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PMC:1140370 / 15927-17346 JSONTXT

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Id Subject Object Predicate Lexical cue
T4762 0-9 JJ denotes Symmetric
T4763 10-17 NN denotes binding
T4764 59-67 VBZ denotes suggests
T4765 18-20 IN denotes of
T4766 21-24 DT denotes the
T4767 41-48 NN denotes hexamer
T4768 25-29 NN denotes Mcm4
T4769 29-30 HYPH denotes /
T4770 30-31 CD denotes 6
T4771 31-32 HYPH denotes /
T4772 32-33 CD denotes 7
T4773 34-40 JJ denotes double
T4774 49-51 IN denotes to
T4775 52-58 NN denotes bubble
T4776 68-72 IN denotes that
T4777 86-95 VBZ denotes catalyzes
T4778 73-77 DT denotes each
T4779 78-85 NN denotes hexamer
T4780 96-105 NN denotes unwinding
T4781 106-108 IN denotes of
T4782 109-112 CD denotes one
T4783 113-115 IN denotes of
T4784 116-119 DT denotes the
T4785 131-139 NNS denotes segments
T4786 120-123 CD denotes two
T4787 124-130 NN denotes duplex
T4788 139-140 . denotes .
T4789 140-236 sentence denotes We asked whether activation of both hexamers is required for unwinding of the bubble substrate.
T4790 141-143 PRP denotes We
T4791 144-149 VBD denotes asked
T4792 150-157 IN denotes whether
T4793 189-197 VBN denotes required
T4794 158-168 NN denotes activation
T4795 169-171 IN denotes of
T4796 172-176 DT denotes both
T4797 177-185 NNS denotes hexamers
T4798 186-188 VBZ denotes is
T4799 198-201 IN denotes for
T4800 202-211 NN denotes unwinding
T4801 212-214 IN denotes of
T4802 215-218 DT denotes the
T4803 226-235 NN denotes substrate
T4804 219-225 NN denotes bubble
T4805 235-236 . denotes .
T4806 236-383 sentence denotes The preferred bubble substrate which is efficiently unwound by Mcm4/6/7 contains thymine stretches on both strands of the single-stranded segment.
T4807 237-240 DT denotes The
T4808 258-267 NN denotes substrate
T4809 241-250 JJ denotes preferred
T4810 251-257 NN denotes bubble
T4811 309-317 VBZ denotes contains
T4812 268-273 WDT denotes which
T4813 289-296 VBN denotes unwound
T4814 274-276 VBZ denotes is
T4815 277-288 RB denotes efficiently
T4816 297-299 IN denotes by
T4817 300-304 NN denotes Mcm4
T4818 304-305 HYPH denotes /
T4819 305-306 CD denotes 6
T4820 306-307 HYPH denotes /
T4821 307-308 CD denotes 7
T4822 318-325 NN denotes thymine
T4823 326-335 NNS denotes stretches
T4824 336-338 IN denotes on
T4825 339-343 DT denotes both
T4826 344-351 NNS denotes strands
T4827 352-354 IN denotes of
T4828 355-358 DT denotes the
T4829 375-382 NN denotes segment
T4830 359-365 JJ denotes single
T4831 366-374 VBN denotes stranded
T4832 365-366 HYPH denotes -
T4833 382-383 . denotes .
T4834 383-615 sentence denotes We constructed a hetero-bubble (Bub66/T–G-rich) in which one strand is T-rich (same as Bub66/T-rich) and the other strand is G-rich (same as Bub66/G-rich) (13), and helicase assays were conducted with increasing amount of Mcm4/6/7.
