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PMC:1140370 / 19258-20615 JSONTXT

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Id Subject Object Predicate Lexical cue
T5952 0-2 PRP denotes It
T5953 12-20 VBN denotes reported
T5954 3-6 VBZ denotes has
T5955 7-11 VBN denotes been
T5956 21-25 IN denotes that
T5957 50-57 JJ denotes unwound
T5958 26-29 DT denotes the
T5959 33-42 NN denotes extension
T5960 30-31 CD denotes 3
T5961 31-32 SYM denotes
T5962 32-33 HYPH denotes -
T5963 43-46 MD denotes can
T5964 47-49 VB denotes be
T5965 58-60 IN denotes by
T5966 61-64 DT denotes the
T5967 78-89 NN denotes homohexamer
T5968 65-73 JJ denotes archaeal
T5969 74-77 NN denotes Mcm
T5970 90-93 CC denotes but
T5971 94-97 RB denotes not
T5972 98-100 IN denotes by
T5973 101-108 NN denotes fission
T5974 131-140 NNS denotes complexes
T5975 109-112 CC denotes and
T5976 113-120 NN denotes budding
T5977 121-126 NN denotes yeast
T5978 127-130 NN denotes Mcm
T5979 141-142 -LRB- denotes (
T5980 148-150 CD denotes 27
T5981 142-144 CD denotes 14
T5982 144-145 , denotes ,
T5983 145-147 CD denotes 26
T5984 147-148 , denotes ,
T5985 150-151 -RRB- denotes )
T5986 151-152 . denotes .
T5987 152-332 sentence denotes We have constructed 3′-extension substrates containing poly(dT), poly(dA), poly(dC) and poly(dG) 3′-tails in order to examine whether mouse Mcm4/6/7 can displace these substrates.
T5988 153-155 PRP denotes We
T5989 161-172 VBN denotes constructed
T5990 156-160 VBP denotes have
T5991 173-174 CD denotes 3
T5992 176-185 NN denotes extension
T5993 174-175 SYM denotes
T5994 175-176 HYPH denotes -
T5995 186-196 NNS denotes substrates
T5996 197-207 VBG denotes containing
T5997 208-212 NN denotes poly
T5998 213-215 NN denotes dT
T5999 212-213 -LRB- denotes (
T6000 253-258 NNS denotes tails
T6001 215-216 -RRB- denotes )
T6002 216-218 , denotes ,
T6003 218-222 NN denotes poly
T6004 223-225 NN denotes dA
T6005 222-223 -LRB- denotes (
T6006 225-226 -RRB- denotes )
T6007 226-228 , denotes ,
T6008 228-232 NN denotes poly
T6009 233-235 NN denotes dC
T6010 232-233 -LRB- denotes (
T6011 235-236 -RRB- denotes )
T6012 237-240 CC denotes and
T6013 241-245 NN denotes poly
T6014 246-248 NN denotes dG
T6015 245-246 -LRB- denotes (
T6016 248-249 -RRB- denotes )
T6017 250-251 CD denotes 3
T6018 251-252 SYM denotes
T6019 252-253 HYPH denotes -
T6020 259-261 IN denotes in
T6021 262-267 NN denotes order
T6022 268-270 TO denotes to
T6023 271-278 VB denotes examine
T6024 279-286 IN denotes whether
T6025 306-314 VB denotes displace
T6026 287-292 NN denotes mouse
T6027 293-297 NN denotes Mcm4
T6028 297-298 HYPH denotes /
T6029 298-299 CD denotes 6
T6030 299-300 HYPH denotes /
T6031 300-301 CD denotes 7
T6032 302-305 MD denotes can
T6033 315-320 DT denotes these
T6034 321-331 NNS denotes substrates
T6035 331-332 . denotes .
T6036 332-483 sentence denotes We first found that Mcm4/6/7 binds to dT-, dC- and dG-3′-extension with similar affinity, and to dA-3′-extension with much lower affinity (Figure 5A).
T6037 333-335 PRP denotes We
T6038 342-347 VBD denotes found
T6039 336-341 RB denotes first
T6040 348-352 IN denotes that
T6041 362-367 VBZ denotes binds
T6042 353-357 NN denotes Mcm4
T6043 357-358 HYPH denotes /
T6044 358-359 CD denotes 6
T6045 359-360 HYPH denotes /
T6046 360-361 CD denotes 7
T6047 368-370 IN denotes to
T6048 371-373 NN denotes dT
T6049 390-399 NN denotes extension
T6050 373-374 HYPH denotes -
T6051 374-376 , denotes ,
T6052 376-378 NN denotes dC
T6053 378-379 HYPH denotes -
T6054 380-383 CC denotes and
T6055 384-386 NN denotes dG
T6056 386-387 HYPH denotes -
T6057 387-388 CD denotes 3
T6058 388-389 SYM denotes
T6059 389-390 HYPH denotes -
T6060 400-404 IN denotes with
T6061 405-412 JJ denotes similar
T6062 413-421 NN denotes affinity
T6063 421-423 , denotes ,
T6064 423-426 CC denotes and
T6065 427-429 IN denotes to
T6066 430-432 NN denotes dA
T6067 436-445 NN denotes extension
T6068 432-433 HYPH denotes -
T6069 433-434 CD denotes 3
T6070 434-435 SYM denotes
T6071 435-436 HYPH denotes -
T6072 446-450 IN denotes with
T6073 451-455 RB denotes much
T6074 456-461 JJR denotes lower
T6075 462-470 NN denotes affinity
T6076 471-472 -LRB- denotes (
T6077 479-481 NN denotes 5A
T6078 472-478 NN denotes Figure
T6079 481-482 -RRB- denotes )
T6080 482-483 . denotes .
