 731-739 | VBP | denotes | indicate |
T9254 | 716-718 | IN | denotes | in |
T9255 | 719-723 | DT | denotes | this |
T9256 | 724-730 | NN | denotes | report |
T9257 | 740-744 | IN | denotes | that |
T9258 | 798-804 | VB | denotes | depend |
T9259 | 745-753 | NN | denotes | helicase |
T9260 | 754-760 | NN | denotes | action |
T9261 | 761-763 | IN | denotes | of |
T9262 | 764-768 | NN | denotes | Mcm4 |
T9263 | 768-769 | HYPH | denotes | / |
T9264 | 769-770 | CD | denotes | 6 |
T9265 | 770-771 | HYPH | denotes | / |
T9266 | 771-772 | CD | denotes | 7 |
T9267 | 773-775 | IN | denotes | on |
T9268 | 776-785 | JJ | denotes | synthetic |
T9269 | 786-793 | NNS | denotes | bubbles |
T9270 | 794-797 | MD | denotes | may |
T9271 | 805-807 | IN | denotes | on |
T9272 | 808-811 | DT | denotes | the |
T9273 | 812-820 | NN | denotes | presence |
T9274 | 821-823 | IN | denotes | of |
T9275 | 824-826 | DT | denotes | an |
T9276 | 836-842 | NN | denotes | region |
T9277 | 827-835 | JJ | denotes | unpaired |
T9278 | 843-845 | IN | denotes | of |
T9279 | 846-856 | JJ | denotes | sufficient |
T9280 | 857-863 | NN | denotes | length |
T9281 | 864-865 | -LRB- | denotes | ( |
T9282 | 877-879 | NN | denotes | nt |
T9283 | 865-867 | RB | denotes | at |
T9284 | 868-873 | RBS | denotes | least |
T9285 | 874-876 | CD | denotes | 40 |
T9286 | 879-880 | -RRB- | denotes | ) |
T9287 | 880-882 | , | denotes | , |
T9288 | 882-887 | WDT | denotes | which |
T9289 | 892-898 | VB | denotes | permit |
T9290 | 888-891 | MD | denotes | may |
T9291 | 899-907 | NN | denotes | assembly |
T9292 | 908-910 | IN | denotes | of |
T9293 | 911-912 | DT | denotes | a |
T9294 | 930-937 | NN | denotes | complex |
T9295 | 913-919 | JJ | denotes | double |
T9296 | 920-929 | JJ | denotes | hexameric |
T9297 | 919-920 | HYPH | denotes | - |
T9298 | 938-940 | IN | denotes | on |
T9299 | 941-944 | DT | denotes | the |
T9300 | 955-958 | NN | denotes | DNA |
T9301 | 945-954 | NN | denotes | substrate |
T9302 | 958-960 | , | denotes | , |
T9303 | 960-967 | JJ | denotes | similar |
T9304 | 968-970 | IN | denotes | to |
T9305 | 971-975 | NN | denotes | SV40 |
T9306 | 986-993 | NN | denotes | protein |
T9307 | 976-977 | NN | denotes | T |
T9308 | 978-985 | NN | denotes | antigen |
T9309 | 977-978 | HYPH | denotes | - |
T9310 | 994-995 | -LRB- | denotes | ( |
T9311 | 1002-1004 | NN | denotes | 2A |
T9312 | 995-1001 | NN | denotes | Figure |
T9313 | 1004-1005 | -RRB- | denotes | ) |
T9314 | 1006-1007 | -LRB- | denotes | ( |
T9315 | 1007-1009 | CD | denotes | 21 |
T9316 | 1009-1010 | -RRB- | denotes | ) |
T9317 | 1010-1011 | . | denotes | . |
T9318 | 1011-1170 | sentence | denotes | When one strand of the single-stranded segment in T-rich bubble was replaced by guanine-rich sequences, the efficiency of unwinding was significantly reduced. |
T9319 | 1012-1016 | WRB | denotes | When |
T9320 | 1080-1088 | VBN | denotes | replaced |
T9321 | 1017-1020 | CD | denotes | one |
T9322 | 1021-1027 | NN | denotes | strand |
T9323 | 1028-1030 | IN | denotes | of |
T9324 | 1031-1034 | DT | denotes | the |
T9325 | 1051-1058 | NN | denotes | segment |
T9326 | 1035-1041 | JJ | denotes | single |
T9327 | 1042-1050 | VBN | denotes | stranded |
T9328 | 1041-1042 | HYPH | denotes | - |
