> top > docs > PMC:1140370 > spans > 10904-13207 > annotations

PMC:1140370 / 10904-13207 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T3477 293-302 VBD denotes conducted
T3428 0-4 NN denotes Mcm4
T3429 9-16 NN denotes complex
T3430 4-5 HYPH denotes /
T3431 5-6 CD denotes 6
T3432 6-7 HYPH denotes /
T3433 7-8 CD denotes 7
T3434 27-36 VBZ denotes interacts
T3435 17-26 RB denotes primarily
T3436 37-41 IN denotes with
T3437 42-45 DT denotes the
T3438 66-73 NN denotes segment
T3439 46-52 JJ denotes single
T3440 53-61 VBN denotes stranded
T3441 52-53 HYPH denotes -
T3442 62-65 NN denotes DNA
T3443 73-221 sentence denotes Mcm4/6/7 binds to ‘bubble’ DNA substrates and unwinds the duplex segments when the central single-stranded segment contains thymine stretches (13).
T3444 74-78 NN denotes Mcm4
T3445 83-88 VBZ denotes binds
T3446 78-79 HYPH denotes /
T3447 79-80 CD denotes 6
T3448 80-81 HYPH denotes /
T3449 81-82 CD denotes 7
T3450 89-91 IN denotes to
T3451 92-93 `` denotes ‘
T3452 105-115 NNS denotes substrates
T3453 93-99 NN denotes bubble
T3454 99-100 '' denotes ’
T3455 101-104 NN denotes DNA
T3456 116-119 CC denotes and
T3457 120-127 VBZ denotes unwinds
T3458 128-131 DT denotes the
T3459 139-147 NNS denotes segments
T3460 132-138 NN denotes duplex
T3461 148-152 WRB denotes when
T3462 189-197 VBZ denotes contains
T3463 153-156 DT denotes the
T3464 181-188 NN denotes segment
T3465 157-164 JJ denotes central
T3466 165-171 JJ denotes single
T3467 172-180 VBN denotes stranded
T3468 171-172 HYPH denotes -
T3469 198-205 NN denotes thymine
T3470 206-215 NNS denotes stretches
T3471 216-217 -LRB- denotes (
T3472 217-219 CD denotes 13
T3473 219-220 -RRB- denotes )
T3474 220-221 . denotes .
T3475 221-480 sentence denotes In order to examine the mode of binding of Mcm4/6/7 on bubble DNAs, we conducted nuclease protection assays using labeled bubble substrate DNAs and Mcm4/6/7 in the presence of ATP-γ-S which permits binding to substrate DNA but does not mobilize the helicase.
T3476 222-224 IN denotes In
T3478 225-230 NN denotes order
T3479 231-233 TO denotes to
T3480 234-241 VB denotes examine
T3481 242-245 DT denotes the
T3482 246-250 NN denotes mode
T3483 251-253 IN denotes of
T3484 254-261 NN denotes binding
T3485 262-264 IN denotes of
T3486 265-269 NN denotes Mcm4
T3487 269-270 HYPH denotes /
T3488 270-271 CD denotes 6
T3489 271-272 HYPH denotes /
T3490 272-273 CD denotes 7
T3491 274-276 IN denotes on
T3492 277-283 NN denotes bubble
T3493 284-288 NNS denotes DNAs
T3494 288-290 , denotes ,
T3495 290-292 PRP denotes we
T3496 303-311 NN denotes nuclease
T3497 323-329 NNS denotes assays
T3498 312-322 NN denotes protection
T3499 330-335 VBG denotes using
T3500 336-343 VBN denotes labeled
T3501 361-365 NNS denotes DNAs
T3502 344-350 NN denotes bubble
T3503 351-360 NN denotes substrate
T3504 366-369 CC denotes and
T3505 370-374 NN denotes Mcm4
T3506 374-375 HYPH denotes /
T3507 375-376 CD denotes 6
T3508 376-377 HYPH denotes /
T3509 377-378 CD denotes 7
T3510 379-381 IN denotes in
T3511 382-385 DT denotes the
T3512 386-394 NN denotes presence
T3513 395-397 IN denotes of
T3514 398-401 NN denotes ATP
T3515 404-405 NN denotes S
T3516 401-402 HYPH denotes -
T3517 402-403 SYM denotes γ
T3518 403-404 HYPH denotes -
T3519 406-411 WDT denotes which
T3520 412-419 VBZ denotes permits
T3521 420-427 NN denotes binding
T3522 428-430 IN denotes to
T3523 431-440 NN denotes substrate
T3524 441-444 NN denotes DNA
T3525 445-448 CC denotes but
T3526 449-453 VBZ denotes does
T3527 458-466 VB denotes mobilize
T3528 454-457 RB denotes not
T3529 467-470 DT denotes the
T3530 471-479 NN denotes helicase
T3531 479-480 . denotes .
T3532 480-751 sentence denotes At an optimum concentration of DNase I, strong cleavages were detected on the 21 bp duplex regions at both ends of the substrates, whereas weaker cleavages were detected on the central single-stranded region, consistent with preference of DNase I to double-stranded DNA.
T3533 481-483 IN denotes At
T3534 543-551 VBN denotes detected
T3535 484-486 DT denotes an
T3536 495-508 NN denotes concentration
T3537 487-494 JJ denotes optimum
T3538 509-511 IN denotes of
T3539 512-517 NN denotes DNase
T3540 518-519 CD denotes I
T3541 519-521 , denotes ,
T3542 521-527 JJ denotes strong
T3543 528-537 NNS denotes cleavages
T3544 538-542 VBD denotes were
T3545 552-554 IN denotes on
T3546 555-558 DT denotes the
T3547 572-579 NNS denotes regions
T3548 559-561 CD denotes 21
T3549 562-564 NN denotes bp
T3550 565-571 NN denotes duplex
T3551 580-582 IN denotes at
T3552 583-587 DT denotes both
T3553 588-592 NNS denotes ends
T3554 593-595 IN denotes of
T3555 596-599 DT denotes the
T3556 600-610 NNS denotes substrates
T3557 610-612 , denotes ,
T3558 612-619 IN denotes whereas
T3559 642-650 VBN denotes detected
T3560 620-626 JJR denotes weaker
T3561 627-636 NNS denotes cleavages
T3562 637-641 VBD denotes were
T3563 651-653 IN denotes on
T3564 654-657 DT denotes the
T3565 682-688 NN denotes region
T3566 658-665 JJ denotes central
T3567 666-672 JJ denotes single
T3568 673-681 VBN denotes stranded
T3569 672-673 HYPH denotes -
T3570 688-690 , denotes ,
T3571 690-700 JJ denotes consistent
T3572 701-705 IN denotes with
T3573 706-716 NN denotes preference
T3574 717-719 IN denotes of
T3575 720-725 NN denotes DNase
T3576 726-727 CD denotes I
T3577 728-730 IN denotes to
T3578 731-737 JJ denotes double
T3579 738-746 VBN denotes stranded
T3580 737-738 HYPH denotes -
T3581 747-750 NN denotes DNA
T3582 750-751 . denotes .