T6081 483-614 sentence denotes This is consistent with the previous results that Mcm4/6/7 binds to 50mer oligo-dT, -dC and -dG, but not to a 50mer oligo-dA (13).
T6082 484-488 DT denotes This
T6083 489-491 VBZ denotes is
T6084 492-502 JJ denotes consistent
T6085 503-507 IN denotes with
T6086 508-511 DT denotes the
T6087 521-528 NNS denotes results
T6088 512-520 JJ denotes previous
T6089 529-533 IN denotes that
T6090 543-548 VBZ denotes binds
T6091 534-538 NN denotes Mcm4
T6092 538-539 HYPH denotes /
T6093 539-540 CD denotes 6
T6094 540-541 HYPH denotes /
T6095 541-542 CD denotes 7
T6096 549-551 IN denotes to
T6097 552-557 NN denotes 50mer
T6098 564-566 NN denotes dT
T6099 558-563 NN denotes oligo
T6100 563-564 HYPH denotes -
T6101 566-568 , denotes ,
T6102 568-569 HYPH denotes -
T6103 569-571 NN denotes dC
T6104 572-575 CC denotes and
T6105 576-577 HYPH denotes -
T6106 577-579 NN denotes dG
T6107 579-581 , denotes ,
T6108 581-584 CC denotes but
T6109 585-588 RB denotes not
T6110 589-591 IN denotes to
T6111 592-593 DT denotes a
T6112 606-608 NN denotes dA
T6113 594-599 NN denotes 50mer
T6114 600-605 NN denotes oligo
T6115 605-606 HYPH denotes -
T6116 609-610 -LRB- denotes (
T6117 610-612 CD denotes 13
T6118 612-613 -RRB- denotes )
T6119 613-614 . denotes .
T6120 614-782 sentence denotes We found that dT-tailed 3′-extension was displaced efficiently by Mcm 4/6/7 while almost no or very little activity was detected on other substrates (Figure 5B and C).
T6121 615-617 PRP denotes We
T6122 618-623 VBD denotes found
T6123 624-628 IN denotes that
T6124 656-665 VBN denotes displaced
T6125 629-631 NN denotes dT
T6126 632-638 VBN denotes tailed
T6127 631-632 HYPH denotes -
T6128 642-651 NN denotes extension
T6129 639-640 CD denotes 3
T6130 640-641 SYM denotes
T6131 641-642 HYPH denotes -
T6132 652-655 VBD denotes was
T6133 666-677 RB denotes efficiently
T6134 678-680 IN denotes by
T6135 681-684 NN denotes Mcm
T6136 685-686 CD denotes 4
T6137 686-687 HYPH denotes /
T6138 687-688 CD denotes 6
T6139 688-689 HYPH denotes /
T6140 689-690 CD denotes 7
T6141 691-696 IN denotes while
T6142 735-743 VBN denotes detected
T6143 697-703 RB denotes almost
T6144 704-706 DT denotes no
T6145 707-709 CC denotes or
T6146 710-714 RB denotes very
T6147 715-721 JJ denotes little
T6148 722-730 NN denotes activity
T6149 731-734 VBD denotes was
T6150 744-746 IN denotes on
T6151 747-752 JJ denotes other
T6152 753-763 NNS denotes substrates
T6153 764-765 -LRB- denotes (
T6154 772-774 NN denotes 5B
T6155 765-771 NN denotes Figure
T6156 775-778 CC denotes and
T6157 779-780 NN denotes C
T6158 780-781 -RRB- denotes )
T6159 781-782 . denotes .
T6160 782-896 sentence denotes This is in sharp contrast to yeast Mcm4/6/7 helicases which are not capable of unwinding 3′-extension substrates.
