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PMC:1140370 / 11125-11384 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T3477 72-81 VBD denotes conducted
T3475 0-259 sentence denotes In order to examine the mode of binding of Mcm4/6/7 on bubble DNAs, we conducted nuclease protection assays using labeled bubble substrate DNAs and Mcm4/6/7 in the presence of ATP-γ-S which permits binding to substrate DNA but does not mobilize the helicase.
T3476 1-3 IN denotes In
T3478 4-9 NN denotes order
T3479 10-12 TO denotes to
T3480 13-20 VB denotes examine
T3481 21-24 DT denotes the
T3482 25-29 NN denotes mode
T3483 30-32 IN denotes of
T3484 33-40 NN denotes binding
T3485 41-43 IN denotes of
T3486 44-48 NN denotes Mcm4
T3487 48-49 HYPH denotes /
T3488 49-50 CD denotes 6
T3489 50-51 HYPH denotes /
T3490 51-52 CD denotes 7
T3491 53-55 IN denotes on
T3492 56-62 NN denotes bubble
T3493 63-67 NNS denotes DNAs
T3494 67-69 , denotes ,
T3495 69-71 PRP denotes we
T3496 82-90 NN denotes nuclease
T3497 102-108 NNS denotes assays
T3498 91-101 NN denotes protection
T3499 109-114 VBG denotes using
T3500 115-122 VBN denotes labeled
T3501 140-144 NNS denotes DNAs
T3502 123-129 NN denotes bubble
T3503 130-139 NN denotes substrate
T3504 145-148 CC denotes and
T3505 149-153 NN denotes Mcm4
T3506 153-154 HYPH denotes /
T3507 154-155 CD denotes 6
T3508 155-156 HYPH denotes /
T3509 156-157 CD denotes 7
T3510 158-160 IN denotes in
T3511 161-164 DT denotes the
T3512 165-173 NN denotes presence
T3513 174-176 IN denotes of
T3514 177-180 NN denotes ATP
T3515 183-184 NN denotes S
T3516 180-181 HYPH denotes -
T3517 181-182 SYM denotes γ
T3518 182-183 HYPH denotes -
T3519 185-190 WDT denotes which
T3520 191-198 VBZ denotes permits
T3521 199-206 NN denotes binding
T3522 207-209 IN denotes to
T3523 210-219 NN denotes substrate
T3524 220-223 NN denotes DNA
T3525 224-227 CC denotes but
T3526 228-232 VBZ denotes does
T3527 237-245 VB denotes mobilize
T3528 233-236 RB denotes not
T3529 246-249 DT denotes the
T3530 250-258 NN denotes helicase
T3531 258-259 . denotes .
R2197 T3476 T3477 prep In,conducted
R2198 T3478 T3476 pobj order,In
R2199 T3479 T3480 aux to,examine
R2200 T3480 T3478 acl examine,order
R2201 T3481 T3482 det the,mode
R2202 T3482 T3480 dobj mode,examine
R2203 T3483 T3482 prep of,mode
R2204 T3484 T3483 pobj binding,of
R2205 T3485 T3484 prep of,binding
R2206 T3486 T3485 pobj Mcm4,of
R2207 T3487 T3486 punct /,Mcm4
R2208 T3488 T3486 nummod 6,Mcm4
R2209 T3489 T3486 punct /,Mcm4
R2210 T3490 T3486 nummod 7,Mcm4
R2211 T3491 T3484 prep on,binding
R2212 T3492 T3493 compound bubble,DNAs
R2213 T3493 T3491 pobj DNAs,on
R2214 T3494 T3477 punct ", ",conducted
R2215 T3495 T3477 nsubj we,conducted
R2216 T3496 T3497 compound nuclease,assays
R2217 T3497 T3477 dobj assays,conducted
R2218 T3498 T3497 compound protection,assays
R2219 T3499 T3477 advcl using,conducted
R2220 T3500 T3501 amod labeled,DNAs
R2221 T3501 T3499 dobj DNAs,using
R2222 T3502 T3503 compound bubble,substrate
R2223 T3503 T3501 compound substrate,DNAs
R2224 T3504 T3501 cc and,DNAs
R2225 T3505 T3501 conj Mcm4,DNAs
R2226 T3506 T3505 punct /,Mcm4
R2227 T3507 T3505 nummod 6,Mcm4
R2228 T3508 T3505 punct /,Mcm4
R2229 T3509 T3505 nummod 7,Mcm4
R2230 T3510 T3477 prep in,conducted
R2231 T3511 T3512 det the,presence
R2232 T3512 T3510 pobj presence,in
R2233 T3513 T3512 prep of,presence
R2234 T3514 T3515 nmod ATP,S
R2235 T3515 T3513 pobj S,of
R2236 T3516 T3515 punct -,S
R2237 T3517 T3515 punct γ,S
R2238 T3518 T3515 punct -,S
R2239 T3519 T3520 dep which,permits
R2240 T3520 T3515 relcl permits,S
R2241 T3521 T3520 dobj binding,permits
R2242 T3522 T3521 prep to,binding
R2243 T3523 T3524 compound substrate,DNA
R2244 T3524 T3522 pobj DNA,to
R2245 T3525 T3520 cc but,permits
R2246 T3526 T3527 aux does,mobilize
R2247 T3527 T3520 conj mobilize,permits
R2248 T3528 T3527 neg not,mobilize
R2249 T3529 T3530 det the,helicase
R2250 T3530 T3527 dobj helicase,mobilize
R2251 T3531 T3477 punct .,conducted

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3362 33-40 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3363 44-48 PR_EXT:000010246 denotes Mcm4
T3364 44-52 GO:0097373 denotes Mcm4/6/7
T3365 63-67 CHEBI_SO_EXT:DNA denotes DNAs
T3366 82-90 GO_EXT:0004518 denotes nuclease
T3367 115-122 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T3368 140-144 CHEBI_SO_EXT:DNA denotes DNAs
T3369 149-153 PR_EXT:000010246 denotes Mcm4
T3370 149-157 GO:0097373 denotes Mcm4/6/7
T3371 177-184 CHEBI:27575 denotes ATP-γ-S
T3372 199-206 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3373 220-223 CHEBI_SO_EXT:DNA denotes DNA
T3374 237-245 GO_EXT:biological_recruitment denotes mobilize
T3375 250-258 GO_EXT:0004386 denotes helicase

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3310 44-48 PR:000010246 denotes Mcm4
T3311 44-52 GO:0097373 denotes Mcm4/6/7
T3312 149-153 PR:000010246 denotes Mcm4
T3313 149-157 GO:0097373 denotes Mcm4/6/7
T3314 177-184 CHEBI:27575 denotes ATP-γ-S