T3583 751-1009 sentence denotes With the Bub66/T-rich substrate, strong protection was detected on the entire single-stranded regions of both top and bottom strands with increasing concentration of Mcm4/6/7, consistent with high affinity of Mcm4/6/7 to T-rich bubble sequences (Figure 1A).
T3584 752-756 IN denotes With
T3585 807-815 VBN denotes detected
T3586 757-760 DT denotes the
T3587 774-783 NN denotes substrate
T3588 761-766 NN denotes Bub66
T3589 766-767 HYPH denotes /
T3590 767-768 NN denotes T
T3591 768-769 HYPH denotes -
T3592 769-773 JJ denotes rich
T3593 783-785 , denotes ,
T3594 785-791 JJ denotes strong
T3595 792-802 NN denotes protection
T3596 803-806 VBD denotes was
T3597 816-818 IN denotes on
T3598 819-822 DT denotes the
T3599 846-853 NNS denotes regions
T3600 823-829 JJ denotes entire
T3601 830-836 JJ denotes single
T3602 837-845 VBN denotes stranded
T3603 836-837 HYPH denotes -
T3604 854-856 IN denotes of
T3605 857-861 CC denotes both
T3606 862-865 JJ denotes top
T3607 877-884 NNS denotes strands
T3608 866-869 CC denotes and
T3609 870-876 JJ denotes bottom
T3610 885-889 IN denotes with
T3611 890-900 VBG denotes increasing
T3612 901-914 NN denotes concentration
T3613 915-917 IN denotes of
T3614 918-922 NN denotes Mcm4
T3615 922-923 HYPH denotes /
T3616 923-924 CD denotes 6
T3617 924-925 HYPH denotes /
T3618 925-926 CD denotes 7
T3619 926-928 , denotes ,
T3620 928-938 JJ denotes consistent
T3621 939-943 IN denotes with
T3622 944-948 JJ denotes high
T3623 949-957 NN denotes affinity
T3624 958-960 IN denotes of
T3625 961-965 NN denotes Mcm4
T3626 965-966 HYPH denotes /
T3627 966-967 CD denotes 6
T3628 967-968 HYPH denotes /
T3629 968-969 CD denotes 7
T3630 970-972 IN denotes to
T3631 973-974 NN denotes T
T3632 987-996 NNS denotes sequences
T3633 974-975 HYPH denotes -
T3634 975-979 JJ denotes rich
T3635 980-986 NN denotes bubble
T3636 997-998 -LRB- denotes (
T3637 1005-1007 NN denotes 1A
T3638 998-1004 NN denotes Figure
T3639 1007-1008 -RRB- denotes )
T3640 1008-1009 . denotes .
T3641 1009-1171 sentence denotes Similar, but less significant protection was detected on the single-stranded DNA segment with P1 nucleases (Figure 1A), which is specific to single-stranded DNA.
T3642 1010-1017 JJ denotes Similar
T3643 1040-1050 NN denotes protection
T3644 1017-1019 , denotes ,
T3645 1019-1022 CC denotes but
T3646 1023-1027 RBR denotes less
T3647 1028-1039 JJ denotes significant
T3648 1055-1063 VBN denotes detected
T3649 1051-1054 VBD denotes was
T3650 1064-1066 IN denotes on
T3651 1067-1070 DT denotes the
T3652 1091-1098 NN denotes segment
T3653 1071-1077 JJ denotes single
T3654 1078-1086 VBN denotes stranded
T3655 1077-1078 HYPH denotes -
T3656 1087-1090 NN denotes DNA
T3657 1099-1103 IN denotes with
T3658 1104-1106 NN denotes P1
T3659 1107-1116 NNS denotes nucleases
T3660 1117-1118 -LRB- denotes (
T3661 1125-1127 NN denotes 1A
T3662 1118-1124 NN denotes Figure
T3663 1127-1128 -RRB- denotes )
T3664 1128-1130 , denotes ,
T3665 1130-1135 WDT denotes which
T3666 1136-1138 VBZ denotes is
T3667 1139-1147 JJ denotes specific
T3668 1148-1150 IN denotes to
T3669 1151-1157 JJ denotes single
T3670 1158-1166 VBN denotes stranded
T3671 1157-1158 HYPH denotes -
T3672 1167-1170 NN denotes DNA
T3673 1170-1171 . denotes .
T3674 1171-1302 sentence denotes The results indicate that the Mcm complex is loaded onto bubble DNA through binding to both strands of the single-stranded region.
T3675 1172-1175 DT denotes The
T3676 1176-1183 NNS denotes results
T3677 1184-1192 VBP denotes indicate
T3678 1193-1197 IN denotes that
T3679 1217-1223 VBN denotes loaded
T3680 1198-1201 DT denotes the
T3681 1206-1213 NN denotes complex
T3682 1202-1205 NN denotes Mcm
T3683 1214-1216 VBZ denotes is
T3684 1224-1228 IN denotes onto
T3685 1229-1235 NN denotes bubble
T3686 1236-1239 NN denotes DNA
T3687 1240-1247 IN denotes through
T3688 1248-1255 NN denotes binding
T3689 1256-1258 IN denotes to
T3690 1259-1263 DT denotes both
T3691 1264-1271 NNS denotes strands
T3692 1272-1274 IN denotes of
T3693 1275-1278 DT denotes the
T3694 1295-1301 NN denotes region
T3695 1279-1285 JJ denotes single
T3696 1286-1294 VBN denotes stranded
T3697 1285-1286 HYPH denotes -
T3698 1301-1302 . denotes .
T3699 1302-1576 sentence denotes Careful examination of Mcm4/6/7 footprints on a bubble indicated strong protection on the 5′-half of the top strand and moderate protection on the remaining 3′-half, as well as on several base-pair duplex segment adjacent to the branch point (Figure 1A and data not shown).