T6161 783-787 DT denotes This
T6162 788-790 VBZ denotes is
T6163 791-793 IN denotes in
T6164 794-799 JJ denotes sharp
T6165 800-808 NN denotes contrast
T6166 809-811 IN denotes to
T6167 812-817 NN denotes yeast
T6168 827-836 NNS denotes helicases
T6169 818-822 NN denotes Mcm4
T6170 822-823 HYPH denotes /
T6171 823-824 CD denotes 6
T6172 824-825 HYPH denotes /
T6173 825-826 CD denotes 7
T6174 837-842 WDT denotes which
T6175 843-846 VBP denotes are
T6176 847-850 RB denotes not
T6177 851-858 JJ denotes capable
T6178 859-861 IN denotes of
T6179 862-871 VBG denotes unwinding
T6180 872-873 CD denotes 3
T6181 875-884 NN denotes extension
T6182 873-874 SYM denotes
T6183 874-875 HYPH denotes -
T6184 885-895 NNS denotes substrates
T6185 895-896 . denotes .
T6186 896-1002 sentence denotes Furthermore, dT-tailed 5′-extension, to which Mcm4/6/7 could bind, was not displaced by the Mcm helicase.
T6187 897-908 RB denotes Furthermore
T6188 972-981 VBN denotes displaced
T6189 908-910 , denotes ,
T6190 910-912 NN denotes dT
T6191 913-919 VBN denotes tailed
T6192 912-913 HYPH denotes -
T6193 923-932 NN denotes extension
T6194 920-921 CD denotes 5
T6195 921-922 SYM denotes
T6196 922-923 HYPH denotes -
T6197 932-934 , denotes ,
T6198 934-936 IN denotes to
T6199 958-962 VB denotes bind
T6200 937-942 WDT denotes which
T6201 943-947 NN denotes Mcm4
T6202 947-948 HYPH denotes /
T6203 948-949 CD denotes 6
T6204 949-950 HYPH denotes /
T6205 950-951 CD denotes 7
T6206 952-957 MD denotes could
T6207 962-964 , denotes ,
T6208 964-967 VBD denotes was
T6209 968-971 RB denotes not
T6210 982-984 IN denotes by
T6211 985-988 DT denotes the
T6212 993-1001 NN denotes helicase
T6213 989-992 NN denotes Mcm
T6214 1001-1002 . denotes .
T6215 1002-1193 sentence denotes The addition of the 5′-tail to dT-tailed 3′-extension further stimulated the displacement (Figure 5D), confirming the previous report that the fork structures facilitate the helicase action.
T6216 1003-1006 DT denotes The
T6217 1007-1015 NN denotes addition
T6218 1065-1075 VBD denotes stimulated
T6219 1016-1018 IN denotes of
T6220 1019-1022 DT denotes the
T6221 1026-1030 NN denotes tail
T6222 1023-1024 CD denotes 5
T6223 1024-1025 SYM denotes
T6224 1025-1026 HYPH denotes -
T6225 1031-1033 IN denotes to
T6226 1034-1036 NN denotes dT
T6227 1037-1043 VBN denotes tailed
T6228 1036-1037 HYPH denotes -
T6229 1047-1056 NN denotes extension
T6230 1044-1045 CD denotes 3
T6231 1045-1046 SYM denotes
T6232 1046-1047 HYPH denotes -
T6233 1057-1064 RB denotes further
T6234 1076-1079 DT denotes the
T6235 1080-1092 NN denotes displacement
T6236 1093-1094 -LRB- denotes (
T6237 1101-1103 NN denotes 5D
T6238 1094-1100 NN denotes Figure
T6239 1103-1104 -RRB- denotes )
T6240 1104-1106 , denotes ,
T6241 1106-1116 VBG denotes confirming
T6242 1117-1120 DT denotes the
T6243 1130-1136 NN denotes report
T6244 1121-1129 JJ denotes previous
T6245 1137-1141 IN denotes that
T6246 1162-1172 VBP denotes facilitate
T6247 1142-1145 DT denotes the
T6248 1151-1161 NNS denotes structures
T6249 1146-1150 NN denotes fork
T6250 1173-1176 DT denotes the
T6251 1186-1192 NN denotes action
T6252 1177-1185 NN denotes helicase
T6253 1192-1193 . denotes .
T6254 1193-1357 sentence denotes Thus, these results further strengthen our conclusion that the mammalian Mcm helicase is generally activated by the thymine-stretch on the 3′-single-stranded tail.
T6255 1194-1198 RB denotes Thus
T6256 1222-1232 VB denotes strengthen
T6257 1198-1200 , denotes ,
T6258 1200-1205 DT denotes these
T6259 1206-1213 NNS denotes results
T6260 1214-1221 RB denotes further
T6261 1233-1236 PRP$ denotes our
T6262 1237-1247 NN denotes conclusion
T6263 1248-1252 IN denotes that
T6264 1293-1302 VBN denotes activated
T6265 1253-1256 DT denotes the
T6266 1271-1279 NN denotes helicase
T6267 1257-1266 JJ denotes mammalian
T6268 1267-1270 NN denotes Mcm
T6269 1280-1282 VBZ denotes is
T6270 1283-1292 RB denotes generally
T6271 1303-1305 IN denotes by
T6272 1306-1309 DT denotes the
T6273 1318-1325 NN denotes stretch
T6274 1310-1317 NN denotes thymine
T6275 1317-1318 HYPH denotes -
T6276 1326-1328 IN denotes on
T6277 1329-1332 DT denotes the
T6278 1352-1356 NN denotes tail
T6279 1333-1334 CD denotes 3
T6280 1334-1335 SYM denotes
T6281 1335-1336 HYPH denotes -
T6282 1336-1342 JJ denotes single
T6283 1343-1351 VBN denotes stranded
T6284 1342-1343 HYPH denotes -
T6285 1356-1357 . denotes .
