> top > docs > PMC:1140370 > spans > 10895-28058 > annotations

PMC:1140370 / 10895-28058 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T3477 302-311 VBD denotes conducted
T3428 9-13 NN denotes Mcm4
T3429 18-25 NN denotes complex
T3430 13-14 HYPH denotes /
T3431 14-15 CD denotes 6
T3432 15-16 HYPH denotes /
T3433 16-17 CD denotes 7
T3434 36-45 VBZ denotes interacts
T3435 26-35 RB denotes primarily
T3436 46-50 IN denotes with
T3437 51-54 DT denotes the
T3438 75-82 NN denotes segment
T3439 55-61 JJ denotes single
T3440 62-70 VBN denotes stranded
T3441 61-62 HYPH denotes -
T3442 71-74 NN denotes DNA
T3443 82-230 sentence denotes Mcm4/6/7 binds to ‘bubble’ DNA substrates and unwinds the duplex segments when the central single-stranded segment contains thymine stretches (13).
T3444 83-87 NN denotes Mcm4
T3445 92-97 VBZ denotes binds
T3446 87-88 HYPH denotes /
T3447 88-89 CD denotes 6
T3448 89-90 HYPH denotes /
T3449 90-91 CD denotes 7
T3450 98-100 IN denotes to
T3451 101-102 `` denotes
T3452 114-124 NNS denotes substrates
T3453 102-108 NN denotes bubble
T3454 108-109 '' denotes
T3455 110-113 NN denotes DNA
T3456 125-128 CC denotes and
T3457 129-136 VBZ denotes unwinds
T3458 137-140 DT denotes the
T3459 148-156 NNS denotes segments
T3460 141-147 NN denotes duplex
T3461 157-161 WRB denotes when
T3462 198-206 VBZ denotes contains
T3463 162-165 DT denotes the
T3464 190-197 NN denotes segment
T3465 166-173 JJ denotes central
T3466 174-180 JJ denotes single
T3467 181-189 VBN denotes stranded
T3468 180-181 HYPH denotes -
T3469 207-214 NN denotes thymine
T3470 215-224 NNS denotes stretches
T3471 225-226 -LRB- denotes (
T3472 226-228 CD denotes 13
T3473 228-229 -RRB- denotes )
T3474 229-230 . denotes .
T3475 230-489 sentence denotes In order to examine the mode of binding of Mcm4/6/7 on bubble DNAs, we conducted nuclease protection assays using labeled bubble substrate DNAs and Mcm4/6/7 in the presence of ATP-γ-S which permits binding to substrate DNA but does not mobilize the helicase.
T3476 231-233 IN denotes In
T3478 234-239 NN denotes order
T3479 240-242 TO denotes to
T3480 243-250 VB denotes examine
T3481 251-254 DT denotes the
T3482 255-259 NN denotes mode
T3483 260-262 IN denotes of
T3484 263-270 NN denotes binding
T3485 271-273 IN denotes of
T3486 274-278 NN denotes Mcm4
T3487 278-279 HYPH denotes /
T3488 279-280 CD denotes 6
T3489 280-281 HYPH denotes /
T3490 281-282 CD denotes 7
T3491 283-285 IN denotes on
T3492 286-292 NN denotes bubble
T3493 293-297 NNS denotes DNAs
T3494 297-299 , denotes ,
T3495 299-301 PRP denotes we
T3496 312-320 NN denotes nuclease
T3497 332-338 NNS denotes assays
T3498 321-331 NN denotes protection
T3499 339-344 VBG denotes using
T3500 345-352 VBN denotes labeled
T3501 370-374 NNS denotes DNAs
T3502 353-359 NN denotes bubble
T3503 360-369 NN denotes substrate
T3504 375-378 CC denotes and
T3505 379-383 NN denotes Mcm4
T3506 383-384 HYPH denotes /
T3507 384-385 CD denotes 6
T3508 385-386 HYPH denotes /
T3509 386-387 CD denotes 7
T3510 388-390 IN denotes in
T3511 391-394 DT denotes the
T3512 395-403 NN denotes presence
T3513 404-406 IN denotes of
T3514 407-410 NN denotes ATP
T3515 413-414 NN denotes S
T3516 410-411 HYPH denotes -
T3517 411-412 SYM denotes γ
T3518 412-413 HYPH denotes -
T3519 415-420 WDT denotes which
T3520 421-428 VBZ denotes permits
T3521 429-436 NN denotes binding
T3522 437-439 IN denotes to
T3523 440-449 NN denotes substrate
T3524 450-453 NN denotes DNA
T3525 454-457 CC denotes but
T3526 458-462 VBZ denotes does
T3527 467-475 VB denotes mobilize
T3528 463-466 RB denotes not
T3529 476-479 DT denotes the
T3530 480-488 NN denotes helicase
T3531 488-489 . denotes .
T3532 489-760 sentence denotes At an optimum concentration of DNase I, strong cleavages were detected on the 21 bp duplex regions at both ends of the substrates, whereas weaker cleavages were detected on the central single-stranded region, consistent with preference of DNase I to double-stranded DNA.
T3533 490-492 IN denotes At
T3534 552-560 VBN denotes detected
T3535 493-495 DT denotes an
T3536 504-517 NN denotes concentration
T3537 496-503 JJ denotes optimum
T3538 518-520 IN denotes of
T3539 521-526 NN denotes DNase
T3540 527-528 CD denotes I
T3541 528-530 , denotes ,
T3542 530-536 JJ denotes strong
T3543 537-546 NNS denotes cleavages
T3544 547-551 VBD denotes were
T3545 561-563 IN denotes on
T3546 564-567 DT denotes the
T3547 581-588 NNS denotes regions
T3548 568-570 CD denotes 21
T3549 571-573 NN denotes bp
T3550 574-580 NN denotes duplex
T3551 589-591 IN denotes at
T3552 592-596 DT denotes both
T3553 597-601 NNS denotes ends
T3554 602-604 IN denotes of
T3555 605-608 DT denotes the
T3556 609-619 NNS denotes substrates
T3557 619-621 , denotes ,
T3558 621-628 IN denotes whereas
T3559 651-659 VBN denotes detected
T3560 629-635 JJR denotes weaker
T3561 636-645 NNS denotes cleavages
T3562 646-650 VBD denotes were
T3563 660-662 IN denotes on
T3564 663-666 DT denotes the
T3565 691-697 NN denotes region
T3566 667-674 JJ denotes central
T3567 675-681 JJ denotes single
T3568 682-690 VBN denotes stranded
T3569 681-682 HYPH denotes -
T3570 697-699 , denotes ,
T3571 699-709 JJ denotes consistent
T3572 710-714 IN denotes with
T3573 715-725 NN denotes preference
T3574 726-728 IN denotes of
T3575 729-734 NN denotes DNase
T3576 735-736 CD denotes I
T3577 737-739 IN denotes to
T3578 740-746 JJ denotes double
T3579 747-755 VBN denotes stranded
T3580 746-747 HYPH denotes -
T3581 756-759 NN denotes DNA
T3582 759-760 . denotes .
T3583 760-1018 sentence denotes With the Bub66/T-rich substrate, strong protection was detected on the entire single-stranded regions of both top and bottom strands with increasing concentration of Mcm4/6/7, consistent with high affinity of Mcm4/6/7 to T-rich bubble sequences (Figure 1A).
T3584 761-765 IN denotes With
T3585 816-824 VBN denotes detected
T3586 766-769 DT denotes the
T3587 783-792 NN denotes substrate
T3588 770-775 NN denotes Bub66
T3589 775-776 HYPH denotes /
T3590 776-777 NN denotes T
T3591 777-778 HYPH denotes -
T3592 778-782 JJ denotes rich
T3593 792-794 , denotes ,
T3594 794-800 JJ denotes strong
T3595 801-811 NN denotes protection
T3596 812-815 VBD denotes was
T3597 825-827 IN denotes on
T3598 828-831 DT denotes the
T3599 855-862 NNS denotes regions
T3600 832-838 JJ denotes entire
T3601 839-845 JJ denotes single
T3602 846-854 VBN denotes stranded
T3603 845-846 HYPH denotes -
T3604 863-865 IN denotes of
T3605 866-870 CC denotes both
T3606 871-874 JJ denotes top
T3607 886-893 NNS denotes strands
T3608 875-878 CC denotes and
T3609 879-885 JJ denotes bottom
T3610 894-898 IN denotes with
T3611 899-909 VBG denotes increasing
T3612 910-923 NN denotes concentration
T3613 924-926 IN denotes of
T3614 927-931 NN denotes Mcm4
T3615 931-932 HYPH denotes /
T3616 932-933 CD denotes 6
T3617 933-934 HYPH denotes /
T3618 934-935 CD denotes 7
T3619 935-937 , denotes ,
T3620 937-947 JJ denotes consistent
T3621 948-952 IN denotes with
T3622 953-957 JJ denotes high
T3623 958-966 NN denotes affinity
T3624 967-969 IN denotes of
T3625 970-974 NN denotes Mcm4
T3626 974-975 HYPH denotes /
T3627 975-976 CD denotes 6
T3628 976-977 HYPH denotes /
T3629 977-978 CD denotes 7
T3630 979-981 IN denotes to
T3631 982-983 NN denotes T
T3632 996-1005 NNS denotes sequences
T3633 983-984 HYPH denotes -
T3634 984-988 JJ denotes rich
T3635 989-995 NN denotes bubble
T3636 1006-1007 -LRB- denotes (
T3637 1014-1016 NN denotes 1A
T3638 1007-1013 NN denotes Figure
T3639 1016-1017 -RRB- denotes )
T3640 1017-1018 . denotes .
T3641 1018-1180 sentence denotes Similar, but less significant protection was detected on the single-stranded DNA segment with P1 nucleases (Figure 1A), which is specific to single-stranded DNA.
T3642 1019-1026 JJ denotes Similar
T3643 1049-1059 NN denotes protection
T3644 1026-1028 , denotes ,
T3645 1028-1031 CC denotes but
T3646 1032-1036 RBR denotes less
T3647 1037-1048 JJ denotes significant
T3648 1064-1072 VBN denotes detected
T3649 1060-1063 VBD denotes was
T3650 1073-1075 IN denotes on
T3651 1076-1079 DT denotes the
T3652 1100-1107 NN denotes segment
T3653 1080-1086 JJ denotes single
T3654 1087-1095 VBN denotes stranded
T3655 1086-1087 HYPH denotes -
T3656 1096-1099 NN denotes DNA
T3657 1108-1112 IN denotes with
T3658 1113-1115 NN denotes P1
T3659 1116-1125 NNS denotes nucleases
T3660 1126-1127 -LRB- denotes (
T3661 1134-1136 NN denotes 1A
T3662 1127-1133 NN denotes Figure
T3663 1136-1137 -RRB- denotes )
T3664 1137-1139 , denotes ,
T3665 1139-1144 WDT denotes which
T3666 1145-1147 VBZ denotes is
T3667 1148-1156 JJ denotes specific
T3668 1157-1159 IN denotes to
T3669 1160-1166 JJ denotes single
T3670 1167-1175 VBN denotes stranded
T3671 1166-1167 HYPH denotes -
T3672 1176-1179 NN denotes DNA
T3673 1179-1180 . denotes .
T3674 1180-1311 sentence denotes The results indicate that the Mcm complex is loaded onto bubble DNA through binding to both strands of the single-stranded region.
T3675 1181-1184 DT denotes The
T3676 1185-1192 NNS denotes results
T3677 1193-1201 VBP denotes indicate
T3678 1202-1206 IN denotes that
T3679 1226-1232 VBN denotes loaded
T3680 1207-1210 DT denotes the
T3681 1215-1222 NN denotes complex
T3682 1211-1214 NN denotes Mcm
T3683 1223-1225 VBZ denotes is
T3684 1233-1237 IN denotes onto
T3685 1238-1244 NN denotes bubble
T3686 1245-1248 NN denotes DNA
T3687 1249-1256 IN denotes through
T3688 1257-1264 NN denotes binding
T3689 1265-1267 IN denotes to
T3690 1268-1272 DT denotes both
T3691 1273-1280 NNS denotes strands
T3692 1281-1283 IN denotes of
T3693 1284-1287 DT denotes the
T3694 1304-1310 NN denotes region
T3695 1288-1294 JJ denotes single
T3696 1295-1303 VBN denotes stranded
T3697 1294-1295 HYPH denotes -
T3698 1310-1311 . denotes .
T3699 1311-1585 sentence denotes Careful examination of Mcm4/6/7 footprints on a bubble indicated strong protection on the 5′-half of the top strand and moderate protection on the remaining 3′-half, as well as on several base-pair duplex segment adjacent to the branch point (Figure 1A and data not shown).
T3700 1312-1319 JJ denotes Careful
T3701 1320-1331 NN denotes examination
T3702 1367-1376 VBD denotes indicated
T3703 1332-1334 IN denotes of
T3704 1335-1339 NN denotes Mcm4
T3705 1344-1354 NNS denotes footprints
T3706 1339-1340 HYPH denotes /
T3707 1340-1341 CD denotes 6
T3708 1341-1342 HYPH denotes /
T3709 1342-1343 CD denotes 7
T3710 1355-1357 IN denotes on
T3711 1358-1359 DT denotes a
T3712 1360-1366 NN denotes bubble
T3713 1377-1383 JJ denotes strong
T3714 1384-1394 NN denotes protection
T3715 1395-1397 IN denotes on
T3716 1398-1401 DT denotes the
T3717 1405-1409 NN denotes half
T3718 1402-1403 CD denotes 5
T3719 1403-1404 SYM denotes
T3720 1404-1405 HYPH denotes -
T3721 1410-1412 IN denotes of
T3722 1413-1416 DT denotes the
T3723 1421-1427 NN denotes strand
T3724 1417-1420 JJ denotes top
T3725 1428-1431 CC denotes and
T3726 1432-1440 JJ denotes moderate
T3727 1441-1451 NN denotes protection
T3728 1452-1454 IN denotes on
T3729 1455-1458 DT denotes the
T3730 1472-1476 NN denotes half
T3731 1459-1468 VBG denotes remaining
T3732 1469-1470 CD denotes 3
T3733 1470-1471 SYM denotes
T3734 1471-1472 HYPH denotes -
T3735 1476-1478 , denotes ,
T3736 1478-1480 RB denotes as
T3737 1486-1488 IN denotes as
T3738 1481-1485 RB denotes well
T3739 1489-1491 IN denotes on
T3740 1492-1499 JJ denotes several
T3741 1517-1524 NN denotes segment
T3742 1500-1504 NN denotes base
T3743 1505-1509 NN denotes pair
T3744 1504-1505 HYPH denotes -
T3745 1510-1516 NN denotes duplex
T3746 1525-1533 JJ denotes adjacent
T3747 1534-1536 IN denotes to
T3748 1537-1540 DT denotes the
T3749 1548-1553 NN denotes point
T3750 1541-1547 NN denotes branch
T3751 1554-1555 -LRB- denotes (
T3752 1562-1564 NN denotes 1A
T3753 1555-1561 NN denotes Figure
T3754 1565-1568 CC denotes and
T3755 1569-1573 NNS denotes data
T3756 1574-1577 RB denotes not
T3757 1578-1583 VBN denotes shown
T3758 1583-1584 -RRB- denotes )
T3759 1584-1585 . denotes .
T3760 1585-1657 sentence denotes A similar pattern of protection was observed also on the bottom strand.
T3761 1586-1587 DT denotes A
T3762 1596-1603 NN denotes pattern
T3763 1588-1595 JJ denotes similar
T3764 1622-1630 VBN denotes observed
T3765 1604-1606 IN denotes of
T3766 1607-1617 NN denotes protection
T3767 1618-1621 VBD denotes was
T3768 1631-1635 RB denotes also
T3769 1636-1638 IN denotes on
T3770 1639-1642 DT denotes the
T3771 1650-1656 NN denotes strand
T3772 1643-1649 JJ denotes bottom
T3773 1656-1657 . denotes .
T3774 1657-1850 sentence denotes This suggests that Mcm4/6/7 may bind to a replication bubble substrate with a 2-fold symmetry as a double hexamer (Figure 1A, see the lower scheme), in a manner similar to SV40 T-antigen (21).
T3775 1658-1662 DT denotes This
T3776 1663-1671 VBZ denotes suggests
T3777 1672-1676 IN denotes that
T3778 1690-1694 VB denotes bind
T3779 1677-1681 NN denotes Mcm4
T3780 1681-1682 HYPH denotes /
T3781 1682-1683 CD denotes 6
T3782 1683-1684 HYPH denotes /
T3783 1684-1685 CD denotes 7
T3784 1686-1689 MD denotes may
T3785 1695-1697 IN denotes to
T3786 1698-1699 DT denotes a
T3787 1719-1728 NN denotes substrate
T3788 1700-1711 NN denotes replication
T3789 1712-1718 NN denotes bubble
T3790 1729-1733 IN denotes with
T3791 1734-1735 DT denotes a
T3792 1743-1751 NN denotes symmetry
T3793 1736-1742 CD denotes 2-fold
T3794 1752-1754 IN denotes as
T3795 1755-1756 DT denotes a
T3796 1764-1771 NN denotes hexamer
T3797 1757-1763 JJ denotes double
T3798 1772-1773 -LRB- denotes (
T3799 1780-1782 NN denotes 1A
T3800 1773-1779 NN denotes Figure
T3801 1782-1784 , denotes ,
T3802 1784-1787 VBP denotes see
T3803 1788-1791 DT denotes the
T3804 1798-1804 NN denotes scheme
T3805 1792-1797 JJ denotes lower
T3806 1804-1805 -RRB- denotes )
T3807 1805-1807 , denotes ,
T3808 1807-1809 IN denotes in
T3809 1810-1811 DT denotes a
T3810 1812-1818 NN denotes manner
T3811 1819-1826 JJ denotes similar
T3812 1827-1829 IN denotes to
T3813 1830-1834 NN denotes SV40
T3814 1837-1844 NN denotes antigen
T3815 1835-1836 NN denotes T
T3816 1836-1837 HYPH denotes -
T3817 1845-1846 -LRB- denotes (
T3818 1846-1848 CD denotes 21
T3819 1848-1849 -RRB- denotes )
T3820 1849-1850 . denotes .
T3821 1850-1941 sentence denotes Nuclease protection assays were conducted also on a T-tailed Y-fork structure (Figure 1B).
T3822 1851-1859 NN denotes Nuclease
T3823 1860-1870 NN denotes protection
T3824 1871-1877 NNS denotes assays
T3825 1883-1892 VBN denotes conducted
T3826 1878-1882 VBD denotes were
T3827 1893-1897 RB denotes also
T3828 1898-1900 IN denotes on
T3829 1901-1902 DT denotes a
T3830 1919-1928 NN denotes structure
T3831 1903-1904 NN denotes T
T3832 1905-1911 VBN denotes tailed
T3833 1904-1905 HYPH denotes -
T3834 1912-1913 NN denotes Y
T3835 1914-1918 NN denotes fork
T3836 1913-1914 HYPH denotes -
T3837 1929-1930 -LRB- denotes (
T3838 1937-1939 NN denotes 1B
T3839 1930-1936 NN denotes Figure
T3840 1939-1940 -RRB- denotes )
T3841 1940-1941 . denotes .
T3842 1941-2113 sentence denotes Not only the single-stranded tail region but also the 7 bp duplex DNA adjacent to the duplex-to-single-strand junction were protected by Mcm binding from DNaseI digestion.
T3843 1942-1945 RB denotes Not
T3844 1976-1982 NN denotes region
T3845 1946-1950 RB denotes only
T3846 1951-1954 DT denotes the
T3847 1955-1961 JJ denotes single
T3848 1962-1970 VBN denotes stranded
T3849 1961-1962 HYPH denotes -
T3850 1971-1975 NN denotes tail
T3851 2066-2075 VBN denotes protected
T3852 1983-1986 CC denotes but
T3853 1987-1991 RB denotes also
T3854 1992-1995 DT denotes the
T3855 2008-2011 NN denotes DNA
T3856 1996-1997 CD denotes 7
T3857 1998-2000 NN denotes bp
T3858 2001-2007 NN denotes duplex
T3859 2012-2020 JJ denotes adjacent
T3860 2021-2023 IN denotes to
T3861 2024-2027 DT denotes the
T3862 2052-2060 NN denotes junction
T3863 2028-2034 NN denotes duplex
T3864 2034-2035 HYPH denotes -
T3865 2035-2037 IN denotes to
T3866 2037-2038 HYPH denotes -
T3867 2038-2044 JJ denotes single
T3868 2045-2051 NN denotes strand
T3869 2044-2045 HYPH denotes -
T3870 2061-2065 VBD denotes were
T3871 2076-2078 IN denotes by
T3872 2079-2082 NN denotes Mcm
T3873 2083-2090 NN denotes binding
T3874 2091-2095 IN denotes from
T3875 2096-2102 NN denotes DNaseI
T3876 2103-2112 NN denotes digestion
T3877 2112-2113 . denotes .
T3878 2113-2312 sentence denotes These results indicate that Mcm4/6/7 protein primarily interacts with single-stranded DNA region and that the interaction also spans the duplex segments near the branchpoint of the replication fork.
T3879 2114-2119 DT denotes These
T3880 2120-2127 NNS denotes results
T3881 2128-2136 VBP denotes indicate
T3882 2137-2141 IN denotes that
T3883 2169-2178 VBZ denotes interacts
T3884 2142-2146 NN denotes Mcm4
T3885 2151-2158 NN denotes protein
T3886 2146-2147 HYPH denotes /
T3887 2147-2148 CD denotes 6
T3888 2148-2149 HYPH denotes /
T3889 2149-2150 CD denotes 7
T3890 2159-2168 RB denotes primarily
T3891 2179-2183 IN denotes with
T3892 2184-2190 JJ denotes single
T3893 2191-2199 VBN denotes stranded
T3894 2190-2191 HYPH denotes -
T3895 2204-2210 NN denotes region
T3896 2200-2203 NN denotes DNA
T3897 2211-2214 CC denotes and
T3898 2215-2219 IN denotes that
T3899 2241-2246 VBZ denotes spans
T3900 2220-2223 DT denotes the
T3901 2224-2235 NN denotes interaction
T3902 2236-2240 RB denotes also
T3903 2247-2250 DT denotes the
T3904 2258-2266 NNS denotes segments
T3905 2251-2257 NN denotes duplex
T3906 2267-2271 IN denotes near
T3907 2272-2275 DT denotes the
T3908 2276-2287 NN denotes branchpoint
T3909 2288-2290 IN denotes of
T3910 2291-2294 DT denotes the
T3911 2307-2311 NN denotes fork
T3912 2295-2306 NN denotes replication
T3913 2311-2312 . denotes .
T4077 2314-2323 NN denotes Formation
T4078 2363-2374 VBZ denotes facilitates
T4079 2324-2326 IN denotes of
T4080 2327-2333 JJ denotes double
T4081 2334-2343 JJ denotes hexameric
T4082 2353-2362 NNS denotes complexes
T4083 2344-2348 NN denotes Mcm4
T4084 2348-2349 HYPH denotes /
T4085 2349-2350 CD denotes 6
T4086 2350-2351 HYPH denotes /
T4087 2351-2352 CD denotes 7
T4088 2375-2383 NN denotes helicase
T4089 2384-2391 NNS denotes actions
T4090 2392-2394 IN denotes on
T4091 2395-2401 NN denotes bubble
T4092 2402-2412 NNS denotes substrates
T4093 2412-2602 sentence denotes The above results suggest that Mcm4/6/7 generates a double hexameric complex on a bubble, each hexamer of which makes symmetric contact with the 5′-proximal central single-stranded segment.
T4094 2413-2416 DT denotes The
T4095 2423-2430 NNS denotes results
T4096 2417-2422 JJ denotes above
T4097 2431-2438 VBP denotes suggest
T4098 2439-2443 IN denotes that
T4099 2453-2462 VBZ denotes generates
T4100 2444-2448 NN denotes Mcm4
T4101 2448-2449 HYPH denotes /
T4102 2449-2450 CD denotes 6
T4103 2450-2451 HYPH denotes /
T4104 2451-2452 CD denotes 7
T4105 2463-2464 DT denotes a
T4106 2482-2489 NN denotes complex
T4107 2465-2471 JJ denotes double
T4108 2472-2481 JJ denotes hexameric
T4109 2490-2492 IN denotes on
T4110 2493-2494 DT denotes a
T4111 2495-2501 NN denotes bubble
T4112 2501-2503 , denotes ,
T4113 2503-2507 DT denotes each
T4114 2508-2515 NN denotes hexamer
T4115 2525-2530 VBZ denotes makes
T4116 2516-2518 IN denotes of
T4117 2519-2524 WDT denotes which
T4118 2531-2540 JJ denotes symmetric
T4119 2541-2548 NN denotes contact
T4120 2549-2553 IN denotes with
T4121 2554-2557 DT denotes the
T4122 2594-2601 NN denotes segment
T4123 2558-2559 CD denotes 5
T4124 2561-2569 JJ denotes proximal
T4125 2559-2560 SYM denotes
T4126 2560-2561 HYPH denotes -
T4127 2570-2577 JJ denotes central
T4128 2578-2584 JJ denotes single
T4129 2585-2593 VBN denotes stranded
T4130 2584-2585 HYPH denotes -
T4131 2601-2602 . denotes .
T4132 2602-2725 sentence denotes This predicts that the single-stranded segment needs to be of a sufficient length in order to accommodate the Mcm complex.
T4133 2603-2607 DT denotes This
T4134 2608-2616 VBZ denotes predicts
T4135 2617-2621 IN denotes that
T4136 2650-2655 VBZ denotes needs
T4137 2622-2625 DT denotes the
T4138 2642-2649 NN denotes segment
T4139 2626-2632 JJ denotes single
T4140 2633-2641 VBN denotes stranded
T4141 2632-2633 HYPH denotes -
T4142 2656-2658 TO denotes to
T4143 2659-2661 VB denotes be
T4144 2662-2664 IN denotes of
T4145 2665-2666 DT denotes a
T4146 2678-2684 NN denotes length
T4147 2667-2677 JJ denotes sufficient
T4148 2685-2687 IN denotes in
T4149 2688-2693 NN denotes order
T4150 2694-2696 TO denotes to
T4151 2697-2708 VB denotes accommodate
T4152 2709-2712 DT denotes the
T4153 2717-2724 NN denotes complex
T4154 2713-2716 NN denotes Mcm
T4155 2724-2725 . denotes .
T4156 2725-2949 sentence denotes In fact, we previously showed that the Mcm4/6/7 mainly forms a single hexameric complex on bubble-20 (a bubble substrate with 20 nt long central single-stranded segment) and a double hexameric complex on bubble-60 DNA (13).
T4157 2726-2728 IN denotes In
T4158 2749-2755 VBD denotes showed
T4159 2729-2733 NN denotes fact
T4160 2733-2735 , denotes ,
T4161 2735-2737 PRP denotes we
T4162 2738-2748 RB denotes previously
T4163 2756-2760 IN denotes that
T4164 2781-2786 VBZ denotes forms
T4165 2761-2764 DT denotes the
T4166 2765-2769 NN denotes Mcm4
T4167 2769-2770 HYPH denotes /
T4168 2770-2771 CD denotes 6
T4169 2771-2772 HYPH denotes /
T4170 2772-2773 CD denotes 7
T4171 2774-2780 RB denotes mainly
T4172 2787-2788 DT denotes a
T4173 2806-2813 NN denotes complex
T4174 2789-2795 JJ denotes single
T4175 2796-2805 JJ denotes hexameric
T4176 2814-2816 IN denotes on
T4177 2817-2823 NN denotes bubble
T4178 2823-2824 HYPH denotes -
T4179 2824-2826 CD denotes 20
T4180 2827-2828 -LRB- denotes (
T4181 2828-2829 DT denotes a
T4182 2837-2846 NN denotes substrate
T4183 2830-2836 NN denotes bubble
T4184 2847-2851 IN denotes with
T4185 2852-2854 CD denotes 20
T4186 2855-2857 NN denotes nt
T4187 2858-2862 JJ denotes long
T4188 2887-2894 NN denotes segment
T4189 2863-2870 JJ denotes central
T4190 2871-2877 JJ denotes single
T4191 2878-2886 VBN denotes stranded
T4192 2877-2878 HYPH denotes -
T4193 2894-2895 -RRB- denotes )
T4194 2896-2899 CC denotes and
T4195 2900-2901 DT denotes a
T4196 2919-2926 NN denotes complex
T4197 2902-2908 JJ denotes double
T4198 2909-2918 JJ denotes hexameric
T4199 2927-2929 IN denotes on
T4200 2930-2936 NN denotes bubble
T4201 2940-2943 NN denotes DNA
T4202 2936-2937 HYPH denotes -
T4203 2937-2939 CD denotes 60
T4204 2944-2945 -LRB- denotes (
T4205 2945-2947 CD denotes 13
T4206 2947-2948 -RRB- denotes )
T4207 2948-2949 . denotes .
T4208 2949-3281 sentence denotes In order to determine the minimum requirement for double-hexamer formation, a set of synthetic bubble-like substrates (Bub-T10, Bub-T20, Bub-T30, Bub-T40 and Bub-T50) that differed in the length of the central unpaired segment were constructed, and the binding and helicase activities of Mcm4/6/7 on these substrates were examined.