T4835 384-386 PRP denotes We
T4836 387-398 VBD denotes constructed
T4837 399-400 DT denotes a
T4838 401-414 JJ denotes hetero-bubble
T4839 415-416 -LRB- denotes (
T4840 416-421 NN denotes Bub66
T4841 424-425 NN denotes G
T4842 421-422 HYPH denotes /
T4843 422-423 NN denotes T
T4844 423-424 HYPH denotes
T4845 425-426 HYPH denotes -
T4846 426-430 JJ denotes rich
T4847 430-431 -RRB- denotes )
T4848 432-434 IN denotes in
T4849 452-454 VBZ denotes is
T4850 435-440 WDT denotes which
T4851 441-444 CD denotes one
T4852 445-451 NN denotes strand
T4853 455-456 NN denotes T
T4854 457-461 JJ denotes rich
T4855 456-457 HYPH denotes -
T4856 462-463 -LRB- denotes (
T4857 463-467 JJ denotes same
T4858 468-470 IN denotes as
T4859 471-476 NN denotes Bub66
T4860 477-478 NN denotes T
T4861 476-477 HYPH denotes /
T4862 478-479 HYPH denotes -
T4863 479-483 JJ denotes rich
T4864 483-484 -RRB- denotes )
T4865 485-488 CC denotes and
T4866 489-492 DT denotes the
T4867 499-505 NN denotes strand
T4868 493-498 JJ denotes other
T4869 506-508 VBZ denotes is
T4870 509-510 NN denotes G
T4871 511-515 JJ denotes rich
T4872 510-511 HYPH denotes -
T4873 516-517 -LRB- denotes (
T4874 517-521 JJ denotes same
T4875 522-524 IN denotes as
T4876 525-530 NN denotes Bub66
T4877 531-532 NN denotes G
T4878 530-531 HYPH denotes /
T4879 532-533 HYPH denotes -
T4880 533-537 JJ denotes rich
T4881 537-538 -RRB- denotes )
T4882 539-540 -LRB- denotes (
T4883 540-542 CD denotes 13
T4884 542-543 -RRB- denotes )
T4885 543-545 , denotes ,
T4886 545-548 CC denotes and
T4887 549-557 NN denotes helicase
T4888 558-564 NNS denotes assays
T4889 570-579 VBN denotes conducted
T4890 565-569 VBD denotes were
T4891 580-584 IN denotes with
T4892 585-595 VBG denotes increasing
T4893 596-602 NN denotes amount
T4894 603-605 IN denotes of
T4895 606-610 NN denotes Mcm4
T4896 610-611 HYPH denotes /
T4897 611-612 CD denotes 6
T4898 612-613 HYPH denotes /
T4899 613-614 CD denotes 7
T4900 614-615 . denotes .
T4901 615-704 sentence denotes Only weak unwinding was detected on this substrate compared to Bub66/T-rich (Figure 3A).
T4902 616-620 RB denotes Only
T4903 626-635 NN denotes unwinding
T4904 621-625 JJ denotes weak
T4905 640-648 VBN denotes detected
T4906 636-639 VBD denotes was
T4907 649-651 IN denotes on
T4908 652-656 DT denotes this
T4909 657-666 NN denotes substrate
T4910 667-675 VBN denotes compared
T4911 676-678 IN denotes to
T4912 679-684 NN denotes Bub66
T4913 685-686 NN denotes T
T4914 684-685 HYPH denotes /
T4915 686-687 HYPH denotes -
T4916 687-691 JJ denotes rich
T4917 692-693 -LRB- denotes (
T4918 700-702 NN denotes 3A
T4919 693-699 NN denotes Figure
T4920 702-703 -RRB- denotes )
T4921 703-704 . denotes .
T4922 704-895 sentence denotes Since Mcm4/6/7 can bind to Bub66/T–G-rich and forms a double hexameric complex (data not shown), the defective unwinding is not due to inefficient loading of the helicase onto the substrate.