R3984 T5952 T5953 nsubjpass It,reported
R3985 T5954 T5953 aux has,reported
R3986 T5955 T5953 auxpass been,reported
R3987 T5956 T5957 mark that,unwound
R3988 T5957 T5953 ccomp unwound,reported
R3989 T5958 T5959 det the,extension
R3990 T5959 T5957 nsubj extension,unwound
R3991 T5960 T5959 nummod 3,extension
R3992 T5961 T5960 punct ′,3
R3993 T5962 T5959 punct -,extension
R3994 T5963 T5957 aux can,unwound
R3995 T5964 T5957 aux be,unwound
R3996 T5965 T5957 agent by,unwound
R3997 T5966 T5967 det the,homohexamer
R3998 T5967 T5965 pobj homohexamer,by
R3999 T5968 T5967 amod archaeal,homohexamer
R4000 T5969 T5967 compound Mcm,homohexamer
R4001 T5970 T5957 cc but,unwound
R4002 T5971 T5957 conj not,unwound
R4003 T5972 T5971 agent by,not
R4004 T5973 T5974 nmod fission,complexes
R4005 T5974 T5972 pobj complexes,by
R4006 T5975 T5973 cc and,fission
R4007 T5976 T5973 conj budding,fission
R4008 T5977 T5974 compound yeast,complexes
R4009 T5978 T5974 compound Mcm,complexes
R4010 T5979 T5980 punct (,27
R4011 T5980 T5953 parataxis 27,reported
R4012 T5981 T5980 nummod 14,27
R4013 T5982 T5980 punct ",",27
R4014 T5983 T5980 nummod 26,27
R4015 T5984 T5980 punct ",",27
R4016 T5985 T5980 punct ),27
R4017 T5986 T5953 punct .,reported
R4018 T5988 T5989 nsubj We,constructed
R4019 T5990 T5989 aux have,constructed
R4020 T5991 T5992 nummod 3,extension
R4021 T5992 T5995 compound extension,substrates
R4022 T5993 T5991 punct ′,3
R4023 T5994 T5992 punct -,extension
R4024 T5995 T5989 dobj substrates,constructed
R4025 T5996 T5995 acl containing,substrates
R4026 T5997 T5998 nmod poly,dT
R4027 T5998 T6000 nmod dT,tails
R4028 T5999 T5998 punct (,dT
R4029 T6000 T5996 dobj tails,containing
R4030 T6001 T5998 punct ),dT
R4031 T6002 T5998 punct ", ",dT
R4032 T6003 T6004 nmod poly,dA
R4033 T6004 T5998 conj dA,dT
R4034 T6005 T6004 punct (,dA
R4035 T6006 T6004 punct ),dA
R4036 T6007 T6004 punct ", ",dA
R4037 T6008 T6009 nmod poly,dC
R4038 T6009 T6004 conj dC,dA
R4039 T6010 T6009 punct (,dC
R4040 T6011 T6009 punct ),dC
R4041 T6012 T6009 cc and,dC
R4042 T6013 T6014 nmod poly,dG
R4043 T6014 T6009 conj dG,dC
R4044 T6015 T6014 punct (,dG
R4045 T6016 T6014 punct ),dG
R4046 T6017 T6000 nummod 3,tails
R4047 T6018 T6017 punct ′,3
R4048 T6019 T6000 punct -,tails
R4049 T6020 T5989 prep in,constructed
R4050 T6021 T6020 pobj order,in
R4051 T6022 T6023 aux to,examine
R4052 T6023 T6021 acl examine,order
R4053 T6024 T6025 mark whether,displace
R4054 T6025 T6023 ccomp displace,examine
R4055 T6026 T6027 compound mouse,Mcm4
R4056 T6027 T6025 nsubj Mcm4,displace
R4057 T6028 T6027 punct /,Mcm4
R4058 T6029 T6027 nummod 6,Mcm4
R4059 T6030 T6027 punct /,Mcm4
R4060 T6031 T6027 nummod 7,Mcm4
R4061 T6032 T6025 aux can,displace
R4062 T6033 T6034 det these,substrates
R4063 T6034 T6025 dobj substrates,displace
R4064 T6035 T5989 punct .,constructed
R4065 T6037 T6038 nsubj We,found
R4066 T6039 T6038 advmod first,found
R4067 T6040 T6041 mark that,binds
R4068 T6041 T6038 ccomp binds,found
R4069 T6042 T6041 nsubj Mcm4,binds
R4070 T6043 T6042 punct /,Mcm4
R4071 T6044 T6042 nummod 6,Mcm4
R4072 T6045 T6042 punct /,Mcm4
R4073 T6046 T6042 nummod 7,Mcm4
R4074 T6047 T6041 prep to,binds
R4075 T6048 T6049 nmod dT,extension
R4076 T6049 T6047 pobj extension,to
R4077 T6050 T6048 punct -,dT
R4078 T6051 T6048 punct ", ",dT
R4079 T6052 T6048 conj dC,dT
R4080 T6053 T6052 punct -,dC