T3700 1303-1310 JJ denotes Careful
T3701 1311-1322 NN denotes examination
T3702 1358-1367 VBD denotes indicated
T3703 1323-1325 IN denotes of
T3704 1326-1330 NN denotes Mcm4
T3705 1335-1345 NNS denotes footprints
T3706 1330-1331 HYPH denotes /
T3707 1331-1332 CD denotes 6
T3708 1332-1333 HYPH denotes /
T3709 1333-1334 CD denotes 7
T3710 1346-1348 IN denotes on
T3711 1349-1350 DT denotes a
T3712 1351-1357 NN denotes bubble
T3713 1368-1374 JJ denotes strong
T3714 1375-1385 NN denotes protection
T3715 1386-1388 IN denotes on
T3716 1389-1392 DT denotes the
T3717 1396-1400 NN denotes half
T3718 1393-1394 CD denotes 5
T3719 1394-1395 SYM denotes ′
T3720 1395-1396 HYPH denotes -
T3721 1401-1403 IN denotes of
T3722 1404-1407 DT denotes the
T3723 1412-1418 NN denotes strand
T3724 1408-1411 JJ denotes top
T3725 1419-1422 CC denotes and
T3726 1423-1431 JJ denotes moderate
T3727 1432-1442 NN denotes protection
T3728 1443-1445 IN denotes on
T3729 1446-1449 DT denotes the
T3730 1463-1467 NN denotes half
T3731 1450-1459 VBG denotes remaining
T3732 1460-1461 CD denotes 3
T3733 1461-1462 SYM denotes ′
T3734 1462-1463 HYPH denotes -
T3735 1467-1469 , denotes ,
T3736 1469-1471 RB denotes as
T3737 1477-1479 IN denotes as
T3738 1472-1476 RB denotes well
T3739 1480-1482 IN denotes on
T3740 1483-1490 JJ denotes several
T3741 1508-1515 NN denotes segment
T3742 1491-1495 NN denotes base
T3743 1496-1500 NN denotes pair
T3744 1495-1496 HYPH denotes -
T3745 1501-1507 NN denotes duplex
T3746 1516-1524 JJ denotes adjacent
T3747 1525-1527 IN denotes to
T3748 1528-1531 DT denotes the
T3749 1539-1544 NN denotes point
T3750 1532-1538 NN denotes branch
T3751 1545-1546 -LRB- denotes (
T3752 1553-1555 NN denotes 1A
T3753 1546-1552 NN denotes Figure
T3754 1556-1559 CC denotes and
T3755 1560-1564 NNS denotes data
T3756 1565-1568 RB denotes not
T3757 1569-1574 VBN denotes shown
T3758 1574-1575 -RRB- denotes )
T3759 1575-1576 . denotes .
T3760 1576-1648 sentence denotes A similar pattern of protection was observed also on the bottom strand.
T3761 1577-1578 DT denotes A
T3762 1587-1594 NN denotes pattern
T3763 1579-1586 JJ denotes similar
T3764 1613-1621 VBN denotes observed
T3765 1595-1597 IN denotes of
T3766 1598-1608 NN denotes protection
T3767 1609-1612 VBD denotes was
T3768 1622-1626 RB denotes also
T3769 1627-1629 IN denotes on
T3770 1630-1633 DT denotes the
T3771 1641-1647 NN denotes strand
T3772 1634-1640 JJ denotes bottom
T3773 1647-1648 . denotes .
T3774 1648-1841 sentence denotes This suggests that Mcm4/6/7 may bind to a replication bubble substrate with a 2-fold symmetry as a double hexamer (Figure 1A, see the lower scheme), in a manner similar to SV40 T-antigen (21).
T3775 1649-1653 DT denotes This
T3776 1654-1662 VBZ denotes suggests
T3777 1663-1667 IN denotes that
T3778 1681-1685 VB denotes bind
T3779 1668-1672 NN denotes Mcm4
T3780 1672-1673 HYPH denotes /
T3781 1673-1674 CD denotes 6
T3782 1674-1675 HYPH denotes /
T3783 1675-1676 CD denotes 7
T3784 1677-1680 MD denotes may
T3785 1686-1688 IN denotes to
T3786 1689-1690 DT denotes a
T3787 1710-1719 NN denotes substrate
T3788 1691-1702 NN denotes replication
T3789 1703-1709 NN denotes bubble
T3790 1720-1724 IN denotes with
T3791 1725-1726 DT denotes a
T3792 1734-1742 NN denotes symmetry
T3793 1727-1733 CD denotes 2-fold
T3794 1743-1745 IN denotes as
T3795 1746-1747 DT denotes a
T3796 1755-1762 NN denotes hexamer
T3797 1748-1754 JJ denotes double
T3798 1763-1764 -LRB- denotes (
T3799 1771-1773 NN denotes 1A
T3800 1764-1770 NN denotes Figure
T3801 1773-1775 , denotes ,
T3802 1775-1778 VBP denotes see
T3803 1779-1782 DT denotes the
T3804 1789-1795 NN denotes scheme
T3805 1783-1788 JJ denotes lower
T3806 1795-1796 -RRB- denotes )
T3807 1796-1798 , denotes ,
T3808 1798-1800 IN denotes in
T3809 1801-1802 DT denotes a
T3810 1803-1809 NN denotes manner
T3811 1810-1817 JJ denotes similar
T3812 1818-1820 IN denotes to
T3813 1821-1825 NN denotes SV40
T3814 1828-1835 NN denotes antigen
T3815 1826-1827 NN denotes T
T3816 1827-1828 HYPH denotes -
T3817 1836-1837 -LRB- denotes (
T3818 1837-1839 CD denotes 21
T3819 1839-1840 -RRB- denotes )
T3820 1840-1841 . denotes .
T3821 1841-1932 sentence denotes Nuclease protection assays were conducted also on a T-tailed Y-fork structure (Figure 1B).
T3822 1842-1850 NN denotes Nuclease
T3823 1851-1861 NN denotes protection
T3824 1862-1868 NNS denotes assays
T3825 1874-1883 VBN denotes conducted
T3826 1869-1873 VBD denotes were
T3827 1884-1888 RB denotes also
T3828 1889-1891 IN denotes on
T3829 1892-1893 DT denotes a
T3830 1910-1919 NN denotes structure
T3831 1894-1895 NN denotes T
T3832 1896-1902 VBN denotes tailed
T3833 1895-1896 HYPH denotes -
T3834 1903-1904 NN denotes Y
T3835 1905-1909 NN denotes fork
T3836 1904-1905 HYPH denotes -
T3837 1920-1921 -LRB- denotes (
T3838 1928-1930 NN denotes 1B
T3839 1921-1927 NN denotes Figure
T3840 1930-1931 -RRB- denotes )
T3841 1931-1932 . denotes .
T3842 1932-2104 sentence denotes Not only the single-stranded tail region but also the 7 bp duplex DNA adjacent to the duplex-to-single-strand junction were protected by Mcm binding from DNaseI digestion.