T9329 | 1059-1061 | IN | denotes | in |
T9330 | 1062-1063 | NN | denotes | T |
T9331 | 1064-1068 | JJ | denotes | rich |
T9332 | 1063-1064 | HYPH | denotes | - |
T9333 | 1069-1075 | NN | denotes | bubble |
T9334 | 1076-1079 | VBD | denotes | was |
T9335 | 1162-1169 | VBN | denotes | reduced |
T9336 | 1089-1091 | IN | denotes | by |
T9337 | 1092-1099 | NN | denotes | guanine |
T9338 | 1100-1104 | JJ | denotes | rich |
T9339 | 1099-1100 | HYPH | denotes | - |
T9340 | 1105-1114 | NNS | denotes | sequences |
T9341 | 1114-1116 | , | denotes | , |
T9342 | 1116-1119 | DT | denotes | the |
T9343 | 1120-1130 | NN | denotes | efficiency |
T9344 | 1131-1133 | IN | denotes | of |
T9345 | 1134-1143 | NN | denotes | unwinding |
T9346 | 1144-1147 | VBD | denotes | was |
T9347 | 1148-1161 | RB | denotes | significantly |
T9348 | 1169-1170 | . | denotes | . |
R6012 | T9105 | T9106 | nsubjpass | Initiation,associated |
R6013 | T9107 | T9105 | prep | of,Initiation |
R6014 | T9108 | T9109 | compound | DNA,replication |
R6015 | T9109 | T9107 | pobj | replication,of |
R6016 | T9110 | T9106 | auxpass | is,associated |
R6017 | T9111 | T9106 | prep | with,associated |
R6018 | T9112 | T9113 | amod | localized,melting |
R6019 | T9113 | T9111 | pobj | melting,with |
R6020 | T9114 | T9113 | prep | of,melting |
R6021 | T9115 | T9116 | compound | duplex,DNA |
R6022 | T9116 | T9114 | pobj | DNA,of |
R6023 | T9117 | T9113 | amod | near,melting |
R6024 | T9118 | T9119 | compound | replication,origins |
R6025 | T9119 | T9117 | npadvmod | origins,near |
R6026 | T9120 | T9106 | punct | .,associated |
R6027 | T9122 | T9123 | nsubjpass | Helicases,loaded |
R6028 | T9124 | T9123 | auxpass | are,loaded |
R6029 | T9125 | T9123 | prep | onto,loaded |
R6030 | T9126 | T9127 | compound | replication,forks |
R6031 | T9127 | T9125 | pobj | forks,onto |
R6032 | T9128 | T9123 | prep | through,loaded |
R6033 | T9129 | T9130 | det | the,region |
R6034 | T9130 | T9128 | pobj | region,through |
R6035 | T9131 | T9130 | amod | melted,region |
R6036 | T9132 | T9130 | punct | ", ",region |
R6037 | T9133 | T9130 | acl | induced,region |
R6038 | T9134 | T9133 | prep | by,induced |
R6039 | T9135 | T9136 | compound | initiator,binding |
R6040 | T9136 | T9134 | pobj | binding,by |
R6041 | T9137 | T9123 | punct | ", ",loaded |
R6042 | T9138 | T9123 | prep | in,loaded |
R6043 | T9139 | T9138 | pobj | bacteria,in |
R6044 | T9140 | T9141 | punct | (,32 |
R6045 | T9141 | T9123 | parataxis | 32,loaded |
R6046 | T9142 | T9141 | punct | ),32 |
R6047 | T9143 | T9123 | punct | .,loaded |
R6048 | T9145 | T9146 | nsubj | We,reported |
R6049 | T9147 | T9146 | advmod | previously,reported |
R6050 | T9148 | T9149 | mark | that,loaded |
R6051 | T9149 | T9146 | ccomp | loaded,reported |
R6052 | T9150 | T9149 | nsubjpass | Mcm4,loaded |
R6053 | T9151 | T9150 | punct | /,Mcm4 |
R6054 | T9152 | T9150 | nummod | 6,Mcm4 |
R6055 | T9153 | T9150 | punct | /,Mcm4 |
R6056 | T9154 | T9150 | nummod | 7,Mcm4 |
R6057 | T9155 | T9149 | aux | can,loaded |
R6058 | T9156 | T9149 | auxpass | be,loaded |
R6059 | T9157 | T9149 | prep | onto,loaded |
R6060 | T9158 | T9159 | det | a,structure |
R6061 | T9159 | T9157 | pobj | structure,onto |
R6062 | T9160 | T9161 | npadvmod | bubble,like |