T4209 2950-2952 IN denotes In
T4210 3182-3193 VBN denotes constructed
T4211 2953-2958 NN denotes order
T4212 2959-2961 TO denotes to
T4213 2962-2971 VB denotes determine
T4214 2972-2975 DT denotes the
T4215 2984-2995 NN denotes requirement
T4216 2976-2983 JJ denotes minimum
T4217 2996-2999 IN denotes for
T4218 3000-3006 JJ denotes double
T4219 3007-3014 NN denotes hexamer
T4220 3006-3007 HYPH denotes -
T4221 3015-3024 NN denotes formation
T4222 3024-3026 , denotes ,
T4223 3026-3027 DT denotes a
T4224 3028-3031 NN denotes set
T4225 3032-3034 IN denotes of
T4226 3035-3044 JJ denotes synthetic
T4227 3057-3067 NNS denotes substrates
T4228 3045-3051 NN denotes bubble
T4229 3052-3056 JJ denotes like
T4230 3051-3052 HYPH denotes -
T4231 3068-3069 -LRB- denotes (
T4232 3069-3072 NN denotes Bub
T4233 3073-3076 NN denotes T10
T4234 3072-3073 HYPH denotes -
T4235 3076-3078 , denotes ,
T4236 3078-3081 NN denotes Bub
T4237 3082-3085 NN denotes T20
T4238 3081-3082 HYPH denotes -
T4239 3085-3087 , denotes ,
T4240 3087-3090 NN denotes Bub
T4241 3091-3094 NN denotes T30
T4242 3090-3091 HYPH denotes -
T4243 3094-3096 , denotes ,
T4244 3096-3099 NN denotes Bub
T4245 3100-3103 NN denotes T40
T4246 3099-3100 HYPH denotes -
T4247 3104-3107 CC denotes and
T4248 3108-3111 NN denotes Bub
T4249 3112-3115 NN denotes T50
T4250 3111-3112 HYPH denotes -
T4251 3115-3116 -RRB- denotes )
T4252 3117-3121 WDT denotes that
T4253 3122-3130 VBD denotes differed
T4254 3131-3133 IN denotes in
T4255 3134-3137 DT denotes the
T4256 3138-3144 NN denotes length
T4257 3145-3147 IN denotes of
T4258 3148-3151 DT denotes the
T4259 3169-3176 NN denotes segment
T4260 3152-3159 JJ denotes central
T4261 3160-3168 JJ denotes unpaired
T4262 3177-3181 VBD denotes were
T4263 3193-3195 , denotes ,
T4264 3195-3198 CC denotes and
T4265 3199-3202 DT denotes the
T4266 3224-3234 NNS denotes activities
T4267 3203-3210 NN denotes binding
T4268 3211-3214 CC denotes and
T4269 3215-3223 NN denotes helicase
T4270 3272-3280 VBN denotes examined
T4271 3235-3237 IN denotes of
T4272 3238-3242 NN denotes Mcm4
T4273 3242-3243 HYPH denotes /
T4274 3243-3244 CD denotes 6
T4275 3244-3245 HYPH denotes /
T4276 3245-3246 CD denotes 7
T4277 3247-3249 IN denotes on
T4278 3250-3255 DT denotes these
T4279 3256-3266 NNS denotes substrates
T4280 3267-3271 VBD denotes were
T4281 3280-3281 . denotes .
T4282 3281-3413 sentence denotes Mcm4/6/7 was incubated with a radiolabeled synthetic bubble substrate in the presence of 0.5 mM ATP-γ-S to allow complex formation.
T4283 3282-3286 NN denotes Mcm4
T4284 3295-3304 VBN denotes incubated
T4285 3286-3287 HYPH denotes /
T4286 3287-3288 CD denotes 6
T4287 3288-3289 HYPH denotes /
T4288 3289-3290 CD denotes 7
T4289 3291-3294 VBD denotes was
T4290 3305-3309 IN denotes with
T4291 3310-3311 DT denotes a
T4292 3342-3351 NN denotes substrate
T4293 3312-3324 VBN denotes radiolabeled
T4294 3325-3334 JJ denotes synthetic
T4295 3335-3341 NN denotes bubble
T4296 3352-3354 IN denotes in
T4297 3355-3358 DT denotes the
T4298 3359-3367 NN denotes presence
T4299 3368-3370 IN denotes of
T4300 3371-3374 CD denotes 0.5
T4301 3375-3377 NN denotes mM
T4302 3384-3385 NN denotes S
T4303 3378-3381 NN denotes ATP
T4304 3381-3382 HYPH denotes -
T4305 3382-3383 SYM denotes γ
T4306 3383-3384 HYPH denotes -
T4307 3386-3388 TO denotes to
T4308 3389-3394 VB denotes allow
T4309 3395-3402 NN denotes complex
T4310 3403-3412 NN denotes formation
T4311 3412-3413 . denotes .
T4312 3413-3625 sentence denotes A half of these reaction mixtures were analyzed for DNA binding in gel shift assays (Figure 2A), and the remainder was further incubated in the presence of 10 mM ATP to measure DNA helicase activity (Figure 2B).
T4313 3414-3415 DT denotes A
T4314 3416-3420 NN denotes half
T4315 3453-3461 VBN denotes analyzed
T4316 3421-3423 IN denotes of
T4317 3424-3429 DT denotes these
T4318 3439-3447 NNS denotes mixtures
T4319 3430-3438 NN denotes reaction
T4320 3448-3452 VBD denotes were
T4321 3462-3465 IN denotes for
T4322 3466-3469 NN denotes DNA
T4323 3470-3477 NN denotes binding
T4324 3478-3480 IN denotes in
T4325 3481-3484 NN denotes gel
T4326 3485-3490 NN denotes shift
T4327 3491-3497 NNS denotes assays
T4328 3498-3499 -LRB- denotes (
T4329 3506-3508 NN denotes 2A
T4330 3499-3505 NN denotes Figure
T4331 3508-3509 -RRB- denotes )
T4332 3509-3511 , denotes ,
T4333 3511-3514 CC denotes and
T4334 3515-3518 DT denotes the
T4335 3519-3528 NN denotes remainder
T4336 3541-3550 VBN denotes incubated
T4337 3529-3532 VBD denotes was
T4338 3533-3540 RB denotes further
T4339 3551-3553 IN denotes in
T4340 3554-3557 DT denotes the
T4341 3558-3566 NN denotes presence
T4342 3567-3569 IN denotes of
T4343 3570-3572 CD denotes 10
T4344 3573-3575 NN denotes mM
T4345 3576-3579 NN denotes ATP
T4346 3580-3582 TO denotes to
T4347 3583-3590 VB denotes measure
T4348 3591-3594 NN denotes DNA
T4349 3595-3603 NN denotes helicase
T4350 3604-3612 NN denotes activity
T4351 3613-3614 -LRB- denotes (
T4352 3621-3623 NN denotes 2B
T4353 3614-3620 NN denotes Figure
T4354 3623-3624 -RRB- denotes )
T4355 3624-3625 . denotes .
T4356 3625-3798 sentence denotes Bub-10 generated only a low level of complexes with Mcm4/6/7, and Bub-20 generated primarily a single mobility-shifted form, which may contain a single hexamer of Mcm4/6/7.
T4357 3626-3629 NN denotes Bub
T4358 3633-3642 VBD denotes generated
T4359 3629-3630 HYPH denotes -
T4360 3630-3632 CD denotes 10
T4361 3643-3647 RB denotes only
T4362 3654-3659 NN denotes level
T4363 3648-3649 DT denotes a
T4364 3650-3653 JJ denotes low
T4365 3660-3662 IN denotes of
T4366 3663-3672 NNS denotes complexes
T4367 3673-3677 IN denotes with
T4368 3678-3682 NN denotes Mcm4
T4369 3682-3683 HYPH denotes /
T4370 3683-3684 CD denotes 6
T4371 3684-3685 HYPH denotes /
T4372 3685-3686 CD denotes 7
T4373 3686-3688 , denotes ,
T4374 3688-3691 CC denotes and
T4375 3692-3695 NN denotes Bub
T4376 3699-3708 VBD denotes generated
T4377 3695-3696 HYPH denotes -
T4378 3696-3698 CD denotes 20
T4379 3709-3718 RB denotes primarily
T4380 3719-3720 DT denotes a
T4381 3745-3749 NN denotes form
T4382 3721-3727 JJ denotes single
T4383 3728-3736 NN denotes mobility
T4384 3737-3744 VBN denotes shifted
T4385 3736-3737 HYPH denotes -
T4386 3749-3751 , denotes ,
T4387 3751-3756 WDT denotes which
T4388 3761-3768 VB denotes contain
T4389 3757-3760 MD denotes may
T4390 3769-3770 DT denotes a
T4391 3778-3785 NN denotes hexamer
T4392 3771-3777 JJ denotes single
T4393 3786-3788 IN denotes of
T4394 3789-3793 NN denotes Mcm4
T4395 3793-3794 HYPH denotes /
T4396 3794-3795 CD denotes 6
T4397 3795-3796 HYPH denotes /
T4398 3796-3797 CD denotes 7
T4399 3797-3798 . denotes .
T4400 3798-3954 sentence denotes On Bub-30, significant amount of complexes containing a double hexamer were generated in addition to those containing a single hexamer (Figure 2A) (13,21).
T4401 3799-3801 IN denotes On
T4402 3875-3884 VBN denotes generated
T4403 3802-3805 NN denotes Bub
T4404 3805-3806 HYPH denotes -
T4405 3806-3808 CD denotes 30
T4406 3808-3810 , denotes ,
T4407 3810-3821 JJ denotes significant
T4408 3822-3828 NN denotes amount
T4409 3829-3831 IN denotes of
T4410 3832-3841 NNS denotes complexes
T4411 3842-3852 VBG denotes containing
T4412 3853-3854 DT denotes a
T4413 3862-3869 NN denotes hexamer
T4414 3855-3861 JJ denotes double
T4415 3870-3874 VBD denotes were
T4416 3885-3887 IN denotes in
T4417 3888-3896 NN denotes addition
T4418 3897-3899 IN denotes to
T4419 3900-3905 DT denotes those
T4420 3906-3916 VBG denotes containing
T4421 3917-3918 DT denotes a
T4422 3926-3933 NN denotes hexamer
T4423 3919-3925 JJ denotes single
T4424 3934-3935 -LRB- denotes (
T4425 3942-3944 NN denotes 2A
T4426 3935-3941 NN denotes Figure
T4427 3944-3945 -RRB- denotes )
T4428 3946-3947 -LRB- denotes (
T4429 3950-3952 CD denotes 21
T4430 3947-3949 CD denotes 13
T4431 3949-3950 , denotes ,
T4432 3952-3953 -RRB- denotes )
T4433 3953-3954 . denotes .
T4434 3954-4094 sentence denotes The amounts of double hexamer complexes increased on Bub-T40 and Bub-T50 with concomitant decrease of single hexamer complexes (Figure 2A).
T4435 3955-3958 DT denotes The
T4436 3959-3966 NNS denotes amounts
T4437 3995-4004 VBD denotes increased
T4438 3967-3969 IN denotes of
T4439 3970-3976 JJ denotes double
T4440 3977-3984 NN denotes hexamer
T4441 3985-3994 NNS denotes complexes
T4442 4005-4007 IN denotes on
T4443 4008-4011 NN denotes Bub
T4444 4012-4015 NN denotes T40
T4445 4011-4012 HYPH denotes -
T4446 4016-4019 CC denotes and
T4447 4020-4023 NN denotes Bub
T4448 4024-4027 NN denotes T50
T4449 4023-4024 HYPH denotes -
T4450 4028-4032 IN denotes with
T4451 4033-4044 JJ denotes concomitant
T4452 4045-4053 NN denotes decrease
T4453 4054-4056 IN denotes of
T4454 4057-4063 JJ denotes single
T4455 4064-4071 NN denotes hexamer
T4456 4072-4081 NNS denotes complexes
T4457 4082-4083 -LRB- denotes (
T4458 4090-4092 NN denotes 2A
T4459 4083-4089 NN denotes Figure
T4460 4092-4093 -RRB- denotes )
T4461 4093-4094 . denotes .
T4462 4094-4263 sentence denotes The results indicate that a single-stranded segment of at least 40 nt long is required for efficient loading of the double-hexameric Mcm helicase on a bubble substrate.
T4463 4095-4098 DT denotes The
T4464 4099-4106 NNS denotes results
T4465 4107-4115 VBP denotes indicate
T4466 4116-4120 IN denotes that
T4467 4173-4181 VBN denotes required
T4468 4121-4122 DT denotes a
T4469 4139-4146 NN denotes segment
T4470 4123-4129 JJ denotes single
T4471 4130-4138 VBN denotes stranded
T4472 4129-4130 HYPH denotes -
T4473 4147-4149 IN denotes of
T4474 4150-4152 RB denotes at
T4475 4153-4158 RBS denotes least
T4476 4159-4161 CD denotes 40
T4477 4162-4164 NN denotes nt
T4478 4165-4169 JJ denotes long
T4479 4170-4172 VBZ denotes is
T4480 4182-4185 IN denotes for
T4481 4186-4195 JJ denotes efficient
T4482 4196-4203 NN denotes loading
T4483 4204-4206 IN denotes of
T4484 4207-4210 DT denotes the
T4485 4232-4240 NN denotes helicase
T4486 4211-4217 JJ denotes double
T4487 4218-4227 JJ denotes hexameric
T4488 4217-4218 HYPH denotes -
T4489 4228-4231 NN denotes Mcm
T4490 4241-4243 IN denotes on
T4491 4244-4245 DT denotes a
T4492 4253-4262 NN denotes substrate
T4493 4246-4252 NN denotes bubble
T4494 4262-4263 . denotes .
T4495 4263-4373 sentence denotes In DNA helicase assays, Mcm4/6/7 complex did not show helicase activity on either Bub-10 or Bub-20 substrate.
T4496 4264-4266 IN denotes In
T4497 4313-4317 VB denotes show
T4498 4267-4270 NN denotes DNA
T4499 4271-4279 NN denotes helicase
T4500 4280-4286 NNS denotes assays
T4501 4286-4288 , denotes ,
T4502 4288-4292 NN denotes Mcm4
T4503 4297-4304 NN denotes complex
T4504 4292-4293 HYPH denotes /
T4505 4293-4294 CD denotes 6
T4506 4294-4295 HYPH denotes /
T4507 4295-4296 CD denotes 7
T4508 4305-4308 VBD denotes did
T4509 4309-4312 RB denotes not
T4510 4318-4326 NN denotes helicase
T4511 4327-4335 NN denotes activity
T4512 4336-4338 IN denotes on
T4513 4339-4345 CC denotes either
T4514 4346-4349 NN denotes Bub
T4515 4363-4372 NN denotes substrate
T4516 4349-4350 HYPH denotes -
T4517 4350-4352 CD denotes 10
T4518 4353-4355 CC denotes or
T4519 4356-4359 NN denotes Bub
T4520 4359-4360 HYPH denotes -
T4521 4360-4362 CD denotes 20
T4522 4372-4373 . denotes .
T4523 4373-4490 sentence denotes The efficiency of displacement slightly improved as the length of the single-stranded segment increased up to 30 nt.
T4524 4374-4377 DT denotes The
T4525 4378-4388 NN denotes efficiency
T4526 4414-4422 VBD denotes improved
T4527 4389-4391 IN denotes of
T4528 4392-4404 NN denotes displacement
T4529 4405-4413 RB denotes slightly
T4530 4423-4425 IN denotes as
T4531 4468-4477 VBD denotes increased
T4532 4426-4429 DT denotes the
T4533 4430-4436 NN denotes length
T4534 4437-4439 IN denotes of
T4535 4440-4443 DT denotes the
T4536 4460-4467 NN denotes segment
T4537 4444-4450 JJ denotes single
T4538 4451-4459 VBN denotes stranded
T4539 4450-4451 HYPH denotes -
T4540 4478-4480 IN denotes up
T4541 4484-4486 CD denotes 30
T4542 4481-4483 IN denotes to
T4543 4487-4489 NN denotes nt
T4544 4489-4490 . denotes .
T4545 4490-4714 sentence denotes On Bub-T40 and Bub-T50, on the other hand, significant displacement was observed, indicating that a single-stranded segment of at least 40 nt long is required for efficient helicase actions on bubble substrates (Figure 2B).
T4546 4491-4493 IN denotes On
T4547 4563-4571 VBN denotes observed
T4548 4494-4497 NN denotes Bub
T4549 4498-4501 NN denotes T40
T4550 4497-4498 HYPH denotes -
T4551 4502-4505 CC denotes and
T4552 4506-4509 NN denotes Bub
T4553 4510-4513 NN denotes T50
T4554 4509-4510 HYPH denotes -
T4555 4513-4515 , denotes ,
T4556 4515-4517 IN denotes on
T4557 4518-4521 DT denotes the
T4558 4528-4532 NN denotes hand
T4559 4522-4527 JJ denotes other
T4560 4532-4534 , denotes ,
T4561 4534-4545 JJ denotes significant
T4562 4546-4558 NN denotes displacement
T4563 4559-4562 VBD denotes was
T4564 4571-4573 , denotes ,
T4565 4573-4583 VBG denotes indicating
T4566 4584-4588 IN denotes that
T4567 4641-4649 VBN denotes required
T4568 4589-4590 DT denotes a
T4569 4607-4614 NN denotes segment
T4570 4591-4597 JJ denotes single
T4571 4598-4606 VBN denotes stranded
T4572 4597-4598 HYPH denotes -
T4573 4615-4617 IN denotes of
T4574 4618-4620 RB denotes at
T4575 4621-4626 RBS denotes least
T4576 4627-4629 CD denotes 40
T4577 4630-4632 NN denotes nt
T4578 4633-4637 JJ denotes long
T4579 4638-4640 VBZ denotes is
T4580 4650-4653 IN denotes for
T4581 4654-4663 JJ denotes efficient
T4582 4673-4680 NNS denotes actions
T4583 4664-4672 NN denotes helicase
T4584 4681-4683 IN denotes on
T4585 4684-4690 NN denotes bubble
T4586 4691-4701 NNS denotes substrates
T4587 4702-4703 -LRB- denotes (
T4588 4710-4712 NN denotes 2B
T4589 4703-4709 NN denotes Figure
T4590 4712-4713 -RRB- denotes )
T4591 4713-4714 . denotes .
T4592 4714-4913 sentence denotes Taken together, the above results are consistent with the notion that the Mcm4/6/7 complex, loaded onto DNA as a double hexameric complex, efficiently unwinds the duplex region of the substrate DNA.
T4593 4715-4720 VBN denotes Taken
T4594 4749-4752 VBP denotes are
T4595 4721-4729 RB denotes together
T4596 4729-4731 , denotes ,
T4597 4731-4734 DT denotes the
T4598 4741-4748 NNS denotes results
T4599 4735-4740 JJ denotes above
T4600 4753-4763 JJ denotes consistent
T4601 4764-4768 IN denotes with
T4602 4769-4772 DT denotes the
T4603 4773-4779 NN denotes notion
T4604 4780-4784 IN denotes that
T4605 4866-4873 VBZ denotes unwinds
T4606 4785-4788 DT denotes the
T4607 4798-4805 NN denotes complex
T4608 4789-4793 NN denotes Mcm4
T4609 4793-4794 HYPH denotes /
T4610 4794-4795 CD denotes 6
T4611 4795-4796 HYPH denotes /
T4612 4796-4797 CD denotes 7
T4613 4805-4807 , denotes ,
T4614 4807-4813 VBN denotes loaded
T4615 4814-4818 IN denotes onto
T4616 4819-4822 NN denotes DNA
T4617 4823-4825 IN denotes as
T4618 4826-4827 DT denotes a
T4619 4845-4852 NN denotes complex
T4620 4828-4834 JJ denotes double
T4621 4835-4844 JJ denotes hexameric
T4622 4852-4854 , denotes ,
T4623 4854-4865 RB denotes efficiently
T4624 4874-4877 DT denotes the
T4625 4885-4891 NN denotes region
T4626 4878-4884 NN denotes duplex
T4627 4892-4894 IN denotes of
T4628 4895-4898 DT denotes the
T4629 4909-4912 NN denotes DNA
T4630 4899-4908 NN denotes substrate
T4631 4912-4913 . denotes .
T4737 4915-4919 DT denotes Both
T4738 4920-4927 NNS denotes strands
T4739 4973-4981 VBN denotes required
T4740 4928-4930 IN denotes of
T4741 4931-4938 NN denotes thymine
T4742 4939-4943 JJ denotes rich
T4743 4938-4939 HYPH denotes -
T4744 4960-4968 NNS denotes segments
T4745 4944-4950 JJ denotes single
T4746 4951-4959 VBN denotes stranded
T4747 4950-4951 HYPH denotes -
T4748 4969-4972 VBP denotes are
T4749 4982-4985 IN denotes for
T4750 4986-4995 JJ denotes efficient
T4751 4996-5005 NN denotes unwinding
T4752 5006-5008 IN denotes of
T4753 5009-5015 NN denotes bubble
T4754 5016-5019 NN denotes DNA
T4755 5020-5022 IN denotes by
T4756 5023-5027 NN denotes Mcm4
T4757 5027-5028 HYPH denotes /
T4758 5028-5029 CD denotes 6
T4759 5029-5030 HYPH denotes /
T4760 5030-5031 CD denotes 7
T4761 5031-5172 sentence denotes Symmetric binding of the Mcm4/6/7 double hexamer to bubble suggests that each hexamer catalyzes unwinding of one of the two duplex segments.
T4762 5032-5041 JJ denotes Symmetric
T4763 5042-5049 NN denotes binding
T4764 5091-5099 VBZ denotes suggests
T4765 5050-5052 IN denotes of
T4766 5053-5056 DT denotes the
T4767 5073-5080 NN denotes hexamer
T4768 5057-5061 NN denotes Mcm4
T4769 5061-5062 HYPH denotes /
T4770 5062-5063 CD denotes 6
T4771 5063-5064 HYPH denotes /
T4772 5064-5065 CD denotes 7
T4773 5066-5072 JJ denotes double
T4774 5081-5083 IN denotes to
T4775 5084-5090 NN denotes bubble
T4776 5100-5104 IN denotes that
T4777 5118-5127 VBZ denotes catalyzes
T4778 5105-5109 DT denotes each
T4779 5110-5117 NN denotes hexamer
T4780 5128-5137 NN denotes unwinding
T4781 5138-5140 IN denotes of
T4782 5141-5144 CD denotes one
T4783 5145-5147 IN denotes of
T4784 5148-5151 DT denotes the
T4785 5163-5171 NNS denotes segments
T4786 5152-5155 CD denotes two
T4787 5156-5162 NN denotes duplex
T4788 5171-5172 . denotes .
T4789 5172-5268 sentence denotes We asked whether activation of both hexamers is required for unwinding of the bubble substrate.
T4790 5173-5175 PRP denotes We
T4791 5176-5181 VBD denotes asked
T4792 5182-5189 IN denotes whether
T4793 5221-5229 VBN denotes required
T4794 5190-5200 NN denotes activation
T4795 5201-5203 IN denotes of
T4796 5204-5208 DT denotes both
T4797 5209-5217 NNS denotes hexamers
T4798 5218-5220 VBZ denotes is
T4799 5230-5233 IN denotes for
T4800 5234-5243 NN denotes unwinding
T4801 5244-5246 IN denotes of
T4802 5247-5250 DT denotes the
T4803 5258-5267 NN denotes substrate
T4804 5251-5257 NN denotes bubble
T4805 5267-5268 . denotes .
T4806 5268-5415 sentence denotes The preferred bubble substrate which is efficiently unwound by Mcm4/6/7 contains thymine stretches on both strands of the single-stranded segment.
T4807 5269-5272 DT denotes The
T4808 5290-5299 NN denotes substrate
T4809 5273-5282 JJ denotes preferred
T4810 5283-5289 NN denotes bubble
T4811 5341-5349 VBZ denotes contains
T4812 5300-5305 WDT denotes which
T4813 5321-5328 VBN denotes unwound
T4814 5306-5308 VBZ denotes is
T4815 5309-5320 RB denotes efficiently
T4816 5329-5331 IN denotes by
T4817 5332-5336 NN denotes Mcm4
T4818 5336-5337 HYPH denotes /
T4819 5337-5338 CD denotes 6
T4820 5338-5339 HYPH denotes /
T4821 5339-5340 CD denotes 7
T4822 5350-5357 NN denotes thymine
T4823 5358-5367 NNS denotes stretches
T4824 5368-5370 IN denotes on
T4825 5371-5375 DT denotes both
T4826 5376-5383 NNS denotes strands
T4827 5384-5386 IN denotes of
T4828 5387-5390 DT denotes the
T4829 5407-5414 NN denotes segment
T4830 5391-5397 JJ denotes single
T4831 5398-5406 VBN denotes stranded
T4832 5397-5398 HYPH denotes -
T4833 5414-5415 . denotes .
T4834 5415-5647 sentence denotes We constructed a hetero-bubble (Bub66/T–G-rich) in which one strand is T-rich (same as Bub66/T-rich) and the other strand is G-rich (same as Bub66/G-rich) (13), and helicase assays were conducted with increasing amount of Mcm4/6/7.
T4835 5416-5418 PRP denotes We
T4836 5419-5430 VBD denotes constructed
T4837 5431-5432 DT denotes a
T4838 5433-5446 JJ denotes hetero-bubble
T4839 5447-5448 -LRB- denotes (
T4840 5448-5453 NN denotes Bub66
T4841 5456-5457 NN denotes G
T4842 5453-5454 HYPH denotes /
T4843 5454-5455 NN denotes T
T4844 5455-5456 HYPH denotes
T4845 5457-5458 HYPH denotes -
T4846 5458-5462 JJ denotes rich
T4847 5462-5463 -RRB- denotes )
T4848 5464-5466 IN denotes in
T4849 5484-5486 VBZ denotes is
T4850 5467-5472 WDT denotes which
T4851 5473-5476 CD denotes one
T4852 5477-5483 NN denotes strand
T4853 5487-5488 NN denotes T
T4854 5489-5493 JJ denotes rich
T4855 5488-5489 HYPH denotes -
T4856 5494-5495 -LRB- denotes (
T4857 5495-5499 JJ denotes same
T4858 5500-5502 IN denotes as
T4859 5503-5508 NN denotes Bub66
T4860 5509-5510 NN denotes T
T4861 5508-5509 HYPH denotes /
T4862 5510-5511 HYPH denotes -
T4863 5511-5515 JJ denotes rich
T4864 5515-5516 -RRB- denotes )
T4865 5517-5520 CC denotes and
T4866 5521-5524 DT denotes the
T4867 5531-5537 NN denotes strand
T4868 5525-5530 JJ denotes other
T4869 5538-5540 VBZ denotes is
T4870 5541-5542 NN denotes G
T4871 5543-5547 JJ denotes rich
T4872 5542-5543 HYPH denotes -
T4873 5548-5549 -LRB- denotes (
T4874 5549-5553 JJ denotes same
T4875 5554-5556 IN denotes as
T4876 5557-5562 NN denotes Bub66
T4877 5563-5564 NN denotes G
T4878 5562-5563 HYPH denotes /
T4879 5564-5565 HYPH denotes -
T4880 5565-5569 JJ denotes rich
T4881 5569-5570 -RRB- denotes )
T4882 5571-5572 -LRB- denotes (
T4883 5572-5574 CD denotes 13
T4884 5574-5575 -RRB- denotes )
T4885 5575-5577 , denotes ,
T4886 5577-5580 CC denotes and
T4887 5581-5589 NN denotes helicase
T4888 5590-5596 NNS denotes assays
T4889 5602-5611 VBN denotes conducted
T4890 5597-5601 VBD denotes were
T4891 5612-5616 IN denotes with
T4892 5617-5627 VBG denotes increasing
T4893 5628-5634 NN denotes amount
T4894 5635-5637 IN denotes of
T4895 5638-5642 NN denotes Mcm4
T4896 5642-5643 HYPH denotes /
T4897 5643-5644 CD denotes 6
T4898 5644-5645 HYPH denotes /
T4899 5645-5646 CD denotes 7
T4900 5646-5647 . denotes .
T4901 5647-5736 sentence denotes Only weak unwinding was detected on this substrate compared to Bub66/T-rich (Figure 3A).
T4902 5648-5652 RB denotes Only
T4903 5658-5667 NN denotes unwinding
T4904 5653-5657 JJ denotes weak
T4905 5672-5680 VBN denotes detected
T4906 5668-5671 VBD denotes was
T4907 5681-5683 IN denotes on
T4908 5684-5688 DT denotes this
T4909 5689-5698 NN denotes substrate
T4910 5699-5707 VBN denotes compared
T4911 5708-5710 IN denotes to
T4912 5711-5716 NN denotes Bub66
T4913 5717-5718 NN denotes T
T4914 5716-5717 HYPH denotes /
T4915 5718-5719 HYPH denotes -
T4916 5719-5723 JJ denotes rich
T4917 5724-5725 -LRB- denotes (
T4918 5732-5734 NN denotes 3A
T4919 5725-5731 NN denotes Figure
T4920 5734-5735 -RRB- denotes )
T4921 5735-5736 . denotes .
T4922 5736-5927 sentence denotes Since Mcm4/6/7 can bind to Bub66/T–G-rich and forms a double hexameric complex (data not shown), the defective unwinding is not due to inefficient loading of the helicase onto the substrate.
T4923 5737-5742 IN denotes Since
T4924 5756-5760 VB denotes bind
T4925 5743-5747 NN denotes Mcm4
T4926 5747-5748 HYPH denotes /
T4927 5748-5749 CD denotes 6
T4928 5749-5750 HYPH denotes /
T4929 5750-5751 CD denotes 7
T4930 5752-5755 MD denotes can
T4931 5858-5860 VBZ denotes is
T4932 5761-5763 IN denotes to
T4933 5764-5769 NN denotes Bub66
T4934 5772-5773 NN denotes G
T4935 5769-5770 HYPH denotes /
T4936 5770-5771 NN denotes T
T4937 5771-5772 HYPH denotes
T4938 5773-5774 HYPH denotes -
T4939 5774-5778 JJ denotes rich
T4940 5779-5782 CC denotes and
T4941 5783-5788 VBZ denotes forms
T4942 5789-5790 DT denotes a
T4943 5808-5815 NN denotes complex
T4944 5791-5797 JJ denotes double
T4945 5798-5807 JJ denotes hexameric
T4946 5816-5817 -LRB- denotes (
T4947 5826-5831 VBN denotes shown
T4948 5817-5821 NNS denotes data
T4949 5822-5825 RB denotes not
T4950 5831-5832 -RRB- denotes )
T4951 5832-5834 , denotes ,
T4952 5834-5837 DT denotes the
T4953 5848-5857 NN denotes unwinding
T4954 5838-5847 JJ denotes defective
T4955 5861-5864 RB denotes not
T4956 5865-5868 IN denotes due
T4957 5869-5871 IN denotes to
T4958 5872-5883 JJ denotes inefficient
T4959 5884-5891 NN denotes loading
T4960 5892-5894 IN denotes of
T4961 5895-5898 DT denotes the
T4962 5899-5907 NN denotes helicase
T4963 5908-5912 IN denotes onto
T4964 5913-5916 DT denotes the
T4965 5917-5926 NN denotes substrate
T4966 5926-5927 . denotes .
T4967 5927-6225 sentence denotes If one hexamer interacting with the thymine-rich strand dissociates from the other hexamer and displaces only one of the duplex segments, then it would result in generation of Y-fork structures which could not be further displaced due to the presence of G-rich 3′-tail and would appear on the gel.