T3843 1933-1936 RB denotes Not
T3844 1967-1973 NN denotes region
T3845 1937-1941 RB denotes only
T3846 1942-1945 DT denotes the
T3847 1946-1952 JJ denotes single
T3848 1953-1961 VBN denotes stranded
T3849 1952-1953 HYPH denotes -
T3850 1962-1966 NN denotes tail
T3851 2057-2066 VBN denotes protected
T3852 1974-1977 CC denotes but
T3853 1978-1982 RB denotes also
T3854 1983-1986 DT denotes the
T3855 1999-2002 NN denotes DNA
T3856 1987-1988 CD denotes 7
T3857 1989-1991 NN denotes bp
T3858 1992-1998 NN denotes duplex
T3859 2003-2011 JJ denotes adjacent
T3860 2012-2014 IN denotes to
T3861 2015-2018 DT denotes the
T3862 2043-2051 NN denotes junction
T3863 2019-2025 NN denotes duplex
T3864 2025-2026 HYPH denotes -
T3865 2026-2028 IN denotes to
T3866 2028-2029 HYPH denotes -
T3867 2029-2035 JJ denotes single
T3868 2036-2042 NN denotes strand
T3869 2035-2036 HYPH denotes -
T3870 2052-2056 VBD denotes were
T3871 2067-2069 IN denotes by
T3872 2070-2073 NN denotes Mcm
T3873 2074-2081 NN denotes binding
T3874 2082-2086 IN denotes from
T3875 2087-2093 NN denotes DNaseI
T3876 2094-2103 NN denotes digestion
T3877 2103-2104 . denotes .
T3878 2104-2303 sentence denotes These results indicate that Mcm4/6/7 protein primarily interacts with single-stranded DNA region and that the interaction also spans the duplex segments near the branchpoint of the replication fork.
T3879 2105-2110 DT denotes These
T3880 2111-2118 NNS denotes results
T3881 2119-2127 VBP denotes indicate
T3882 2128-2132 IN denotes that
T3883 2160-2169 VBZ denotes interacts
T3884 2133-2137 NN denotes Mcm4
T3885 2142-2149 NN denotes protein
T3886 2137-2138 HYPH denotes /
T3887 2138-2139 CD denotes 6
T3888 2139-2140 HYPH denotes /
T3889 2140-2141 CD denotes 7
T3890 2150-2159 RB denotes primarily
T3891 2170-2174 IN denotes with
T3892 2175-2181 JJ denotes single
T3893 2182-2190 VBN denotes stranded
T3894 2181-2182 HYPH denotes -
T3895 2195-2201 NN denotes region
T3896 2191-2194 NN denotes DNA
T3897 2202-2205 CC denotes and
T3898 2206-2210 IN denotes that
T3899 2232-2237 VBZ denotes spans
T3900 2211-2214 DT denotes the
T3901 2215-2226 NN denotes interaction
T3902 2227-2231 RB denotes also
T3903 2238-2241 DT denotes the
T3904 2249-2257 NNS denotes segments
T3905 2242-2248 NN denotes duplex
T3906 2258-2262 IN denotes near
T3907 2263-2266 DT denotes the
T3908 2267-2278 NN denotes branchpoint
T3909 2279-2281 IN denotes of
T3910 2282-2285 DT denotes the
T3911 2298-2302 NN denotes fork
T3912 2286-2297 NN denotes replication
T3913 2302-2303 . denotes .
R2153 T3428 T3429 nmod Mcm4,complex
R2154 T3429 T3434 nsubj complex,interacts
R2155 T3430 T3428 punct /,Mcm4
R2156 T3431 T3428 nummod 6,Mcm4
R2157 T3432 T3428 punct /,Mcm4
R2158 T3433 T3428 nummod 7,Mcm4
R2159 T3435 T3434 advmod primarily,interacts
R2160 T3436 T3434 prep with,interacts
R2161 T3437 T3438 det the,segment
R2162 T3438 T3436 pobj segment,with
R2163 T3439 T3440 amod single,stranded
R2164 T3440 T3438 amod stranded,segment
R2165 T3441 T3440 punct -,stranded
R2166 T3442 T3438 compound DNA,segment
R2167 T3444 T3445 nsubj Mcm4,binds
R2168 T3446 T3444 punct /,Mcm4
R2169 T3447 T3444 nummod 6,Mcm4
R2170 T3448 T3444 punct /,Mcm4
R2171 T3449 T3444 nummod 7,Mcm4
R2172 T3450 T3445 prep to,binds
R2173 T3451 T3452 punct ‘,substrates
R2174 T3452 T3450 pobj substrates,to
R2175 T3453 T3452 nmod bubble,substrates
R2176 T3454 T3452 punct ’,substrates
R2177 T3455 T3452 compound DNA,substrates
R2178 T3456 T3445 cc and,binds
R2179 T3457 T3445 conj unwinds,binds
R2180 T3458 T3459 det the,segments
R2181 T3459 T3457 dobj segments,unwinds
R2182 T3460 T3459 compound duplex,segments
R2183 T3461 T3462 advmod when,contains
R2184 T3462 T3457 advcl contains,unwinds
R2185 T3463 T3464 det the,segment
R2186 T3464 T3462 nsubj segment,contains
R2187 T3465 T3464 amod central,segment
R2188 T3466 T3467 amod single,stranded
R2189 T3467 T3464 amod stranded,segment
R2190 T3468 T3467 punct -,stranded
R2191 T3469 T3470 compound thymine,stretches
R2192 T3470 T3462 dobj stretches,contains
R2193 T3471 T3472 punct (,13
R2194 T3472 T3462 parataxis 13,contains
R2195 T3473 T3472 punct ),13
R2196 T3474 T3445 punct .,binds
R2197 T3476 T3477 prep In,conducted
R2198 T3478 T3476 pobj order,In
R2199 T3479 T3480 aux to,examine
R2200 T3480 T3478 acl examine,order
R2201 T3481 T3482 det the,mode
R2202 T3482 T3480 dobj mode,examine
R2203 T3483 T3482 prep of,mode
R2204 T3484 T3483 pobj binding,of
R2205 T3485 T3484 prep of,binding
R2206 T3486 T3485 pobj Mcm4,of
R2207 T3487 T3486 punct /,Mcm4
R2208 T3488 T3486 nummod 6,Mcm4
R2209 T3489 T3486 punct /,Mcm4
R2210 T3490 T3486 nummod 7,Mcm4
R2211 T3491 T3484 prep on,binding
R2212 T3492 T3493 compound bubble,DNAs
R2213 T3493 T3491 pobj DNAs,on
R2214 T3494 T3477 punct ", ",conducted
R2215 T3495 T3477 nsubj we,conducted
R2216 T3496 T3497 compound nuclease,assays
R2217 T3497 T3477 dobj assays,conducted
R2218 T3498 T3497 compound protection,assays
R2219 T3499 T3477 advcl using,conducted
R2220 T3500 T3501 amod labeled,DNAs
R2221 T3501 T3499 dobj DNAs,using
R2222 T3502 T3503 compound bubble,substrate