R4081 T6054 T6052 cc and,dC
R4082 T6055 T6052 conj dG,dC
R4083 T6056 T6049 punct -,extension
R4084 T6057 T6049 nummod 3,extension
R4085 T6058 T6057 punct ′,3
R4086 T6059 T6049 punct -,extension
R4087 T6060 T6041 prep with,binds
R4088 T6061 T6062 amod similar,affinity
R4089 T6062 T6060 pobj affinity,with
R4090 T6063 T6041 punct ", ",binds
R4091 T6064 T6041 cc and,binds
R4092 T6065 T6041 conj to,binds
R4093 T6066 T6067 nmod dA,extension
R4094 T6067 T6065 pobj extension,to
R4095 T6068 T6067 punct -,extension
R4096 T6069 T6067 nummod 3,extension
R4097 T6070 T6069 punct ′,3
R4098 T6071 T6067 punct -,extension
R4099 T6072 T6065 prep with,to
R4100 T6073 T6074 advmod much,lower
R4101 T6074 T6075 amod lower,affinity
R4102 T6075 T6072 pobj affinity,with
R4103 T6076 T6077 punct (,5A
R4104 T6077 T6065 parataxis 5A,to
R4105 T6078 T6077 compound Figure,5A
R4106 T6079 T6077 punct ),5A
R4107 T6080 T6038 punct .,found
R4108 T6082 T6083 nsubj This,is
R4109 T6084 T6083 acomp consistent,is
R4110 T6085 T6084 prep with,consistent
R4111 T6086 T6087 det the,results
R4112 T6087 T6085 pobj results,with
R4113 T6088 T6087 amod previous,results
R4114 T6089 T6090 mark that,binds
R4115 T6090 T6087 acl binds,results
R4116 T6091 T6090 nsubj Mcm4,binds
R4117 T6092 T6091 punct /,Mcm4
R4118 T6093 T6091 nummod 6,Mcm4
R4119 T6094 T6091 punct /,Mcm4
R4120 T6095 T6091 nummod 7,Mcm4
R4121 T6096 T6090 prep to,binds
R4122 T6097 T6098 compound 50mer,dT
R4123 T6098 T6096 pobj dT,to
R4124 T6099 T6098 compound oligo,dT
R4125 T6100 T6098 punct -,dT
R4126 T6101 T6098 punct ", ",dT
R4127 T6102 T6103 punct -,dC
R4128 T6103 T6098 conj dC,dT
R4129 T6104 T6103 cc and,dC
R4130 T6105 T6106 punct -,dG
R4131 T6106 T6103 conj dG,dC
R4132 T6107 T6096 punct ", ",to
R4133 T6108 T6096 cc but,to
R4134 T6109 T6108 neg not,but
R4135 T6110 T6096 conj to,to
R4136 T6111 T6112 det a,dA
R4137 T6112 T6110 pobj dA,to
R4138 T6113 T6112 compound 50mer,dA
R4139 T6114 T6112 compound oligo,dA
R4140 T6115 T6112 punct -,dA
R4141 T6116 T6117 punct (,13
R4142 T6117 T6083 parataxis 13,is
R4143 T6118 T6117 punct ),13
R4144 T6119 T6083 punct .,is
R4145 T6121 T6122 nsubj We,found
R4146 T6123 T6124 mark that,displaced
R4147 T6124 T6122 ccomp displaced,found
R4148 T6125 T6126 npadvmod dT,tailed
R4149 T6126 T6128 amod tailed,extension
R4150 T6127 T6126 punct -,tailed
R4151 T6128 T6124 nsubjpass extension,displaced
R4152 T6129 T6128 nummod 3,extension
R4153 T6130 T6129 punct ′,3
R4154 T6131 T6128 punct -,extension
R4155 T6132 T6124 auxpass was,displaced
R4156 T6133 T6124 advmod efficiently,displaced
R4157 T6134 T6124 agent by,displaced
R4158 T6135 T6134 pobj Mcm,by
R4159 T6136 T6135 nummod 4,Mcm
R4160 T6137 T6135 punct /,Mcm
R4161 T6138 T6135 nummod 6,Mcm
R4162 T6139 T6135 punct /,Mcm
R4163 T6140 T6135 nummod 7,Mcm
R4164 T6141 T6142 mark while,detected
R4165 T6142 T6124 advcl detected,displaced
R4166 T6143 T6144 advmod almost,no
R4167 T6144 T6142 nsubjpass no,detected
R4168 T6145 T6144 cc or,no
R4169 T6146 T6147 advmod very,little
R4170 T6147 T6148 nmod little,activity
R4171 T6148 T6144 conj activity,no
R4172 T6149 T6142 auxpass was,detected
R4173 T6150 T6142 prep on,detected
R4174 T6151 T6152 amod other,substrates
R4175 T6152 T6150 pobj substrates,on
R4176 T6153 T6154 punct (,5B
R4177 T6154 T6142 parataxis 5B,detected
R4178 T6155 T6154 compound Figure,5B