T4923 705-710 IN denotes Since
T4924 724-728 VB denotes bind
T4925 711-715 NN denotes Mcm4
T4926 715-716 HYPH denotes /
T4927 716-717 CD denotes 6
T4928 717-718 HYPH denotes /
T4929 718-719 CD denotes 7
T4930 720-723 MD denotes can
T4931 826-828 VBZ denotes is
T4932 729-731 IN denotes to
T4933 732-737 NN denotes Bub66
T4934 740-741 NN denotes G
T4935 737-738 HYPH denotes /
T4936 738-739 NN denotes T
T4937 739-740 HYPH denotes
T4938 741-742 HYPH denotes -
T4939 742-746 JJ denotes rich
T4940 747-750 CC denotes and
T4941 751-756 VBZ denotes forms
T4942 757-758 DT denotes a
T4943 776-783 NN denotes complex
T4944 759-765 JJ denotes double
T4945 766-775 JJ denotes hexameric
T4946 784-785 -LRB- denotes (
T4947 794-799 VBN denotes shown
T4948 785-789 NNS denotes data
T4949 790-793 RB denotes not
T4950 799-800 -RRB- denotes )
T4951 800-802 , denotes ,
T4952 802-805 DT denotes the
T4953 816-825 NN denotes unwinding
T4954 806-815 JJ denotes defective
T4955 829-832 RB denotes not
T4956 833-836 IN denotes due
T4957 837-839 IN denotes to
T4958 840-851 JJ denotes inefficient
T4959 852-859 NN denotes loading
T4960 860-862 IN denotes of
T4961 863-866 DT denotes the
T4962 867-875 NN denotes helicase
T4963 876-880 IN denotes onto
T4964 881-884 DT denotes the
T4965 885-894 NN denotes substrate
T4966 894-895 . denotes .
T4967 895-1193 sentence denotes If one hexamer interacting with the thymine-rich strand dissociates from the other hexamer and displaces only one of the duplex segments, then it would result in generation of Y-fork structures which could not be further displaced due to the presence of G-rich 3′-tail and would appear on the gel.
T4968 896-898 IN denotes If
T4969 952-963 VBZ denotes dissociates
T4970 899-902 CD denotes one
T4971 903-910 NN denotes hexamer
T4972 911-922 VBG denotes interacting
T4973 923-927 IN denotes with
T4974 928-931 DT denotes the
T4975 945-951 NN denotes strand
T4976 932-939 NN denotes thymine
T4977 940-944 JJ denotes rich
T4978 939-940 HYPH denotes -
T4979 1048-1054 VB denotes result
T4980 964-968 IN denotes from
T4981 969-972 DT denotes the
T4982 979-986 NN denotes hexamer
T4983 973-978 JJ denotes other
T4984 987-990 CC denotes and
T4985 991-1000 VBZ denotes displaces
T4986 1001-1005 RB denotes only
T4987 1006-1009 CD denotes one
T4988 1010-1012 IN denotes of
T4989 1013-1016 DT denotes the
T4990 1024-1032 NNS denotes segments
T4991 1017-1023 NN denotes duplex
T4992 1032-1034 , denotes ,
T4993 1034-1038 RB denotes then
T4994 1039-1041 PRP denotes it
T4995 1042-1047 MD denotes would
T4996 1055-1057 IN denotes in
T4997 1058-1068 NN denotes generation
T4998 1069-1071 IN denotes of
T4999 1072-1073 NN denotes Y
T5000 1074-1078 NN denotes fork
T5001 1073-1074 HYPH denotes -
T5002 1079-1089 NNS denotes structures
T5003 1090-1095 WDT denotes which
T5004 1117-1126 VBN denotes displaced
T5005 1096-1101 MD denotes could
T5006 1102-1105 RB denotes not
T5007 1106-1108 VB denotes be
T5008 1109-1116 RB denotes further
T5009 1127-1130 IN denotes due
T5010 1131-1133 IN denotes to
T5011 1134-1137 DT denotes the
T5012 1138-1146 NN denotes presence
T5013 1147-1149 IN denotes of
T5014 1150-1151 NN denotes G
T5015 1152-1156 JJ denotes rich
T5016 1151-1152 HYPH denotes -
T5017 1160-1164 NN denotes tail
T5018 1157-1158 CD denotes 3
T5019 1158-1159 SYM denotes
T5020 1159-1160 HYPH denotes -
T5021 1165-1168 CC denotes and
T5022 1169-1174 MD denotes would
T5023 1175-1181 VB denotes appear
T5024 1182-1184 IN denotes on
T5025 1185-1188 DT denotes the
T5026 1189-1192 NN denotes gel
T5027 1192-1193 . denotes .