T4968 5928-5930 IN denotes If
T4969 5984-5995 VBZ denotes dissociates
T4970 5931-5934 CD denotes one
T4971 5935-5942 NN denotes hexamer
T4972 5943-5954 VBG denotes interacting
T4973 5955-5959 IN denotes with
T4974 5960-5963 DT denotes the
T4975 5977-5983 NN denotes strand
T4976 5964-5971 NN denotes thymine
T4977 5972-5976 JJ denotes rich
T4978 5971-5972 HYPH denotes -
T4979 6080-6086 VB denotes result
T4980 5996-6000 IN denotes from
T4981 6001-6004 DT denotes the
T4982 6011-6018 NN denotes hexamer
T4983 6005-6010 JJ denotes other
T4984 6019-6022 CC denotes and
T4985 6023-6032 VBZ denotes displaces
T4986 6033-6037 RB denotes only
T4987 6038-6041 CD denotes one
T4988 6042-6044 IN denotes of
T4989 6045-6048 DT denotes the
T4990 6056-6064 NNS denotes segments
T4991 6049-6055 NN denotes duplex
T4992 6064-6066 , denotes ,
T4993 6066-6070 RB denotes then
T4994 6071-6073 PRP denotes it
T4995 6074-6079 MD denotes would
T4996 6087-6089 IN denotes in
T4997 6090-6100 NN denotes generation
T4998 6101-6103 IN denotes of
T4999 6104-6105 NN denotes Y
T5000 6106-6110 NN denotes fork
T5001 6105-6106 HYPH denotes -
T5002 6111-6121 NNS denotes structures
T5003 6122-6127 WDT denotes which
T5004 6149-6158 VBN denotes displaced
T5005 6128-6133 MD denotes could
T5006 6134-6137 RB denotes not
T5007 6138-6140 VB denotes be
T5008 6141-6148 RB denotes further
T5009 6159-6162 IN denotes due
T5010 6163-6165 IN denotes to
T5011 6166-6169 DT denotes the
T5012 6170-6178 NN denotes presence
T5013 6179-6181 IN denotes of
T5014 6182-6183 NN denotes G
T5015 6184-6188 JJ denotes rich
T5016 6183-6184 HYPH denotes -
T5017 6192-6196 NN denotes tail
T5018 6189-6190 CD denotes 3
T5019 6190-6191 SYM denotes
T5020 6191-6192 HYPH denotes -
T5021 6197-6200 CC denotes and
T5022 6201-6206 MD denotes would
T5023 6207-6213 VB denotes appear
T5024 6214-6216 IN denotes on
T5025 6217-6220 DT denotes the
T5026 6221-6224 NN denotes gel
T5027 6224-6225 . denotes .
T5028 6225-6451 sentence denotes However, we did not detect such intermediates during the course of the experiment (Figure 3B), suggesting that bubble can be displaced efficiently only when two molecules of the Mcm4/6/7 hexamers are simultaneously activated.
T5029 6226-6233 RB denotes However
T5030 6246-6252 VB denotes detect
T5031 6233-6235 , denotes ,
T5032 6235-6237 PRP denotes we
T5033 6238-6241 VBD denotes did
T5034 6242-6245 RB denotes not
T5035 6253-6257 JJ denotes such
T5036 6258-6271 NNS denotes intermediates
T5037 6272-6278 IN denotes during
T5038 6279-6282 DT denotes the
T5039 6283-6289 NN denotes course
T5040 6290-6292 IN denotes of
T5041 6293-6296 DT denotes the
T5042 6297-6307 NN denotes experiment
T5043 6308-6309 -LRB- denotes (
T5044 6316-6318 NN denotes 3B
T5045 6309-6315 NN denotes Figure
T5046 6318-6319 -RRB- denotes )
T5047 6319-6321 , denotes ,
T5048 6321-6331 VBG denotes suggesting
T5049 6332-6336 IN denotes that
T5050 6351-6360 VBN denotes displaced
T5051 6337-6343 NN denotes bubble
T5052 6344-6347 MD denotes can
T5053 6348-6350 VB denotes be
T5054 6361-6372 RB denotes efficiently
T5055 6373-6377 RB denotes only
T5056 6441-6450 VBN denotes activated
T5057 6378-6382 WRB denotes when
T5058 6383-6386 CD denotes two
T5059 6387-6396 NNS denotes molecules
T5060 6397-6399 IN denotes of
T5061 6400-6403 DT denotes the
T5062 6413-6421 NNS denotes hexamers
T5063 6404-6408 NN denotes Mcm4
T5064 6408-6409 HYPH denotes /
T5065 6409-6410 CD denotes 6
T5066 6410-6411 HYPH denotes /
T5067 6411-6412 CD denotes 7
T5068 6422-6425 VBP denotes are
T5069 6426-6440 RB denotes simultaneously
T5070 6450-6451 . denotes .
T5260 6453-6460 NN denotes Binding
T5261 6474-6481 NNS denotes actions
T5262 6461-6464 CC denotes and
T5263 6465-6473 NN denotes helicase
T5264 6482-6484 IN denotes of
T5265 6485-6489 NN denotes Mcm4
T5266 6489-6490 HYPH denotes /
T5267 6490-6491 CD denotes 6
T5268 6491-6492 HYPH denotes /
T5269 6492-6493 CD denotes 7
T5270 6494-6496 IN denotes on
T5271 6497-6503 VBN denotes forked
T5272 6528-6538 NNS denotes substrates
T5273 6504-6507 CC denotes and
T5274 6508-6509 CD denotes 3
T5275 6518-6527 NN denotes extension
T5276 6509-6510 SYM denotes
T5277 6510-6511 HYPH denotes -
T5278 6512-6514 CC denotes or
T5279 6515-6516 CD denotes 5
T5280 6516-6517 SYM denotes
T5281 6517-6518 HYPH denotes -
T5282 6538-6841 sentence denotes In order to examine more precisely the interaction and helicase actions with forked substrates, Y-fork substrates containing a nascent leading strand (A-fork[3′]), nascent lagging strand (A-fork[5′]), or both of them (A-fork[3′,5′]), as well as 5′-extension or 3′-extension structures were constructed.
T5283 6539-6541 IN denotes In
T5284 6829-6840 VBN denotes constructed
T5285 6542-6547 NN denotes order
T5286 6548-6550 TO denotes to
T5287 6551-6558 VB denotes examine
T5288 6559-6563 RBR denotes more
T5289 6564-6573 RB denotes precisely
T5290 6574-6577 DT denotes the
T5291 6578-6589 NN denotes interaction
T5292 6590-6593 CC denotes and
T5293 6594-6602 NN denotes helicase
T5294 6603-6610 NNS denotes actions
T5295 6611-6615 IN denotes with
T5296 6616-6622 VBN denotes forked
T5297 6623-6633 NNS denotes substrates
T5298 6633-6635 , denotes ,
T5299 6635-6636 NN denotes Y
T5300 6637-6641 NN denotes fork
T5301 6636-6637 HYPH denotes -
T5302 6642-6652 NNS denotes substrates
T5303 6653-6663 VBG denotes containing
T5304 6664-6665 DT denotes a
T5305 6682-6688 NN denotes strand
T5306 6666-6673 JJ denotes nascent
T5307 6674-6681 VBG denotes leading
T5308 6689-6690 -LRB- denotes (
T5309 6690-6691 NN denotes A
T5310 6692-6696 NN denotes fork
T5311 6691-6692 HYPH denotes -
T5312 6696-6697 -LRB- denotes [
T5313 6697-6698 CD denotes 3
T5314 6698-6699 SYM denotes
T5315 6699-6700 -RRB- denotes ]
T5316 6700-6701 -RRB- denotes )
T5317 6701-6703 , denotes ,
T5318 6703-6710 JJ denotes nascent
T5319 6719-6725 NN denotes strand
T5320 6711-6718 VBG denotes lagging
T5321 6726-6727 -LRB- denotes (
T5322 6727-6728 NN denotes A
T5323 6729-6733 NN denotes fork
T5324 6728-6729 HYPH denotes -
T5325 6733-6734 -LRB- denotes [
T5326 6734-6735 CD denotes 5
T5327 6735-6736 SYM denotes
T5328 6736-6737 -RRB- denotes ]
T5329 6737-6738 -RRB- denotes )
T5330 6738-6740 , denotes ,
T5331 6740-6742 CC denotes or
T5332 6743-6747 DT denotes both
T5333 6748-6750 IN denotes of
T5334 6751-6755 PRP denotes them
T5335 6756-6757 -LRB- denotes (
T5336 6757-6758 NN denotes A
T5337 6759-6763 NN denotes fork
T5338 6758-6759 HYPH denotes -
T5339 6813-6823 NNS denotes structures
T5340 6763-6764 -LRB- denotes [
T5341 6764-6765 CD denotes 3
T5342 6765-6766 SYM denotes
T5343 6766-6767 , denotes ,
T5344 6767-6768 CD denotes 5
T5345 6768-6769 SYM denotes
T5346 6769-6770 -RRB- denotes ]
T5347 6770-6771 -RRB- denotes )
T5348 6771-6773 , denotes ,
T5349 6773-6775 RB denotes as
T5350 6781-6783 IN denotes as
T5351 6776-6780 RB denotes well
T5352 6784-6785 CD denotes 5
T5353 6787-6796 NN denotes extension
T5354 6785-6786 SYM denotes
T5355 6786-6787 HYPH denotes -
T5356 6797-6799 CC denotes or
T5357 6800-6801 CD denotes 3
T5358 6803-6812 NN denotes extension
T5359 6801-6802 SYM denotes
T5360 6802-6803 HYPH denotes -
T5361 6824-6828 VBD denotes were
T5362 6840-6841 . denotes .
T5363 6841-6965 sentence denotes Mcm4/6/7 bound to A-fork[3′] or A-fork[5′] with affinity similar to that of a simple Y-fork (Figure 4A and data not shown).
T5364 6842-6846 NN denotes Mcm4
T5365 6851-6856 VBD denotes bound
T5366 6846-6847 HYPH denotes /
T5367 6847-6848 CD denotes 6
T5368 6848-6849 HYPH denotes /
T5369 6849-6850 CD denotes 7
T5370 6857-6859 IN denotes to
T5371 6860-6861 NN denotes A
T5372 6862-6866 NN denotes fork
T5373 6861-6862 HYPH denotes -
T5374 6866-6867 -LRB- denotes [
T5375 6867-6868 CD denotes 3
T5376 6868-6869 SYM denotes
T5377 6869-6870 -RRB- denotes ]
T5378 6871-6873 CC denotes or
T5379 6874-6875 NN denotes A
T5380 6876-6880 NN denotes fork
T5381 6875-6876 HYPH denotes -
T5382 6880-6881 -LRB- denotes [
T5383 6881-6882 CD denotes 5
T5384 6882-6883 SYM denotes
T5385 6883-6884 -RRB- denotes ]
T5386 6885-6889 IN denotes with
T5387 6890-6898 NN denotes affinity
T5388 6899-6906 JJ denotes similar
T5389 6907-6909 IN denotes to
T5390 6910-6914 DT denotes that
T5391 6915-6917 IN denotes of
T5392 6918-6919 DT denotes a
T5393 6929-6933 NN denotes fork
T5394 6920-6926 JJ denotes simple
T5395 6927-6928 NN denotes Y
T5396 6928-6929 HYPH denotes -
T5397 6934-6935 -LRB- denotes (
T5398 6942-6944 NN denotes 4A
T5399 6935-6941 NN denotes Figure
T5400 6945-6948 CC denotes and
T5401 6949-6953 NNS denotes data
T5402 6958-6963 VBN denotes shown
T5403 6954-6957 RB denotes not
T5404 6963-6964 -RRB- denotes )
T5405 6964-6965 . denotes .
T5406 6965-7101 sentence denotes In contrast, PriA helicase, used as a control, bound to A-fork[3′] more efficiently than to A-fork[5′], as reported previously (23,25).
T5407 6966-6968 IN denotes In
T5408 7013-7018 VBD denotes bound
T5409 6969-6977 NN denotes contrast
T5410 6977-6979 , denotes ,
T5411 6979-6983 NN denotes PriA
T5412 6984-6992 NN denotes helicase
T5413 6992-6994 , denotes ,
T5414 6994-6998 VBN denotes used
T5415 6999-7001 IN denotes as
T5416 7002-7003 DT denotes a
T5417 7004-7011 NN denotes control
T5418 7011-7013 , denotes ,
T5419 7019-7021 IN denotes to
T5420 7022-7023 NN denotes A
T5421 7024-7028 NN denotes fork
T5422 7023-7024 HYPH denotes -
T5423 7028-7029 -LRB- denotes [
T5424 7029-7030 CD denotes 3
T5425 7030-7031 SYM denotes
T5426 7031-7032 -RRB- denotes ]
T5427 7033-7037 RBR denotes more
T5428 7038-7049 RB denotes efficiently
T5429 7050-7054 IN denotes than
T5430 7055-7057 IN denotes to
T5431 7058-7059 NN denotes A
T5432 7060-7064 NN denotes fork
T5433 7059-7060 HYPH denotes -
T5434 7064-7065 -LRB- denotes [
T5435 7065-7066 CD denotes 5
T5436 7066-7067 SYM denotes
T5437 7067-7068 -RRB- denotes ]
T5438 7068-7070 , denotes ,
T5439 7070-7072 IN denotes as
T5440 7073-7081 VBN denotes reported
T5441 7082-7092 RB denotes previously
T5442 7093-7094 -LRB- denotes (
T5443 7097-7099 CD denotes 25
T5444 7094-7096 CD denotes 23
T5445 7096-7097 , denotes ,
T5446 7099-7100 -RRB- denotes )
T5447 7100-7101 . denotes .
T5448 7101-7244 sentence denotes Mcm4/6/7 bound also to 5′-extension and 3′-extension, albeit with slightly reduced affinity compared to A-fork[3′] and A-fork[5′] (Figure 4A).
T5449 7102-7106 NN denotes Mcm4
T5450 7111-7116 VBD denotes bound
T5451 7106-7107 HYPH denotes /
T5452 7107-7108 CD denotes 6
T5453 7108-7109 HYPH denotes /
T5454 7109-7110 CD denotes 7
T5455 7117-7121 RB denotes also
T5456 7122-7124 IN denotes to
T5457 7125-7126 CD denotes 5
T5458 7128-7137 NN denotes extension
T5459 7126-7127 SYM denotes
T5460 7127-7128 HYPH denotes -
T5461 7138-7141 CC denotes and
T5462 7142-7143 CD denotes 3
T5463 7145-7154 NN denotes extension
T5464 7143-7144 SYM denotes
T5465 7144-7145 HYPH denotes -
T5466 7154-7156 , denotes ,
T5467 7156-7162 IN denotes albeit
T5468 7163-7167 IN denotes with
T5469 7168-7176 RB denotes slightly
T5470 7177-7184 VBN denotes reduced
T5471 7185-7193 NN denotes affinity
T5472 7194-7202 VBN denotes compared
T5473 7203-7205 IN denotes to
T5474 7206-7207 NN denotes A
T5475 7208-7212 NN denotes fork
T5476 7207-7208 HYPH denotes -
T5477 7212-7213 -LRB- denotes [
T5478 7213-7214 CD denotes 3
T5479 7214-7215 SYM denotes
T5480 7215-7216 -RRB- denotes ]
T5481 7217-7220 CC denotes and
T5482 7221-7222 NN denotes A
T5483 7223-7227 NN denotes fork
T5484 7222-7223 HYPH denotes -
T5485 7227-7228 -LRB- denotes [
T5486 7228-7229 CD denotes 5
T5487 7229-7230 SYM denotes
T5488 7230-7231 -RRB- denotes ]
T5489 7232-7233 -LRB- denotes (
T5490 7240-7242 NN denotes 4A
T5491 7233-7239 NN denotes Figure
T5492 7242-7243 -RRB- denotes )
T5493 7243-7244 . denotes .
T5494 7244-7346 sentence denotes Mcm4/6/7 bound to A-fork[3′,5′] with much lower affinity, and the complex gave rise to a single band.
T5495 7245-7249 NN denotes Mcm4
T5496 7254-7259 VBD denotes bound
T5497 7249-7250 HYPH denotes /
T5498 7250-7251 CD denotes 6
T5499 7251-7252 HYPH denotes /
T5500 7252-7253 CD denotes 7
T5501 7260-7262 IN denotes to
T5502 7263-7264 NN denotes A
T5503 7265-7269 NN denotes fork
T5504 7264-7265 HYPH denotes -
T5505 7269-7270 -LRB- denotes [
T5506 7270-7271 CD denotes 3
T5507 7271-7272 SYM denotes
T5508 7272-7273 , denotes ,
T5509 7273-7274 CD denotes 5
T5510 7274-7275 SYM denotes
T5511 7275-7276 -RRB- denotes ]
T5512 7277-7281 IN denotes with
T5513 7282-7286 RB denotes much
T5514 7287-7292 JJR denotes lower
T5515 7293-7301 NN denotes affinity
T5516 7301-7303 , denotes ,
T5517 7303-7306 CC denotes and
T5518 7307-7310 DT denotes the
T5519 7311-7318 NN denotes complex
T5520 7319-7323 VBD denotes gave
T5521 7324-7328 NN denotes rise
T5522 7329-7331 IN denotes to
T5523 7332-7333 DT denotes a
T5524 7341-7345 NN denotes band
T5525 7334-7340 JJ denotes single
T5526 7345-7346 . denotes .
T5527 7346-7528 sentence denotes These findings indicate that the Mcm4/6/7 complex is loaded onto DNA preferentially and efficiently through single-stranded region, regardless of the presence of 3′- or 5′-terminus.
T5528 7347-7352 DT denotes These
T5529 7353-7361 NNS denotes findings
T5530 7362-7370 VBP denotes indicate
T5531 7371-7375 IN denotes that
T5532 7400-7406 VBN denotes loaded
T5533 7376-7379 DT denotes the
T5534 7389-7396 NN denotes complex
T5535 7380-7384 NN denotes Mcm4
T5536 7384-7385 HYPH denotes /
T5537 7385-7386 CD denotes 6
T5538 7386-7387 HYPH denotes /
T5539 7387-7388 CD denotes 7
T5540 7397-7399 VBZ denotes is
T5541 7407-7411 IN denotes onto
T5542 7412-7415 NN denotes DNA
T5543 7416-7430 RB denotes preferentially
T5544 7431-7434 CC denotes and
T5545 7435-7446 RB denotes efficiently
T5546 7447-7454 IN denotes through
T5547 7455-7461 JJ denotes single
T5548 7462-7470 VBN denotes stranded
T5549 7461-7462 HYPH denotes -
T5550 7471-7477 NN denotes region
T5551 7477-7479 , denotes ,
T5552 7479-7489 RB denotes regardless
T5553 7490-7492 IN denotes of
T5554 7493-7496 DT denotes the
T5555 7497-7505 NN denotes presence
T5556 7506-7508 IN denotes of
T5557 7509-7510 CD denotes 3
T5558 7519-7527 NN denotes terminus
T5559 7510-7511 SYM denotes
T5560 7511-7512 HYPH denotes -
T5561 7513-7515 CC denotes or
T5562 7516-7517 CD denotes 5
T5563 7517-7518 SYM denotes
T5564 7518-7519 HYPH denotes -
T5565 7527-7528 . denotes .
T5566 7528-7712 sentence denotes In contrast, only the substrate containing a 3′ single-stranded DNA tail (A-fork[5′]) was efficiently unwound and A-fork[3′] or A-fork[3′,5′], was not unwound by Mcm4/6/7 (Figure 4B).
T5567 7529-7531 IN denotes In
T5568 7631-7638 VBN denotes unwound
T5569 7532-7540 NN denotes contrast
T5570 7540-7542 , denotes ,
T5571 7542-7546 RB denotes only
T5572 7551-7560 NN denotes substrate
T5573 7547-7550 DT denotes the
T5574 7561-7571 VBG denotes containing
T5575 7572-7573 DT denotes a
T5576 7597-7601 NN denotes tail
T5577 7574-7575 CD denotes 3
T5578 7575-7576 SYM denotes
T5579 7577-7583 JJ denotes single
T5580 7584-7592 VBN denotes stranded
T5581 7583-7584 HYPH denotes -
T5582 7593-7596 NN denotes DNA
T5583 7602-7603 -LRB- denotes (
T5584 7605-7609 NN denotes fork
T5585 7603-7604 NN denotes A
T5586 7604-7605 HYPH denotes -
T5587 7609-7610 -LRB- denotes [
T5588 7610-7611 CD denotes 5
T5589 7611-7612 SYM denotes
T5590 7612-7613 -RRB- denotes ]
T5591 7613-7614 -RRB- denotes )
T5592 7615-7618 VBD denotes was
T5593 7619-7630 RB denotes efficiently
T5594 7639-7642 CC denotes and
T5595 7643-7644 NN denotes A
T5596 7645-7649 NN denotes fork
T5597 7644-7645 HYPH denotes -
T5598 7680-7687 VBN denotes unwound
T5599 7649-7650 -LRB- denotes [
T5600 7650-7651 CD denotes 3
T5601 7651-7652 SYM denotes
T5602 7652-7653 -RRB- denotes ]
T5603 7654-7656 CC denotes or
T5604 7657-7658 NN denotes A
T5605 7659-7663 NN denotes fork
T5606 7658-7659 HYPH denotes -
T5607 7663-7664 -LRB- denotes [
T5608 7664-7665 CD denotes 3
T5609 7665-7666 SYM denotes
T5610 7666-7667 , denotes ,
T5611 7667-7668 CD denotes 5
T5612 7668-7669 SYM denotes
T5613 7669-7670 -RRB- denotes ]
T5614 7670-7672 , denotes ,
T5615 7672-7675 VBD denotes was
T5616 7676-7679 RB denotes not
T5617 7688-7690 IN denotes by
T5618 7691-7695 NN denotes Mcm4
T5619 7695-7696 HYPH denotes /
T5620 7696-7697 CD denotes 6
T5621 7697-7698 HYPH denotes /
T5622 7698-7699 CD denotes 7
T5623 7700-7701 -LRB- denotes (
T5624 7708-7710 NN denotes 4B
T5625 7701-7707 NN denotes Figure
T5626 7710-7711 -RRB- denotes )
T5627 7711-7712 . denotes .
T5628 7712-7889 sentence denotes Absence of helicase actions on A-fork[3′,5′] composed only of duplex regions is expected since double-stranded DNA is not able to activate the ATPase activity of Mcm4/6/7 (10).
T5629 7713-7720 NN denotes Absence
T5630 7793-7801 VBN denotes expected
T5631 7721-7723 IN denotes of
T5632 7724-7732 NN denotes helicase
T5633 7733-7740 NNS denotes actions
T5634 7741-7743 IN denotes on
T5635 7744-7745 NN denotes A
T5636 7746-7750 NN denotes fork
T5637 7745-7746 HYPH denotes -
T5638 7750-7751 -LRB- denotes [
T5639 7751-7752 CD denotes 3
T5640 7752-7753 SYM denotes
T5641 7753-7754 , denotes ,
T5642 7754-7755 CD denotes 5
T5643 7755-7756 SYM denotes
T5644 7756-7757 -RRB- denotes ]
T5645 7758-7766 VBN denotes composed
T5646 7767-7771 RB denotes only
T5647 7772-7774 IN denotes of
T5648 7775-7781 NN denotes duplex
T5649 7782-7789 NNS denotes regions
T5650 7790-7792 VBZ denotes is
T5651 7802-7807 IN denotes since
T5652 7828-7830 VBZ denotes is
T5653 7808-7814 JJ denotes double
T5654 7815-7823 VBN denotes stranded
T5655 7814-7815 HYPH denotes -
T5656 7824-7827 NN denotes DNA
T5657 7831-7834 RB denotes not
T5658 7835-7839 JJ denotes able
T5659 7840-7842 TO denotes to
T5660 7843-7851 VB denotes activate
T5661 7852-7855 DT denotes the
T5662 7863-7871 NN denotes activity
T5663 7856-7862 NN denotes ATPase
T5664 7872-7874 IN denotes of
T5665 7875-7879 NN denotes Mcm4
T5666 7879-7880 HYPH denotes /
T5667 7880-7881 CD denotes 6
T5668 7881-7882 HYPH denotes /
T5669 7882-7883 CD denotes 7
T5670 7884-7885 -LRB- denotes (
T5671 7885-7887 CD denotes 10
T5672 7887-7888 -RRB- denotes )
T5673 7888-7889 . denotes .
T5674 7889-8140 sentence denotes In contrast, the PriA, a structure-specific helicase used as a control, binds at the fork junction and unwinds the fork and the nascent lagging strand DNA on A-fork[5′], or unwinds the nascent lagging strand on A-fork[3′,5′], as reported before (25).
T5675 7890-7892 IN denotes In
T5676 7962-7967 VBZ denotes binds
T5677 7893-7901 NN denotes contrast
T5678 7901-7903 , denotes ,
T5679 7903-7906 DT denotes the
T5680 7907-7911 NN denotes PriA
T5681 7911-7913 , denotes ,
T5682 7913-7914 DT denotes a
T5683 7934-7942 NN denotes helicase
T5684 7915-7924 NN denotes structure
T5685 7925-7933 JJ denotes specific
T5686 7924-7925 HYPH denotes -
T5687 7943-7947 VBN denotes used
T5688 7948-7950 IN denotes as
T5689 7951-7952 DT denotes a
T5690 7953-7960 NN denotes control
T5691 7960-7962 , denotes ,
T5692 7968-7970 IN denotes at
T5693 7971-7974 DT denotes the
T5694 7980-7988 NN denotes junction
T5695 7975-7979 NN denotes fork
T5696 7989-7992 CC denotes and
T5697 7993-8000 VBZ denotes unwinds
T5698 8001-8004 DT denotes the
T5699 8005-8009 NN denotes fork
T5700 8010-8013 CC denotes and
T5701 8014-8017 DT denotes the
T5702 8041-8044 NN denotes DNA
T5703 8018-8025 JJ denotes nascent
T5704 8026-8033 VBG denotes lagging
T5705 8034-8040 NN denotes strand
T5706 8045-8047 IN denotes on
T5707 8048-8049 NN denotes A
T5708 8050-8054 NN denotes fork
T5709 8049-8050 HYPH denotes -
T5710 8054-8055 -LRB- denotes [
T5711 8055-8056 CD denotes 5
T5712 8056-8057 SYM denotes
T5713 8057-8058 -RRB- denotes ]
T5714 8058-8060 , denotes ,
T5715 8060-8062 CC denotes or
T5716 8063-8070 VBZ denotes unwinds
T5717 8071-8074 DT denotes the
T5718 8091-8097 NN denotes strand
T5719 8075-8082 JJ denotes nascent
T5720 8083-8090 VBG denotes lagging
T5721 8098-8100 IN denotes on
T5722 8101-8102 NN denotes A
T5723 8103-8107 NN denotes fork
T5724 8102-8103 HYPH denotes -
T5725 8107-8108 -LRB- denotes [
T5726 8108-8109 CD denotes 3
T5727 8109-8110 SYM denotes
T5728 8110-8111 , denotes ,
T5729 8111-8112 CD denotes 5
T5730 8112-8113 SYM denotes
T5731 8113-8114 -RRB- denotes ]
T5732 8114-8116 , denotes ,
T5733 8116-8118 IN denotes as
T5734 8119-8127 VBN denotes reported
T5735 8128-8134 RB denotes before
T5736 8135-8136 -LRB- denotes (
T5737 8136-8138 CD denotes 25
T5738 8138-8139 -RRB- denotes )
T5739 8139-8140 . denotes .
T5740 8140-8304 sentence denotes These results indicate that the Mcm4/6/7 complex binds to single-stranded DNA and that its helicase is activated only in the presence of a single-stranded 3′-tail.
T5741 8141-8146 DT denotes These
T5742 8147-8154 NNS denotes results
T5743 8155-8163 VBP denotes indicate
T5744 8164-8168 IN denotes that
T5745 8190-8195 VBZ denotes binds
T5746 8169-8172 DT denotes the
T5747 8182-8189 NN denotes complex
T5748 8173-8177 NN denotes Mcm4
T5749 8177-8178 HYPH denotes /
T5750 8178-8179 CD denotes 6
T5751 8179-8180 HYPH denotes /
T5752 8180-8181 CD denotes 7
T5753 8196-8198 IN denotes to
T5754 8199-8205 JJ denotes single
T5755 8206-8214 VBN denotes stranded
T5756 8205-8206 HYPH denotes -
T5757 8215-8218 NN denotes DNA
T5758 8219-8222 CC denotes and
T5759 8223-8227 IN denotes that
T5760 8244-8253 VBN denotes activated
T5761 8228-8231 PRP$ denotes its
T5762 8232-8240 NN denotes helicase
T5763 8241-8243 VBZ denotes is
T5764 8254-8258 RB denotes only
T5765 8259-8261 IN denotes in
T5766 8262-8265 DT denotes the
T5767 8266-8274 NN denotes presence
T5768 8275-8277 IN denotes of
T5769 8278-8279 DT denotes a
T5770 8299-8303 NN denotes tail
T5771 8280-8286 JJ denotes single
T5772 8287-8295 VBN denotes stranded
T5773 8286-8287 HYPH denotes -
T5774 8296-8297 CD denotes 3
T5775 8297-8298 SYM denotes
T5776 8298-8299 HYPH denotes -
T5777 8303-8304 . denotes .
T5933 8306-8307 CD denotes 3
T5934 8309-8318 NN denotes extension
T5935 8307-8308 SYM denotes
T5936 8308-8309 HYPH denotes -
T5937 8341-8350 VBN denotes displaced
T5938 8319-8323 IN denotes with
T5939 8324-8328 NN denotes poly
T5940 8329-8331 NN denotes dT
T5941 8328-8329 -LRB- denotes (
T5942 8333-8337 NN denotes tail
T5943 8331-8332 -RRB- denotes )
T5944 8338-8340 VBZ denotes is
T5945 8351-8353 IN denotes by
T5946 8354-8358 NN denotes Mcm4
T5947 8358-8359 HYPH denotes /
T5948 8359-8360 CD denotes 6
T5949 8360-8361 HYPH denotes /
T5950 8361-8362 CD denotes 7
T5951 8362-8515 sentence denotes It has been reported that the 3′-extension can be unwound by the archaeal Mcm homohexamer but not by fission and budding yeast Mcm complexes (14,26,27).
T5952 8363-8365 PRP denotes It
T5953 8375-8383 VBN denotes reported
T5954 8366-8369 VBZ denotes has
T5955 8370-8374 VBN denotes been
T5956 8384-8388 IN denotes that
T5957 8413-8420 JJ denotes unwound
T5958 8389-8392 DT denotes the
T5959 8396-8405 NN denotes extension
T5960 8393-8394 CD denotes 3
T5961 8394-8395 SYM denotes
T5962 8395-8396 HYPH denotes -
T5963 8406-8409 MD denotes can
T5964 8410-8412 VB denotes be
T5965 8421-8423 IN denotes by
T5966 8424-8427 DT denotes the
T5967 8441-8452 NN denotes homohexamer
T5968 8428-8436 JJ denotes archaeal
T5969 8437-8440 NN denotes Mcm
T5970 8453-8456 CC denotes but
T5971 8457-8460 RB denotes not
T5972 8461-8463 IN denotes by
T5973 8464-8471 NN denotes fission
T5974 8494-8503 NNS denotes complexes
T5975 8472-8475 CC denotes and
T5976 8476-8483 NN denotes budding
T5977 8484-8489 NN denotes yeast
T5978 8490-8493 NN denotes Mcm
T5979 8504-8505 -LRB- denotes (
T5980 8511-8513 CD denotes 27
T5981 8505-8507 CD denotes 14
T5982 8507-8508 , denotes ,
T5983 8508-8510 CD denotes 26
T5984 8510-8511 , denotes ,
T5985 8513-8514 -RRB- denotes )
T5986 8514-8515 . denotes .