R6063 | T9161 | T9159 | amod | like,structure |
R6064 | T9162 | T9161 | punct | -,like |
R6065 | T9163 | T9146 | cc | and,reported |
R6066 | T9164 | T9165 | aux | can,serve |
R6067 | T9165 | T9146 | conj | serve,reported |
R6068 | T9166 | T9165 | prep | as,serve |
R6069 | T9167 | T9168 | det | a,helicase |
R6070 | T9168 | T9166 | pobj | helicase,as |
R6071 | T9169 | T9168 | compound | DNA,helicase |
R6072 | T9170 | T9165 | prep | at,serve |
R6073 | T9171 | T9172 | det | the,forks |
R6074 | T9172 | T9170 | pobj | forks,at |
R6075 | T9173 | T9174 | punct | (,13 |
R6076 | T9174 | T9165 | parataxis | 13,serve |
R6077 | T9175 | T9174 | punct | ),13 |
R6078 | T9176 | T9146 | punct | .,reported |
R6079 | T9178 | T9179 | det | The,ability |
R6080 | T9179 | T9180 | nsubj | ability,indicates |
R6081 | T9181 | T9179 | prep | of,ability |
R6082 | T9182 | T9181 | pobj | Mcm4,of |
R6083 | T9183 | T9182 | punct | /,Mcm4 |
R6084 | T9184 | T9182 | nummod | 6,Mcm4 |
R6085 | T9185 | T9182 | punct | /,Mcm4 |
R6086 | T9186 | T9182 | nummod | 7,Mcm4 |
R6087 | T9187 | T9188 | aux | to,unwind |
R6088 | T9188 | T9179 | acl | unwind,ability |
R6089 | T9189 | T9190 | det | the,substrate |
R6090 | T9190 | T9188 | dobj | substrate,unwind |
R6091 | T9191 | T9190 | compound | bubble,substrate |
R6092 | T9192 | T9190 | cc | but,substrate |
R6093 | T9193 | T9192 | neg | not,but |
R6094 | T9194 | T9195 | det | the,DNA |
R6095 | T9195 | T9190 | conj | DNA,substrate |
R6096 | T9196 | T9195 | amod | conventional,DNA |
R6097 | T9197 | T9195 | compound | duplex,DNA |
R6098 | T9198 | T9199 | punct | (,2 |
R6099 | T9199 | T9188 | parataxis | 2,unwind |
R6100 | T9200 | T9199 | nmod | Figures,2 |
R6101 | T9201 | T9199 | cc | and,2 |
R6102 | T9202 | T9199 | conj | 13,2 |
R6103 | T9203 | T9199 | punct | ),2 |
R6104 | T9204 | T9205 | mark | that,loaded |
R6105 | T9205 | T9180 | ccomp | loaded,indicates |
R6106 | T9206 | T9205 | nsubjpass | Mcm,loaded |
R6107 | T9207 | T9205 | aux | can,loaded |
R6108 | T9208 | T9205 | auxpass | be,loaded |
R6109 | T9209 | T9205 | prep | through,loaded |
R6110 | T9210 | T9211 | det | the,segment |
R6111 | T9211 | T9209 | pobj | segment,through |
R6112 | T9212 | T9213 | amod | single,stranded |
R6113 | T9213 | T9211 | amod | stranded,segment |
R6114 | T9214 | T9213 | punct | -,stranded |
R6115 | T9215 | T9211 | prep | of,segment |
R6116 | T9216 | T9217 | det | the,bubble |
R6117 | T9217 | T9215 | pobj | bubble,of |
R6118 | T9218 | T9180 | punct | .,indicates |
R6119 | T9220 | T9221 | advmod | Furthermore,displays |
R6120 | T9222 | T9221 | punct | ", ",displays |
R6121 | T9223 | T9224 | det | the,complex |
R6122 | T9224 | T9221 | nsubj | complex,displays |
R6123 | T9225 | T9224 | nmod | Mcm4,complex |
R6124 | T9226 | T9225 | punct | /,Mcm4 |
R6125 | T9227 | T9225 | nummod | 6,Mcm4 |
R6126 | T9228 | T9225 | punct | /,Mcm4 |
R6127 | T9229 | T9225 | nummod | 7,Mcm4 |
R6128 | T9230 | T9231 | amod | marked,preference |
R6129 | T9231 | T9221 | dobj | preference,displays |
R6130 | T9232 | T9231 | prep | for,preference |
R6131 | T9233 | T9234 | npadvmod | thymine,rich |
R6132 | T9234 | T9236 | amod | rich,sequences |
R6133 | T9235 | T9234 | punct | -,rich |
R6134 | T9236 | T9232 | pobj | sequences,for |