T5028 1193-1419 sentence denotes However, we did not detect such intermediates during the course of the experiment (Figure 3B), suggesting that bubble can be displaced efficiently only when two molecules of the Mcm4/6/7 hexamers are simultaneously activated.
T5029 1194-1201 RB denotes However
T5030 1214-1220 VB denotes detect
T5031 1201-1203 , denotes ,
T5032 1203-1205 PRP denotes we
T5033 1206-1209 VBD denotes did
T5034 1210-1213 RB denotes not
T5035 1221-1225 JJ denotes such
T5036 1226-1239 NNS denotes intermediates
T5037 1240-1246 IN denotes during
T5038 1247-1250 DT denotes the
T5039 1251-1257 NN denotes course
T5040 1258-1260 IN denotes of
T5041 1261-1264 DT denotes the
T5042 1265-1275 NN denotes experiment
T5043 1276-1277 -LRB- denotes (
T5044 1284-1286 NN denotes 3B
T5045 1277-1283 NN denotes Figure
T5046 1286-1287 -RRB- denotes )
T5047 1287-1289 , denotes ,
T5048 1289-1299 VBG denotes suggesting
T5049 1300-1304 IN denotes that
T5050 1319-1328 VBN denotes displaced
T5051 1305-1311 NN denotes bubble
T5052 1312-1315 MD denotes can
T5053 1316-1318 VB denotes be
T5054 1329-1340 RB denotes efficiently
T5055 1341-1345 RB denotes only
T5056 1409-1418 VBN denotes activated
T5057 1346-1350 WRB denotes when
T5058 1351-1354 CD denotes two
T5059 1355-1364 NNS denotes molecules
T5060 1365-1367 IN denotes of
T5061 1368-1371 DT denotes the
T5062 1381-1389 NNS denotes hexamers
T5063 1372-1376 NN denotes Mcm4
T5064 1376-1377 HYPH denotes /
T5065 1377-1378 CD denotes 6
T5066 1378-1379 HYPH denotes /
T5067 1379-1380 CD denotes 7
T5068 1390-1393 VBP denotes are
T5069 1394-1408 RB denotes simultaneously
T5070 1418-1419 . denotes .
R3168 T4762 T4763 amod Symmetric,binding
R3169 T4763 T4764 nsubj binding,suggests
R3170 T4765 T4763 prep of,binding
R3171 T4766 T4767 det the,hexamer
R3172 T4767 T4765 pobj hexamer,of
R3173 T4768 T4767 nmod Mcm4,hexamer
R3174 T4769 T4768 punct /,Mcm4
R3175 T4770 T4768 nummod 6,Mcm4
R3176 T4771 T4768 punct /,Mcm4
R3177 T4772 T4768 nummod 7,Mcm4
R3178 T4773 T4767 amod double,hexamer
R3179 T4774 T4763 prep to,binding
R3180 T4775 T4774 pobj bubble,to
R3181 T4776 T4777 mark that,catalyzes
R3182 T4777 T4764 ccomp catalyzes,suggests
R3183 T4778 T4779 det each,hexamer
R3184 T4779 T4777 nsubj hexamer,catalyzes
R3185 T4780 T4777 dobj unwinding,catalyzes
R3186 T4781 T4780 prep of,unwinding
R3187 T4782 T4781 pobj one,of
R3188 T4783 T4782 prep of,one
R3189 T4784 T4785 det the,segments
R3190 T4785 T4783 pobj segments,of
R3191 T4786 T4785 nummod two,segments
R3192 T4787 T4785 compound duplex,segments
R3193 T4788 T4764 punct .,suggests
R3194 T4790 T4791 nsubj We,asked
R3195 T4792 T4793 mark whether,required
R3196 T4793 T4791 ccomp required,asked
R3197 T4794 T4793 nsubjpass activation,required
R3198 T4795 T4794 prep of,activation
R3199 T4796 T4797 det both,hexamers
R3200 T4797 T4795 pobj hexamers,of
R3201 T4798 T4793 auxpass is,required
R3202 T4799 T4793 prep for,required
R3203 T4800 T4799 pobj unwinding,for
R3204 T4801 T4800 prep of,unwinding
R3205 T4802 T4803 det the,substrate