R4179 T6156 T6154 cc and,5B
R4180 T6157 T6154 conj C,5B
R4181 T6158 T6154 punct ),5B
R4182 T6159 T6122 punct .,found
R4183 T6161 T6162 nsubj This,is
R4184 T6163 T6162 prep in,is
R4185 T6164 T6165 amod sharp,contrast
R4186 T6165 T6163 pobj contrast,in
R4187 T6166 T6165 prep to,contrast
R4188 T6167 T6168 nmod yeast,helicases
R4189 T6168 T6166 pobj helicases,to
R4190 T6169 T6168 nmod Mcm4,helicases
R4191 T6170 T6169 punct /,Mcm4
R4192 T6171 T6169 nummod 6,Mcm4
R4193 T6172 T6169 punct /,Mcm4
R4194 T6173 T6169 nummod 7,Mcm4
R4195 T6174 T6175 dep which,are
R4196 T6175 T6168 relcl are,helicases
R4197 T6176 T6175 neg not,are
R4198 T6177 T6175 acomp capable,are
R4199 T6178 T6177 prep of,capable
R4200 T6179 T6178 pcomp unwinding,of
R4201 T6180 T6181 nummod 3,extension
R4202 T6181 T6184 compound extension,substrates
R4203 T6182 T6180 punct ′,3
R4204 T6183 T6181 punct -,extension
R4205 T6184 T6179 dobj substrates,unwinding
R4206 T6185 T6162 punct .,is
R4207 T6187 T6188 advmod Furthermore,displaced
R4208 T6189 T6188 punct ", ",displaced
R4209 T6190 T6191 npadvmod dT,tailed
R4210 T6191 T6193 amod tailed,extension
R4211 T6192 T6191 punct -,tailed
R4212 T6193 T6188 nsubjpass extension,displaced
R4213 T6194 T6193 nummod 5,extension
R4214 T6195 T6194 punct ′,5
R4215 T6196 T6193 punct -,extension
R4216 T6197 T6193 punct ", ",extension
R4217 T6198 T6199 prep to,bind
R4218 T6199 T6193 relcl bind,extension
R4219 T6200 T6198 pobj which,to
R4220 T6201 T6199 nsubj Mcm4,bind
R4221 T6202 T6201 punct /,Mcm4
R4222 T6203 T6201 nummod 6,Mcm4
R4223 T6204 T6201 punct /,Mcm4
R4224 T6205 T6201 nummod 7,Mcm4
R4225 T6206 T6199 aux could,bind
R4226 T6207 T6188 punct ", ",displaced
R4227 T6208 T6188 auxpass was,displaced
R4228 T6209 T6188 neg not,displaced
R4229 T6210 T6188 agent by,displaced
R4230 T6211 T6212 det the,helicase
R4231 T6212 T6210 pobj helicase,by
R4232 T6213 T6212 compound Mcm,helicase
R4233 T6214 T6188 punct .,displaced
R4234 T6216 T6217 det The,addition
R4235 T6217 T6218 nsubj addition,stimulated
R4236 T6219 T6217 prep of,addition
R4237 T6220 T6221 det the,tail
R4238 T6221 T6219 pobj tail,of
R4239 T6222 T6221 nummod 5,tail
R4240 T6223 T6222 punct ′,5
R4241 T6224 T6221 punct -,tail
R4242 T6225 T6217 prep to,addition
R4243 T6226 T6227 npadvmod dT,tailed
R4244 T6227 T6229 amod tailed,extension
R4245 T6228 T6227 punct -,tailed
R4246 T6229 T6225 pobj extension,to
R4247 T6230 T6229 nummod 3,extension
R4248 T6231 T6230 punct ′,3
R4249 T6232 T6229 punct -,extension
R4250 T6233 T6218 advmod further,stimulated
R4251 T6234 T6235 det the,displacement
R4252 T6235 T6218 dobj displacement,stimulated
R4253 T6236 T6237 punct (,5D
R4254 T6237 T6235 parataxis 5D,displacement
R4255 T6238 T6237 compound Figure,5D
R4256 T6239 T6237 punct ),5D
R4257 T6240 T6218 punct ", ",stimulated
R4258 T6241 T6218 advcl confirming,stimulated
R4259 T6242 T6243 det the,report
R4260 T6243 T6241 dobj report,confirming
R4261 T6244 T6243 amod previous,report
R4262 T6245 T6246 mark that,facilitate
R4263 T6246 T6243 acl facilitate,report
R4264 T6247 T6248 det the,structures
R4265 T6248 T6246 nsubj structures,facilitate
R4266 T6249 T6248 compound fork,structures
R4267 T6250 T6251 det the,action
R4268 T6251 T6246 dobj action,facilitate
R4269 T6252 T6251 compound helicase,action
R4270 T6253 T6218 punct .,stimulated
R4271 T6255 T6256 advmod Thus,strengthen