R6135 | T9237 | T9221 | prep | within,displays |
R6136 | T9238 | T9239 | det | the,segment |
R6137 | T9239 | T9237 | pobj | segment,within |
R6138 | T9240 | T9241 | amod | single,stranded |
R6139 | T9241 | T9239 | amod | stranded,segment |
R6140 | T9242 | T9241 | punct | -,stranded |
R6141 | T9243 | T9239 | prep | for,segment |
R6142 | T9244 | T9245 | compound | helicase,activation |
R6143 | T9245 | T9243 | pobj | activation,for |
R6144 | T9246 | T9247 | punct | (,13 |
R6145 | T9247 | T9221 | parataxis | 13,displays |
R6146 | T9248 | T9247 | punct | ),13 |
R6147 | T9249 | T9221 | punct | .,displays |
R6148 | T9251 | T9252 | det | The,results |
R6149 | T9252 | T9253 | nsubj | results,indicate |
R6150 | T9254 | T9252 | prep | in,results |
R6151 | T9255 | T9256 | det | this,report |
R6152 | T9256 | T9254 | pobj | report,in |
R6153 | T9257 | T9258 | mark | that,depend |
R6154 | T9258 | T9253 | ccomp | depend,indicate |
R6155 | T9259 | T9260 | compound | helicase,action |
R6156 | T9260 | T9258 | nsubj | action,depend |
R6157 | T9261 | T9260 | prep | of,action |
R6158 | T9262 | T9261 | pobj | Mcm4,of |
R6159 | T9263 | T9262 | punct | /,Mcm4 |
R6160 | T9264 | T9262 | nummod | 6,Mcm4 |
R6161 | T9265 | T9262 | punct | /,Mcm4 |
R6162 | T9266 | T9262 | nummod | 7,Mcm4 |
R6163 | T9267 | T9260 | prep | on,action |
R6164 | T9268 | T9269 | amod | synthetic,bubbles |
R6165 | T9269 | T9267 | pobj | bubbles,on |
R6166 | T9270 | T9258 | aux | may,depend |
R6167 | T9271 | T9258 | prep | on,depend |
R6168 | T9272 | T9273 | det | the,presence |
R6169 | T9273 | T9271 | pobj | presence,on |
R6170 | T9274 | T9273 | prep | of,presence |
R6171 | T9275 | T9276 | det | an,region |
R6172 | T9276 | T9274 | pobj | region,of |
R6173 | T9277 | T9276 | amod | unpaired,region |
R6174 | T9278 | T9276 | prep | of,region |
R6175 | T9279 | T9280 | amod | sufficient,length |
R6176 | T9280 | T9278 | pobj | length,of |
R6177 | T9281 | T9282 | punct | (,nt |
R6178 | T9282 | T9280 | parataxis | nt,length |
R6179 | T9283 | T9284 | advmod | at,least |
R6180 | T9284 | T9285 | advmod | least,40 |
R6181 | T9285 | T9282 | nummod | 40,nt |
R6182 | T9286 | T9282 | punct | ),nt |
R6183 | T9287 | T9276 | punct | ", ",region |
R6184 | T9288 | T9289 | dep | which,permit |
R6185 | T9289 | T9276 | relcl | permit,region |
R6186 | T9290 | T9289 | aux | may,permit |
R6187 | T9291 | T9289 | dobj | assembly,permit |
R6188 | T9292 | T9291 | prep | of,assembly |
R6189 | T9293 | T9294 | det | a,complex |
R6190 | T9294 | T9292 | pobj | complex,of |
R6191 | T9295 | T9296 | amod | double,hexameric |
R6192 | T9296 | T9294 | amod | hexameric,complex |
R6193 | T9297 | T9296 | punct | -,hexameric |
R6194 | T9298 | T9294 | prep | on,complex |
R6195 | T9299 | T9300 | det | the,DNA |
R6196 | T9300 | T9298 | pobj | DNA,on |
R6197 | T9301 | T9300 | compound | substrate,DNA |
R6198 | T9302 | T9294 | punct | ", ",complex |
R6199 | T9303 | T9294 | amod | similar,complex |
R6200 | T9304 | T9303 | prep | to,similar |
R6201 | T9305 | T9306 | compound | SV40,protein |
R6202 | T9306 | T9304 | pobj | protein,to |
R6203 | T9307 | T9308 | compound | T,antigen |
R6204 | T9308 | T9306 | compound | antigen,protein |
R6205 | T9309 | T9308 | punct | -,antigen |