T5987 8515-8695 sentence denotes We have constructed 3′-extension substrates containing poly(dT), poly(dA), poly(dC) and poly(dG) 3′-tails in order to examine whether mouse Mcm4/6/7 can displace these substrates.
T5988 8516-8518 PRP denotes We
T5989 8524-8535 VBN denotes constructed
T5990 8519-8523 VBP denotes have
T5991 8536-8537 CD denotes 3
T5992 8539-8548 NN denotes extension
T5993 8537-8538 SYM denotes
T5994 8538-8539 HYPH denotes -
T5995 8549-8559 NNS denotes substrates
T5996 8560-8570 VBG denotes containing
T5997 8571-8575 NN denotes poly
T5998 8576-8578 NN denotes dT
T5999 8575-8576 -LRB- denotes (
T6000 8616-8621 NNS denotes tails
T6001 8578-8579 -RRB- denotes )
T6002 8579-8581 , denotes ,
T6003 8581-8585 NN denotes poly
T6004 8586-8588 NN denotes dA
T6005 8585-8586 -LRB- denotes (
T6006 8588-8589 -RRB- denotes )
T6007 8589-8591 , denotes ,
T6008 8591-8595 NN denotes poly
T6009 8596-8598 NN denotes dC
T6010 8595-8596 -LRB- denotes (
T6011 8598-8599 -RRB- denotes )
T6012 8600-8603 CC denotes and
T6013 8604-8608 NN denotes poly
T6014 8609-8611 NN denotes dG
T6015 8608-8609 -LRB- denotes (
T6016 8611-8612 -RRB- denotes )
T6017 8613-8614 CD denotes 3
T6018 8614-8615 SYM denotes
T6019 8615-8616 HYPH denotes -
T6020 8622-8624 IN denotes in
T6021 8625-8630 NN denotes order
T6022 8631-8633 TO denotes to
T6023 8634-8641 VB denotes examine
T6024 8642-8649 IN denotes whether
T6025 8669-8677 VB denotes displace
T6026 8650-8655 NN denotes mouse
T6027 8656-8660 NN denotes Mcm4
T6028 8660-8661 HYPH denotes /
T6029 8661-8662 CD denotes 6
T6030 8662-8663 HYPH denotes /
T6031 8663-8664 CD denotes 7
T6032 8665-8668 MD denotes can
T6033 8678-8683 DT denotes these
T6034 8684-8694 NNS denotes substrates
T6035 8694-8695 . denotes .
T6036 8695-8846 sentence denotes We first found that Mcm4/6/7 binds to dT-, dC- and dG-3′-extension with similar affinity, and to dA-3′-extension with much lower affinity (Figure 5A).
T6037 8696-8698 PRP denotes We
T6038 8705-8710 VBD denotes found
T6039 8699-8704 RB denotes first
T6040 8711-8715 IN denotes that
T6041 8725-8730 VBZ denotes binds
T6042 8716-8720 NN denotes Mcm4
T6043 8720-8721 HYPH denotes /
T6044 8721-8722 CD denotes 6
T6045 8722-8723 HYPH denotes /
T6046 8723-8724 CD denotes 7
T6047 8731-8733 IN denotes to
T6048 8734-8736 NN denotes dT
T6049 8753-8762 NN denotes extension
T6050 8736-8737 HYPH denotes -
T6051 8737-8739 , denotes ,
T6052 8739-8741 NN denotes dC
T6053 8741-8742 HYPH denotes -
T6054 8743-8746 CC denotes and
T6055 8747-8749 NN denotes dG
T6056 8749-8750 HYPH denotes -
T6057 8750-8751 CD denotes 3
T6058 8751-8752 SYM denotes
T6059 8752-8753 HYPH denotes -
T6060 8763-8767 IN denotes with
T6061 8768-8775 JJ denotes similar
T6062 8776-8784 NN denotes affinity
T6063 8784-8786 , denotes ,
T6064 8786-8789 CC denotes and
T6065 8790-8792 IN denotes to
T6066 8793-8795 NN denotes dA
T6067 8799-8808 NN denotes extension
T6068 8795-8796 HYPH denotes -
T6069 8796-8797 CD denotes 3
T6070 8797-8798 SYM denotes
T6071 8798-8799 HYPH denotes -
T6072 8809-8813 IN denotes with
T6073 8814-8818 RB denotes much
T6074 8819-8824 JJR denotes lower
T6075 8825-8833 NN denotes affinity
T6076 8834-8835 -LRB- denotes (
T6077 8842-8844 NN denotes 5A
T6078 8835-8841 NN denotes Figure
T6079 8844-8845 -RRB- denotes )
T6080 8845-8846 . denotes .
T6081 8846-8977 sentence denotes This is consistent with the previous results that Mcm4/6/7 binds to 50mer oligo-dT, -dC and -dG, but not to a 50mer oligo-dA (13).
T6082 8847-8851 DT denotes This
T6083 8852-8854 VBZ denotes is
T6084 8855-8865 JJ denotes consistent
T6085 8866-8870 IN denotes with
T6086 8871-8874 DT denotes the
T6087 8884-8891 NNS denotes results
T6088 8875-8883 JJ denotes previous
T6089 8892-8896 IN denotes that
T6090 8906-8911 VBZ denotes binds
T6091 8897-8901 NN denotes Mcm4
T6092 8901-8902 HYPH denotes /
T6093 8902-8903 CD denotes 6
T6094 8903-8904 HYPH denotes /
T6095 8904-8905 CD denotes 7
T6096 8912-8914 IN denotes to
T6097 8915-8920 NN denotes 50mer
T6098 8927-8929 NN denotes dT
T6099 8921-8926 NN denotes oligo
T6100 8926-8927 HYPH denotes -
T6101 8929-8931 , denotes ,
T6102 8931-8932 HYPH denotes -
T6103 8932-8934 NN denotes dC
T6104 8935-8938 CC denotes and
T6105 8939-8940 HYPH denotes -
T6106 8940-8942 NN denotes dG
T6107 8942-8944 , denotes ,
T6108 8944-8947 CC denotes but
T6109 8948-8951 RB denotes not
T6110 8952-8954 IN denotes to
T6111 8955-8956 DT denotes a
T6112 8969-8971 NN denotes dA
T6113 8957-8962 NN denotes 50mer
T6114 8963-8968 NN denotes oligo
T6115 8968-8969 HYPH denotes -
T6116 8972-8973 -LRB- denotes (
T6117 8973-8975 CD denotes 13
T6118 8975-8976 -RRB- denotes )
T6119 8976-8977 . denotes .
T6120 8977-9145 sentence denotes We found that dT-tailed 3′-extension was displaced efficiently by Mcm 4/6/7 while almost no or very little activity was detected on other substrates (Figure 5B and C).
T6121 8978-8980 PRP denotes We
T6122 8981-8986 VBD denotes found
T6123 8987-8991 IN denotes that
T6124 9019-9028 VBN denotes displaced
T6125 8992-8994 NN denotes dT
T6126 8995-9001 VBN denotes tailed
T6127 8994-8995 HYPH denotes -
T6128 9005-9014 NN denotes extension
T6129 9002-9003 CD denotes 3
T6130 9003-9004 SYM denotes
T6131 9004-9005 HYPH denotes -
T6132 9015-9018 VBD denotes was
T6133 9029-9040 RB denotes efficiently
T6134 9041-9043 IN denotes by
T6135 9044-9047 NN denotes Mcm
T6136 9048-9049 CD denotes 4
T6137 9049-9050 HYPH denotes /
T6138 9050-9051 CD denotes 6
T6139 9051-9052 HYPH denotes /
T6140 9052-9053 CD denotes 7
T6141 9054-9059 IN denotes while
T6142 9098-9106 VBN denotes detected
T6143 9060-9066 RB denotes almost
T6144 9067-9069 DT denotes no
T6145 9070-9072 CC denotes or
T6146 9073-9077 RB denotes very
T6147 9078-9084 JJ denotes little
T6148 9085-9093 NN denotes activity
T6149 9094-9097 VBD denotes was
T6150 9107-9109 IN denotes on
T6151 9110-9115 JJ denotes other
T6152 9116-9126 NNS denotes substrates
T6153 9127-9128 -LRB- denotes (
T6154 9135-9137 NN denotes 5B
T6155 9128-9134 NN denotes Figure
T6156 9138-9141 CC denotes and
T6157 9142-9143 NN denotes C
T6158 9143-9144 -RRB- denotes )
T6159 9144-9145 . denotes .
T6160 9145-9259 sentence denotes This is in sharp contrast to yeast Mcm4/6/7 helicases which are not capable of unwinding 3′-extension substrates.
T6161 9146-9150 DT denotes This
T6162 9151-9153 VBZ denotes is
T6163 9154-9156 IN denotes in
T6164 9157-9162 JJ denotes sharp
T6165 9163-9171 NN denotes contrast
T6166 9172-9174 IN denotes to
T6167 9175-9180 NN denotes yeast
T6168 9190-9199 NNS denotes helicases
T6169 9181-9185 NN denotes Mcm4
T6170 9185-9186 HYPH denotes /
T6171 9186-9187 CD denotes 6
T6172 9187-9188 HYPH denotes /
T6173 9188-9189 CD denotes 7
T6174 9200-9205 WDT denotes which
T6175 9206-9209 VBP denotes are
T6176 9210-9213 RB denotes not
T6177 9214-9221 JJ denotes capable
T6178 9222-9224 IN denotes of
T6179 9225-9234 VBG denotes unwinding
T6180 9235-9236 CD denotes 3
T6181 9238-9247 NN denotes extension
T6182 9236-9237 SYM denotes
T6183 9237-9238 HYPH denotes -
T6184 9248-9258 NNS denotes substrates
T6185 9258-9259 . denotes .
T6186 9259-9365 sentence denotes Furthermore, dT-tailed 5′-extension, to which Mcm4/6/7 could bind, was not displaced by the Mcm helicase.
T6187 9260-9271 RB denotes Furthermore
T6188 9335-9344 VBN denotes displaced
T6189 9271-9273 , denotes ,
T6190 9273-9275 NN denotes dT
T6191 9276-9282 VBN denotes tailed
T6192 9275-9276 HYPH denotes -
T6193 9286-9295 NN denotes extension
T6194 9283-9284 CD denotes 5
T6195 9284-9285 SYM denotes
T6196 9285-9286 HYPH denotes -
T6197 9295-9297 , denotes ,
T6198 9297-9299 IN denotes to
T6199 9321-9325 VB denotes bind
T6200 9300-9305 WDT denotes which
T6201 9306-9310 NN denotes Mcm4
T6202 9310-9311 HYPH denotes /
T6203 9311-9312 CD denotes 6
T6204 9312-9313 HYPH denotes /
T6205 9313-9314 CD denotes 7
T6206 9315-9320 MD denotes could
T6207 9325-9327 , denotes ,
T6208 9327-9330 VBD denotes was
T6209 9331-9334 RB denotes not
T6210 9345-9347 IN denotes by
T6211 9348-9351 DT denotes the
T6212 9356-9364 NN denotes helicase
T6213 9352-9355 NN denotes Mcm
T6214 9364-9365 . denotes .
T6215 9365-9556 sentence denotes The addition of the 5′-tail to dT-tailed 3′-extension further stimulated the displacement (Figure 5D), confirming the previous report that the fork structures facilitate the helicase action.
T6216 9366-9369 DT denotes The
T6217 9370-9378 NN denotes addition
T6218 9428-9438 VBD denotes stimulated
T6219 9379-9381 IN denotes of
T6220 9382-9385 DT denotes the
T6221 9389-9393 NN denotes tail
T6222 9386-9387 CD denotes 5
T6223 9387-9388 SYM denotes
T6224 9388-9389 HYPH denotes -
T6225 9394-9396 IN denotes to
T6226 9397-9399 NN denotes dT
T6227 9400-9406 VBN denotes tailed
T6228 9399-9400 HYPH denotes -
T6229 9410-9419 NN denotes extension
T6230 9407-9408 CD denotes 3
T6231 9408-9409 SYM denotes
T6232 9409-9410 HYPH denotes -
T6233 9420-9427 RB denotes further
T6234 9439-9442 DT denotes the
T6235 9443-9455 NN denotes displacement
T6236 9456-9457 -LRB- denotes (
T6237 9464-9466 NN denotes 5D
T6238 9457-9463 NN denotes Figure
T6239 9466-9467 -RRB- denotes )
T6240 9467-9469 , denotes ,
T6241 9469-9479 VBG denotes confirming
T6242 9480-9483 DT denotes the
T6243 9493-9499 NN denotes report
T6244 9484-9492 JJ denotes previous
T6245 9500-9504 IN denotes that
T6246 9525-9535 VBP denotes facilitate
T6247 9505-9508 DT denotes the
T6248 9514-9524 NNS denotes structures
T6249 9509-9513 NN denotes fork
T6250 9536-9539 DT denotes the
T6251 9549-9555 NN denotes action
T6252 9540-9548 NN denotes helicase
T6253 9555-9556 . denotes .
T6254 9556-9720 sentence denotes Thus, these results further strengthen our conclusion that the mammalian Mcm helicase is generally activated by the thymine-stretch on the 3′-single-stranded tail.
T6255 9557-9561 RB denotes Thus
T6256 9585-9595 VB denotes strengthen
T6257 9561-9563 , denotes ,
T6258 9563-9568 DT denotes these
T6259 9569-9576 NNS denotes results
T6260 9577-9584 RB denotes further
T6261 9596-9599 PRP$ denotes our
T6262 9600-9610 NN denotes conclusion
T6263 9611-9615 IN denotes that
T6264 9656-9665 VBN denotes activated
T6265 9616-9619 DT denotes the
T6266 9634-9642 NN denotes helicase
T6267 9620-9629 JJ denotes mammalian
T6268 9630-9633 NN denotes Mcm
T6269 9643-9645 VBZ denotes is
T6270 9646-9655 RB denotes generally
T6271 9666-9668 IN denotes by
T6272 9669-9672 DT denotes the
T6273 9681-9688 NN denotes stretch
T6274 9673-9680 NN denotes thymine
T6275 9680-9681 HYPH denotes -
T6276 9689-9691 IN denotes on
T6277 9692-9695 DT denotes the
T6278 9715-9719 NN denotes tail
T6279 9696-9697 CD denotes 3
T6280 9697-9698 SYM denotes
T6281 9698-9699 HYPH denotes -
T6282 9699-9705 JJ denotes single
T6283 9706-9714 VBN denotes stranded
T6284 9705-9706 HYPH denotes -
T6285 9719-9720 . denotes .
T6404 9722-9725 DT denotes The
T6405 9726-9733 NNS denotes effects
T6406 9734-9736 IN denotes of
T6407 9737-9740 DT denotes the
T6408 9749-9756 NN denotes content
T6409 9741-9748 NN denotes thymine
T6410 9757-9759 IN denotes of
T6411 9760-9763 DT denotes the
T6412 9767-9771 NN denotes tail
T6413 9764-9765 CD denotes 3
T6414 9765-9766 SYM denotes
T6415 9766-9767 HYPH denotes -
T6416 9772-9774 IN denotes on
T6417 9775-9778 NN denotes Mcm
T6418 9779-9787 NN denotes helicase
T6419 9788-9796 NN denotes activity
T6420 9796-9933 sentence denotes We next examined more systematically the effect of the compositions of the thymine residues of the 3′-tail on the Mcm helicase activity.
T6421 9797-9799 PRP denotes We
T6422 9805-9813 VBD denotes examined
T6423 9800-9804 RB denotes next
T6424 9814-9818 RBR denotes more
T6425 9819-9833 RB denotes systematically
T6426 9834-9837 DT denotes the
T6427 9838-9844 NN denotes effect
T6428 9845-9847 IN denotes of
T6429 9848-9851 DT denotes the
T6430 9852-9864 NNS denotes compositions
T6431 9865-9867 IN denotes of
T6432 9868-9871 DT denotes the
T6433 9880-9888 NNS denotes residues
T6434 9872-9879 NN denotes thymine
T6435 9889-9891 IN denotes of
T6436 9892-9895 DT denotes the
T6437 9899-9903 NN denotes tail
T6438 9896-9897 CD denotes 3
T6439 9897-9898 SYM denotes
T6440 9898-9899 HYPH denotes -
T6441 9904-9906 IN denotes on
T6442 9907-9910 DT denotes the
T6443 9924-9932 NN denotes activity
T6444 9911-9914 NN denotes Mcm
T6445 9915-9923 NN denotes helicase
T6446 9932-9933 . denotes .
T6447 9933-10180 sentence denotes A partial heteroduplex M13 single-stranded DNA containing a 37 bp duplex region in the presence or absence of the 50 nt long 3′-tail of various nucleotide compositions were constructed and the unwinding by mouse Mcm4/6/7 was examined (Figure 6A).
T6448 9934-9935 DT denotes A
T6449 9977-9980 NN denotes DNA
T6450 9936-9943 JJ denotes partial
T6451 9944-9956 NN denotes heteroduplex
T6452 9957-9960 NN denotes M13
T6453 9961-9967 JJ denotes single
T6454 9968-9976 VBN denotes stranded
T6455 9967-9968 HYPH denotes -
T6456 10107-10118 VBN denotes constructed
T6457 9981-9991 VBG denotes containing
T6458 9992-9993 DT denotes a
T6459 10007-10013 NN denotes region
T6460 9994-9996 CD denotes 37
T6461 9997-9999 NN denotes bp
T6462 10000-10006 NN denotes duplex
T6463 10014-10016 IN denotes in
T6464 10017-10020 DT denotes the
T6465 10021-10029 NN denotes presence
T6466 10030-10032 CC denotes or
T6467 10033-10040 NN denotes absence
T6468 10041-10043 IN denotes of
T6469 10044-10047 DT denotes the
T6470 10062-10066 NN denotes tail
T6471 10048-10050 CD denotes 50
T6472 10051-10053 NN denotes nt
T6473 10054-10058 JJ denotes long
T6474 10059-10060 CD denotes 3
T6475 10060-10061 SYM denotes
T6476 10061-10062 HYPH denotes -
T6477 10067-10069 IN denotes of
T6478 10070-10077 JJ denotes various
T6479 10089-10101 NNS denotes compositions
T6480 10078-10088 NN denotes nucleotide
T6481 10102-10106 VBD denotes were
T6482 10119-10122 CC denotes and
T6483 10123-10126 DT denotes the
T6484 10127-10136 NN denotes unwinding
T6485 10159-10167 VBN denotes examined
T6486 10137-10139 IN denotes by
T6487 10140-10145 NN denotes mouse
T6488 10146-10150 NN denotes Mcm4
T6489 10150-10151 HYPH denotes /
T6490 10151-10152 CD denotes 6
T6491 10152-10153 HYPH denotes /
T6492 10153-10154 CD denotes 7
T6493 10155-10158 VBD denotes was
T6494 10168-10169 -LRB- denotes (
T6495 10176-10178 NN denotes 6A
T6496 10169-10175 NN denotes Figure
T6497 10178-10179 -RRB- denotes )
T6498 10179-10180 . denotes .
T6499 10180-10308 sentence denotes Due to its low processivity, Mcm4/6/7 barely displaced the annealed 37mer oligonucleotide without a 3′-tail (37mer; Figure 6A).
T6500 10181-10184 IN denotes Due
T6501 10226-10235 VBD denotes displaced
T6502 10185-10187 IN denotes to
T6503 10188-10191 PRP$ denotes its
T6504 10196-10208 NN denotes processivity
T6505 10192-10195 JJ denotes low
T6506 10208-10210 , denotes ,
T6507 10210-10214 NN denotes Mcm4
T6508 10214-10215 HYPH denotes /
T6509 10215-10216 CD denotes 6
T6510 10216-10217 HYPH denotes /
T6511 10217-10218 CD denotes 7
T6512 10219-10225 RB denotes barely
T6513 10236-10239 DT denotes the
T6514 10255-10270 NN denotes oligonucleotide
T6515 10240-10248 JJ denotes annealed
T6516 10249-10254 NN denotes 37mer
T6517 10271-10278 IN denotes without
T6518 10279-10280 DT denotes a
T6519 10284-10288 NN denotes tail
T6520 10281-10282 CD denotes 3
T6521 10282-10283 SYM denotes
T6522 10283-10284 HYPH denotes -
T6523 10289-10290 -LRB- denotes (
T6524 10304-10306 NN denotes 6A
T6525 10290-10295 NN denotes 37mer
T6526 10295-10296 : denotes ;
T6527 10297-10303 NN denotes Figure
T6528 10306-10307 -RRB- denotes )
T6529 10307-10308 . denotes .
T6530 10308-10501 sentence denotes Only weak helicase activity was observed on the substrate carrying the 3′-tail of 25 repeats of TA dinucleotide (37-TA25; Figure 6A), whereas strong helicase activity was observed on 37-TTA17.
T6531 10309-10313 RB denotes Only
T6532 10328-10336 NN denotes activity
T6533 10314-10318 JJ denotes weak
T6534 10319-10327 NN denotes helicase
T6535 10341-10349 VBN denotes observed
T6536 10337-10340 VBD denotes was
T6537 10350-10352 IN denotes on
T6538 10353-10356 DT denotes the
T6539 10357-10366 NN denotes substrate
T6540 10367-10375 VBG denotes carrying
T6541 10376-10379 DT denotes the
T6542 10383-10387 NN denotes tail
T6543 10380-10381 CD denotes 3
T6544 10381-10382 SYM denotes
T6545 10382-10383 HYPH denotes -
T6546 10388-10390 IN denotes of
T6547 10391-10393 CD denotes 25
T6548 10394-10401 NNS denotes repeats
T6549 10402-10404 IN denotes of
T6550 10405-10407 NN denotes TA
T6551 10408-10420 NN denotes dinucleotide
T6552 10421-10422 -LRB- denotes (
T6553 10438-10440 NN denotes 6A
T6554 10422-10424 CD denotes 37
T6555 10425-10429 NN denotes TA25
T6556 10424-10425 HYPH denotes -
T6557 10429-10430 : denotes ;
T6558 10431-10437 NN denotes Figure
T6559 10440-10441 -RRB- denotes )
T6560 10441-10443 , denotes ,
T6561 10443-10450 IN denotes whereas
T6562 10480-10488 VBN denotes observed
T6563 10451-10457 JJ denotes strong
T6564 10467-10475 NN denotes activity
T6565 10458-10466 NN denotes helicase
T6566 10476-10479 VBD denotes was
T6567 10489-10491 IN denotes on
T6568 10492-10494 CD denotes 37
T6569 10495-10500 NN denotes TTA17
T6570 10494-10495 HYPH denotes -
T6571 10500-10501 . denotes .
T6572 10501-10751 sentence denotes Increase of thymine content on the 3′-tail did not further increase the extent of unwinding (37-TTTA13, 37-TTTTA10 and 37-T50; Figure 6A), suggesting that 17 repeats of TT dinucleotides (67% thymine) may be sufficient for activation of Mcm helicase.
T6573 10502-10510 NN denotes Increase
T6574 10561-10569 VB denotes increase
T6575 10511-10513 IN denotes of
T6576 10514-10521 NN denotes thymine
T6577 10522-10529 NN denotes content
T6578 10530-10532 IN denotes on
T6579 10533-10536 DT denotes the
T6580 10540-10544 NN denotes tail
T6581 10537-10538 CD denotes 3
T6582 10538-10539 SYM denotes
T6583 10539-10540 HYPH denotes -
T6584 10545-10548 VBD denotes did
T6585 10549-10552 RB denotes not
T6586 10553-10560 RB denotes further
T6587 10570-10573 DT denotes the
T6588 10574-10580 NN denotes extent
T6589 10581-10583 IN denotes of
T6590 10584-10593 NN denotes unwinding
T6591 10594-10595 -LRB- denotes (
T6592 10636-10638 NN denotes 6A
T6593 10595-10597 CD denotes 37
T6594 10598-10604 NN denotes TTTA13
T6595 10597-10598 HYPH denotes -
T6596 10604-10606 , denotes ,
T6597 10606-10608 CD denotes 37
T6598 10609-10616 NN denotes TTTTA10
T6599 10608-10609 HYPH denotes -
T6600 10617-10620 CC denotes and
T6601 10621-10623 CD denotes 37
T6602 10624-10627 NN denotes T50
T6603 10623-10624 HYPH denotes -
T6604 10627-10628 : denotes ;
T6605 10629-10635 NN denotes Figure
T6606 10638-10639 -RRB- denotes )
T6607 10639-10641 , denotes ,
T6608 10641-10651 VBG denotes suggesting
T6609 10652-10656 IN denotes that
T6610 10706-10708 VB denotes be
T6611 10657-10659 CD denotes 17
T6612 10660-10667 NNS denotes repeats
T6613 10668-10670 IN denotes of
T6614 10671-10673 NN denotes TT
T6615 10674-10687 NNS denotes dinucleotides
T6616 10688-10689 -LRB- denotes (
T6617 10693-10700 NN denotes thymine
T6618 10689-10691 CD denotes 67
T6619 10691-10692 NN denotes %
T6620 10700-10701 -RRB- denotes )
T6621 10702-10705 MD denotes may
T6622 10709-10719 JJ denotes sufficient
T6623 10720-10723 IN denotes for
T6624 10724-10734 NN denotes activation
T6625 10735-10737 IN denotes of
T6626 10738-10741 NN denotes Mcm
T6627 10742-10750 NN denotes helicase
T6628 10750-10751 . denotes .
T6629 10751-10952 sentence denotes It should be noted that the TA25 tail would self-anneal and this would prevent the loading of Mcm, since the 3′-tail containing TTAA13 or TTTAAA8 did not enhance the unwinding either (data not shown).
T6630 10752-10754 PRP denotes It
T6631 10765-10770 VBN denotes noted
T6632 10755-10761 MD denotes should
T6633 10762-10764 VB denotes be
T6634 10771-10775 IN denotes that
T6635 10801-10807 VB denotes anneal
T6636 10776-10779 DT denotes the
T6637 10785-10789 NN denotes tail
T6638 10780-10784 NN denotes TA25
T6639 10790-10795 MD denotes would
T6640 10796-10800 NN denotes self
T6641 10800-10801 HYPH denotes -
T6642 10808-10811 CC denotes and
T6643 10812-10816 DT denotes this
T6644 10823-10830 VB denotes prevent
T6645 10817-10822 MD denotes would
T6646 10831-10834 DT denotes the
T6647 10835-10842 NN denotes loading
T6648 10843-10845 IN denotes of
T6649 10846-10849 NN denotes Mcm
T6650 10849-10851 , denotes ,
T6651 10851-10856 IN denotes since
T6652 10906-10913 VB denotes enhance
T6653 10857-10860 DT denotes the
T6654 10864-10868 NN denotes tail
T6655 10861-10862 CD denotes 3
T6656 10862-10863 SYM denotes
T6657 10863-10864 HYPH denotes -
T6658 10869-10879 VBG denotes containing
T6659 10880-10886 NN denotes TTAA13
T6660 10887-10889 CC denotes or
T6661 10890-10897 NN denotes TTTAAA8
T6662 10898-10901 VBD denotes did
T6663 10902-10905 RB denotes not
T6664 10914-10917 DT denotes the
T6665 10918-10927 NN denotes unwinding
T6666 10928-10934 RB denotes either
T6667 10935-10936 -LRB- denotes (
T6668 10945-10950 VBN denotes shown
T6669 10936-10940 NNS denotes data
T6670 10941-10944 RB denotes not
T6671 10950-10951 -RRB- denotes )
T6672 10951-10952 . denotes .
T6673 10952-11052 sentence denotes Therefore, we next examined the effects of repeating sequences of thymine and cytosine (Figure 6B).
T6674 10953-10962 RB denotes Therefore
T6675 10972-10980 VBD denotes examined
T6676 10962-10964 , denotes ,
T6677 10964-10966 PRP denotes we
T6678 10967-10971 RB denotes next
T6679 10981-10984 DT denotes the
T6680 10985-10992 NNS denotes effects
T6681 10993-10995 IN denotes of
T6682 10996-11005 VBG denotes repeating
T6683 11006-11015 NNS denotes sequences
T6684 11016-11018 IN denotes of
T6685 11019-11026 NN denotes thymine
T6686 11027-11030 CC denotes and
T6687 11031-11039 NN denotes cytosine
T6688 11040-11041 -LRB- denotes (
T6689 11048-11050 NN denotes 6B
T6690 11041-11047 NN denotes Figure
T6691 11050-11051 -RRB- denotes )
T6692 11051-11052 . denotes .
T6693 11052-11326 sentence denotes Partial heteroduplex substrates containing the 3′-tail of TC25, TTCC13, TTTCCC8, TTTTCCCC6, TTCC17 were displaced by the Mcm4/6/7 complex to the extent similar to that achieved by TTA17, suggesting that 50% thymine content is sufficient for full activation of Mcm helicase.
T6694 11053-11060 JJ denotes Partial
T6695 11074-11084 NNS denotes substrates
T6696 11061-11073 NN denotes heteroduplex
T6697 11157-11166 VBN denotes displaced
T6698 11085-11095 VBG denotes containing
T6699 11096-11099 DT denotes the
T6700 11103-11107 NN denotes tail
T6701 11100-11101 CD denotes 3
T6702 11101-11102 SYM denotes
T6703 11102-11103 HYPH denotes -
T6704 11108-11110 IN denotes of
T6705 11111-11115 NN denotes TC25
T6706 11145-11151 NN denotes TTCC17
T6707 11115-11117 , denotes ,
T6708 11117-11123 NN denotes TTCC13
T6709 11123-11125 , denotes ,
T6710 11125-11132 NN denotes TTTCCC8
T6711 11132-11134 , denotes ,
T6712 11134-11143 NN denotes TTTTCCCC6
T6713 11143-11145 , denotes ,
T6714 11152-11156 VBD denotes were
T6715 11167-11169 IN denotes by
T6716 11170-11173 DT denotes the
T6717 11183-11190 NN denotes complex
T6718 11174-11178 NN denotes Mcm4
T6719 11178-11179 HYPH denotes /
T6720 11179-11180 CD denotes 6
T6721 11180-11181 HYPH denotes /
T6722 11181-11182 CD denotes 7
T6723 11191-11193 IN denotes to
T6724 11194-11197 DT denotes the
T6725 11198-11204 NN denotes extent
T6726 11205-11212 JJ denotes similar
T6727 11213-11215 IN denotes to
T6728 11216-11220 DT denotes that
T6729 11221-11229 VBN denotes achieved
T6730 11230-11232 IN denotes by
T6731 11233-11238 NN denotes TTA17
T6732 11238-11240 , denotes ,
T6733 11240-11250 VBG denotes suggesting
T6734 11251-11255 IN denotes that
T6735 11276-11278 VBZ denotes is
T6736 11256-11258 CD denotes 50
T6737 11258-11259 NN denotes %
T6738 11268-11275 NN denotes content
T6739 11260-11267 NN denotes thymine
T6740 11279-11289 JJ denotes sufficient
T6741 11290-11293 IN denotes for
T6742 11294-11298 JJ denotes full
T6743 11299-11309 NN denotes activation
T6744 11310-11312 IN denotes of
T6745 11313-11316 NN denotes Mcm
T6746 11317-11325 NN denotes helicase
T6747 11325-11326 . denotes .