R4272 T6257 T6256 punct ", ",strengthen
R4273 T6258 T6259 det these,results
R4274 T6259 T6256 nsubj results,strengthen
R4275 T6260 T6256 advmod further,strengthen
R4276 T6261 T6262 poss our,conclusion
R4277 T6262 T6256 dobj conclusion,strengthen
R4278 T6263 T6264 mark that,activated
R4279 T6264 T6262 acl activated,conclusion
R4280 T6265 T6266 det the,helicase
R4281 T6266 T6264 nsubjpass helicase,activated
R4282 T6267 T6266 amod mammalian,helicase
R4283 T6268 T6266 compound Mcm,helicase
R4284 T6269 T6264 auxpass is,activated
R4285 T6270 T6264 advmod generally,activated
R4286 T6271 T6264 agent by,activated
R4287 T6272 T6273 det the,stretch
R4288 T6273 T6271 pobj stretch,by
R4289 T6274 T6273 compound thymine,stretch
R4290 T6275 T6273 punct -,stretch
R4291 T6276 T6273 prep on,stretch
R4292 T6277 T6278 det the,tail
R4293 T6278 T6276 pobj tail,on
R4294 T6279 T6278 nummod 3,tail
R4295 T6280 T6279 punct ′,3
R4296 T6281 T6278 punct -,tail
R4297 T6282 T6283 amod single,stranded
R4298 T6283 T6278 amod stranded,tail
R4299 T6284 T6283 punct -,stranded
R4300 T6285 T6256 punct .,strengthen

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5870 30-42 GO:0006272 denotes 3′-extension
T5871 65-73 NCBITaxon:2157 denotes archaeal
T5872 74-77 GO:0042555 denotes Mcm
T5873 82-89 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T5874 101-108 _FRAGMENT denotes fission
T5875 121-126 NCBITaxon:4894 denotes yeast
T5876 113-120 GO:0007114 denotes budding
T5877 113-126 NCBITaxon:4892 denotes budding yeast
T5878 127-140 GO:0042555 denotes Mcm complexes
T5879 173-185 GO:0006272 denotes 3′-extension
T5880 213-215 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5881 223-225 CHEBI_EXT:deoxyadenosine_nucleoside_or_nucleotide_residue denotes dA
T5882 233-235 CHEBI_EXT:deoxycytidine_nucleoside_or_nucleotide_residue denotes dC
T5883 246-248 CHEBI_EXT:deoxyguanosine_nucleoside_or_nucleotide_residue denotes dG
T5884 287-292 NCBITaxon:10088 denotes mouse
T5885 293-297 PR_EXT:000010246 denotes Mcm4
T5886 293-301 GO:0097373 denotes Mcm4/6/7
T5887 353-357 PR_EXT:000010246 denotes Mcm4
T5888 353-361 GO:0097373 denotes Mcm4/6/7
T5889 362-367 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5890 371-373 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5891 376-378 CHEBI_EXT:deoxycytidine_nucleoside_or_nucleotide_residue denotes dC
T5892 384-386 CHEBI_EXT:deoxyguanosine_nucleoside_or_nucleotide_residue denotes dG
T5893 387-399 GO:0006272 denotes 3′-extension
T5894 430-432 CHEBI_EXT:deoxyadenosine_nucleoside_or_nucleotide_residue denotes dA
T5895 433-445 GO:0006272 denotes 3′-extension
T5896 534-538 PR_EXT:000010246 denotes Mcm4
T5897 534-542 GO:0097373 denotes Mcm4/6/7
T5898 543-548 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5899 558-563 CHEBI_SO_EXT:oligonucleotide denotes oligo
T5900 564-566 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5901 569-571 CHEBI_EXT:deoxycytidine_nucleoside_or_nucleotide_residue denotes dC
T5902 577-579 CHEBI_EXT:deoxyguanosine_nucleoside_or_nucleotide_residue denotes dG
T5903 600-605 CHEBI_SO_EXT:oligonucleotide denotes oligo
T5904 606-608 CHEBI_EXT:deoxyadenosine_nucleoside_or_nucleotide_residue denotes dA
T5905 629-631 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5906 639-651 GO:0006272 denotes 3′-extension
T5907 681-686 PR_EXT:000010246 denotes Mcm 4