R3206 T4803 T4801 pobj substrate,of
R3207 T4804 T4803 compound bubble,substrate
R3208 T4805 T4791 punct .,asked
R3209 T4807 T4808 det The,substrate
R3210 T4808 T4811 nsubj substrate,contains
R3211 T4809 T4808 amod preferred,substrate
R3212 T4810 T4808 compound bubble,substrate
R3213 T4812 T4813 dep which,unwound
R3214 T4813 T4808 relcl unwound,substrate
R3215 T4814 T4813 auxpass is,unwound
R3216 T4815 T4813 advmod efficiently,unwound
R3217 T4816 T4813 agent by,unwound
R3218 T4817 T4816 pobj Mcm4,by
R3219 T4818 T4817 punct /,Mcm4
R3220 T4819 T4817 nummod 6,Mcm4
R3221 T4820 T4817 punct /,Mcm4
R3222 T4821 T4817 nummod 7,Mcm4
R3223 T4822 T4823 compound thymine,stretches
R3224 T4823 T4811 dobj stretches,contains
R3225 T4824 T4823 prep on,stretches
R3226 T4825 T4826 det both,strands
R3227 T4826 T4824 pobj strands,on
R3228 T4827 T4826 prep of,strands
R3229 T4828 T4829 det the,segment
R3230 T4829 T4827 pobj segment,of
R3231 T4830 T4831 amod single,stranded
R3232 T4831 T4829 amod stranded,segment
R3233 T4832 T4831 punct -,stranded
R3234 T4833 T4811 punct .,contains
R3235 T4835 T4836 nsubj We,constructed
R3236 T4837 T4838 det a,hetero-bubble
R3237 T4838 T4836 dobj hetero-bubble,constructed
R3238 T4839 T4838 punct (,hetero-bubble
R3239 T4840 T4841 compound Bub66,G
R3240 T4841 T4838 appos G,hetero-bubble
R3241 T4842 T4841 punct /,G
R3242 T4843 T4841 compound T,G
R3243 T4844 T4841 punct –,G
R3244 T4845 T4841 punct -,G
R3245 T4846 T4841 amod rich,G
R3246 T4847 T4838 punct ),hetero-bubble
R3247 T4848 T4849 prep in,is
R3248 T4849 T4838 relcl is,hetero-bubble
R3249 T4850 T4848 pobj which,in
R3250 T4851 T4852 nummod one,strand
R3251 T4852 T4849 nsubj strand,is
R3252 T4853 T4854 npadvmod T,rich
R3253 T4854 T4849 acomp rich,is
R3254 T4855 T4854 punct -,rich
R3255 T4856 T4857 punct (,same
R3256 T4857 T4854 parataxis same,rich
R3257 T4858 T4857 prep as,same
R3258 T4859 T4860 compound Bub66,T
R3259 T4860 T4858 pobj T,as
R3260 T4861 T4860 punct /,T
R3261 T4862 T4860 punct -,T
R3262 T4863 T4860 amod rich,T
R3263 T4864 T4857 punct ),same
R3264 T4865 T4849 cc and,is
R3265 T4866 T4867 det the,strand
R3266 T4867 T4869 nsubj strand,is
R3267 T4868 T4867 amod other,strand
R3268 T4869 T4849 conj is,is
R3269 T4870 T4871 npadvmod G,rich
R3270 T4871 T4869 acomp rich,is
R3271 T4872 T4871 punct -,rich
R3272 T4873 T4874 punct (,same
R3273 T4874 T4871 parataxis same,rich
R3274 T4875 T4874 prep as,same
R3275 T4876 T4877 compound Bub66,G
R3276 T4877 T4875 pobj G,as
R3277 T4878 T4877 punct /,G
R3278 T4879 T4877 punct -,G
R3279 T4880 T4877 amod rich,G
R3280 T4881 T4874 punct ),same
R3281 T4882 T4883 punct (,13
R3282 T4883 T4871 parataxis 13,rich
R3283 T4884 T4883 punct ),13
R3284 T4885 T4836 punct ", ",constructed
R3285 T4886 T4836 cc and,constructed
R3286 T4887 T4888 compound helicase,assays
R3287 T4888 T4889 nsubjpass assays,conducted
R3288 T4889 T4836 conj conducted,constructed
R3289 T4890 T4889 auxpass were,conducted
R3290 T4891 T4889 prep with,conducted
R3291 T4892 T4893 amod increasing,amount