T6748 11326-11468 sentence denotes TTCC13 and TTCC17 were displaced to a similar extent, consistent with the earlier result that a 40 nt tail is sufficient for activation (13).
T6749 11327-11333 NN denotes TTCC13
T6750 11350-11359 VBN denotes displaced
T6751 11334-11337 CC denotes and
T6752 11338-11344 NN denotes TTCC17
T6753 11345-11349 VBD denotes were
T6754 11360-11362 IN denotes to
T6755 11363-11364 DT denotes a
T6756 11373-11379 NN denotes extent
T6757 11365-11372 JJ denotes similar
T6758 11379-11381 , denotes ,
T6759 11381-11391 JJ denotes consistent
T6760 11392-11396 IN denotes with
T6761 11397-11400 DT denotes the
T6762 11409-11415 NN denotes result
T6763 11401-11408 JJR denotes earlier
T6764 11416-11420 IN denotes that
T6765 11434-11436 VBZ denotes is
T6766 11421-11422 DT denotes a
T6767 11429-11433 NN denotes tail
T6768 11423-11425 CD denotes 40
T6769 11426-11428 NN denotes nt
T6770 11437-11447 JJ denotes sufficient
T6771 11448-11451 IN denotes for
T6772 11452-11462 NN denotes activation
T6773 11463-11464 -LRB- denotes (
T6774 11464-11466 CD denotes 13
T6775 11466-11467 -RRB- denotes )
T6776 11467-11468 . denotes .
T6777 11468-11630 sentence denotes However, the efficiency of the displacement significantly decreased as the thymine content of the 3′-tail dropped to 33%, as in TAA17 or TCC17 (Figure 6B and C).
T6778 11469-11476 RB denotes However
T6779 11527-11536 VBD denotes decreased
T6780 11476-11478 , denotes ,
T6781 11478-11481 DT denotes the
T6782 11482-11492 NN denotes efficiency
T6783 11493-11495 IN denotes of
T6784 11496-11499 DT denotes the
T6785 11500-11512 NN denotes displacement
T6786 11513-11526 RB denotes significantly
T6787 11537-11539 IN denotes as
T6788 11575-11582 VBD denotes dropped
T6789 11540-11543 DT denotes the
T6790 11552-11559 NN denotes content
T6791 11544-11551 NN denotes thymine
T6792 11560-11562 IN denotes of
T6793 11563-11566 DT denotes the
T6794 11570-11574 NN denotes tail
T6795 11567-11568 CD denotes 3
T6796 11568-11569 SYM denotes
T6797 11569-11570 HYPH denotes -
T6798 11583-11585 IN denotes to
T6799 11586-11588 CD denotes 33
T6800 11588-11589 NN denotes %
T6801 11589-11591 , denotes ,
T6802 11591-11593 IN denotes as
T6803 11594-11596 IN denotes in
T6804 11597-11602 NN denotes TAA17
T6805 11603-11605 CC denotes or
T6806 11606-11611 NN denotes TCC17
T6807 11612-11613 -LRB- denotes (
T6808 11620-11622 NN denotes 6B
T6809 11613-11619 NN denotes Figure
T6810 11623-11626 CC denotes and
T6811 11627-11628 NN denotes C
T6812 11628-11629 -RRB- denotes )
T6813 11629-11630 . denotes .
T6814 11630-11745 sentence denotes Thus, the minimal thymine content required for activation of the Mcm helicase may be somewhere between 33 and 50%.
T6815 11631-11635 RB denotes Thus
T6816 11713-11715 VB denotes be
T6817 11635-11637 , denotes ,
T6818 11637-11640 DT denotes the
T6819 11657-11664 NN denotes content
T6820 11641-11648 JJ denotes minimal
T6821 11649-11656 NN denotes thymine
T6822 11665-11673 VBN denotes required
T6823 11674-11677 IN denotes for
T6824 11678-11688 NN denotes activation
T6825 11689-11691 IN denotes of
T6826 11692-11695 DT denotes the
T6827 11700-11708 NN denotes helicase
T6828 11696-11699 NN denotes Mcm
T6829 11709-11712 MD denotes may
T6830 11716-11725 RB denotes somewhere
T6831 11726-11733 IN denotes between
T6832 11734-11736 CD denotes 33
T6833 11743-11744 NN denotes %
T6834 11737-11740 CC denotes and
T6835 11741-11743 CD denotes 50
T6836 11744-11745 . denotes .
T7008 11747-11750 NN denotes DUE
T7009 11751-11760 NNS denotes sequences
T7010 11783-11791 VBP denotes activate
T7011 11761-11765 IN denotes from
T7012 11766-11769 DT denotes the
T7013 11776-11782 NN denotes origin
T7014 11770-11771 NN denotes c
T7015 11772-11775 NN denotes myc
T7016 11771-11772 HYPH denotes -
T7017 11792-11795 NN denotes Mcm
T7018 11796-11804 NN denotes helicase
T7019 11804-12104 sentence denotes Our previous studies have shown that the sequences containing periodic (dT)n tracts derived from the human lamin B2 origin (48% thymine content) can serve as an efficient activator for the Mcm helicase on a bubble, and replacement of thymines with guanines abolished the helicase activation (13,28).
T7020 11805-11808 PRP$ denotes Our
T7021 11818-11825 NNS denotes studies
T7022 11809-11817 JJ denotes previous
T7023 11831-11836 VBN denotes shown
T7024 11826-11830 VBP denotes have
T7025 11837-11841 IN denotes that
T7026 11954-11959 VB denotes serve
T7027 11842-11845 DT denotes the
T7028 11846-11855 NNS denotes sequences
T7029 11856-11866 VBG denotes containing
T7030 11867-11875 JJ denotes periodic
T7031 11882-11888 NNS denotes tracts
T7032 11876-11877 -LRB- denotes (
T7033 11880-11881 NN denotes n
T7034 11877-11879 NN denotes dT
T7035 11879-11880 -RRB- denotes )
T7036 11889-11896 VBN denotes derived
T7037 11897-11901 IN denotes from
T7038 11902-11905 DT denotes the
T7039 11921-11927 NN denotes origin
T7040 11906-11911 JJ denotes human
T7041 11912-11917 NN denotes lamin
T7042 11918-11920 NN denotes B2
T7043 11928-11929 -LRB- denotes (
T7044 11941-11948 NN denotes content
T7045 11929-11931 CD denotes 48
T7046 11931-11932 NN denotes %
T7047 11933-11940 NN denotes thymine
T7048 11948-11949 -RRB- denotes )
T7049 11950-11953 MD denotes can
T7050 11960-11962 IN denotes as
T7051 11963-11965 DT denotes an
T7052 11976-11985 NN denotes activator
T7053 11966-11975 JJ denotes efficient
T7054 11986-11989 IN denotes for
T7055 11990-11993 DT denotes the
T7056 11998-12006 NN denotes helicase
T7057 11994-11997 NN denotes Mcm
T7058 12007-12009 IN denotes on
T7059 12010-12011 DT denotes a
T7060 12012-12018 NN denotes bubble
T7061 12018-12020 , denotes ,
T7062 12020-12023 CC denotes and
T7063 12024-12035 NN denotes replacement
T7064 12062-12071 VBD denotes abolished
T7065 12036-12038 IN denotes of
T7066 12039-12047 NNS denotes thymines
T7067 12048-12052 IN denotes with
T7068 12053-12061 NNS denotes guanines
T7069 12072-12075 DT denotes the
T7070 12085-12095 NN denotes activation
T7071 12076-12084 NN denotes helicase
T7072 12096-12097 -LRB- denotes (
T7073 12100-12102 CD denotes 28
T7074 12097-12099 CD denotes 13
T7075 12099-12100 , denotes ,
T7076 12102-12103 -RRB- denotes )
T7077 12103-12104 . denotes .
T7078 12104-12462 sentence denotes In order to examine other natural replication origins with different thymine contents for the ability to activate Mcm helicase on a bubble substrate, we constructed new bubble substrates, Bub82/c-myc, containing sequences derived from the DUE (DNA unwinding element) region of the human c-myc origin which is essential for c-myc replicator activity (29,30).
T7079 12105-12107 IN denotes In
T7080 12258-12269 VBD denotes constructed
T7081 12108-12113 NN denotes order
T7082 12114-12116 TO denotes to
T7083 12117-12124 VB denotes examine
T7084 12125-12130 JJ denotes other
T7085 12151-12158 NNS denotes origins
T7086 12131-12138 JJ denotes natural
T7087 12139-12150 NN denotes replication
T7088 12159-12163 IN denotes with
T7089 12164-12173 JJ denotes different
T7090 12182-12190 NNS denotes contents
T7091 12174-12181 NN denotes thymine
T7092 12191-12194 IN denotes for
T7093 12195-12198 DT denotes the
T7094 12199-12206 NN denotes ability
T7095 12207-12209 TO denotes to
T7096 12210-12218 VB denotes activate
T7097 12219-12222 NN denotes Mcm
T7098 12223-12231 NN denotes helicase
T7099 12232-12234 IN denotes on
T7100 12235-12236 DT denotes a
T7101 12244-12253 NN denotes substrate
T7102 12237-12243 NN denotes bubble
T7103 12253-12255 , denotes ,
T7104 12255-12257 PRP denotes we
T7105 12270-12273 JJ denotes new
T7106 12281-12291 NNS denotes substrates
T7107 12274-12280 NN denotes bubble
T7108 12291-12293 , denotes ,
T7109 12293-12298 NN denotes Bub82
T7110 12301-12304 NN denotes myc
T7111 12298-12299 HYPH denotes /
T7112 12299-12300 NN denotes c
T7113 12300-12301 HYPH denotes -
T7114 12304-12306 , denotes ,
T7115 12306-12316 VBG denotes containing
T7116 12317-12326 NNS denotes sequences
T7117 12327-12334 VBN denotes derived
T7118 12335-12339 IN denotes from
T7119 12340-12343 DT denotes the
T7120 12372-12378 NN denotes region
T7121 12344-12347 NN denotes DUE
T7122 12348-12349 -LRB- denotes (
T7123 12349-12352 NN denotes DNA
T7124 12363-12370 NN denotes element
T7125 12353-12362 NN denotes unwinding
T7126 12370-12371 -RRB- denotes )
T7127 12379-12381 IN denotes of
T7128 12382-12385 DT denotes the
T7129 12398-12404 NN denotes origin
T7130 12386-12391 JJ denotes human
T7131 12392-12393 NN denotes c
T7132 12394-12397 NN denotes myc
T7133 12393-12394 HYPH denotes -
T7134 12405-12410 WDT denotes which
T7135 12411-12413 VBZ denotes is
T7136 12414-12423 JJ denotes essential
T7137 12424-12427 IN denotes for
T7138 12428-12429 NN denotes c
T7139 12430-12433 NN denotes myc
T7140 12429-12430 HYPH denotes -
T7141 12445-12453 NN denotes activity
T7142 12434-12444 NN denotes replicator
T7143 12454-12455 -LRB- denotes (
T7144 12458-12460 CD denotes 30
T7145 12455-12457 CD denotes 29
T7146 12457-12458 , denotes ,
T7147 12460-12461 -RRB- denotes )
T7148 12461-12462 . denotes .
T7149 12462-12584 sentence denotes The unpaired segment in Bub82/c-myc/DUE contains one strand of DUE and that in Bub82/c-myc/DUE-C contains another strand.
T7150 12463-12466 DT denotes The
T7151 12476-12483 NN denotes segment
T7152 12467-12475 JJ denotes unpaired
T7153 12503-12511 VBZ denotes contains
T7154 12484-12486 IN denotes in
T7155 12487-12492 NN denotes Bub82
T7156 12499-12502 NN denotes DUE
T7157 12492-12493 HYPH denotes /
T7158 12493-12494 NN denotes c
T7159 12495-12498 NN denotes myc
T7160 12494-12495 HYPH denotes -
T7161 12498-12499 HYPH denotes /
T7162 12512-12515 CD denotes one
T7163 12516-12522 NN denotes strand
T7164 12523-12525 IN denotes of
T7165 12526-12529 NN denotes DUE
T7166 12530-12533 CC denotes and
T7167 12534-12538 DT denotes that
T7168 12560-12568 VBZ denotes contains
T7169 12539-12541 IN denotes in
T7170 12542-12547 NN denotes Bub82
T7171 12558-12559 NN denotes C
T7172 12547-12548 HYPH denotes /
T7173 12548-12549 NN denotes c
T7174 12550-12553 NN denotes myc
T7175 12549-12550 HYPH denotes -
T7176 12553-12554 HYPH denotes /
T7177 12554-12557 NN denotes DUE
T7178 12557-12558 HYPH denotes -
T7179 12569-12576 DT denotes another
T7180 12577-12583 NN denotes strand
T7181 12583-12584 . denotes .
T7182 12584-12746 sentence denotes This DUE is believed to coincide with the initially unwound region of the c-myc origin (29), and its deletion substantially reduced the replicator activity (30).
T7183 12585-12589 DT denotes This
T7184 12590-12593 NN denotes DUE
T7185 12597-12605 VBN denotes believed
T7186 12594-12596 VBZ denotes is
T7187 12606-12608 TO denotes to
T7188 12609-12617 VB denotes coincide
T7189 12618-12622 IN denotes with
T7190 12623-12626 DT denotes the
T7191 12645-12651 NN denotes region
T7192 12627-12636 RB denotes initially
T7193 12637-12644 JJ denotes unwound
T7194 12652-12654 IN denotes of
T7195 12655-12658 DT denotes the
T7196 12665-12671 NN denotes origin
T7197 12659-12660 NN denotes c
T7198 12661-12664 NN denotes myc
T7199 12660-12661 HYPH denotes -
T7200 12672-12673 -LRB- denotes (
T7201 12673-12675 CD denotes 29
T7202 12675-12676 -RRB- denotes )
T7203 12676-12678 , denotes ,
T7204 12678-12681 CC denotes and
T7205 12682-12685 PRP$ denotes its
T7206 12686-12694 NN denotes deletion
T7207 12709-12716 VBD denotes reduced
T7208 12695-12708 RB denotes substantially
T7209 12717-12720 DT denotes the
T7210 12732-12740 NN denotes activity
T7211 12721-12731 NN denotes replicator
T7212 12741-12742 -LRB- denotes (
T7213 12742-12744 CD denotes 30
T7214 12744-12745 -RRB- denotes )
T7215 12745-12746 . denotes .
T7216 12746-12992 sentence denotes Mcm4/6/7 unwound Bub82/lamin B2 (thymine 48%), Bub82/c-myc/DUE (37%) and Bub82/c-myc/DUE-C (39%) with similar efficiency (Figure 7A), indicating that the sequences from the c-myc origin also can serve as efficient activators of the Mcm helicase.
T7217 12747-12751 NN denotes Mcm4
T7218 12756-12763 VBN denotes unwound
T7219 12751-12752 HYPH denotes /
T7220 12752-12753 CD denotes 6
T7221 12753-12754 HYPH denotes /
T7222 12754-12755 CD denotes 7
T7223 12764-12769 NN denotes Bub82
T7224 12776-12778 NN denotes B2
T7225 12769-12770 HYPH denotes /
T7226 12770-12775 NN denotes lamin
T7227 12779-12780 -LRB- denotes (
T7228 12790-12791 NN denotes %
T7229 12780-12787 NN denotes thymine
T7230 12788-12790 CD denotes 48
T7231 12791-12792 -RRB- denotes )
T7232 12792-12794 , denotes ,
T7233 12794-12799 NN denotes Bub82
T7234 12806-12809 NN denotes DUE
T7235 12799-12800 HYPH denotes /
T7236 12800-12801 NN denotes c
T7237 12802-12805 NN denotes myc
T7238 12801-12802 HYPH denotes -
T7239 12805-12806 HYPH denotes /
T7240 12810-12811 -LRB- denotes (
T7241 12813-12814 NN denotes %
T7242 12811-12813 CD denotes 37
T7243 12814-12815 -RRB- denotes )
T7244 12816-12819 CC denotes and
T7245 12820-12825 NN denotes Bub82
T7246 12836-12837 NN denotes C
T7247 12825-12826 HYPH denotes /
T7248 12826-12827 NN denotes c
T7249 12828-12831 NN denotes myc
T7250 12827-12828 HYPH denotes -
T7251 12831-12832 HYPH denotes /
T7252 12832-12835 NN denotes DUE
T7253 12835-12836 HYPH denotes -
T7254 12838-12839 -LRB- denotes (
T7255 12841-12842 NN denotes %
T7256 12839-12841 CD denotes 39
T7257 12842-12843 -RRB- denotes )
T7258 12844-12848 IN denotes with
T7259 12849-12856 JJ denotes similar
T7260 12857-12867 NN denotes efficiency
T7261 12868-12869 -LRB- denotes (
T7262 12876-12878 NN denotes 7A
T7263 12869-12875 NN denotes Figure
T7264 12878-12879 -RRB- denotes )
T7265 12879-12881 , denotes ,
T7266 12881-12891 VBG denotes indicating
T7267 12892-12896 IN denotes that
T7268 12942-12947 VB denotes serve
T7269 12897-12900 DT denotes the
T7270 12901-12910 NNS denotes sequences
T7271 12911-12915 IN denotes from
T7272 12916-12919 DT denotes the
T7273 12926-12932 NN denotes origin
T7274 12920-12921 NN denotes c
T7275 12922-12925 NN denotes myc
T7276 12921-12922 HYPH denotes -
T7277 12933-12937 RB denotes also
T7278 12938-12941 MD denotes can
T7279 12948-12950 IN denotes as
T7280 12951-12960 JJ denotes efficient
T7281 12961-12971 NNS denotes activators
T7282 12972-12974 IN denotes of
T7283 12975-12978 DT denotes the
T7284 12983-12991 NN denotes helicase
T7285 12979-12982 NN denotes Mcm
T7286 12991-12992 . denotes .
T7287 12992-13258 sentence denotes This result also indicates that sequences with 37% thymine content can activate Mcm4/6/7 to displace 24 nt duplex on both sides in a bubble substrate, suggesting that the not only thymine content but also the sequence context may affect the Mcm helicase activation.
T7288 12993-12997 DT denotes This
T7289 12998-13004 NN denotes result
T7290 13010-13019 VBZ denotes indicates
T7291 13005-13009 RB denotes also
T7292 13020-13024 IN denotes that
T7293 13064-13072 VB denotes activate
T7294 13025-13034 NNS denotes sequences
T7295 13035-13039 IN denotes with
T7296 13040-13042 CD denotes 37
T7297 13042-13043 NN denotes %
T7298 13052-13059 NN denotes content
T7299 13044-13051 NN denotes thymine
T7300 13060-13063 MD denotes can
T7301 13073-13077 NN denotes Mcm4
T7302 13077-13078 HYPH denotes /
T7303 13078-13079 CD denotes 6
T7304 13079-13080 HYPH denotes /
T7305 13080-13081 CD denotes 7
T7306 13082-13084 TO denotes to
T7307 13085-13093 VB denotes displace
T7308 13094-13096 CD denotes 24
T7309 13097-13099 NN denotes nt
T7310 13100-13106 NN denotes duplex
T7311 13107-13109 IN denotes on
T7312 13110-13114 DT denotes both
T7313 13115-13120 NNS denotes sides
T7314 13121-13123 IN denotes in
T7315 13124-13125 DT denotes a
T7316 13133-13142 NN denotes substrate
T7317 13126-13132 NN denotes bubble
T7318 13142-13144 , denotes ,
T7319 13144-13154 VBG denotes suggesting
T7320 13155-13159 IN denotes that
T7321 13223-13229 VB denotes affect
T7322 13160-13163 DT denotes the
T7323 13181-13188 NN denotes content
T7324 13164-13167 RB denotes not
T7325 13168-13172 RB denotes only
T7326 13173-13180 NN denotes thymine
T7327 13189-13192 CC denotes but
T7328 13193-13197 RB denotes also
T7329 13198-13201 DT denotes the
T7330 13211-13218 NN denotes context
T7331 13202-13210 NN denotes sequence
T7332 13219-13222 MD denotes may
T7333 13230-13233 DT denotes the
T7334 13247-13257 NN denotes activation
T7335 13234-13237 NN denotes Mcm
T7336 13238-13246 NN denotes helicase
T7337 13257-13258 . denotes .
T7338 13258-13446 sentence denotes In gel shift assays, MCM4/6/7 bound to all the three bubbles, although the affinity to Bub82/c-myc/DUE and to Bub82/c-myc/DUE-C is slightly lower than that to Bub-82/lamin B2 (Figure 7B).
T7339 13259-13261 IN denotes In
T7340 13289-13294 VBD denotes bound
T7341 13262-13265 NN denotes gel
T7342 13266-13271 NN denotes shift
T7343 13272-13278 NNS denotes assays
T7344 13278-13280 , denotes ,
T7345 13280-13284 NN denotes MCM4
T7346 13284-13285 HYPH denotes /
T7347 13285-13286 CD denotes 6
T7348 13286-13287 HYPH denotes /
T7349 13287-13288 CD denotes 7
T7350 13295-13297 IN denotes to
T7351 13298-13301 PDT denotes all
T7352 13312-13319 NNS denotes bubbles
T7353 13302-13305 DT denotes the
T7354 13306-13311 CD denotes three
T7355 13319-13321 , denotes ,
T7356 13321-13329 IN denotes although
T7357 13387-13389 VBZ denotes is
T7358 13330-13333 DT denotes the
T7359 13334-13342 NN denotes affinity
T7360 13343-13345 IN denotes to
T7361 13346-13351 NN denotes Bub82
T7362 13358-13361 NN denotes DUE
T7363 13351-13352 HYPH denotes /
T7364 13352-13353 NN denotes c
T7365 13354-13357 NN denotes myc
T7366 13353-13354 HYPH denotes -
T7367 13357-13358 HYPH denotes /
T7368 13362-13365 CC denotes and
T7369 13366-13368 IN denotes to
T7370 13369-13374 NN denotes Bub82
T7371 13385-13386 NN denotes C
T7372 13374-13375 HYPH denotes /
T7373 13375-13376 NN denotes c
T7374 13377-13380 NN denotes myc
T7375 13376-13377 HYPH denotes -
T7376 13380-13381 HYPH denotes /
T7377 13381-13384 NN denotes DUE
T7378 13384-13385 HYPH denotes -
T7379 13390-13398 RB denotes slightly
T7380 13399-13404 JJR denotes lower
T7381 13405-13409 IN denotes than
T7382 13410-13414 DT denotes that
T7383 13415-13417 IN denotes to
T7384 13418-13421 NN denotes Bub
T7385 13431-13433 NN denotes B2
T7386 13421-13422 HYPH denotes -
T7387 13422-13424 CD denotes 82
T7388 13424-13425 HYPH denotes /
T7389 13425-13430 NN denotes lamin
T7390 13434-13435 -LRB- denotes (
T7391 13442-13444 NN denotes 7B
T7392 13435-13441 NN denotes Figure
T7393 13444-13445 -RRB- denotes )
T7394 13445-13446 . denotes .
T7395 13446-13539 sentence denotes Therefore, helicase and DNA binding activities do not necessarily correlate with each other.
T7396 13447-13456 RB denotes Therefore
T7397 13513-13522 VB denotes correlate
T7398 13456-13458 , denotes ,
T7399 13458-13466 NN denotes helicase
T7400 13483-13493 NNS denotes activities
T7401 13467-13470 CC denotes and
T7402 13471-13474 NN denotes DNA
T7403 13475-13482 NN denotes binding
T7404 13494-13496 VBP denotes do
T7405 13497-13500 RB denotes not
T7406 13501-13512 RB denotes necessarily
T7407 13523-13527 IN denotes with
T7408 13528-13532 DT denotes each
T7409 13533-13538 JJ denotes other
T7410 13538-13539 . denotes .
T7411 13539-13678 sentence denotes This was also indicated by our previous results that guanine and cytosine stretches can bind to Mcm but cannot activate the helicase (13).
T7412 13540-13544 DT denotes This
T7413 13554-13563 VBN denotes indicated
T7414 13545-13548 VBD denotes was
T7415 13549-13553 RB denotes also
T7416 13564-13566 IN denotes by
T7417 13567-13570 PRP$ denotes our
T7418 13580-13587 NNS denotes results
T7419 13571-13579 JJ denotes previous
T7420 13588-13592 IN denotes that
T7421 13628-13632 VB denotes bind
T7422 13593-13600 NN denotes guanine
T7423 13614-13623 NNS denotes stretches
T7424 13601-13604 CC denotes and
T7425 13605-13613 NN denotes cytosine
T7426 13624-13627 MD denotes can
T7427 13633-13635 IN denotes to
T7428 13636-13639 NN denotes Mcm
T7429 13640-13643 CC denotes but
T7430 13644-13647 MD denotes can
T7431 13651-13659 VB denotes activate
T7432 13647-13650 RB denotes not
T7433 13660-13663 DT denotes the
T7434 13664-13672 NN denotes helicase
T7435 13673-13674 -LRB- denotes (
T7436 13674-13676 CD denotes 13
T7437 13676-13677 -RRB- denotes )
T7438 13677-13678 . denotes .
T7722 13680-13683 NN denotes DNA
T7723 13684-13693 NN denotes unwinding
T7724 13709-13718 VBN denotes inhibited
T7725 13694-13696 IN denotes by
T7726 13697-13701 NN denotes Mcm4
T7727 13701-13702 HYPH denotes /
T7728 13702-13703 CD denotes 6
T7729 13703-13704 HYPH denotes /
T7730 13704-13705 CD denotes 7
T7731 13706-13708 VBZ denotes is
T7732 13719-13721 IN denotes by
T7733 13722-13725 DT denotes the
T7734 13734-13743 NNS denotes sequences
T7735 13726-13728 NN denotes GC
T7736 13729-13733 JJ denotes rich
T7737 13728-13729 HYPH denotes -
T7738 13744-13746 IN denotes on
T7739 13747-13750 DT denotes the
T7740 13758-13765 NN denotes segment
T7741 13751-13757 NN denotes duplex
T7742 13765-13892 sentence denotes Our results indicate that thymine-rich single-stranded DNA is required for initial loading and activation of the Mcm helicase.
T7743 13766-13769 PRP$ denotes Our
T7744 13770-13777 NNS denotes results
T7745 13778-13786 VBP denotes indicate
T7746 13787-13791 IN denotes that
T7747 13828-13836 VBN denotes required
T7748 13792-13799 NN denotes thymine
T7749 13800-13804 JJ denotes rich
T7750 13799-13800 HYPH denotes -
T7751 13821-13824 NN denotes DNA
T7752 13805-13811 JJ denotes single
T7753 13812-13820 VBN denotes stranded
T7754 13811-13812 HYPH denotes -
T7755 13825-13827 VBZ denotes is
T7756 13837-13840 IN denotes for
T7757 13841-13848 JJ denotes initial
T7758 13849-13856 NN denotes loading
T7759 13857-13860 CC denotes and
T7760 13861-13871 NN denotes activation
T7761 13872-13874 IN denotes of
T7762 13875-13878 DT denotes the
T7763 13883-13891 NN denotes helicase
T7764 13879-13882 NN denotes Mcm
T7765 13891-13892 . denotes .
T7766 13892-13996 sentence denotes However, it is not known whether thymine sequences are required for processive unwinding of duplex DNA.
T7767 13893-13900 RB denotes However
T7768 13912-13917 VBN denotes known
T7769 13900-13902 , denotes ,
T7770 13902-13904 PRP denotes it
T7771 13905-13907 VBZ denotes is
T7772 13908-13911 RB denotes not
T7773 13918-13925 IN denotes whether
T7774 13948-13956 VBN denotes required
T7775 13926-13933 NN denotes thymine
T7776 13934-13943 NNS denotes sequences
T7777 13944-13947 VBP denotes are
T7778 13957-13960 IN denotes for
T7779 13961-13971 JJ denotes processive
T7780 13972-13981 NN denotes unwinding
T7781 13982-13984 IN denotes of
T7782 13985-13991 NN denotes duplex
T7783 13992-13995 NN denotes DNA
T7784 13995-13996 . denotes .
T7785 13996-14112 sentence denotes Therefore, we have examined whether the nucleotide composition of the duplex region affects its unwinding activity.
T7786 13997-14006 RB denotes Therefore
T7787 14016-14024 VBN denotes examined
T7788 14006-14008 , denotes ,
T7789 14008-14010 PRP denotes we
T7790 14011-14015 VBP denotes have
T7791 14025-14032 IN denotes whether
T7792 14081-14088 VBZ denotes affects
T7793 14033-14036 DT denotes the
T7794 14048-14059 NN denotes composition
T7795 14037-14047 NN denotes nucleotide
T7796 14060-14062 IN denotes of
T7797 14063-14066 DT denotes the
T7798 14074-14080 NN denotes region
T7799 14067-14073 NN denotes duplex
T7800 14089-14092 PRP$ denotes its
T7801 14103-14111 NN denotes activity
T7802 14093-14102 NN denotes unwinding
T7803 14111-14112 . denotes .
T7804 14112-14250 sentence denotes To address this issue, we constructed a series of T-tailed Y-fork structures (T-fork) containing various sequences in the duplex segment.
T7805 14113-14115 TO denotes To
T7806 14116-14123 VB denotes address
T7807 14139-14150 VBD denotes constructed
T7808 14124-14128 DT denotes this
T7809 14129-14134 NN denotes issue
T7810 14134-14136 , denotes ,
T7811 14136-14138 PRP denotes we
T7812 14151-14152 DT denotes a
T7813 14153-14159 NN denotes series
T7814 14160-14162 IN denotes of
T7815 14163-14164 NN denotes T
T7816 14165-14171 VBN denotes tailed
T7817 14164-14165 HYPH denotes -
T7818 14179-14189 NNS denotes structures
T7819 14172-14173 NN denotes Y
T7820 14174-14178 NN denotes fork
T7821 14173-14174 HYPH denotes -
T7822 14190-14191 -LRB- denotes (
T7823 14191-14192 NN denotes T
T7824 14193-14197 NN denotes fork
T7825 14192-14193 HYPH denotes -
T7826 14197-14198 -RRB- denotes )
T7827 14199-14209 VBG denotes containing
T7828 14210-14217 JJ denotes various
T7829 14218-14227 NNS denotes sequences
T7830 14228-14230 IN denotes in
T7831 14231-14234 DT denotes the
T7832 14242-14249 NN denotes segment
T7833 14235-14241 NN denotes duplex
T7834 14249-14250 . denotes .