R2223 T3503 T3501 compound substrate,DNAs
R2224 T3504 T3501 cc and,DNAs
R2225 T3505 T3501 conj Mcm4,DNAs
R2226 T3506 T3505 punct /,Mcm4
R2227 T3507 T3505 nummod 6,Mcm4
R2228 T3508 T3505 punct /,Mcm4
R2229 T3509 T3505 nummod 7,Mcm4
R2230 T3510 T3477 prep in,conducted
R2231 T3511 T3512 det the,presence
R2232 T3512 T3510 pobj presence,in
R2233 T3513 T3512 prep of,presence
R2234 T3514 T3515 nmod ATP,S
R2235 T3515 T3513 pobj S,of
R2236 T3516 T3515 punct -,S
R2237 T3517 T3515 punct γ,S
R2238 T3518 T3515 punct -,S
R2239 T3519 T3520 dep which,permits
R2240 T3520 T3515 relcl permits,S
R2241 T3521 T3520 dobj binding,permits
R2242 T3522 T3521 prep to,binding
R2243 T3523 T3524 compound substrate,DNA
R2244 T3524 T3522 pobj DNA,to
R2245 T3525 T3520 cc but,permits
R2246 T3526 T3527 aux does,mobilize
R2247 T3527 T3520 conj mobilize,permits
R2248 T3528 T3527 neg not,mobilize
R2249 T3529 T3530 det the,helicase
R2250 T3530 T3527 dobj helicase,mobilize
R2251 T3531 T3477 punct .,conducted
R2252 T3533 T3534 prep At,detected
R2253 T3535 T3536 det an,concentration
R2254 T3536 T3533 pobj concentration,At
R2255 T3537 T3536 amod optimum,concentration
R2256 T3538 T3536 prep of,concentration
R2257 T3539 T3538 pobj DNase,of
R2258 T3540 T3539 nummod I,DNase
R2259 T3541 T3534 punct ", ",detected
R2260 T3542 T3543 amod strong,cleavages
R2261 T3543 T3534 nsubjpass cleavages,detected
R2262 T3544 T3534 auxpass were,detected
R2263 T3545 T3534 prep on,detected
R2264 T3546 T3547 det the,regions
R2265 T3547 T3545 pobj regions,on
R2266 T3548 T3549 nummod 21,bp
R2267 T3549 T3547 compound bp,regions
R2268 T3550 T3547 compound duplex,regions
R2269 T3551 T3534 prep at,detected
R2270 T3552 T3553 det both,ends
R2271 T3553 T3551 pobj ends,at
R2272 T3554 T3553 prep of,ends
R2273 T3555 T3556 det the,substrates
R2274 T3556 T3554 pobj substrates,of
R2275 T3557 T3534 punct ", ",detected
R2276 T3558 T3559 mark whereas,detected
R2277 T3559 T3534 advcl detected,detected
R2278 T3560 T3561 amod weaker,cleavages
R2279 T3561 T3559 nsubjpass cleavages,detected
R2280 T3562 T3559 auxpass were,detected
R2281 T3563 T3559 prep on,detected
R2282 T3564 T3565 det the,region
R2283 T3565 T3563 pobj region,on
R2284 T3566 T3565 amod central,region
R2285 T3567 T3568 amod single,stranded
R2286 T3568 T3565 amod stranded,region
R2287 T3569 T3568 punct -,stranded
R2288 T3570 T3559 punct ", ",detected
R2289 T3571 T3559 advcl consistent,detected
R2290 T3572 T3571 prep with,consistent
R2291 T3573 T3572 pobj preference,with
R2292 T3574 T3573 prep of,preference
R2293 T3575 T3574 pobj DNase,of
R2294 T3576 T3575 nummod I,DNase
R2295 T3577 T3573 prep to,preference
R2296 T3578 T3579 amod double,stranded
R2297 T3579 T3581 amod stranded,DNA
R2298 T3580 T3579 punct -,stranded
R2299 T3581 T3577 pobj DNA,to
R2300 T3582 T3534 punct .,detected
R2301 T3584 T3585 prep With,detected
R2302 T3586 T3587 det the,substrate
R2303 T3587 T3584 pobj substrate,With
R2304 T3588 T3587 nmod Bub66,substrate
R2305 T3589 T3588 punct /,Bub66
R2306 T3590 T3588 appos T,Bub66
R2307 T3591 T3590 punct -,T
R2308 T3592 T3590 amod rich,T
R2309 T3593 T3585 punct ", ",detected
R2310 T3594 T3595 amod strong,protection
R2311 T3595 T3585 nsubjpass protection,detected
R2312 T3596 T3585 auxpass was,detected
R2313 T3597 T3585 prep on,detected
R2314 T3598 T3599 det the,regions
R2315 T3599 T3597 pobj regions,on
R2316 T3600 T3599 amod entire,regions
R2317 T3601 T3602 amod single,stranded
R2318 T3602 T3599 amod stranded,regions
R2319 T3603 T3602 punct -,stranded
R2320 T3604 T3599 prep of,regions
R2321 T3605 T3606 preconj both,top
R2322 T3606 T3607 amod top,strands
R2323 T3607 T3604 pobj strands,of
R2324 T3608 T3606 cc and,top
R2325 T3609 T3606 conj bottom,top
R2326 T3610 T3585 prep with,detected
R2327 T3611 T3612 amod increasing,concentration
R2328 T3612 T3610 pobj concentration,with
R2329 T3613 T3612 prep of,concentration
R2330 T3614 T3613 pobj Mcm4,of
R2331 T3615 T3614 punct /,Mcm4
R2332 T3616 T3614 nummod 6,Mcm4
R2333 T3617 T3614 punct /,Mcm4
R2334 T3618 T3614 nummod 7,Mcm4
R2335 T3619 T3585 punct ", ",detected
R2336 T3620 T3585 advcl consistent,detected
R2337 T3621 T3620 prep with,consistent
R2338 T3622 T3623 amod high,affinity
R2339 T3623 T3621 pobj affinity,with
R2340 T3624 T3623 prep of,affinity
R2341 T3625 T3624 pobj Mcm4,of
R2342 T3626 T3625 punct /,Mcm4
R2343 T3627 T3625 nummod 6,Mcm4
R2344 T3628 T3625 punct /,Mcm4
R2345 T3629 T3625 nummod 7,Mcm4
R2346 T3630 T3623 prep to,affinity
R2347 T3631 T3632 nmod T,sequences
R2348 T3632 T3630 pobj sequences,to
R2349 T3633 T3631 punct -,T
R2350 T3634 T3631 amod rich,T
R2351 T3635 T3632 compound bubble,sequences
R2352 T3636 T3637 punct (,1A
R2353 T3637 T3585 parataxis 1A,detected
R2354 T3638 T3637 compound Figure,1A
R2355 T3639 T3637 punct ),1A
R2356 T3640 T3585 punct .,detected
R2357 T3642 T3643 amod Similar,protection
R2358 T3643 T3648 nsubjpass protection,detected
R2359 T3644 T3642 punct ", ",Similar
R2360 T3645 T3642 cc but,Similar
R2361 T3646 T3647 advmod less,significant
R2362 T3647 T3642 conj significant,Similar
R2363 T3649 T3648 auxpass was,detected