T5908 681-684 _FRAGMENT denotes Mcm
T5909 687-688 PR_EXT:000010248 denotes 6
T5910 689-690 PR_EXT:000010249 denotes 7
T5911 681-690 GO:0097373 denotes Mcm 4/6/7
T5912 812-817 NCBITaxon_EXT:yeast denotes yeast
T5913 818-822 PR_EXT:000010246 denotes Mcm4
T5914 818-826 GO:0097373 denotes Mcm4/6/7
T5915 827-836 GO_EXT:0004386 denotes helicases
T5916 872-884 GO:0006272 denotes 3′-extension
T5917 910-912 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5918 920-932 GO:0006273 denotes 5′-extension
T5919 943-947 PR_EXT:000010246 denotes Mcm4
T5920 943-951 GO:0097373 denotes Mcm4/6/7
T5921 958-962 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T5922 989-992 GO:0042555 denotes Mcm
T5923 993-1001 GO_EXT:0004386 denotes helicase
T5924 1034-1036 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5925 1044-1056 GO:0006272 denotes 3′-extension
T5926 1146-1150 GO:0005657 denotes fork
T5927 1177-1185 GO_EXT:0004386 denotes helicase
T5928 1257-1266 NCBITaxon:40674 denotes mammalian
T5929 1267-1270 GO:0042555 denotes Mcm
T5930 1271-1279 GO_EXT:0004386 denotes helicase
T5931 1310-1317 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T5932 1336-1351 SO:0000984 denotes single-stranded
R3964 T5875 T5874 _lexicallyChainedTo yeast,fission
R3965 T5909 T5908 _lexicallyChainedTo 6,Mcm
R3966 T5910 T5908 _lexicallyChainedTo 7,Mcm

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5830 30-42 GO:0006272 denotes 3′-extension
T5831 65-73 NCBITaxon:2157 denotes archaeal
T5832 74-77 GO:0042555 denotes Mcm
T5833 101-108 _FRAGMENT denotes fission
T5834 121-126 NCBITaxon:4894 denotes yeast
T5835 113-120 GO:0007114 denotes budding
T5836 113-126 NCBITaxon:4892 denotes budding yeast
T5837 127-140 GO:0042555 denotes Mcm complexes
T5838 173-185 GO:0006272 denotes 3′-extension
T5839 287-292 NCBITaxon:10088 denotes mouse
T5840 293-297 PR:000010246 denotes Mcm4
T5841 293-301 GO:0097373 denotes Mcm4/6/7
T5842 353-357 PR:000010246 denotes Mcm4
T5843 353-361 GO:0097373 denotes Mcm4/6/7
T5844 387-399 GO:0006272 denotes 3′-extension
T5845 433-445 GO:0006272 denotes 3′-extension
T5846 534-538 PR:000010246 denotes Mcm4
T5847 534-542 GO:0097373 denotes Mcm4/6/7
T5848 639-651 GO:0006272 denotes 3′-extension
T5849 681-686 PR:000010246 denotes Mcm 4
T5850 681-684 _FRAGMENT denotes Mcm
T5851 687-688 PR:000010248 denotes 6
T5852 689-690 PR:000010249 denotes 7
T5853 681-690 GO:0097373 denotes Mcm 4/6/7
T5854 818-822 PR:000010246 denotes Mcm4
T5855 818-826 GO:0097373 denotes Mcm4/6/7
T5856 872-884 GO:0006272 denotes 3′-extension
T5857 920-932 GO:0006273 denotes 5′-extension
T5858 943-947 PR:000010246 denotes Mcm4
T5859 943-951 GO:0097373 denotes Mcm4/6/7
T5860 989-992 GO:0042555 denotes Mcm
T5861 1044-1056 GO:0006272 denotes 3′-extension
T5862 1146-1150 GO:0005657 denotes fork
T5863 1257-1266 NCBITaxon:40674 denotes mammalian
T5864 1267-1270 GO:0042555 denotes Mcm
T5865 1336-1351 SO:0000984 denotes single-stranded
R3961 T5834 T5833 _lexicallyChainedTo yeast,fission
R3962 T5851 T5850 _lexicallyChainedTo 6,Mcm
R3963 T5852 T5850 _lexicallyChainedTo 7,Mcm

2_test

Id Subject Object Predicate Lexical cue
15917436-11136247-76775518 142-144 11136247 denotes 14
15917436-13679365-76775519 145-147 13679365 denotes 26
15917436-12975364-76775520 148-150 12975364 denotes 27
15917436-14609960-76775521 610-612 14609960 denotes 13