R6206 | T9310 | T9311 | punct | (,2A |
R6207 | T9311 | T9304 | parataxis | 2A,to |
R6208 | T9312 | T9311 | compound | Figure,2A |
R6209 | T9313 | T9311 | punct | ),2A |
R6210 | T9314 | T9315 | punct | (,21 |
R6211 | T9315 | T9289 | parataxis | 21,permit |
R6212 | T9316 | T9315 | punct | ),21 |
R6213 | T9317 | T9253 | punct | .,indicate |
R6214 | T9319 | T9320 | advmod | When,replaced |
R6215 | T9320 | T9335 | advcl | replaced,reduced |
R6216 | T9321 | T9322 | nummod | one,strand |
R6217 | T9322 | T9320 | nsubjpass | strand,replaced |
R6218 | T9323 | T9322 | prep | of,strand |
R6219 | T9324 | T9325 | det | the,segment |
R6220 | T9325 | T9323 | pobj | segment,of |
R6221 | T9326 | T9327 | amod | single,stranded |
R6222 | T9327 | T9325 | amod | stranded,segment |
R6223 | T9328 | T9327 | punct | -,stranded |
R6224 | T9329 | T9322 | prep | in,strand |
R6225 | T9330 | T9331 | npadvmod | T,rich |
R6226 | T9331 | T9333 | amod | rich,bubble |
R6227 | T9332 | T9331 | punct | -,rich |
R6228 | T9333 | T9329 | pobj | bubble,in |
R6229 | T9334 | T9320 | auxpass | was,replaced |
R6230 | T9336 | T9320 | agent | by,replaced |
R6231 | T9337 | T9338 | npadvmod | guanine,rich |
R6232 | T9338 | T9340 | amod | rich,sequences |
R6233 | T9339 | T9338 | punct | -,rich |
R6234 | T9340 | T9336 | pobj | sequences,by |
R6235 | T9341 | T9335 | punct | ", ",reduced |
R6236 | T9342 | T9343 | det | the,efficiency |
R6237 | T9343 | T9335 | nsubjpass | efficiency,reduced |
R6238 | T9344 | T9343 | prep | of,efficiency |
R6239 | T9345 | T9344 | pobj | unwinding,of |
R6240 | T9346 | T9335 | auxpass | was,reduced |
R6241 | T9347 | T9335 | advmod | significantly,reduced |
R6242 | T9348 | T9335 | punct | .,reduced |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9012 | 0-29 | GO:0006270 | denotes | Initiation of DNA replication |
T9013 | 14-17 | CHEBI_SO_EXT:DNA | denotes | DNA |
T9014 | 49-58 | GO_PATO_EXT:biological_localization_process_or_quality | denotes | localized |
T9015 | 59-80 | GO:0032508 | denotes | melting of duplex DNA |
T9016 | 70-80 | CHEBI_SO_EXT:double_stranded_DNA | denotes | duplex DNA |
T9017 | 86-97 | GO:0006260 | denotes | replication |
T9018 | 86-105 | SO_EXT:0000296 | denotes | replication origins |
T9019 | 107-116 | GO_EXT:0004386 | denotes | Helicases |
T9020 | 133-144 | GO:0006260 | denotes | replication |
T9021 | 133-150 | GO:0005657 | denotes | replication forks |
T9022 | 163-169 | GO:0032508 | denotes | melted |
T9023 | 199-206 | CHEMINF_GO_EXT:chemical_binding_or_bond_formation | denotes | binding |
T9024 | 211-219 | NCBITaxon:2 | denotes | bacteria |
T9025 | 254-258 | PR_EXT:000010246 | denotes | Mcm4 |
T9026 | 254-262 | GO:0097373 | denotes | Mcm4/6/7 |
T9027 | 325-328 | CHEBI_SO_EXT:DNA | denotes | DNA |
T9028 | 325-337 | GO_EXT:0003678 | denotes | DNA helicase |
T9029 | 345-350 | GO:0005657 | denotes | forks |
T9030 | 372-376 | PR_EXT:000010246 | denotes | Mcm4 |
T9031 | 372-380 | GO:0097373 | denotes | Mcm4/6/7 |
T9032 | 437-447 | CHEBI_SO_EXT:double_stranded_DNA | denotes | duplex DNA |
T9033 | 482-485 | GO:0042555 | denotes | Mcm |
T9034 | 512-527 | SO:0000984 | denotes | single-stranded |
T9035 | 568-572 | PR_EXT:000010246 | denotes | Mcm4 |
T9036 | 568-584 | GO:0097373 | denotes | Mcm4/6/7 complex |