R3292 T4893 T4891 pobj amount,with
R3293 T4894 T4893 prep of,amount
R3294 T4895 T4894 pobj Mcm4,of
R3295 T4896 T4895 punct /,Mcm4
R3296 T4897 T4895 nummod 6,Mcm4
R3297 T4898 T4895 punct /,Mcm4
R3298 T4899 T4895 nummod 7,Mcm4
R3299 T4900 T4889 punct .,conducted
R3300 T4902 T4903 advmod Only,unwinding
R3301 T4903 T4905 nsubjpass unwinding,detected
R3302 T4904 T4903 amod weak,unwinding
R3303 T4906 T4905 auxpass was,detected
R3304 T4907 T4905 prep on,detected
R3305 T4908 T4909 det this,substrate
R3306 T4909 T4907 pobj substrate,on
R3307 T4910 T4905 prep compared,detected
R3308 T4911 T4910 prep to,compared
R3309 T4912 T4913 compound Bub66,T
R3310 T4913 T4911 pobj T,to
R3311 T4914 T4913 punct /,T
R3312 T4915 T4913 punct -,T
R3313 T4916 T4913 amod rich,T
R3314 T4917 T4918 punct (,3A
R3315 T4918 T4905 parataxis 3A,detected
R3316 T4919 T4918 compound Figure,3A
R3317 T4920 T4918 punct ),3A
R3318 T4921 T4905 punct .,detected
R3319 T4923 T4924 mark Since,bind
R3320 T4924 T4931 advcl bind,is
R3321 T4925 T4924 nsubj Mcm4,bind
R3322 T4926 T4925 punct /,Mcm4
R3323 T4927 T4925 nummod 6,Mcm4
R3324 T4928 T4925 punct /,Mcm4
R3325 T4929 T4925 nummod 7,Mcm4
R3326 T4930 T4924 aux can,bind
R3327 T4932 T4924 prep to,bind
R3328 T4933 T4934 compound Bub66,G
R3329 T4934 T4932 pobj G,to
R3330 T4935 T4934 punct /,G
R3331 T4936 T4934 compound T,G
R3332 T4937 T4934 punct –,G
R3333 T4938 T4934 punct -,G
R3334 T4939 T4934 amod rich,G
R3335 T4940 T4924 cc and,bind
R3336 T4941 T4924 conj forms,bind
R3337 T4942 T4943 det a,complex
R3338 T4943 T4941 dobj complex,forms
R3339 T4944 T4945 amod double,hexameric
R3340 T4945 T4943 amod hexameric,complex
R3341 T4946 T4947 punct (,shown
R3342 T4947 T4941 parataxis shown,forms
R3343 T4948 T4947 nsubj data,shown
R3344 T4949 T4947 neg not,shown
R3345 T4950 T4947 punct ),shown
R3346 T4951 T4931 punct ", ",is
R3347 T4952 T4953 det the,unwinding
R3348 T4953 T4931 nsubj unwinding,is
R3349 T4954 T4953 amod defective,unwinding
R3350 T4955 T4931 neg not,is
R3351 T4956 T4931 prep due,is
R3352 T4957 T4956 pcomp to,due
R3353 T4958 T4959 amod inefficient,loading
R3354 T4959 T4956 pobj loading,due
R3355 T4960 T4959 prep of,loading
R3356 T4961 T4962 det the,helicase
R3357 T4962 T4960 pobj helicase,of
R3358 T4963 T4959 prep onto,loading
R3359 T4964 T4965 det the,substrate
R3360 T4965 T4963 pobj substrate,onto
R3361 T4966 T4931 punct .,is
R3362 T4968 T4969 mark If,dissociates
R3363 T4969 T4979 advcl dissociates,result
R3364 T4970 T4971 nummod one,hexamer
R3365 T4971 T4969 nsubj hexamer,dissociates
R3366 T4972 T4971 acl interacting,hexamer
R3367 T4973 T4972 prep with,interacting
R3368 T4974 T4975 det the,strand
R3369 T4975 T4973 pobj strand,with
R3370 T4976 T4977 npadvmod thymine,rich
R3371 T4977 T4975 amod rich,strand
R3372 T4978 T4977 punct -,rich
R3373 T4980 T4969 prep from,dissociates
R3374 T4981 T4982 det the,hexamer
R3375 T4982 T4980 pobj hexamer,from
R3376 T4983 T4982 amod other,hexamer
R3377 T4984 T4969 cc and,dissociates
R3378 T4985 T4969 conj displaces,dissociates
R3379 T4986 T4987 advmod only,one