T7835 14250-14323 sentence denotes They carried varied contents of cytosine residues on the 3′-tail strand.
T7836 14251-14255 PRP denotes They
T7837 14256-14263 VBD denotes carried
T7838 14264-14270 VBN denotes varied
T7839 14271-14279 NNS denotes contents
T7840 14280-14282 IN denotes of
T7841 14283-14291 NN denotes cytosine
T7842 14292-14300 NNS denotes residues
T7843 14301-14303 IN denotes on
T7844 14304-14307 DT denotes the
T7845 14316-14322 NN denotes strand
T7846 14308-14309 CD denotes 3
T7847 14311-14315 NN denotes tail
T7848 14309-14310 SYM denotes
T7849 14310-14311 HYPH denotes -
T7850 14322-14323 . denotes .
T7851 14323-14500 sentence denotes In gel shift assays, Mcm4/6/7 bound to these Y-fork substrates with identical affinity (Figure 8A), consistent with the notion that the Mcm4/6/7 binds to single-stranded tails.
T7852 14324-14326 IN denotes In
T7853 14354-14359 VBD denotes bound
T7854 14327-14330 NN denotes gel
T7855 14331-14336 NN denotes shift
T7856 14337-14343 NNS denotes assays
T7857 14343-14345 , denotes ,
T7858 14345-14349 NN denotes Mcm4
T7859 14349-14350 HYPH denotes /
T7860 14350-14351 CD denotes 6
T7861 14351-14352 HYPH denotes /
T7862 14352-14353 CD denotes 7
T7863 14360-14362 IN denotes to
T7864 14363-14368 DT denotes these
T7865 14376-14386 NNS denotes substrates
T7866 14369-14370 NN denotes Y
T7867 14371-14375 NN denotes fork
T7868 14370-14371 HYPH denotes -
T7869 14387-14391 IN denotes with
T7870 14392-14401 JJ denotes identical
T7871 14402-14410 NN denotes affinity
T7872 14411-14412 -LRB- denotes (
T7873 14419-14421 NN denotes 8A
T7874 14412-14418 NN denotes Figure
T7875 14421-14422 -RRB- denotes )
T7876 14422-14424 , denotes ,
T7877 14424-14434 JJ denotes consistent
T7878 14435-14439 IN denotes with
T7879 14440-14443 DT denotes the
T7880 14444-14450 NN denotes notion
T7881 14451-14455 IN denotes that
T7882 14469-14474 VBZ denotes binds
T7883 14456-14459 DT denotes the
T7884 14460-14464 NN denotes Mcm4
T7885 14464-14465 HYPH denotes /
T7886 14465-14466 CD denotes 6
T7887 14466-14467 HYPH denotes /
T7888 14467-14468 CD denotes 7
T7889 14475-14477 IN denotes to
T7890 14478-14484 JJ denotes single
T7891 14485-14493 VBN denotes stranded
T7892 14484-14485 HYPH denotes -
T7893 14494-14499 NNS denotes tails
T7894 14499-14500 . denotes .
T7895 14500-14652 sentence denotes However, in DNA helicase assays, T-fork/(C:G)49 was hardly displaced by Mcm4/6/7, but was readily displaced by SV40 T-antigen DNA helicase (Figure 8B).
T7896 14501-14508 RB denotes However
T7897 14560-14569 VBN denotes displaced
T7898 14508-14510 , denotes ,
T7899 14510-14512 IN denotes in
T7900 14513-14516 NN denotes DNA
T7901 14517-14525 NN denotes helicase
T7902 14526-14532 NNS denotes assays
T7903 14532-14534 , denotes ,
T7904 14534-14535 NN denotes T
T7905 14536-14540 NN denotes fork
T7906 14535-14536 HYPH denotes -
T7907 14540-14541 HYPH denotes /
T7908 14541-14542 -LRB- denotes (
T7909 14544-14545 NN denotes G
T7910 14542-14543 NN denotes C
T7911 14543-14544 : denotes :
T7912 14545-14546 -RRB- denotes )
T7913 14546-14548 CD denotes 49
T7914 14549-14552 VBD denotes was
T7915 14553-14559 RB denotes hardly
T7916 14570-14572 IN denotes by
T7917 14573-14577 NN denotes Mcm4
T7918 14577-14578 HYPH denotes /
T7919 14578-14579 CD denotes 6
T7920 14579-14580 HYPH denotes /
T7921 14580-14581 CD denotes 7
T7922 14581-14583 , denotes ,
T7923 14583-14586 CC denotes but
T7924 14587-14590 VBD denotes was
T7925 14599-14608 VBN denotes displaced
T7926 14591-14598 RB denotes readily
T7927 14609-14611 IN denotes by
T7928 14612-14616 NN denotes SV40
T7929 14631-14639 NN denotes helicase
T7930 14617-14618 NN denotes T
T7931 14619-14626 NN denotes antigen
T7932 14618-14619 HYPH denotes -
T7933 14627-14630 NN denotes DNA
T7934 14640-14641 -LRB- denotes (
T7935 14648-14650 NN denotes 8B
T7936 14641-14647 NN denotes Figure
T7937 14650-14651 -RRB- denotes )
T7938 14651-14652 . denotes .
T7939 14652-14818 sentence denotes When thymine or adenine is inserted as every third nucleotide (repeats of CCT or CCA), the extent of unwinding increased (T-fork/(CCT:GGA)16 and T-fork/(CCA:GGT)16).
T7940 14653-14657 WRB denotes When
T7941 14680-14688 VBN denotes inserted
T7942 14658-14665 NN denotes thymine
T7943 14666-14668 CC denotes or
T7944 14669-14676 NN denotes adenine
T7945 14677-14679 VBZ denotes is
T7946 14764-14773 VBD denotes increased
T7947 14689-14691 IN denotes as
T7948 14692-14697 DT denotes every
T7949 14704-14714 NN denotes nucleotide
T7950 14698-14703 JJ denotes third
T7951 14715-14716 -LRB- denotes (
T7952 14716-14723 NNS denotes repeats
T7953 14724-14726 IN denotes of
T7954 14727-14730 NN denotes CCT
T7955 14731-14733 CC denotes or
T7956 14734-14737 NN denotes CCA
T7957 14737-14738 -RRB- denotes )
T7958 14738-14740 , denotes ,
T7959 14740-14743 DT denotes the
T7960 14744-14750 NN denotes extent
T7961 14751-14753 IN denotes of
T7962 14754-14763 NN denotes unwinding
T7963 14774-14775 -LRB- denotes (
T7964 14787-14790 NN denotes GGA
T7965 14775-14776 NN denotes T
T7966 14777-14781 NN denotes fork
T7967 14776-14777 HYPH denotes -
T7968 14781-14782 HYPH denotes /
T7969 14782-14783 -LRB- denotes (
T7970 14783-14786 NN denotes CCT
T7971 14786-14787 : denotes :
T7972 14790-14791 -RRB- denotes )
T7973 14791-14793 CD denotes 16
T7974 14794-14797 CC denotes and
T7975 14798-14799 NN denotes T
T7976 14800-14804 NN denotes fork
T7977 14799-14800 HYPH denotes -
T7978 14810-14813 NN denotes GGT
T7979 14804-14805 HYPH denotes /
T7980 14805-14806 -LRB- denotes (
T7981 14806-14809 NN denotes CCA
T7982 14809-14810 : denotes :
T7983 14813-14814 -RRB- denotes )
T7984 14814-14816 CD denotes 16
T7985 14816-14817 -RRB- denotes )
T7986 14817-14818 . denotes .
T7987 14818-15023 sentence denotes The efficiency of unwinding is roughly correlated with the content of GC pairs in the duplex segment [T-fork/(CCAA:GGTT)12, T-fork/(CCTT:GGAA)12, T-fork/(CAAA:GTTT)12 and T-fork/(CTTT:GAAA)12; Figure 8B].
T7988 14819-14822 DT denotes The
T7989 14823-14833 NN denotes efficiency
T7990 14858-14868 VBN denotes correlated
T7991 14834-14836 IN denotes of
T7992 14837-14846 NN denotes unwinding
T7993 14847-14849 VBZ denotes is
T7994 14850-14857 RB denotes roughly
T7995 14869-14873 IN denotes with
T7996 14874-14877 DT denotes the
T7997 14878-14885 NN denotes content
T7998 14886-14888 IN denotes of
T7999 14889-14891 NN denotes GC
T8000 14892-14897 NNS denotes pairs
T8001 14898-14900 IN denotes in
T8002 14901-14904 DT denotes the
T8003 14912-14919 NN denotes segment
T8004 14905-14911 NN denotes duplex
T8005 14920-14921 -LRB- denotes [
T8006 14934-14938 NN denotes GGTT
T8007 14921-14922 NN denotes T
T8008 14923-14927 NN denotes fork
T8009 14922-14923 HYPH denotes -
T8010 14927-14928 HYPH denotes /
T8011 14928-14929 -LRB- denotes (
T8012 14929-14933 NN denotes CCAA
T8013 14933-14934 : denotes :
T8014 14938-14939 -RRB- denotes )
T8015 14939-14941 CD denotes 12
T8016 14941-14943 , denotes ,
T8017 14943-14944 NN denotes T
T8018 14945-14949 NN denotes fork
T8019 14944-14945 HYPH denotes -
T8020 14956-14960 NN denotes GGAA
T8021 14949-14950 HYPH denotes /
T8022 14950-14951 -LRB- denotes (
T8023 14951-14955 NN denotes CCTT
T8024 14955-14956 : denotes :
T8025 14960-14961 -RRB- denotes )
T8026 14961-14963 CD denotes 12
T8027 14963-14965 , denotes ,
T8028 14965-14966 NN denotes T
T8029 14967-14971 NN denotes fork
T8030 14966-14967 HYPH denotes -
T8031 14978-14982 NN denotes GTTT
T8032 14971-14972 HYPH denotes /
T8033 14972-14973 -LRB- denotes (
T8034 14973-14977 NN denotes CAAA
T8035 14977-14978 : denotes :
T8036 14982-14983 -RRB- denotes )
T8037 14983-14985 CD denotes 12
T8038 14986-14989 CC denotes and
T8039 14990-14991 NN denotes T
T8040 14992-14996 NN denotes fork
T8041 14991-14992 HYPH denotes -
T8042 15003-15007 NN denotes GAAA
T8043 14996-14997 HYPH denotes /
T8044 14997-14998 -LRB- denotes (
T8045 14998-15002 NN denotes CTTT
T8046 15002-15003 : denotes :
T8047 15007-15008 -RRB- denotes )
T8048 15008-15010 CD denotes 12
T8049 15010-15011 : denotes ;
T8050 15019-15021 NN denotes 8B
T8051 15012-15018 NN denotes Figure
T8052 15021-15022 -RRB- denotes ]
T8053 15022-15023 . denotes .
T8054 15023-15119 sentence denotes It appears that the duplex segment containing <50% GC pairs is efficiently unwound (Figure 8C).
T8055 15024-15026 PRP denotes It
T8056 15027-15034 VBZ denotes appears
T8057 15035-15039 IN denotes that
T8058 15099-15106 VBN denotes unwound
T8059 15040-15043 DT denotes the
T8060 15051-15058 NN denotes segment
T8061 15044-15050 NN denotes duplex
T8062 15059-15069 VBG denotes containing
T8063 15070-15071 SYM denotes <
T8064 15071-15073 CD denotes 50
T8065 15073-15074 NN denotes %
T8066 15078-15083 NNS denotes pairs
T8067 15075-15077 NN denotes GC
T8068 15084-15086 VBZ denotes is
T8069 15087-15098 RB denotes efficiently
T8070 15107-15108 -LRB- denotes (
T8071 15115-15117 NN denotes 8C
T8072 15108-15114 NN denotes Figure
T8073 15117-15118 -RRB- denotes )
T8074 15118-15119 . denotes .
T8075 15119-15232 sentence denotes We next examined the effect of GC-rich segments on a partial heteroduplex DNA on a single-stranded circular DNA.
T8076 15120-15122 PRP denotes We
T8077 15128-15136 VBD denotes examined
T8078 15123-15127 RB denotes next
T8079 15137-15140 DT denotes the
T8080 15141-15147 NN denotes effect
T8081 15148-15150 IN denotes of
T8082 15151-15153 NN denotes GC
T8083 15154-15158 JJ denotes rich
T8084 15153-15154 HYPH denotes -
T8085 15159-15167 NNS denotes segments
T8086 15168-15170 IN denotes on
T8087 15171-15172 DT denotes a
T8088 15194-15197 NN denotes DNA
T8089 15173-15180 JJ denotes partial
T8090 15181-15193 NN denotes heteroduplex
T8091 15198-15200 IN denotes on
T8092 15201-15202 DT denotes a
T8093 15228-15231 NN denotes DNA
T8094 15203-15209 JJ denotes single
T8095 15210-15218 VBN denotes stranded
T8096 15209-15210 HYPH denotes -
T8097 15219-15227 JJ denotes circular
T8098 15231-15232 . denotes .
T8099 15232-15490 sentence denotes We have constructed two sets of 5′-tailed partial heteroduplex DNA substrates containing duplex regions of variable lengths; one on M13mp18 vector and the other on M13mp19 containing a 66 nt long G-rich segment downstream of the hybridizing oligonucleotide.
T8100 15233-15235 PRP denotes We
T8101 15241-15252 VBN denotes constructed
T8102 15236-15240 VBP denotes have
T8103 15253-15256 CD denotes two
T8104 15257-15261 NNS denotes sets
T8105 15262-15264 IN denotes of
T8106 15265-15266 CD denotes 5
T8107 15268-15274 VBN denotes tailed
T8108 15266-15267 SYM denotes
T8109 15267-15268 HYPH denotes -
T8110 15300-15310 NNS denotes substrates
T8111 15275-15282 JJ denotes partial
T8112 15283-15295 NN denotes heteroduplex
T8113 15296-15299 NN denotes DNA
T8114 15311-15321 VBG denotes containing
T8115 15322-15328 NN denotes duplex
T8116 15329-15336 NNS denotes regions
T8117 15337-15339 IN denotes of
T8118 15340-15348 JJ denotes variable
T8119 15349-15356 NNS denotes lengths
T8120 15356-15357 : denotes ;
T8121 15358-15361 CD denotes one
T8122 15362-15364 IN denotes on
T8123 15365-15372 NN denotes M13mp18
T8124 15373-15379 NN denotes vector
T8125 15380-15383 CC denotes and
T8126 15384-15387 DT denotes the
T8127 15388-15393 JJ denotes other
T8128 15394-15396 IN denotes on
T8129 15397-15404 NN denotes M13mp19
T8130 15405-15415 VBG denotes containing
T8131 15416-15417 DT denotes a
T8132 15436-15443 NN denotes segment
T8133 15418-15420 CD denotes 66
T8134 15421-15423 NN denotes nt
T8135 15424-15428 JJ denotes long
T8136 15429-15430 NN denotes G
T8137 15431-15435 JJ denotes rich
T8138 15430-15431 HYPH denotes -
T8139 15444-15454 RB denotes downstream
T8140 15455-15457 IN denotes of
T8141 15458-15461 DT denotes the
T8142 15474-15489 NN denotes oligonucleotide
T8143 15462-15473 VBG denotes hybridizing
T8144 15489-15490 . denotes .
T8145 15490-15661 sentence denotes We found that the Mcm4/6/7 helicase can displace duplex DNA up to 350 nt long on its own on the former substrate (Figure 8D, left), consistent with previous results (13).
T8146 15491-15493 PRP denotes We
T8147 15494-15499 VBD denotes found
T8148 15500-15504 IN denotes that
T8149 15531-15539 VB denotes displace
T8150 15505-15508 DT denotes the
T8151 15518-15526 NN denotes helicase
T8152 15509-15513 NN denotes Mcm4
T8153 15513-15514 HYPH denotes /
T8154 15514-15515 CD denotes 6
T8155 15515-15516 HYPH denotes /
T8156 15516-15517 CD denotes 7
T8157 15527-15530 MD denotes can
T8158 15540-15546 NN denotes duplex
T8159 15547-15550 NN denotes DNA
T8160 15551-15553 IN denotes up
T8161 15557-15560 CD denotes 350
T8162 15554-15556 IN denotes to
T8163 15561-15563 NN denotes nt
T8164 15564-15568 JJ denotes long
T8165 15569-15571 IN denotes on
T8166 15572-15575 PRP$ denotes its
T8167 15576-15579 JJ denotes own
T8168 15580-15582 IN denotes on
T8169 15583-15586 DT denotes the
T8170 15594-15603 NN denotes substrate
T8171 15587-15593 JJ denotes former
T8172 15604-15605 -LRB- denotes (
T8173 15612-15614 NN denotes 8D
T8174 15605-15611 NN denotes Figure
T8175 15614-15616 , denotes ,
T8176 15616-15620 JJ denotes left
T8177 15620-15621 -RRB- denotes )
T8178 15621-15623 , denotes ,
T8179 15623-15633 JJ denotes consistent
T8180 15634-15638 IN denotes with
T8181 15639-15647 JJ denotes previous
T8182 15648-15655 NNS denotes results
T8183 15656-15657 -LRB- denotes (
T8184 15657-15659 CD denotes 13
T8185 15659-15660 -RRB- denotes )
T8186 15660-15661 . denotes .
T8187 15661-15908 sentence denotes In contrast, displacement was inhibited over the GC-rich segments on the latter substrate (Figure 8D, right panel), although displacement up to 250 nt in length, albeit at a reduced level, was observed at a high concentration of Mcm4/6/7 complex.
T8188 15662-15664 IN denotes In
T8189 15692-15701 VBN denotes inhibited
T8190 15665-15673 NN denotes contrast
T8191 15673-15675 , denotes ,
T8192 15675-15687 NN denotes displacement
T8193 15688-15691 VBD denotes was
T8194 15702-15706 IN denotes over
T8195 15707-15710 DT denotes the
T8196 15719-15727 NNS denotes segments
T8197 15711-15713 NN denotes GC
T8198 15714-15718 JJ denotes rich
T8199 15713-15714 HYPH denotes -
T8200 15728-15730 IN denotes on
T8201 15731-15734 DT denotes the
T8202 15742-15751 NN denotes substrate
T8203 15735-15741 JJ denotes latter
T8204 15752-15753 -LRB- denotes (
T8205 15770-15775 NN denotes panel
T8206 15753-15759 NN denotes Figure
T8207 15760-15762 NN denotes 8D
T8208 15762-15764 , denotes ,
T8209 15764-15769 JJ denotes right
T8210 15775-15776 -RRB- denotes )
T8211 15776-15778 , denotes ,
T8212 15778-15786 IN denotes although
T8213 15855-15863 VBN denotes observed
T8214 15787-15799 NN denotes displacement
T8215 15800-15802 IN denotes up
T8216 15806-15809 CD denotes 250
T8217 15803-15805 IN denotes to
T8218 15810-15812 NN denotes nt
T8219 15813-15815 IN denotes in
T8220 15816-15822 NN denotes length
T8221 15822-15824 , denotes ,
T8222 15824-15830 IN denotes albeit
T8223 15831-15833 IN denotes at
T8224 15834-15835 DT denotes a
T8225 15844-15849 NN denotes level
T8226 15836-15843 VBN denotes reduced
T8227 15849-15851 , denotes ,
T8228 15851-15854 VBD denotes was
T8229 15864-15866 IN denotes at
T8230 15867-15868 DT denotes a
T8231 15874-15887 NN denotes concentration
T8232 15869-15873 JJ denotes high
T8233 15888-15890 IN denotes of
T8234 15891-15895 NN denotes Mcm4
T8235 15900-15907 NN denotes complex
T8236 15895-15896 HYPH denotes /
T8237 15896-15897 CD denotes 6
T8238 15897-15898 HYPH denotes /
T8239 15898-15899 CD denotes 7
T8240 15907-15908 . denotes .
T8241 15908-16045 sentence denotes This result is consistent with that on Y-fork and indicates that GC-rich duplex segment is inhibitory for unwinding by the Mcm helicase.
T8242 15909-15913 DT denotes This
T8243 15914-15920 NN denotes result
T8244 15921-15923 VBZ denotes is
T8245 15924-15934 JJ denotes consistent
T8246 15935-15939 IN denotes with
T8247 15940-15944 DT denotes that
T8248 15945-15947 IN denotes on
T8249 15948-15949 NN denotes Y
T8250 15950-15954 NN denotes fork
T8251 15949-15950 HYPH denotes -
T8252 15955-15958 CC denotes and
T8253 15959-15968 VBZ denotes indicates
T8254 15969-15973 IN denotes that
T8255 15997-15999 VBZ denotes is
T8256 15974-15976 NN denotes GC
T8257 15977-15981 JJ denotes rich
T8258 15976-15977 HYPH denotes -
T8259 15989-15996 NN denotes segment
T8260 15982-15988 NN denotes duplex
T8261 16000-16010 JJ denotes inhibitory
T8262 16011-16014 IN denotes for
T8263 16015-16024 NN denotes unwinding
T8264 16025-16027 IN denotes by
T8265 16028-16031 DT denotes the
T8266 16036-16044 NN denotes helicase
T8267 16032-16035 NN denotes Mcm
T8268 16044-16045 . denotes .
T8269 16045-16210 sentence denotes These results may indicate that the presence of thymine–adenine pairs with a certain frequency in the duplex region may facilitate continuous unwinding by Mcm4/6/7.
T8270 16046-16051 DT denotes These
T8271 16052-16059 NNS denotes results
T8272 16064-16072 VB denotes indicate
T8273 16060-16063 MD denotes may
T8274 16073-16077 IN denotes that
T8275 16166-16176 VB denotes facilitate
T8276 16078-16081 DT denotes the
T8277 16082-16090 NN denotes presence
T8278 16091-16093 IN denotes of
T8279 16094-16101 NN denotes thymine
T8280 16102-16109 NN denotes adenine
T8281 16101-16102 HYPH denotes
T8282 16110-16115 NNS denotes pairs
T8283 16116-16120 IN denotes with
T8284 16121-16122 DT denotes a
T8285 16131-16140 NN denotes frequency
T8286 16123-16130 JJ denotes certain
T8287 16141-16143 IN denotes in
T8288 16144-16147 DT denotes the
T8289 16155-16161 NN denotes region
T8290 16148-16154 NN denotes duplex
T8291 16162-16165 MD denotes may
T8292 16177-16187 JJ denotes continuous
T8293 16188-16197 NN denotes unwinding
T8294 16198-16200 IN denotes by
T8295 16201-16205 NN denotes Mcm4
T8296 16205-16206 HYPH denotes /
T8297 16206-16207 CD denotes 6
T8298 16207-16208 HYPH denotes /
T8299 16208-16209 CD denotes 7
T8300 16209-16210 . denotes .
T8301 16210-16319 sentence denotes Alternatively, Mcm4/6/7 is not efficient enough to displace thermodynamically stable GC-base-paired segment.
T8302 16211-16224 RB denotes Alternatively
T8303 16235-16237 VBZ denotes is
T8304 16224-16226 , denotes ,
T8305 16226-16230 NN denotes Mcm4
T8306 16230-16231 HYPH denotes /
T8307 16231-16232 CD denotes 6
T8308 16232-16233 HYPH denotes /
T8309 16233-16234 CD denotes 7
T8310 16238-16241 RB denotes not
T8311 16242-16251 JJ denotes efficient
T8312 16252-16258 RB denotes enough
T8313 16259-16261 TO denotes to
T8314 16262-16270 VB denotes displace
T8315 16271-16288 RB denotes thermodynamically
T8316 16289-16295 JJ denotes stable
T8317 16311-16318 NN denotes segment
T8318 16296-16298 NN denotes GC
T8319 16304-16310 VBN denotes paired
T8320 16298-16299 HYPH denotes -
T8321 16299-16303 NN denotes base
T8322 16303-16304 HYPH denotes -
T8323 16318-16319 . denotes .
T8324 16319-16464 sentence denotes In order to distinguish these two possibilities, we designed a new T-fork substrate containing inosine (I) residue instead of guanosine residue.
T8325 16320-16322 IN denotes In
T8326 16372-16380 VBD denotes designed
T8327 16323-16328 NN denotes order
T8328 16329-16331 TO denotes to
T8329 16332-16343 VB denotes distinguish
T8330 16344-16349 DT denotes these
T8331 16354-16367 NNS denotes possibilities
T8332 16350-16353 CD denotes two
T8333 16367-16369 , denotes ,
T8334 16369-16371 PRP denotes we
T8335 16381-16382 DT denotes a
T8336 16394-16403 NN denotes substrate
T8337 16383-16386 JJ denotes new
T8338 16387-16388 NN denotes T
T8339 16389-16393 NN denotes fork
T8340 16388-16389 HYPH denotes -
T8341 16404-16414 VBG denotes containing
T8342 16415-16422 NN denotes inosine
T8343 16427-16434 NN denotes residue
T8344 16423-16424 -LRB- denotes (
T8345 16424-16425 NN denotes I
T8346 16425-16426 -RRB- denotes )
T8347 16435-16442 RB denotes instead
T8348 16443-16445 IN denotes of
T8349 16446-16455 NN denotes guanosine
T8350 16456-16463 NN denotes residue
T8351 16463-16464 . denotes .
T8352 16464-16637 sentence denotes The thermal stability of the I:C base pair is lower than that of the G:C base pair in duplex DNA due to loss of one hydrogen bond and is even lower than A:T base pair (31).
T8353 16465-16468 DT denotes The
T8354 16477-16486 NN denotes stability
T8355 16469-16476 JJ denotes thermal
T8356 16508-16510 VBZ denotes is
T8357 16487-16489 IN denotes of
T8358 16490-16493 DT denotes the
T8359 16503-16507 NN denotes pair
T8360 16494-16495 NN denotes I
T8361 16496-16497 NN denotes C
T8362 16495-16496 : denotes :
T8363 16498-16502 NN denotes base
T8364 16511-16516 JJR denotes lower
T8365 16517-16521 IN denotes than
T8366 16522-16526 DT denotes that
T8367 16527-16529 IN denotes of
T8368 16530-16533 DT denotes the
T8369 16543-16547 NN denotes pair
T8370 16534-16535 NN denotes G
T8371 16536-16537 NN denotes C
T8372 16535-16536 : denotes :
T8373 16538-16542 NN denotes base
T8374 16548-16550 IN denotes in
T8375 16551-16557 NN denotes duplex
T8376 16558-16561 NN denotes DNA
T8377 16562-16565 IN denotes due
T8378 16566-16568 IN denotes to
T8379 16569-16573 NN denotes loss
T8380 16574-16576 IN denotes of
T8381 16577-16580 CD denotes one
T8382 16590-16594 NN denotes bond
T8383 16581-16589 NN denotes hydrogen
T8384 16595-16598 CC denotes and
T8385 16599-16601 VBZ denotes is
T8386 16602-16606 RB denotes even
T8387 16607-16612 JJR denotes lower
T8388 16613-16617 IN denotes than
T8389 16618-16619 NN denotes A
T8390 16620-16621 NN denotes T
T8391 16619-16620 : denotes :
T8392 16627-16631 NN denotes pair
T8393 16622-16626 NN denotes base
T8394 16632-16633 -LRB- denotes (
T8395 16633-16635 CD denotes 31
T8396 16635-16636 -RRB- denotes )
T8397 16636-16637 . denotes .
T8398 16637-16768 sentence denotes We constructed the T-tailed fork substrates containing the (GCC:CGG)10, (GCC:CIG)10 or (GAA:CTT)10 duplex DNA segment (Figure 8E).
T8399 16638-16640 PRP denotes We
T8400 16641-16652 VBD denotes constructed
T8401 16653-16656 DT denotes the
T8402 16671-16681 NNS denotes substrates
T8403 16657-16658 NN denotes T
T8404 16659-16665 VBN denotes tailed
T8405 16658-16659 HYPH denotes -
T8406 16666-16670 NN denotes fork
T8407 16682-16692 VBG denotes containing
T8408 16693-16696 DT denotes the
T8409 16748-16755 NN denotes segment
T8410 16697-16698 -LRB- denotes (
T8411 16702-16705 NN denotes CGG
T8412 16698-16701 NN denotes GCC
T8413 16701-16702 : denotes :
T8414 16705-16706 -RRB- denotes )
T8415 16706-16708 CD denotes 10
T8416 16708-16710 , denotes ,
T8417 16710-16711 -LRB- denotes (
T8418 16715-16718 NN denotes CIG
T8419 16711-16714 NN denotes GCC
T8420 16714-16715 : denotes :
T8421 16718-16719 -RRB- denotes )
T8422 16719-16721 CD denotes 10
T8423 16722-16724 CC denotes or
T8424 16725-16726 -LRB- denotes (
T8425 16730-16733 NN denotes CTT
T8426 16726-16729 NN denotes GAA
T8427 16729-16730 : denotes :
T8428 16733-16734 -RRB- denotes )
T8429 16734-16736 CD denotes 10
T8430 16737-16743 NN denotes duplex
T8431 16744-16747 NN denotes DNA
T8432 16756-16757 -LRB- denotes (
T8433 16764-16766 NN denotes 8E
T8434 16757-16763 NN denotes Figure
T8435 16766-16767 -RRB- denotes )
T8436 16767-16768 . denotes .
T8437 16768-16914 sentence denotes Mcm4/6/7 hardly displaced the 31 nt long duplex of GCC:CGG repeats, whereas the T-fork/(GAA:CTT)10 was displaced efficiently, as described above.