R2364 T3650 T3648 prep on,detected
R2365 T3651 T3652 det the,segment
R2366 T3652 T3650 pobj segment,on
R2367 T3653 T3654 amod single,stranded
R2368 T3654 T3652 amod stranded,segment
R2369 T3655 T3654 punct -,stranded
R2370 T3656 T3652 compound DNA,segment
R2371 T3657 T3652 prep with,segment
R2372 T3658 T3659 compound P1,nucleases
R2373 T3659 T3657 pobj nucleases,with
R2374 T3660 T3661 punct (,1A
R2375 T3661 T3652 parataxis 1A,segment
R2376 T3662 T3661 compound Figure,1A
R2377 T3663 T3661 punct ),1A
R2378 T3664 T3652 punct ", ",segment
R2379 T3665 T3666 dep which,is
R2380 T3666 T3652 relcl is,segment
R2381 T3667 T3666 acomp specific,is
R2382 T3668 T3667 prep to,specific
R2383 T3669 T3670 amod single,stranded
R2384 T3670 T3672 amod stranded,DNA
R2385 T3671 T3670 punct -,stranded
R2386 T3672 T3668 pobj DNA,to
R2387 T3673 T3648 punct .,detected
R2388 T3675 T3676 det The,results
R2389 T3676 T3677 nsubj results,indicate
R2390 T3678 T3679 mark that,loaded
R2391 T3679 T3677 ccomp loaded,indicate
R2392 T3680 T3681 det the,complex
R2393 T3681 T3679 nsubjpass complex,loaded
R2394 T3682 T3681 compound Mcm,complex
R2395 T3683 T3679 auxpass is,loaded
R2396 T3684 T3679 prep onto,loaded
R2397 T3685 T3686 compound bubble,DNA
R2398 T3686 T3684 pobj DNA,onto
R2399 T3687 T3679 prep through,loaded
R2400 T3688 T3687 pobj binding,through
R2401 T3689 T3688 prep to,binding
R2402 T3690 T3691 det both,strands
R2403 T3691 T3689 pobj strands,to
R2404 T3692 T3691 prep of,strands
R2405 T3693 T3694 det the,region
R2406 T3694 T3692 pobj region,of
R2407 T3695 T3696 amod single,stranded
R2408 T3696 T3694 amod stranded,region
R2409 T3697 T3696 punct -,stranded
R2410 T3698 T3677 punct .,indicate
R2411 T3700 T3701 amod Careful,examination
R2412 T3701 T3702 nsubj examination,indicated
R2413 T3703 T3701 prep of,examination
R2414 T3704 T3705 nmod Mcm4,footprints
R2415 T3705 T3703 pobj footprints,of
R2416 T3706 T3704 punct /,Mcm4
R2417 T3707 T3704 nummod 6,Mcm4
R2418 T3708 T3704 punct /,Mcm4
R2419 T3709 T3704 nummod 7,Mcm4
R2420 T3710 T3705 prep on,footprints
R2421 T3711 T3712 det a,bubble
R2422 T3712 T3710 pobj bubble,on
R2423 T3713 T3714 amod strong,protection
R2424 T3714 T3702 dobj protection,indicated
R2425 T3715 T3714 prep on,protection
R2426 T3716 T3717 det the,half
R2427 T3717 T3715 pobj half,on
R2428 T3718 T3717 nummod 5,half
R2429 T3719 T3718 punct ′,5
R2430 T3720 T3717 punct -,half
R2431 T3721 T3717 prep of,half
R2432 T3722 T3723 det the,strand
R2433 T3723 T3721 pobj strand,of
R2434 T3724 T3723 amod top,strand
R2435 T3725 T3714 cc and,protection
R2436 T3726 T3727 amod moderate,protection
R2437 T3727 T3714 conj protection,protection
R2438 T3728 T3727 prep on,protection
R2439 T3729 T3730 det the,half
R2440 T3730 T3728 pobj half,on
R2441 T3731 T3730 amod remaining,half
R2442 T3732 T3730 nummod 3,half
R2443 T3733 T3732 punct ′,3
R2444 T3734 T3730 punct -,half
R2445 T3735 T3728 punct ", ",on
R2446 T3736 T3737 advmod as,as
R2447 T3737 T3728 cc as,on
R2448 T3738 T3737 advmod well,as
R2449 T3739 T3728 conj on,on
R2450 T3740 T3741 amod several,segment
R2451 T3741 T3739 pobj segment,on
R2452 T3742 T3743 compound base,pair
R2453 T3743 T3741 compound pair,segment
R2454 T3744 T3743 punct -,pair
R2455 T3745 T3741 compound duplex,segment
R2456 T3746 T3741 amod adjacent,segment
R2457 T3747 T3746 prep to,adjacent
R2458 T3748 T3749 det the,point
R2459 T3749 T3747 pobj point,to
R2460 T3750 T3749 compound branch,point
R2461 T3751 T3752 punct (,1A
R2462 T3752 T3739 parataxis 1A,on
R2463 T3753 T3752 compound Figure,1A
R2464 T3754 T3752 cc and,1A
R2465 T3755 T3752 conj data,1A
R2466 T3756 T3757 neg not,shown
R2467 T3757 T3755 acl shown,data
R2468 T3758 T3752 punct ),1A
R2469 T3759 T3702 punct .,indicated
R2470 T3761 T3762 det A,pattern
R2471 T3762 T3764 nsubjpass pattern,observed
R2472 T3763 T3762 amod similar,pattern
R2473 T3765 T3762 prep of,pattern
R2474 T3766 T3765 pobj protection,of
R2475 T3767 T3764 auxpass was,observed
R2476 T3768 T3764 advmod also,observed
R2477 T3769 T3764 prep on,observed
R2478 T3770 T3771 det the,strand
R2479 T3771 T3769 pobj strand,on
R2480 T3772 T3771 amod bottom,strand
R2481 T3773 T3764 punct .,observed
R2482 T3775 T3776 nsubj This,suggests
R2483 T3777 T3778 mark that,bind
R2484 T3778 T3776 ccomp bind,suggests
R2485 T3779 T3778 nsubj Mcm4,bind
R2486 T3780 T3779 punct /,Mcm4
R2487 T3781 T3779 nummod 6,Mcm4
R2488 T3782 T3779 punct /,Mcm4
R2489 T3783 T3779 nummod 7,Mcm4
R2490 T3784 T3778 aux may,bind
R2491 T3785 T3778 prep to,bind
R2492 T3786 T3787 det a,substrate
R2493 T3787 T3785 pobj substrate,to
R2494 T3788 T3787 compound replication,substrate
R2495 T3789 T3787 compound bubble,substrate
R2496 T3790 T3787 prep with,substrate
R2497 T3791 T3792 det a,symmetry
R2498 T3792 T3790 pobj symmetry,with
R2499 T3793 T3792 nummod 2-fold,symmetry
R2500 T3794 T3778 prep as,bind
R2501 T3795 T3796 det a,hexamer
R2502 T3796 T3794 pobj hexamer,as
R2503 T3797 T3796 amod double,hexamer
R2504 T3798 T3799 punct (,1A
R2505 T3799 T3796 parataxis 1A,hexamer
R2506 T3800 T3799 compound Figure,1A
R2507 T3801 T3799 punct ", ",1A