R3380 T4987 T4985 dobj one,displaces
R3381 T4988 T4987 prep of,one
R3382 T4989 T4990 det the,segments
R3383 T4990 T4988 pobj segments,of
R3384 T4991 T4990 compound duplex,segments
R3385 T4992 T4979 punct ", ",result
R3386 T4993 T4979 advmod then,result
R3387 T4994 T4979 nsubj it,result
R3388 T4995 T4979 aux would,result
R3389 T4996 T4979 prep in,result
R3390 T4997 T4996 pobj generation,in
R3391 T4998 T4997 prep of,generation
R3392 T4999 T5000 compound Y,fork
R3393 T5000 T5002 compound fork,structures
R3394 T5001 T5000 punct -,fork
R3395 T5002 T4998 pobj structures,of
R3396 T5003 T5004 dep which,displaced
R3397 T5004 T5002 relcl displaced,structures
R3398 T5005 T5004 aux could,displaced
R3399 T5006 T5004 neg not,displaced
R3400 T5007 T5004 auxpass be,displaced
R3401 T5008 T5004 advmod further,displaced
R3402 T5009 T5004 prep due,displaced
R3403 T5010 T5009 pcomp to,due
R3404 T5011 T5012 det the,presence
R3405 T5012 T5009 pobj presence,due
R3406 T5013 T5012 prep of,presence
R3407 T5014 T5015 npadvmod G,rich
R3408 T5015 T5017 amod rich,tail
R3409 T5016 T5015 punct -,rich
R3410 T5017 T5013 pobj tail,of
R3411 T5018 T5017 nummod 3,tail
R3412 T5019 T5018 punct ′,3
R3413 T5020 T5017 punct -,tail
R3414 T5021 T5004 cc and,displaced
R3415 T5022 T5023 aux would,appear
R3416 T5023 T5004 conj appear,displaced
R3417 T5024 T5023 prep on,appear
R3418 T5025 T5026 det the,gel
R3419 T5026 T5024 pobj gel,on
R3420 T5027 T4979 punct .,result
R3421 T5029 T5030 advmod However,detect
R3422 T5031 T5030 punct ", ",detect
R3423 T5032 T5030 nsubj we,detect
R3424 T5033 T5030 aux did,detect
R3425 T5034 T5030 neg not,detect
R3426 T5035 T5036 amod such,intermediates
R3427 T5036 T5030 dobj intermediates,detect
R3428 T5037 T5030 prep during,detect
R3429 T5038 T5039 det the,course
R3430 T5039 T5037 pobj course,during
R3431 T5040 T5039 prep of,course
R3432 T5041 T5042 det the,experiment
R3433 T5042 T5040 pobj experiment,of
R3434 T5043 T5044 punct (,3B
R3435 T5044 T5030 parataxis 3B,detect
R3436 T5045 T5044 compound Figure,3B
R3437 T5046 T5044 punct ),3B
R3438 T5047 T5030 punct ", ",detect
R3439 T5048 T5030 advcl suggesting,detect
R3440 T5049 T5050 mark that,displaced
R3441 T5050 T5048 ccomp displaced,suggesting
R3442 T5051 T5050 nsubjpass bubble,displaced
R3443 T5052 T5050 aux can,displaced
R3444 T5053 T5050 auxpass be,displaced
R3445 T5054 T5050 advmod efficiently,displaced
R3446 T5055 T5056 advmod only,activated
R3447 T5056 T5050 advcl activated,displaced
R3448 T5057 T5056 advmod when,activated
R3449 T5058 T5059 nummod two,molecules
R3450 T5059 T5056 nsubjpass molecules,activated
R3451 T5060 T5059 prep of,molecules
R3452 T5061 T5062 det the,hexamers
R3453 T5062 T5060 pobj hexamers,of
R3454 T5063 T5062 nmod Mcm4,hexamers
R3455 T5064 T5063 punct /,Mcm4
R3456 T5065 T5063 nummod 6,Mcm4
R3457 T5066 T5063 punct /,Mcm4
R3458 T5067 T5063 nummod 7,Mcm4
R3459 T5068 T5056 auxpass are,activated
R3460 T5069 T5056 advmod simultaneously,activated
R3461 T5070 T5030 punct .,detect