T8438 16769-16773 NN denotes Mcm4
T8439 16785-16794 VBD denotes displaced
T8440 16773-16774 HYPH denotes /
T8441 16774-16775 CD denotes 6
T8442 16775-16776 HYPH denotes /
T8443 16776-16777 CD denotes 7
T8444 16778-16784 RB denotes hardly
T8445 16795-16798 DT denotes the
T8446 16810-16816 NN denotes duplex
T8447 16799-16801 CD denotes 31
T8448 16802-16804 NN denotes nt
T8449 16805-16809 JJ denotes long
T8450 16817-16819 IN denotes of
T8451 16820-16823 NN denotes GCC
T8452 16824-16827 NN denotes CGG
T8453 16823-16824 : denotes :
T8454 16828-16835 NNS denotes repeats
T8455 16835-16837 , denotes ,
T8456 16837-16844 IN denotes whereas
T8457 16872-16881 VBN denotes displaced
T8458 16845-16848 DT denotes the
T8459 16861-16864 NN denotes CTT
T8460 16849-16850 NN denotes T
T8461 16851-16855 NN denotes fork
T8462 16850-16851 HYPH denotes -
T8463 16855-16856 HYPH denotes /
T8464 16856-16857 -LRB- denotes (
T8465 16857-16860 NN denotes GAA
T8466 16860-16861 : denotes :
T8467 16864-16865 -RRB- denotes )
T8468 16865-16867 CD denotes 10
T8469 16868-16871 VBD denotes was
T8470 16882-16893 RB denotes efficiently
T8471 16893-16895 , denotes ,
T8472 16895-16897 IN denotes as
T8473 16898-16907 VBN denotes described
T8474 16908-16913 RB denotes above
T8475 16913-16914 . denotes .
T8476 16914-17163 sentence denotes T-fork/(GCC:CIG)10 was displaced with efficiency much greater than that of T-fork/(GCC:CGG)10, indicating that the thermostability of the duplex segment, not the lack of AT base pair, is responsible for inability of Mcm4/6/7 to displace the duplex.
T8477 16915-16916 NN denotes T
T8478 16917-16921 NN denotes fork
T8479 16916-16917 HYPH denotes -
T8480 16927-16930 NN denotes CIG
T8481 16921-16922 HYPH denotes /
T8482 16922-16923 -LRB- denotes (
T8483 16923-16926 NN denotes GCC
T8484 16926-16927 : denotes :
T8485 16938-16947 VBN denotes displaced
T8486 16930-16931 -RRB- denotes )
T8487 16931-16933 CD denotes 10
T8488 16934-16937 VBD denotes was
T8489 16948-16952 IN denotes with
T8490 16953-16963 NN denotes efficiency
T8491 16964-16968 RB denotes much
T8492 16969-16976 JJR denotes greater
T8493 16977-16981 IN denotes than
T8494 16982-16986 DT denotes that
T8495 16987-16989 IN denotes of
T8496 16990-16991 NN denotes T
T8497 16992-16996 NN denotes fork
T8498 16991-16992 HYPH denotes -
T8499 17002-17005 NN denotes CGG
T8500 16996-16997 HYPH denotes /
T8501 16997-16998 -LRB- denotes (
T8502 16998-17001 NN denotes GCC
T8503 17001-17002 : denotes :
T8504 17005-17006 -RRB- denotes )
T8505 17006-17008 CD denotes 10
T8506 17008-17010 , denotes ,
T8507 17010-17020 VBG denotes indicating
T8508 17021-17025 IN denotes that
T8509 17099-17101 VBZ denotes is
T8510 17026-17029 DT denotes the
T8511 17030-17045 NN denotes thermostability
T8512 17046-17048 IN denotes of
T8513 17049-17052 DT denotes the
T8514 17060-17067 NN denotes segment
T8515 17053-17059 NN denotes duplex
T8516 17067-17069 , denotes ,
T8517 17069-17072 CC denotes not
T8518 17073-17076 DT denotes the
T8519 17077-17081 NN denotes lack
T8520 17082-17084 IN denotes of
T8521 17085-17087 NN denotes AT
T8522 17093-17097 NN denotes pair
T8523 17088-17092 NN denotes base
T8524 17097-17099 , denotes ,
T8525 17102-17113 JJ denotes responsible
T8526 17114-17117 IN denotes for
T8527 17118-17127 NN denotes inability
T8528 17128-17130 IN denotes of
T8529 17131-17135 NN denotes Mcm4
T8530 17135-17136 HYPH denotes /
T8531 17136-17137 CD denotes 6
T8532 17137-17138 HYPH denotes /
T8533 17138-17139 CD denotes 7
T8534 17140-17142 TO denotes to
T8535 17143-17151 VB denotes displace
T8536 17152-17155 DT denotes the
T8537 17156-17162 NN denotes duplex
T8538 17162-17163 . denotes .
R2153 T3428 T3429 nmod Mcm4,complex
R2154 T3429 T3434 nsubj complex,interacts
R2155 T3430 T3428 punct /,Mcm4
R2156 T3431 T3428 nummod 6,Mcm4
R2157 T3432 T3428 punct /,Mcm4
R2158 T3433 T3428 nummod 7,Mcm4
R2159 T3435 T3434 advmod primarily,interacts
R2160 T3436 T3434 prep with,interacts
R2161 T3437 T3438 det the,segment
R2162 T3438 T3436 pobj segment,with
R2163 T3439 T3440 amod single,stranded
R2164 T3440 T3438 amod stranded,segment
R2165 T3441 T3440 punct -,stranded
R2166 T3442 T3438 compound DNA,segment
R2167 T3444 T3445 nsubj Mcm4,binds
R2168 T3446 T3444 punct /,Mcm4
R2169 T3447 T3444 nummod 6,Mcm4
R2170 T3448 T3444 punct /,Mcm4
R2171 T3449 T3444 nummod 7,Mcm4
R2172 T3450 T3445 prep to,binds
R2173 T3451 T3452 punct ‘,substrates
R2174 T3452 T3450 pobj substrates,to
R2175 T3453 T3452 nmod bubble,substrates
R2176 T3454 T3452 punct ’,substrates
R2177 T3455 T3452 compound DNA,substrates
R2178 T3456 T3445 cc and,binds
R2179 T3457 T3445 conj unwinds,binds
R2180 T3458 T3459 det the,segments
R2181 T3459 T3457 dobj segments,unwinds
R2182 T3460 T3459 compound duplex,segments
R2183 T3461 T3462 advmod when,contains
R2184 T3462 T3457 advcl contains,unwinds
R2185 T3463 T3464 det the,segment
R2186 T3464 T3462 nsubj segment,contains
R2187 T3465 T3464 amod central,segment
R2188 T3466 T3467 amod single,stranded
R2189 T3467 T3464 amod stranded,segment
R2190 T3468 T3467 punct -,stranded
R2191 T3469 T3470 compound thymine,stretches
R2192 T3470 T3462 dobj stretches,contains
R2193 T3471 T3472 punct (,13
R2194 T3472 T3462 parataxis 13,contains
R2195 T3473 T3472 punct ),13
R2196 T3474 T3445 punct .,binds
R2197 T3476 T3477 prep In,conducted
R2198 T3478 T3476 pobj order,In
R2199 T3479 T3480 aux to,examine
R2200 T3480 T3478 acl examine,order
R2201 T3481 T3482 det the,mode
R2202 T3482 T3480 dobj mode,examine
R2203 T3483 T3482 prep of,mode
R2204 T3484 T3483 pobj binding,of
R2205 T3485 T3484 prep of,binding
R2206 T3486 T3485 pobj Mcm4,of
R2207 T3487 T3486 punct /,Mcm4
R2208 T3488 T3486 nummod 6,Mcm4
R2209 T3489 T3486 punct /,Mcm4
R2210 T3490 T3486 nummod 7,Mcm4
R2211 T3491 T3484 prep on,binding
R2212 T3492 T3493 compound bubble,DNAs
R2213 T3493 T3491 pobj DNAs,on
R2214 T3494 T3477 punct ", ",conducted
R2215 T3495 T3477 nsubj we,conducted
R2216 T3496 T3497 compound nuclease,assays
R2217 T3497 T3477 dobj assays,conducted
R2218 T3498 T3497 compound protection,assays
R2219 T3499 T3477 advcl using,conducted
R2220 T3500 T3501 amod labeled,DNAs
R2221 T3501 T3499 dobj DNAs,using
R2222 T3502 T3503 compound bubble,substrate
R2223 T3503 T3501 compound substrate,DNAs
R2224 T3504 T3501 cc and,DNAs
R2225 T3505 T3501 conj Mcm4,DNAs
R2226 T3506 T3505 punct /,Mcm4
R2227 T3507 T3505 nummod 6,Mcm4
R2228 T3508 T3505 punct /,Mcm4
R2229 T3509 T3505 nummod 7,Mcm4
R2230 T3510 T3477 prep in,conducted
R2231 T3511 T3512 det the,presence
R2232 T3512 T3510 pobj presence,in
R2233 T3513 T3512 prep of,presence
R2234 T3514 T3515 nmod ATP,S
R2235 T3515 T3513 pobj S,of
R2236 T3516 T3515 punct -,S
R2237 T3517 T3515 punct γ,S
R2238 T3518 T3515 punct -,S
R2239 T3519 T3520 dep which,permits
R2240 T3520 T3515 relcl permits,S
R2241 T3521 T3520 dobj binding,permits
R2242 T3522 T3521 prep to,binding
R2243 T3523 T3524 compound substrate,DNA
R2244 T3524 T3522 pobj DNA,to
R2245 T3525 T3520 cc but,permits
R2246 T3526 T3527 aux does,mobilize
R2247 T3527 T3520 conj mobilize,permits
R2248 T3528 T3527 neg not,mobilize
R2249 T3529 T3530 det the,helicase
R2250 T3530 T3527 dobj helicase,mobilize
R2251 T3531 T3477 punct .,conducted
R2252 T3533 T3534 prep At,detected
R2253 T3535 T3536 det an,concentration
R2254 T3536 T3533 pobj concentration,At
R2255 T3537 T3536 amod optimum,concentration
R2256 T3538 T3536 prep of,concentration
R2257 T3539 T3538 pobj DNase,of
R2258 T3540 T3539 nummod I,DNase
R2259 T3541 T3534 punct ", ",detected
R2260 T3542 T3543 amod strong,cleavages
R2261 T3543 T3534 nsubjpass cleavages,detected
R2262 T3544 T3534 auxpass were,detected
R2263 T3545 T3534 prep on,detected
R2264 T3546 T3547 det the,regions
R2265 T3547 T3545 pobj regions,on
R2266 T3548 T3549 nummod 21,bp
R2267 T3549 T3547 compound bp,regions
R2268 T3550 T3547 compound duplex,regions
R2269 T3551 T3534 prep at,detected
R2270 T3552 T3553 det both,ends
R2271 T3553 T3551 pobj ends,at
R2272 T3554 T3553 prep of,ends
R2273 T3555 T3556 det the,substrates
R2274 T3556 T3554 pobj substrates,of
R2275 T3557 T3534 punct ", ",detected
R2276 T3558 T3559 mark whereas,detected
R2277 T3559 T3534 advcl detected,detected
R2278 T3560 T3561 amod weaker,cleavages
R2279 T3561 T3559 nsubjpass cleavages,detected
R2280 T3562 T3559 auxpass were,detected
R2281 T3563 T3559 prep on,detected
R2282 T3564 T3565 det the,region
R2283 T3565 T3563 pobj region,on
R2284 T3566 T3565 amod central,region
R2285 T3567 T3568 amod single,stranded
R2286 T3568 T3565 amod stranded,region
R2287 T3569 T3568 punct -,stranded
R2288 T3570 T3559 punct ", ",detected
R2289 T3571 T3559 advcl consistent,detected
R2290 T3572 T3571 prep with,consistent
R2291 T3573 T3572 pobj preference,with
R2292 T3574 T3573 prep of,preference
R2293 T3575 T3574 pobj DNase,of
R2294 T3576 T3575 nummod I,DNase
R2295 T3577 T3573 prep to,preference
R2296 T3578 T3579 amod double,stranded
R2297 T3579 T3581 amod stranded,DNA
R2298 T3580 T3579 punct -,stranded
R2299 T3581 T3577 pobj DNA,to
R2300 T3582 T3534 punct .,detected
R2301 T3584 T3585 prep With,detected
R2302 T3586 T3587 det the,substrate
R2303 T3587 T3584 pobj substrate,With
R2304 T3588 T3587 nmod Bub66,substrate
R2305 T3589 T3588 punct /,Bub66
R2306 T3590 T3588 appos T,Bub66
R2307 T3591 T3590 punct -,T
R2308 T3592 T3590 amod rich,T
R2309 T3593 T3585 punct ", ",detected
R2310 T3594 T3595 amod strong,protection
R2311 T3595 T3585 nsubjpass protection,detected
R2312 T3596 T3585 auxpass was,detected
R2313 T3597 T3585 prep on,detected
R2314 T3598 T3599 det the,regions
R2315 T3599 T3597 pobj regions,on
R2316 T3600 T3599 amod entire,regions
R2317 T3601 T3602 amod single,stranded
R2318 T3602 T3599 amod stranded,regions
R2319 T3603 T3602 punct -,stranded
R2320 T3604 T3599 prep of,regions
R2321 T3605 T3606 preconj both,top
R2322 T3606 T3607 amod top,strands
R2323 T3607 T3604 pobj strands,of
R2324 T3608 T3606 cc and,top
R2325 T3609 T3606 conj bottom,top
R2326 T3610 T3585 prep with,detected
R2327 T3611 T3612 amod increasing,concentration
R2328 T3612 T3610 pobj concentration,with
R2329 T3613 T3612 prep of,concentration
R2330 T3614 T3613 pobj Mcm4,of
R2331 T3615 T3614 punct /,Mcm4
R2332 T3616 T3614 nummod 6,Mcm4
R2333 T3617 T3614 punct /,Mcm4
R2334 T3618 T3614 nummod 7,Mcm4
R2335 T3619 T3585 punct ", ",detected
R2336 T3620 T3585 advcl consistent,detected
R2337 T3621 T3620 prep with,consistent
R2338 T3622 T3623 amod high,affinity
R2339 T3623 T3621 pobj affinity,with
R2340 T3624 T3623 prep of,affinity
R2341 T3625 T3624 pobj Mcm4,of
R2342 T3626 T3625 punct /,Mcm4
R2343 T3627 T3625 nummod 6,Mcm4
R2344 T3628 T3625 punct /,Mcm4
R2345 T3629 T3625 nummod 7,Mcm4
R2346 T3630 T3623 prep to,affinity
R2347 T3631 T3632 nmod T,sequences
R2348 T3632 T3630 pobj sequences,to
R2349 T3633 T3631 punct -,T
R2350 T3634 T3631 amod rich,T
R2351 T3635 T3632 compound bubble,sequences
R2352 T3636 T3637 punct (,1A
R2353 T3637 T3585 parataxis 1A,detected
R2354 T3638 T3637 compound Figure,1A
R2355 T3639 T3637 punct ),1A
R2356 T3640 T3585 punct .,detected
R2357 T3642 T3643 amod Similar,protection
R2358 T3643 T3648 nsubjpass protection,detected
R2359 T3644 T3642 punct ", ",Similar
R2360 T3645 T3642 cc but,Similar
R2361 T3646 T3647 advmod less,significant
R2362 T3647 T3642 conj significant,Similar
R2363 T3649 T3648 auxpass was,detected
R2364 T3650 T3648 prep on,detected
R2365 T3651 T3652 det the,segment
R2366 T3652 T3650 pobj segment,on
R2367 T3653 T3654 amod single,stranded
R2368 T3654 T3652 amod stranded,segment
R2369 T3655 T3654 punct -,stranded
R2370 T3656 T3652 compound DNA,segment
R2371 T3657 T3652 prep with,segment
R2372 T3658 T3659 compound P1,nucleases
R2373 T3659 T3657 pobj nucleases,with
R2374 T3660 T3661 punct (,1A
R2375 T3661 T3652 parataxis 1A,segment
R2376 T3662 T3661 compound Figure,1A
R2377 T3663 T3661 punct ),1A
R2378 T3664 T3652 punct ", ",segment
R2379 T3665 T3666 dep which,is
R2380 T3666 T3652 relcl is,segment
R2381 T3667 T3666 acomp specific,is
R2382 T3668 T3667 prep to,specific
R2383 T3669 T3670 amod single,stranded
R2384 T3670 T3672 amod stranded,DNA
R2385 T3671 T3670 punct -,stranded
R2386 T3672 T3668 pobj DNA,to
R2387 T3673 T3648 punct .,detected
R2388 T3675 T3676 det The,results
R2389 T3676 T3677 nsubj results,indicate
R2390 T3678 T3679 mark that,loaded
R2391 T3679 T3677 ccomp loaded,indicate
R2392 T3680 T3681 det the,complex
R2393 T3681 T3679 nsubjpass complex,loaded
R2394 T3682 T3681 compound Mcm,complex
R2395 T3683 T3679 auxpass is,loaded
R2396 T3684 T3679 prep onto,loaded
R2397 T3685 T3686 compound bubble,DNA
R2398 T3686 T3684 pobj DNA,onto
R2399 T3687 T3679 prep through,loaded
R2400 T3688 T3687 pobj binding,through
R2401 T3689 T3688 prep to,binding
R2402 T3690 T3691 det both,strands
R2403 T3691 T3689 pobj strands,to
R2404 T3692 T3691 prep of,strands
R2405 T3693 T3694 det the,region
R2406 T3694 T3692 pobj region,of
R2407 T3695 T3696 amod single,stranded
R2408 T3696 T3694 amod stranded,region
R2409 T3697 T3696 punct -,stranded
R2410 T3698 T3677 punct .,indicate
R2411 T3700 T3701 amod Careful,examination
R2412 T3701 T3702 nsubj examination,indicated
R2413 T3703 T3701 prep of,examination
R2414 T3704 T3705 nmod Mcm4,footprints
R2415 T3705 T3703 pobj footprints,of
R2416 T3706 T3704 punct /,Mcm4
R2417 T3707 T3704 nummod 6,Mcm4
R2418 T3708 T3704 punct /,Mcm4
R2419 T3709 T3704 nummod 7,Mcm4
R2420 T3710 T3705 prep on,footprints
R2421 T3711 T3712 det a,bubble
R2422 T3712 T3710 pobj bubble,on
R2423 T3713 T3714 amod strong,protection
R2424 T3714 T3702 dobj protection,indicated
R2425 T3715 T3714 prep on,protection
R2426 T3716 T3717 det the,half
R2427 T3717 T3715 pobj half,on
R2428 T3718 T3717 nummod 5,half
R2429 T3719 T3718 punct ′,5
R2430 T3720 T3717 punct -,half
R2431 T3721 T3717 prep of,half
R2432 T3722 T3723 det the,strand
R2433 T3723 T3721 pobj strand,of
R2434 T3724 T3723 amod top,strand
R2435 T3725 T3714 cc and,protection
R2436 T3726 T3727 amod moderate,protection
R2437 T3727 T3714 conj protection,protection
R2438 T3728 T3727 prep on,protection
R2439 T3729 T3730 det the,half
R2440 T3730 T3728 pobj half,on
R2441 T3731 T3730 amod remaining,half
R2442 T3732 T3730 nummod 3,half
R2443 T3733 T3732 punct ′,3
R2444 T3734 T3730 punct -,half
R2445 T3735 T3728 punct ", ",on
R2446 T3736 T3737 advmod as,as
R2447 T3737 T3728 cc as,on
R2448 T3738 T3737 advmod well,as
R2449 T3739 T3728 conj on,on
R2450 T3740 T3741 amod several,segment
R2451 T3741 T3739 pobj segment,on
R2452 T3742 T3743 compound base,pair
R2453 T3743 T3741 compound pair,segment
R2454 T3744 T3743 punct -,pair
R2455 T3745 T3741 compound duplex,segment
R2456 T3746 T3741 amod adjacent,segment
R2457 T3747 T3746 prep to,adjacent
R2458 T3748 T3749 det the,point
R2459 T3749 T3747 pobj point,to
R2460 T3750 T3749 compound branch,point
R2461 T3751 T3752 punct (,1A
R2462 T3752 T3739 parataxis 1A,on
R2463 T3753 T3752 compound Figure,1A
R2464 T3754 T3752 cc and,1A
R2465 T3755 T3752 conj data,1A
R2466 T3756 T3757 neg not,shown
R2467 T3757 T3755 acl shown,data
R2468 T3758 T3752 punct ),1A
R2469 T3759 T3702 punct .,indicated
R2470 T3761 T3762 det A,pattern
R2471 T3762 T3764 nsubjpass pattern,observed
R2472 T3763 T3762 amod similar,pattern
R2473 T3765 T3762 prep of,pattern
R2474 T3766 T3765 pobj protection,of
R2475 T3767 T3764 auxpass was,observed
R2476 T3768 T3764 advmod also,observed
R2477 T3769 T3764 prep on,observed
R2478 T3770 T3771 det the,strand
R2479 T3771 T3769 pobj strand,on
R2480 T3772 T3771 amod bottom,strand
R2481 T3773 T3764 punct .,observed
R2482 T3775 T3776 nsubj This,suggests
R2483 T3777 T3778 mark that,bind
R2484 T3778 T3776 ccomp bind,suggests
R2485 T3779 T3778 nsubj Mcm4,bind
R2486 T3780 T3779 punct /,Mcm4
R2487 T3781 T3779 nummod 6,Mcm4
R2488 T3782 T3779 punct /,Mcm4
R2489 T3783 T3779 nummod 7,Mcm4
R2490 T3784 T3778 aux may,bind
R2491 T3785 T3778 prep to,bind
R2492 T3786 T3787 det a,substrate
R2493 T3787 T3785 pobj substrate,to
R2494 T3788 T3787 compound replication,substrate
R2495 T3789 T3787 compound bubble,substrate
R2496 T3790 T3787 prep with,substrate
R2497 T3791 T3792 det a,symmetry
R2498 T3792 T3790 pobj symmetry,with
R2499 T3793 T3792 nummod 2-fold,symmetry
R2500 T3794 T3778 prep as,bind
R2501 T3795 T3796 det a,hexamer
R2502 T3796 T3794 pobj hexamer,as
R2503 T3797 T3796 amod double,hexamer
R2504 T3798 T3799 punct (,1A
R2505 T3799 T3796 parataxis 1A,hexamer
R2506 T3800 T3799 compound Figure,1A
R2507 T3801 T3799 punct ", ",1A
R2508 T3802 T3799 advcl see,1A
R2509 T3803 T3804 det the,scheme
R2510 T3804 T3802 dobj scheme,see
R2511 T3805 T3804 amod lower,scheme
R2512 T3806 T3799 punct ),1A
R2513 T3807 T3778 punct ", ",bind
R2514 T3808 T3778 prep in,bind
R2515 T3809 T3810 det a,manner
R2516 T3810 T3808 pobj manner,in
R2517 T3811 T3810 amod similar,manner
R2518 T3812 T3811 prep to,similar
R2519 T3813 T3814 compound SV40,antigen
R2520 T3814 T3812 pobj antigen,to
R2521 T3815 T3814 compound T,antigen
R2522 T3816 T3814 punct -,antigen
R2523 T3817 T3818 punct (,21
R2524 T3818 T3778 parataxis 21,bind
R2525 T3819 T3818 punct ),21
R2526 T3820 T3776 punct .,suggests
R2527 T3822 T3823 compound Nuclease,protection
R2528 T3823 T3824 compound protection,assays
R2529 T3824 T3825 nsubjpass assays,conducted
R2530 T3826 T3825 auxpass were,conducted
R2531 T3827 T3825 advmod also,conducted
R2532 T3828 T3825 prep on,conducted
R2533 T3829 T3830 det a,structure
R2534 T3830 T3828 pobj structure,on
R2535 T3831 T3832 npadvmod T,tailed
R2536 T3832 T3830 amod tailed,structure
R2537 T3833 T3832 punct -,tailed
R2538 T3834 T3835 compound Y,fork
R2539 T3835 T3830 compound fork,structure
R2540 T3836 T3835 punct -,fork
R2541 T3837 T3838 punct (,1B
R2542 T3838 T3825 parataxis 1B,conducted
R2543 T3839 T3838 compound Figure,1B
R2544 T3840 T3838 punct ),1B
R2545 T3841 T3825 punct .,conducted
R2546 T3843 T3844 preconj Not,region
R2547 T3844 T3851 nsubjpass region,protected
R2548 T3845 T3843 advmod only,Not
R2549 T3846 T3844 det the,region
R2550 T3847 T3848 amod single,stranded
R2551 T3848 T3844 amod stranded,region
R2552 T3849 T3848 punct -,stranded
R2553 T3850 T3844 compound tail,region
R2554 T3852 T3844 cc but,region
R2555 T3853 T3852 advmod also,but
R2556 T3854 T3855 det the,DNA
R2557 T3855 T3844 conj DNA,region
R2558 T3856 T3857 nummod 7,bp
R2559 T3857 T3855 compound bp,DNA
R2560 T3858 T3855 compound duplex,DNA
R2561 T3859 T3855 amod adjacent,DNA
R2562 T3860 T3859 prep to,adjacent
R2563 T3861 T3862 det the,junction
R2564 T3862 T3860 pobj junction,to
R2565 T3863 T3862 nmod duplex,junction
R2566 T3864 T3863 punct -,duplex
R2567 T3865 T3863 prep to,duplex
R2568 T3866 T3865 punct -,to
R2569 T3867 T3868 amod single,strand
R2570 T3868 T3865 pobj strand,to
R2571 T3869 T3868 punct -,strand
R2572 T3870 T3851 auxpass were,protected
R2573 T3871 T3851 agent by,protected
R2574 T3872 T3873 compound Mcm,binding
R2575 T3873 T3871 pobj binding,by
R2576 T3874 T3873 prep from,binding
R2577 T3875 T3876 compound DNaseI,digestion
R2578 T3876 T3874 pobj digestion,from
R2579 T3877 T3851 punct .,protected
R2580 T3879 T3880 det These,results
R2581 T3880 T3881 nsubj results,indicate
R2582 T3882 T3883 mark that,interacts
R2583 T3883 T3881 advcl interacts,indicate
R2584 T3884 T3885 nmod Mcm4,protein
R2585 T3885 T3883 nsubj protein,interacts
R2586 T3886 T3884 punct /,Mcm4
R2587 T3887 T3884 nummod 6,Mcm4
R2588 T3888 T3884 punct /,Mcm4
R2589 T3889 T3884 nummod 7,Mcm4
R2590 T3890 T3883 advmod primarily,interacts
R2591 T3891 T3883 prep with,interacts
R2592 T3892 T3893 amod single,stranded
R2593 T3893 T3895 amod stranded,region
R2594 T3894 T3893 punct -,stranded
R2595 T3895 T3891 pobj region,with
R2596 T3896 T3895 compound DNA,region
R2597 T3897 T3883 cc and,interacts
R2598 T3898 T3899 mark that,spans
R2599 T3899 T3883 conj spans,interacts
R2600 T3900 T3901 det the,interaction
R2601 T3901 T3899 nsubj interaction,spans
R2602 T3902 T3899 advmod also,spans
R2603 T3903 T3904 det the,segments
R2604 T3904 T3899 dobj segments,spans
R2605 T3905 T3904 compound duplex,segments
R2606 T3906 T3904 prep near,segments
R2607 T3907 T3908 det the,branchpoint
R2608 T3908 T3906 pobj branchpoint,near
R2609 T3909 T3908 prep of,branchpoint
R2610 T3910 T3911 det the,fork
R2611 T3911 T3909 pobj fork,of
R2612 T3912 T3911 compound replication,fork
R2613 T3913 T3881 punct .,indicate
R2617 T4077 T4078 nsubj Formation,facilitates
R2618 T4079 T4077 prep of,Formation
R2619 T4080 T4081 amod double,hexameric
R2620 T4081 T4082 amod hexameric,complexes
R2621 T4082 T4079 pobj complexes,of
R2622 T4083 T4082 nmod Mcm4,complexes
R2623 T4084 T4083 punct /,Mcm4
R2624 T4085 T4083 nummod 6,Mcm4
R2625 T4086 T4083 punct /,Mcm4
R2626 T4087 T4083 nummod 7,Mcm4
R2627 T4088 T4089 compound helicase,actions
R2628 T4089 T4078 dobj actions,facilitates
R2629 T4090 T4078 prep on,facilitates
R2630 T4091 T4092 compound bubble,substrates
R2631 T4092 T4090 pobj substrates,on
R2632 T4094 T4095 det The,results
R2633 T4095 T4097 nsubj results,suggest
R2634 T4096 T4095 amod above,results
R2635 T4098 T4099 mark that,generates
R2636 T4099 T4097 ccomp generates,suggest
R2637 T4100 T4099 nsubj Mcm4,generates
R2638 T4101 T4100 punct /,Mcm4
R2639 T4102 T4100 nummod 6,Mcm4
R2640 T4103 T4100 punct /,Mcm4
R2641 T4104 T4100 nummod 7,Mcm4
R2642 T4105 T4106 det a,complex
R2643 T4106 T4099 dobj complex,generates
R2644 T4107 T4108 amod double,hexameric
R2645 T4108 T4106 amod hexameric,complex
R2646 T4109 T4099 prep on,generates
R2647 T4110 T4111 det a,bubble
R2648 T4111 T4109 pobj bubble,on
R2649 T4112 T4099 punct ", ",generates
R2650 T4113 T4114 det each,hexamer
R2651 T4114 T4115 dep hexamer,makes
R2652 T4115 T4099 ccomp makes,generates
R2653 T4116 T4114 prep of,hexamer
R2654 T4117 T4116 pobj which,of
R2655 T4118 T4119 amod symmetric,contact
R2656 T4119 T4115 dobj contact,makes
R2657 T4120 T4119 prep with,contact
R2658 T4121 T4122 det the,segment
R2659 T4122 T4120 pobj segment,with
R2660 T4123 T4124 npadvmod 5,proximal
R2661 T4124 T4122 amod proximal,segment
R2662 T4125 T4123 punct ′,5
R2663 T4126 T4124 punct -,proximal
R2664 T4127 T4122 amod central,segment
R2665 T4128 T4129 amod single,stranded
R2666 T4129 T4122 amod stranded,segment
R2667 T4130 T4129 punct -,stranded
R2668 T4131 T4097 punct .,suggest
R2669 T4133 T4134 nsubj This,predicts
R2670 T4135 T4136 mark that,needs
R2671 T4136 T4134 ccomp needs,predicts
R2672 T4137 T4138 det the,segment
R2673 T4138 T4136 nsubj segment,needs
R2674 T4139 T4140 amod single,stranded
R2675 T4140 T4138 amod stranded,segment
R2676 T4141 T4140 punct -,stranded
R2677 T4142 T4143 aux to,be