R2508 T3802 T3799 advcl see,1A
R2509 T3803 T3804 det the,scheme
R2510 T3804 T3802 dobj scheme,see
R2511 T3805 T3804 amod lower,scheme
R2512 T3806 T3799 punct ),1A
R2513 T3807 T3778 punct ", ",bind
R2514 T3808 T3778 prep in,bind
R2515 T3809 T3810 det a,manner
R2516 T3810 T3808 pobj manner,in
R2517 T3811 T3810 amod similar,manner
R2518 T3812 T3811 prep to,similar
R2519 T3813 T3814 compound SV40,antigen
R2520 T3814 T3812 pobj antigen,to
R2521 T3815 T3814 compound T,antigen
R2522 T3816 T3814 punct -,antigen
R2523 T3817 T3818 punct (,21
R2524 T3818 T3778 parataxis 21,bind
R2525 T3819 T3818 punct ),21
R2526 T3820 T3776 punct .,suggests
R2527 T3822 T3823 compound Nuclease,protection
R2528 T3823 T3824 compound protection,assays
R2529 T3824 T3825 nsubjpass assays,conducted
R2530 T3826 T3825 auxpass were,conducted
R2531 T3827 T3825 advmod also,conducted
R2532 T3828 T3825 prep on,conducted
R2533 T3829 T3830 det a,structure
R2534 T3830 T3828 pobj structure,on
R2535 T3831 T3832 npadvmod T,tailed
R2536 T3832 T3830 amod tailed,structure
R2537 T3833 T3832 punct -,tailed
R2538 T3834 T3835 compound Y,fork
R2539 T3835 T3830 compound fork,structure
R2540 T3836 T3835 punct -,fork
R2541 T3837 T3838 punct (,1B
R2542 T3838 T3825 parataxis 1B,conducted
R2543 T3839 T3838 compound Figure,1B
R2544 T3840 T3838 punct ),1B
R2545 T3841 T3825 punct .,conducted
R2546 T3843 T3844 preconj Not,region
R2547 T3844 T3851 nsubjpass region,protected
R2548 T3845 T3843 advmod only,Not
R2549 T3846 T3844 det the,region
R2550 T3847 T3848 amod single,stranded
R2551 T3848 T3844 amod stranded,region
R2552 T3849 T3848 punct -,stranded
R2553 T3850 T3844 compound tail,region
R2554 T3852 T3844 cc but,region
R2555 T3853 T3852 advmod also,but
R2556 T3854 T3855 det the,DNA
R2557 T3855 T3844 conj DNA,region
R2558 T3856 T3857 nummod 7,bp
R2559 T3857 T3855 compound bp,DNA
R2560 T3858 T3855 compound duplex,DNA
R2561 T3859 T3855 amod adjacent,DNA
R2562 T3860 T3859 prep to,adjacent
R2563 T3861 T3862 det the,junction
R2564 T3862 T3860 pobj junction,to
R2565 T3863 T3862 nmod duplex,junction
R2566 T3864 T3863 punct -,duplex
R2567 T3865 T3863 prep to,duplex
R2568 T3866 T3865 punct -,to
R2569 T3867 T3868 amod single,strand
R2570 T3868 T3865 pobj strand,to
R2571 T3869 T3868 punct -,strand
R2572 T3870 T3851 auxpass were,protected
R2573 T3871 T3851 agent by,protected
R2574 T3872 T3873 compound Mcm,binding
R2575 T3873 T3871 pobj binding,by
R2576 T3874 T3873 prep from,binding
R2577 T3875 T3876 compound DNaseI,digestion
R2578 T3876 T3874 pobj digestion,from
R2579 T3877 T3851 punct .,protected
R2580 T3879 T3880 det These,results
R2581 T3880 T3881 nsubj results,indicate
R2582 T3882 T3883 mark that,interacts
R2583 T3883 T3881 advcl interacts,indicate
R2584 T3884 T3885 nmod Mcm4,protein
R2585 T3885 T3883 nsubj protein,interacts
R2586 T3886 T3884 punct /,Mcm4
R2587 T3887 T3884 nummod 6,Mcm4
R2588 T3888 T3884 punct /,Mcm4
R2589 T3889 T3884 nummod 7,Mcm4
R2590 T3890 T3883 advmod primarily,interacts
R2591 T3891 T3883 prep with,interacts
R2592 T3892 T3893 amod single,stranded
R2593 T3893 T3895 amod stranded,region
R2594 T3894 T3893 punct -,stranded
R2595 T3895 T3891 pobj region,with
R2596 T3896 T3895 compound DNA,region
R2597 T3897 T3883 cc and,interacts
R2598 T3898 T3899 mark that,spans
R2599 T3899 T3883 conj spans,interacts
R2600 T3900 T3901 det the,interaction
R2601 T3901 T3899 nsubj interaction,spans
R2602 T3902 T3899 advmod also,spans
R2603 T3903 T3904 det the,segments
R2604 T3904 T3899 dobj segments,spans
R2605 T3905 T3904 compound duplex,segments
R2606 T3906 T3904 prep near,segments
R2607 T3907 T3908 det the,branchpoint
R2608 T3908 T3906 pobj branchpoint,near
R2609 T3909 T3908 prep of,branchpoint
R2610 T3910 T3911 det the,fork
R2611 T3911 T3909 pobj fork,of
R2612 T3912 T3911 compound replication,fork
R2613 T3913 T3881 punct .,indicate

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3352 0-4 PR_EXT:000010246 denotes Mcm4
T3353 0-16 GO:0097373 denotes Mcm4/6/7 complex
T3354 46-65 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3355 74-78 PR_EXT:000010246 denotes Mcm4
T3356 74-82 GO:0097373 denotes Mcm4/6/7
T3357 83-88 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T3358 101-104 CHEBI_SO_EXT:DNA denotes DNA
T3359 132-138 SO:0000985 denotes duplex
T3360 165-180 SO:0000984 denotes single-stranded
T3361 198-205 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T3362 254-261 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3363 265-269 PR_EXT:000010246 denotes Mcm4
T3364 265-273 GO:0097373 denotes Mcm4/6/7
T3365 284-288 CHEBI_SO_EXT:DNA denotes DNAs
T3366 303-311 GO_EXT:0004518 denotes nuclease
T3367 336-343 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T3368 361-365 CHEBI_SO_EXT:DNA denotes DNAs
T3369 370-374 PR_EXT:000010246 denotes Mcm4
T3370 370-378 GO:0097373 denotes Mcm4/6/7
T3371 398-405 CHEBI:27575 denotes ATP-γ-S
T3372 420-427 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3373 441-444 CHEBI_SO_EXT:DNA denotes DNA
T3374 458-466 GO_EXT:biological_recruitment denotes mobilize
T3375 471-479 GO_EXT:0004386 denotes helicase