T9037 | 616-623 | CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group | denotes | thymine |
T9038 | 629-638 | SO_EXT:biological_sequence | denotes | sequences |
T9039 | 650-665 | SO:0000984 | denotes | single-stranded |
T9040 | 678-686 | GO_EXT:0004386 | denotes | helicase |
T9041 | 745-753 | GO_EXT:0004386 | denotes | helicase |
T9042 | 764-768 | PR_EXT:000010246 | denotes | Mcm4 |
T9043 | 764-772 | GO:0097373 | denotes | Mcm4/6/7 |
T9044 | 827-835 | SO:0000984 | denotes | unpaired |
T9045 | 877-879 | CHEBI_SO_EXT:nucleotide | denotes | nt |
T9047 | 899-910,930-937 | GO:0065003 | denotes | assembly of complex |
T9048 | 913-937 | GO_EXT:double_hexameric_macromolecular_complex | denotes | double-hexameric complex |
T9049 | 955-958 | CHEBI_SO_EXT:DNA | denotes | DNA |
T9050 | 971-975 | NCBITaxon:10633 | denotes | SV40 |
T9051 | 978-985 | CHEBI_EXT:59132 | denotes | antigen |
T9052 | 986-993 | CHEBI_PR_EXT:protein | denotes | protein |
T9053 | 1035-1050 | SO:0000984 | denotes | single-stranded |
T9054 | 1062-1063 | CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group | denotes | T |
T9055 | 1080-1088 | SO_EXT:sequence_substitution_process | denotes | replaced |
T9056 | 1092-1099 | CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group | denotes | guanine |
T9057 | 1105-1114 | SO_EXT:biological_sequence | denotes | sequences |
craft-ca-core-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T8960 | 0-29 | GO:0006270 | denotes | Initiation of DNA replication |
T8961 | 59-80 | GO:0032508 | denotes | melting of duplex DNA |
T8962 | 70-76 | SO:0000985 | denotes | duplex |
T8963 | 86-97 | GO:0006260 | denotes | replication |
T8964 | 86-105 | SO:0000296 | denotes | replication origins |
T8965 | 133-144 | GO:0006260 | denotes | replication |
T8966 | 133-150 | GO:0005657 | denotes | replication forks |
T8967 | 163-169 | GO:0032508 | denotes | melted |
T8968 | 211-219 | NCBITaxon:2 | denotes | bacteria |
T8969 | 254-258 | PR:000010246 | denotes | Mcm4 |
T8970 | 254-262 | GO:0097373 | denotes | Mcm4/6/7 |
T8971 | 345-350 | GO:0005657 | denotes | forks |
T8972 | 372-376 | PR:000010246 | denotes | Mcm4 |
T8973 | 372-380 | GO:0097373 | denotes | Mcm4/6/7 |
T8974 | 437-443 | SO:0000985 | denotes | duplex |
T8975 | 482-485 | GO:0042555 | denotes | Mcm |
T8976 | 512-527 | SO:0000984 | denotes | single-stranded |
T8977 | 568-572 | PR:000010246 | denotes | Mcm4 |
T8978 | 568-584 | GO:0097373 | denotes | Mcm4/6/7 complex |
T8979 | 650-665 | SO:0000984 | denotes | single-stranded |
T8980 | 764-768 | PR:000010246 | denotes | Mcm4 |
T8981 | 764-772 | GO:0097373 | denotes | Mcm4/6/7 |
T8982 | 827-835 | SO:0000984 | denotes | unpaired |
T8984 | 899-910,930-937 | GO:0065003 | denotes | assembly of complex |
T8985 | 971-975 | NCBITaxon:10633 | denotes | SV40 |
T8986 | 978-985 | CHEBI:59132 | denotes | antigen |
T8987 | 1035-1050 | SO:0000984 | denotes | single-stranded |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
15917436-2843291-76775532 | 221-223 | 2843291 | denotes | 32 |
15917436-14609960-76775533 | 352-354 | 14609960 | denotes | 13 |
15917436-14609960-76775534 | 699-701 | 14609960 | denotes | 13 |
15917436-9765408-76775535 | 1007-1009 | 9765408 | denotes | 21 |