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4698 10-17 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T4699 25-29 PR_EXT:000010246 denotes Mcm4
T4700 25-33 GO:0097373 denotes Mcm4/6/7
T4701 34-48 GO_EXT:double_hexameric_macromolecular_complex denotes double hexamer
T4702 78-85 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4703 86-95 GO_MOP_EXT:catalysis denotes catalyzes
T4704 124-130 SO:0000985 denotes duplex
T4705 177-185 GO_EXT:hexameric_macromolecular_complex denotes hexamers
T4706 300-304 PR_EXT:000010246 denotes Mcm4
T4707 300-308 GO:0097373 denotes Mcm4/6/7
T4708 318-325 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T4709 359-374 SO:0000984 denotes single-stranded
T4710 422-423 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4711 424-425 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4712 455-456 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4713 477-478 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4714 509-510 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4715 531-532 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4716 549-557 GO_EXT:0004386 denotes helicase
T4717 606-610 PR_EXT:000010246 denotes Mcm4
T4718 606-614 GO:0097373 denotes Mcm4/6/7
T4719 685-686 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4720 711-715 PR_EXT:000010246 denotes Mcm4
T4721 711-719 GO:0097373 denotes Mcm4/6/7
T4722 724-728 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T4723 738-739 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4724 740-741 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4725 759-783 GO_EXT:double_hexameric_macromolecular_complex denotes double hexameric complex
T4726 867-875 GO_EXT:0004386 denotes helicase
T4727 903-910 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4728 932-939 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T4729 979-986 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4730 1017-1023 SO:0000985 denotes duplex
T4731 1074-1078 GO:0005657 denotes fork
T4732 1150-1151 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4733 1355-1364 CHEBI:36357 denotes molecules
T4734 1372-1376 PR_EXT:000010246 denotes Mcm4
T4735 1372-1380 GO:0097373 denotes Mcm4/6/7
T4736 1381-1389 GO_EXT:hexameric_macromolecular_complex denotes hexamers

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4676 25-29 PR:000010246 denotes Mcm4
T4677 25-33 GO:0097373 denotes Mcm4/6/7
T4678 124-130 SO:0000985 denotes duplex
T4679 300-304 PR:000010246 denotes Mcm4
T4680 300-308 GO:0097373 denotes Mcm4/6/7
T4681 359-374 SO:0000984 denotes single-stranded
T4682 606-610 PR:000010246 denotes Mcm4
T4683 606-614 GO:0097373 denotes Mcm4/6/7
T4684 711-715 PR:000010246 denotes Mcm4
T4685 711-719 GO:0097373 denotes Mcm4/6/7
T4686 1017-1023 SO:0000985 denotes duplex
T4687 1074-1078 GO:0005657 denotes fork
T4688 1355-1364 CHEBI:36357 denotes molecules
T4689 1372-1376 PR:000010246 denotes Mcm4
T4690 1372-1380 GO:0097373 denotes Mcm4/6/7

2_test

Id Subject Object Predicate Lexical cue
15917436-14609960-76775513 540-542 14609960 denotes 13