T3376 512-519 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T3377 528-537 MOP:0000780 denotes cleavages
T3378 562-564 SO_EXT:0000028 denotes bp
T3379 565-571 SO:0000985 denotes duplex
T3380 627-636 MOP:0000780 denotes cleavages
T3381 666-681 SO:0000984 denotes single-stranded
T3382 720-727 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T3383 731-750 CHEBI_SO_EXT:double_stranded_DNA denotes double-stranded DNA
T3384 767-768 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T3385 830-845 SO:0000984 denotes single-stranded
T3386 918-922 PR_EXT:000010246 denotes Mcm4
T3387 918-926 GO:0097373 denotes Mcm4/6/7
T3388 961-965 PR_EXT:000010246 denotes Mcm4
T3389 961-969 GO:0097373 denotes Mcm4/6/7
T3390 973-974 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T3391 987-996 SO_EXT:biological_sequence denotes sequences
T3392 1071-1090 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3393 1107-1116 GO_EXT:0004518 denotes nucleases
T3394 1151-1170 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3395 1202-1213 GO:0042555 denotes Mcm complex
T3396 1236-1239 CHEBI_SO_EXT:DNA denotes DNA
T3397 1248-1255 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3398 1279-1294 SO:0000984 denotes single-stranded
T3399 1326-1330 PR_EXT:000010246 denotes Mcm4
T3400 1326-1334 GO:0097373 denotes Mcm4/6/7
T3401 1491-1495 CHEBI_SO_EXT:base denotes base
T3402 1491-1500 SO_EXT:0000028 denotes base-pair
T3403 1501-1507 SO:0000985 denotes duplex
T3404 1668-1672 PR_EXT:000010246 denotes Mcm4
T3405 1668-1676 GO:0097373 denotes Mcm4/6/7
T3406 1681-1685 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T3407 1691-1702 GO:0006260 denotes replication
T3408 1748-1762 GO_EXT:double_hexameric_macromolecular_complex denotes double hexamer
T3409 1821-1825 NCBITaxon:10633 denotes SV40
T3410 1828-1835 CHEBI_EXT:59132 denotes antigen
T3411 1842-1850 GO_EXT:0004518 denotes Nuclease
T3412 1905-1909 GO:0005657 denotes fork
T3413 1946-1961 SO:0000984 denotes single-stranded
T3414 1989-1991 SO_EXT:0000028 denotes bp
T3415 1992-2002 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T3416 2019-2025 SO:0000985 denotes duplex
T3417 2029-2042 SO:0000984 denotes single-strand
T3418 2070-2073 GO:0042555 denotes Mcm
T3419 2074-2081 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3420 2087-2093 GO_PR_EXT:deoxyribonuclease_I denotes DNaseI
T3421 2133-2137 PR_EXT:000010246 denotes Mcm4
T3422 2133-2141 GO:0097373 denotes Mcm4/6/7
T3423 2142-2149 CHEBI_PR_EXT:protein denotes protein
T3424 2175-2194 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3425 2242-2248 SO:0000985 denotes duplex
T3426 2286-2297 GO:0006260 denotes replication
T3427 2286-2302 GO:0005657 denotes replication fork

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3303 0-4 PR:000010246 denotes Mcm4
T3304 0-16 GO:0097373 denotes Mcm4/6/7 complex
T3305 46-61 SO:0000984 denotes single-stranded
T3306 74-78 PR:000010246 denotes Mcm4
T3307 74-82 GO:0097373 denotes Mcm4/6/7
T3308 132-138 SO:0000985 denotes duplex
T3309 165-180 SO:0000984 denotes single-stranded
T3310 265-269 PR:000010246 denotes Mcm4
T3311 265-273 GO:0097373 denotes Mcm4/6/7
T3312 370-374 PR:000010246 denotes Mcm4
T3313 370-378 GO:0097373 denotes Mcm4/6/7
T3314 398-405 CHEBI:27575 denotes ATP-γ-S
T3315 528-537 MOP:0000780 denotes cleavages
T3316 562-564 SO:0000028 denotes bp
T3317 565-571 SO:0000985 denotes duplex
T3318 627-636 MOP:0000780 denotes cleavages
T3319 666-681 SO:0000984 denotes single-stranded
T3320 731-746 SO:0000985 denotes double-stranded
T3321 830-845 SO:0000984 denotes single-stranded
T3322 918-922 PR:000010246 denotes Mcm4
T3323 918-926 GO:0097373 denotes Mcm4/6/7
T3324 961-965 PR:000010246 denotes Mcm4
T3325 961-969 GO:0097373 denotes Mcm4/6/7
T3326 1071-1086 SO:0000984 denotes single-stranded
T3327 1151-1166 SO:0000984 denotes single-stranded
T3328 1202-1213 GO:0042555 denotes Mcm complex
T3329 1279-1294 SO:0000984 denotes single-stranded
T3330 1326-1330 PR:000010246 denotes Mcm4
T3331 1326-1334 GO:0097373 denotes Mcm4/6/7
T3332 1491-1500 SO:0000028 denotes base-pair
T3333 1501-1507 SO:0000985 denotes duplex
T3334 1668-1672 PR:000010246 denotes Mcm4
T3335 1668-1676 GO:0097373 denotes Mcm4/6/7
T3336 1691-1702 GO:0006260 denotes replication
T3337 1821-1825 NCBITaxon:10633 denotes SV40
T3338 1828-1835 CHEBI:59132 denotes antigen
T3339 1905-1909 GO:0005657 denotes fork
T3340 1946-1961 SO:0000984 denotes single-stranded
T3341 1989-1991 SO:0000028 denotes bp
T3342 1992-1998 SO:0000985 denotes duplex
T3343 2019-2025 SO:0000985 denotes duplex
T3344 2029-2042 SO:0000984 denotes single-strand
T3345 2070-2073 GO:0042555 denotes Mcm
T3346 2133-2137 PR:000010246 denotes Mcm4
T3347 2133-2141 GO:0097373 denotes Mcm4/6/7
T3348 2175-2190 SO:0000984 denotes single-stranded
T3349 2242-2248 SO:0000985 denotes duplex
T3350 2286-2297 GO:0006260 denotes replication
T3351 2286-2302 GO:0005657 denotes replication fork

2_test

Id Subject Object Predicate Lexical cue
15917436-14609960-76775508 217-219 14609960 denotes 13
15917436-9765408-76775509 1837-1839 9765408 denotes 21