R2678 T4143 T4136 xcomp be,needs
R2679 T4144 T4143 prep of,be
R2680 T4145 T4146 det a,length
R2681 T4146 T4144 pobj length,of
R2682 T4147 T4146 amod sufficient,length
R2683 T4148 T4143 prep in,be
R2684 T4149 T4148 pobj order,in
R2685 T4150 T4151 aux to,accommodate
R2686 T4151 T4149 acl accommodate,order
R2687 T4152 T4153 det the,complex
R2688 T4153 T4151 dobj complex,accommodate
R2689 T4154 T4153 compound Mcm,complex
R2690 T4155 T4134 punct .,predicts
R2691 T4157 T4158 prep In,showed
R2692 T4159 T4157 pobj fact,In
R2693 T4160 T4158 punct ", ",showed
R2694 T4161 T4158 nsubj we,showed
R2695 T4162 T4158 advmod previously,showed
R2696 T4163 T4164 mark that,forms
R2697 T4164 T4158 ccomp forms,showed
R2698 T4165 T4166 det the,Mcm4
R2699 T4166 T4164 nsubj Mcm4,forms
R2700 T4167 T4166 punct /,Mcm4
R2701 T4168 T4166 nummod 6,Mcm4
R2702 T4169 T4166 punct /,Mcm4
R2703 T4170 T4166 nummod 7,Mcm4
R2704 T4171 T4164 advmod mainly,forms
R2705 T4172 T4173 det a,complex
R2706 T4173 T4164 dobj complex,forms
R2707 T4174 T4175 amod single,hexameric
R2708 T4175 T4173 amod hexameric,complex
R2709 T4176 T4173 prep on,complex
R2710 T4177 T4176 pobj bubble,on
R2711 T4178 T4177 punct -,bubble
R2712 T4179 T4177 nummod 20,bubble
R2713 T4180 T4177 punct (,bubble
R2714 T4181 T4182 det a,substrate
R2715 T4182 T4177 appos substrate,bubble
R2716 T4183 T4182 compound bubble,substrate
R2717 T4184 T4182 prep with,substrate
R2718 T4185 T4186 nummod 20,nt
R2719 T4186 T4187 npadvmod nt,long
R2720 T4187 T4188 amod long,segment
R2721 T4188 T4184 pobj segment,with
R2722 T4189 T4188 amod central,segment
R2723 T4190 T4191 amod single,stranded
R2724 T4191 T4188 amod stranded,segment
R2725 T4192 T4191 punct -,stranded
R2726 T4193 T4173 punct ),complex
R2727 T4194 T4173 cc and,complex
R2728 T4195 T4196 det a,complex
R2729 T4196 T4173 conj complex,complex
R2730 T4197 T4198 amod double,hexameric
R2731 T4198 T4196 amod hexameric,complex
R2732 T4199 T4196 prep on,complex
R2733 T4200 T4201 nmod bubble,DNA
R2734 T4201 T4199 pobj DNA,on
R2735 T4202 T4200 punct -,bubble
R2736 T4203 T4200 nummod 60,bubble
R2737 T4204 T4205 punct (,13
R2738 T4205 T4196 parataxis 13,complex
R2739 T4206 T4205 punct ),13
R2740 T4207 T4158 punct .,showed
R2741 T4209 T4210 prep In,constructed
R2742 T4211 T4209 pobj order,In
R2743 T4212 T4213 aux to,determine
R2744 T4213 T4211 acl determine,order
R2745 T4214 T4215 det the,requirement
R2746 T4215 T4213 dobj requirement,determine
R2747 T4216 T4215 amod minimum,requirement
R2748 T4217 T4215 prep for,requirement
R2749 T4218 T4219 amod double,hexamer
R2750 T4219 T4221 compound hexamer,formation
R2751 T4220 T4219 punct -,hexamer
R2752 T4221 T4217 pobj formation,for
R2753 T4222 T4210 punct ", ",constructed
R2754 T4223 T4224 det a,set
R2755 T4224 T4210 nsubjpass set,constructed
R2756 T4225 T4224 prep of,set
R2757 T4226 T4227 amod synthetic,substrates
R2758 T4227 T4225 pobj substrates,of
R2759 T4228 T4229 npadvmod bubble,like
R2760 T4229 T4227 amod like,substrates
R2761 T4230 T4229 punct -,like
R2762 T4231 T4227 punct (,substrates
R2763 T4232 T4233 compound Bub,T10
R2764 T4233 T4227 appos T10,substrates
R2765 T4234 T4233 punct -,T10
R2766 T4235 T4233 punct ", ",T10
R2767 T4236 T4237 compound Bub,T20
R2768 T4237 T4233 conj T20,T10
R2769 T4238 T4237 punct -,T20
R2770 T4239 T4237 punct ", ",T20
R2771 T4240 T4241 compound Bub,T30
R2772 T4241 T4237 conj T30,T20
R2773 T4242 T4241 punct -,T30
R2774 T4243 T4241 punct ", ",T30
R2775 T4244 T4245 compound Bub,T40
R2776 T4245 T4241 conj T40,T30
R2777 T4246 T4245 punct -,T40
R2778 T4247 T4245 cc and,T40
R2779 T4248 T4249 compound Bub,T50
R2780 T4249 T4245 conj T50,T40
R2781 T4250 T4249 punct -,T50
R2782 T4251 T4227 punct ),substrates
R2783 T4252 T4253 dep that,differed
R2784 T4253 T4227 relcl differed,substrates
R2785 T4254 T4253 prep in,differed
R2786 T4255 T4256 det the,length
R2787 T4256 T4254 pobj length,in
R2788 T4257 T4256 prep of,length
R2789 T4258 T4259 det the,segment
R2790 T4259 T4257 pobj segment,of
R2791 T4260 T4259 amod central,segment
R2792 T4261 T4259 amod unpaired,segment
R2793 T4262 T4210 auxpass were,constructed
R2794 T4263 T4210 punct ", ",constructed
R2795 T4264 T4210 cc and,constructed
R2796 T4265 T4266 det the,activities
R2797 T4266 T4270 nsubjpass activities,examined
R2798 T4267 T4266 nmod binding,activities
R2799 T4268 T4267 cc and,binding
R2800 T4269 T4267 conj helicase,binding
R2801 T4270 T4210 conj examined,constructed
R2802 T4271 T4266 prep of,activities
R2803 T4272 T4271 pobj Mcm4,of
R2804 T4273 T4272 punct /,Mcm4
R2805 T4274 T4272 nummod 6,Mcm4
R2806 T4275 T4272 punct /,Mcm4
R2807 T4276 T4272 nummod 7,Mcm4
R2808 T4277 T4266 prep on,activities
R2809 T4278 T4279 det these,substrates
R2810 T4279 T4277 pobj substrates,on
R2811 T4280 T4270 auxpass were,examined
R2812 T4281 T4210 punct .,constructed
R2813 T4283 T4284 nsubjpass Mcm4,incubated
R2814 T4285 T4283 punct /,Mcm4
R2815 T4286 T4283 nummod 6,Mcm4
R2816 T4287 T4283 punct /,Mcm4
R2817 T4288 T4283 nummod 7,Mcm4
R2818 T4289 T4284 auxpass was,incubated
R2819 T4290 T4284 prep with,incubated
R2820 T4291 T4292 det a,substrate
R2821 T4292 T4290 pobj substrate,with
R2822 T4293 T4292 amod radiolabeled,substrate
R2823 T4294 T4292 amod synthetic,substrate
R2824 T4295 T4292 compound bubble,substrate
R2825 T4296 T4284 prep in,incubated
R2826 T4297 T4298 det the,presence
R2827 T4298 T4296 pobj presence,in
R2828 T4299 T4298 prep of,presence
R2829 T4300 T4301 nummod 0.5,mM
R2830 T4301 T4302 nmod mM,S
R2831 T4302 T4299 pobj S,of
R2832 T4303 T4302 nmod ATP,S
R2833 T4304 T4302 punct -,S
R2834 T4305 T4302 punct γ,S
R2835 T4306 T4302 punct -,S
R2836 T4307 T4308 aux to,allow
R2837 T4308 T4284 advcl allow,incubated
R2838 T4309 T4310 compound complex,formation
R2839 T4310 T4308 dobj formation,allow
R2840 T4311 T4284 punct .,incubated
R2841 T4313 T4314 det A,half
R2842 T4314 T4315 nsubjpass half,analyzed
R2843 T4316 T4314 prep of,half
R2844 T4317 T4318 det these,mixtures
R2845 T4318 T4316 pobj mixtures,of
R2846 T4319 T4318 compound reaction,mixtures
R2847 T4320 T4315 auxpass were,analyzed
R2848 T4321 T4315 prep for,analyzed
R2849 T4322 T4323 compound DNA,binding
R2850 T4323 T4321 pobj binding,for
R2851 T4324 T4315 prep in,analyzed
R2852 T4325 T4326 compound gel,shift
R2853 T4326 T4327 compound shift,assays
R2854 T4327 T4324 pobj assays,in
R2855 T4328 T4329 punct (,2A
R2856 T4329 T4315 parataxis 2A,analyzed
R2857 T4330 T4329 compound Figure,2A
R2858 T4331 T4329 punct ),2A
R2859 T4332 T4315 punct ", ",analyzed
R2860 T4333 T4315 cc and,analyzed
R2861 T4334 T4335 det the,remainder
R2862 T4335 T4336 nsubjpass remainder,incubated
R2863 T4336 T4315 conj incubated,analyzed
R2864 T4337 T4336 auxpass was,incubated
R2865 T4338 T4336 advmod further,incubated
R2866 T4339 T4336 prep in,incubated
R2867 T4340 T4341 det the,presence
R2868 T4341 T4339 pobj presence,in
R2869 T4342 T4341 prep of,presence
R2870 T4343 T4344 nummod 10,mM
R2871 T4344 T4345 compound mM,ATP
R2872 T4345 T4342 pobj ATP,of
R2873 T4346 T4347 aux to,measure
R2874 T4347 T4336 advcl measure,incubated
R2875 T4348 T4349 compound DNA,helicase
R2876 T4349 T4350 compound helicase,activity
R2877 T4350 T4347 dobj activity,measure
R2878 T4351 T4352 punct (,2B
R2879 T4352 T4347 parataxis 2B,measure
R2880 T4353 T4352 compound Figure,2B
R2881 T4354 T4352 punct ),2B
R2882 T4355 T4336 punct .,incubated
R2883 T4357 T4358 nsubj Bub,generated
R2884 T4359 T4357 punct -,Bub
R2885 T4360 T4357 nummod 10,Bub
R2886 T4361 T4362 advmod only,level
R2887 T4362 T4358 dobj level,generated
R2888 T4363 T4362 det a,level
R2889 T4364 T4362 amod low,level
R2890 T4365 T4362 prep of,level
R2891 T4366 T4365 pobj complexes,of
R2892 T4367 T4366 prep with,complexes
R2893 T4368 T4367 pobj Mcm4,with
R2894 T4369 T4368 punct /,Mcm4
R2895 T4370 T4368 nummod 6,Mcm4
R2896 T4371 T4368 punct /,Mcm4
R2897 T4372 T4368 nummod 7,Mcm4
R2898 T4373 T4358 punct ", ",generated
R2899 T4374 T4358 cc and,generated
R2900 T4375 T4376 nsubj Bub,generated
R2901 T4376 T4358 conj generated,generated
R2902 T4377 T4375 punct -,Bub
R2903 T4378 T4375 nummod 20,Bub
R2904 T4379 T4376 advmod primarily,generated
R2905 T4380 T4381 det a,form
R2906 T4381 T4376 dobj form,generated
R2907 T4382 T4381 amod single,form
R2908 T4383 T4384 npadvmod mobility,shifted
R2909 T4384 T4381 amod shifted,form
R2910 T4385 T4384 punct -,shifted
R2911 T4386 T4381 punct ", ",form
R2912 T4387 T4388 dep which,contain
R2913 T4388 T4381 relcl contain,form
R2914 T4389 T4388 aux may,contain
R2915 T4390 T4391 det a,hexamer
R2916 T4391 T4388 dobj hexamer,contain
R2917 T4392 T4391 amod single,hexamer
R2918 T4393 T4391 prep of,hexamer
R2919 T4394 T4393 pobj Mcm4,of
R2920 T4395 T4394 punct /,Mcm4
R2921 T4396 T4394 nummod 6,Mcm4
R2922 T4397 T4394 punct /,Mcm4
R2923 T4398 T4394 nummod 7,Mcm4
R2924 T4399 T4376 punct .,generated
R2925 T4401 T4402 prep On,generated
R2926 T4403 T4401 pobj Bub,On
R2927 T4404 T4403 punct -,Bub
R2928 T4405 T4403 nummod 30,Bub
R2929 T4406 T4402 punct ", ",generated
R2930 T4407 T4408 amod significant,amount
R2931 T4408 T4402 nsubjpass amount,generated
R2932 T4409 T4408 prep of,amount
R2933 T4410 T4409 pobj complexes,of
R2934 T4411 T4410 acl containing,complexes
R2935 T4412 T4413 det a,hexamer
R2936 T4413 T4411 dobj hexamer,containing
R2937 T4414 T4413 amod double,hexamer
R2938 T4415 T4402 auxpass were,generated
R2939 T4416 T4402 prep in,generated
R2940 T4417 T4416 pobj addition,in
R2941 T4418 T4417 prep to,addition
R2942 T4419 T4418 pobj those,to
R2943 T4420 T4419 acl containing,those
R2944 T4421 T4422 det a,hexamer
R2945 T4422 T4420 dobj hexamer,containing
R2946 T4423 T4422 amod single,hexamer
R2947 T4424 T4425 punct (,2A
R2948 T4425 T4402 parataxis 2A,generated
R2949 T4426 T4425 compound Figure,2A
R2950 T4427 T4425 punct ),2A
R2951 T4428 T4429 punct (,21
R2952 T4429 T4402 parataxis 21,generated
R2953 T4430 T4429 nummod 13,21
R2954 T4431 T4429 punct ",",21
R2955 T4432 T4429 punct ),21
R2956 T4433 T4402 punct .,generated
R2957 T4435 T4436 det The,amounts
R2958 T4436 T4437 nsubj amounts,increased
R2959 T4438 T4436 prep of,amounts
R2960 T4439 T4440 amod double,hexamer
R2961 T4440 T4441 compound hexamer,complexes
R2962 T4441 T4438 pobj complexes,of
R2963 T4442 T4437 prep on,increased
R2964 T4443 T4444 compound Bub,T40
R2965 T4444 T4442 pobj T40,on
R2966 T4445 T4444 punct -,T40
R2967 T4446 T4444 cc and,T40
R2968 T4447 T4448 compound Bub,T50
R2969 T4448 T4444 conj T50,T40
R2970 T4449 T4448 punct -,T50
R2971 T4450 T4437 prep with,increased
R2972 T4451 T4452 amod concomitant,decrease
R2973 T4452 T4450 pobj decrease,with
R2974 T4453 T4452 prep of,decrease
R2975 T4454 T4455 amod single,hexamer
R2976 T4455 T4456 compound hexamer,complexes
R2977 T4456 T4453 pobj complexes,of
R2978 T4457 T4458 punct (,2A
R2979 T4458 T4437 parataxis 2A,increased
R2980 T4459 T4458 compound Figure,2A
R2981 T4460 T4458 punct ),2A
R2982 T4461 T4437 punct .,increased
R2983 T4463 T4464 det The,results
R2984 T4464 T4465 nsubj results,indicate
R2985 T4466 T4467 mark that,required
R2986 T4467 T4465 ccomp required,indicate
R2987 T4468 T4469 det a,segment
R2988 T4469 T4467 nsubjpass segment,required
R2989 T4470 T4471 amod single,stranded
R2990 T4471 T4469 amod stranded,segment
R2991 T4472 T4471 punct -,stranded
R2992 T4473 T4469 prep of,segment
R2993 T4474 T4475 advmod at,least
R2994 T4475 T4476 advmod least,40
R2995 T4476 T4477 nummod 40,nt
R2996 T4477 T4473 pobj nt,of
R2997 T4478 T4477 amod long,nt
R2998 T4479 T4467 auxpass is,required
R2999 T4480 T4467 prep for,required
R3000 T4481 T4482 amod efficient,loading
R3001 T4482 T4480 pobj loading,for
R3002 T4483 T4482 prep of,loading
R3003 T4484 T4485 det the,helicase
R3004 T4485 T4483 pobj helicase,of
R3005 T4486 T4487 amod double,hexameric
R3006 T4487 T4485 amod hexameric,helicase
R3007 T4488 T4487 punct -,hexameric
R3008 T4489 T4485 compound Mcm,helicase
R3009 T4490 T4482 prep on,loading
R3010 T4491 T4492 det a,substrate
R3011 T4492 T4490 pobj substrate,on
R3012 T4493 T4492 compound bubble,substrate
R3013 T4494 T4465 punct .,indicate
R3014 T4496 T4497 prep In,show
R3015 T4498 T4499 compound DNA,helicase
R3016 T4499 T4500 compound helicase,assays
R3017 T4500 T4496 pobj assays,In
R3018 T4501 T4497 punct ", ",show
R3019 T4502 T4503 nmod Mcm4,complex
R3020 T4503 T4497 nsubj complex,show
R3021 T4504 T4502 punct /,Mcm4
R3022 T4505 T4502 nummod 6,Mcm4
R3023 T4506 T4502 punct /,Mcm4
R3024 T4507 T4502 nummod 7,Mcm4
R3025 T4508 T4497 aux did,show
R3026 T4509 T4497 neg not,show
R3027 T4510 T4511 compound helicase,activity
R3028 T4511 T4497 dobj activity,show
R3029 T4512 T4497 prep on,show
R3030 T4513 T4514 preconj either,Bub
R3031 T4514 T4515 nmod Bub,substrate
R3032 T4515 T4512 pobj substrate,on
R3033 T4516 T4514 punct -,Bub
R3034 T4517 T4514 nummod 10,Bub
R3035 T4518 T4514 cc or,Bub
R3036 T4519 T4514 conj Bub,Bub
R3037 T4520 T4519 punct -,Bub
R3038 T4521 T4519 nummod 20,Bub
R3039 T4522 T4497 punct .,show
R3040 T4524 T4525 det The,efficiency
R3041 T4525 T4526 nsubj efficiency,improved
R3042 T4527 T4525 prep of,efficiency
R3043 T4528 T4527 pobj displacement,of
R3044 T4529 T4526 advmod slightly,improved
R3045 T4530 T4531 mark as,increased
R3046 T4531 T4526 advcl increased,improved
R3047 T4532 T4533 det the,length
R3048 T4533 T4531 nsubj length,increased
R3049 T4534 T4533 prep of,length
R3050 T4535 T4536 det the,segment
R3051 T4536 T4534 pobj segment,of
R3052 T4537 T4538 amod single,stranded
R3053 T4538 T4536 amod stranded,segment
R3054 T4539 T4538 punct -,stranded
R3055 T4540 T4541 quantmod up,30
R3056 T4541 T4543 nummod 30,nt
R3057 T4542 T4541 quantmod to,30
R3058 T4543 T4531 npadvmod nt,increased
R3059 T4544 T4526 punct .,improved
R3060 T4546 T4547 prep On,observed
R3061 T4548 T4549 compound Bub,T40
R3062 T4549 T4546 pobj T40,On
R3063 T4550 T4549 punct -,T40
R3064 T4551 T4549 cc and,T40
R3065 T4552 T4553 compound Bub,T50
R3066 T4553 T4549 conj T50,T40
R3067 T4554 T4553 punct -,T50
R3068 T4555 T4547 punct ", ",observed
R3069 T4556 T4547 prep on,observed
R3070 T4557 T4558 det the,hand
R3071 T4558 T4556 pobj hand,on
R3072 T4559 T4558 amod other,hand
R3073 T4560 T4547 punct ", ",observed
R3074 T4561 T4562 amod significant,displacement
R3075 T4562 T4547 nsubjpass displacement,observed
R3076 T4563 T4547 auxpass was,observed
R3077 T4564 T4547 punct ", ",observed
R3078 T4565 T4547 advcl indicating,observed
R3079 T4566 T4567 mark that,required
R3080 T4567 T4565 ccomp required,indicating
R3081 T4568 T4569 det a,segment
R3082 T4569 T4567 nsubjpass segment,required
R3083 T4570 T4571 amod single,stranded
R3084 T4571 T4569 amod stranded,segment
R3085 T4572 T4571 punct -,stranded
R3086 T4573 T4569 prep of,segment
R3087 T4574 T4575 advmod at,least
R3088 T4575 T4576 advmod least,40
R3089 T4576 T4577 nummod 40,nt
R3090 T4577 T4573 pobj nt,of
R3091 T4578 T4577 amod long,nt
R3092 T4579 T4567 auxpass is,required
R3093 T4580 T4567 prep for,required
R3094 T4581 T4582 amod efficient,actions
R3095 T4582 T4580 pobj actions,for
R3096 T4583 T4582 compound helicase,actions
R3097 T4584 T4582 prep on,actions
R3098 T4585 T4586 compound bubble,substrates
R3099 T4586 T4584 pobj substrates,on
R3100 T4587 T4588 punct (,2B
R3101 T4588 T4567 parataxis 2B,required
R3102 T4589 T4588 compound Figure,2B
R3103 T4590 T4588 punct ),2B
R3104 T4591 T4547 punct .,observed
R3105 T4593 T4594 advcl Taken,are
R3106 T4595 T4593 advmod together,Taken
R3107 T4596 T4594 punct ", ",are
R3108 T4597 T4598 det the,results
R3109 T4598 T4594 nsubj results,are
R3110 T4599 T4598 amod above,results
R3111 T4600 T4594 acomp consistent,are
R3112 T4601 T4600 prep with,consistent
R3113 T4602 T4603 det the,notion
R3114 T4603 T4601 pobj notion,with
R3115 T4604 T4605 mark that,unwinds
R3116 T4605 T4603 acl unwinds,notion
R3117 T4606 T4607 det the,complex
R3118 T4607 T4605 nsubj complex,unwinds
R3119 T4608 T4607 nmod Mcm4,complex
R3120 T4609 T4608 punct /,Mcm4
R3121 T4610 T4608 nummod 6,Mcm4
R3122 T4611 T4608 punct /,Mcm4
R3123 T4612 T4608 nummod 7,Mcm4
R3124 T4613 T4607 punct ", ",complex
R3125 T4614 T4607 acl loaded,complex
R3126 T4615 T4614 prep onto,loaded
R3127 T4616 T4615 pobj DNA,onto
R3128 T4617 T4614 prep as,loaded
R3129 T4618 T4619 det a,complex
R3130 T4619 T4617 pobj complex,as
R3131 T4620 T4621 amod double,hexameric
R3132 T4621 T4619 amod hexameric,complex
R3133 T4622 T4605 punct ", ",unwinds
R3134 T4623 T4605 advmod efficiently,unwinds
R3135 T4624 T4625 det the,region
R3136 T4625 T4605 dobj region,unwinds
R3137 T4626 T4625 compound duplex,region
R3138 T4627 T4625 prep of,region
R3139 T4628 T4629 det the,DNA
R3140 T4629 T4627 pobj DNA,of
R3141 T4630 T4629 compound substrate,DNA
R3142 T4631 T4594 punct .,are
R3145 T4737 T4738 det Both,strands
R3146 T4738 T4739 nsubjpass strands,required
R3147 T4740 T4738 prep of,strands
R3148 T4741 T4742 npadvmod thymine,rich
R3149 T4742 T4744 amod rich,segments
R3150 T4743 T4742 punct -,rich
R3151 T4744 T4740 pobj segments,of
R3152 T4745 T4746 amod single,stranded
R3153 T4746 T4744 amod stranded,segments
R3154 T4747 T4746 punct -,stranded
R3155 T4748 T4739 auxpass are,required
R3156 T4749 T4739 prep for,required
R3157 T4750 T4751 amod efficient,unwinding
R3158 T4751 T4749 pobj unwinding,for
R3159 T4752 T4751 prep of,unwinding
R3160 T4753 T4754 compound bubble,DNA
R3161 T4754 T4752 pobj DNA,of
R3162 T4755 T4751 prep by,unwinding
R3163 T4756 T4755 pobj Mcm4,by
R3164 T4757 T4756 punct /,Mcm4
R3165 T4758 T4756 nummod 6,Mcm4
R3166 T4759 T4756 punct /,Mcm4
R3167 T4760 T4756 nummod 7,Mcm4
R3168 T4762 T4763 amod Symmetric,binding
R3169 T4763 T4764 nsubj binding,suggests
R3170 T4765 T4763 prep of,binding
R3171 T4766 T4767 det the,hexamer
R3172 T4767 T4765 pobj hexamer,of
R3173 T4768 T4767 nmod Mcm4,hexamer
R3174 T4769 T4768 punct /,Mcm4
R3175 T4770 T4768 nummod 6,Mcm4
R3176 T4771 T4768 punct /,Mcm4
R3177 T4772 T4768 nummod 7,Mcm4
R3178 T4773 T4767 amod double,hexamer
R3179 T4774 T4763 prep to,binding
R3180 T4775 T4774 pobj bubble,to
R3181 T4776 T4777 mark that,catalyzes
R3182 T4777 T4764 ccomp catalyzes,suggests
R3183 T4778 T4779 det each,hexamer
R3184 T4779 T4777 nsubj hexamer,catalyzes
R3185 T4780 T4777 dobj unwinding,catalyzes
R3186 T4781 T4780 prep of,unwinding
R3187 T4782 T4781 pobj one,of
R3188 T4783 T4782 prep of,one
R3189 T4784 T4785 det the,segments
R3190 T4785 T4783 pobj segments,of
R3191 T4786 T4785 nummod two,segments
R3192 T4787 T4785 compound duplex,segments
R3193 T4788 T4764 punct .,suggests
R3194 T4790 T4791 nsubj We,asked
R3195 T4792 T4793 mark whether,required
R3196 T4793 T4791 ccomp required,asked
R3197 T4794 T4793 nsubjpass activation,required
R3198 T4795 T4794 prep of,activation
R3199 T4796 T4797 det both,hexamers
R3200 T4797 T4795 pobj hexamers,of
R3201 T4798 T4793 auxpass is,required
R3202 T4799 T4793 prep for,required
R3203 T4800 T4799 pobj unwinding,for
R3204 T4801 T4800 prep of,unwinding
R3205 T4802 T4803 det the,substrate
R3206 T4803 T4801 pobj substrate,of
R3207 T4804 T4803 compound bubble,substrate
R3208 T4805 T4791 punct .,asked
R3209 T4807 T4808 det The,substrate
R3210 T4808 T4811 nsubj substrate,contains
R3211 T4809 T4808 amod preferred,substrate
R3212 T4810 T4808 compound bubble,substrate
R3213 T4812 T4813 dep which,unwound
R3214 T4813 T4808 relcl unwound,substrate
R3215 T4814 T4813 auxpass is,unwound
R3216 T4815 T4813 advmod efficiently,unwound
R3217 T4816 T4813 agent by,unwound
R3218 T4817 T4816 pobj Mcm4,by
R3219 T4818 T4817 punct /,Mcm4
R3220 T4819 T4817 nummod 6,Mcm4
R3221 T4820 T4817 punct /,Mcm4
R3222 T4821 T4817 nummod 7,Mcm4
R3223 T4822 T4823 compound thymine,stretches
R3224 T4823 T4811 dobj stretches,contains
R3225 T4824 T4823 prep on,stretches
R3226 T4825 T4826 det both,strands
R3227 T4826 T4824 pobj strands,on
R3228 T4827 T4826 prep of,strands
R3229 T4828 T4829 det the,segment
R3230 T4829 T4827 pobj segment,of
R3231 T4830 T4831 amod single,stranded
R3232 T4831 T4829 amod stranded,segment
R3233 T4832 T4831 punct -,stranded
R3234 T4833 T4811 punct .,contains
R3235 T4835 T4836 nsubj We,constructed
R3236 T4837 T4838 det a,hetero-bubble
R3237 T4838 T4836 dobj hetero-bubble,constructed
R3238 T4839 T4838 punct (,hetero-bubble
R3239 T4840 T4841 compound Bub66,G
R3240 T4841 T4838 appos G,hetero-bubble
R3241 T4842 T4841 punct /,G
R3242 T4843 T4841 compound T,G
R3243 T4844 T4841 punct –,G
R3244 T4845 T4841 punct -,G
R3245 T4846 T4841 amod rich,G
R3246 T4847 T4838 punct ),hetero-bubble
R3247 T4848 T4849 prep in,is
R3248 T4849 T4838 relcl is,hetero-bubble
R3249 T4850 T4848 pobj which,in
R3250 T4851 T4852 nummod one,strand
R3251 T4852 T4849 nsubj strand,is
R3252 T4853 T4854 npadvmod T,rich
R3253 T4854 T4849 acomp rich,is
R3254 T4855 T4854 punct -,rich
R3255 T4856 T4857 punct (,same
R3256 T4857 T4854 parataxis same,rich
R3257 T4858 T4857 prep as,same
R3258 T4859 T4860 compound Bub66,T
R3259 T4860 T4858 pobj T,as
R3260 T4861 T4860 punct /,T
R3261 T4862 T4860 punct -,T
R3262 T4863 T4860 amod rich,T
R3263 T4864 T4857 punct ),same
R3264 T4865 T4849 cc and,is
R3265 T4866 T4867 det the,strand
R3266 T4867 T4869 nsubj strand,is
R3267 T4868 T4867 amod other,strand
R3268 T4869 T4849 conj is,is
R3269 T4870 T4871 npadvmod G,rich
R3270 T4871 T4869 acomp rich,is
R3271 T4872 T4871 punct -,rich
R3272 T4873 T4874 punct (,same
R3273 T4874 T4871 parataxis same,rich
R3274 T4875 T4874 prep as,same
R3275 T4876 T4877 compound Bub66,G
R3276 T4877 T4875 pobj G,as
R3277 T4878 T4877 punct /,G
R3278 T4879 T4877 punct -,G
R3279 T4880 T4877 amod rich,G
R3280 T4881 T4874 punct ),same
R3281 T4882 T4883 punct (,13
R3282 T4883 T4871 parataxis 13,rich
R3283 T4884 T4883 punct ),13
R3284 T4885 T4836 punct ", ",constructed
R3285 T4886 T4836 cc and,constructed
R3286 T4887 T4888 compound helicase,assays
R3287 T4888 T4889 nsubjpass assays,conducted
R3288 T4889 T4836 conj conducted,constructed
R3289 T4890 T4889 auxpass were,conducted
R3290 T4891 T4889 prep with,conducted
R3291 T4892 T4893 amod increasing,amount
R3292 T4893 T4891 pobj amount,with
R3293 T4894 T4893 prep of,amount
R3294 T4895 T4894 pobj Mcm4,of
R3295 T4896 T4895 punct /,Mcm4
R3296 T4897 T4895 nummod 6,Mcm4
R3297 T4898 T4895 punct /,Mcm4
R3298 T4899 T4895 nummod 7,Mcm4
R3299 T4900 T4889 punct .,conducted
R3300 T4902 T4903 advmod Only,unwinding
R3301 T4903 T4905 nsubjpass unwinding,detected
R3302 T4904 T4903 amod weak,unwinding
R3303 T4906 T4905 auxpass was,detected
R3304 T4907 T4905 prep on,detected
R3305 T4908 T4909 det this,substrate
R3306 T4909 T4907 pobj substrate,on
R3307 T4910 T4905 prep compared,detected
R3308 T4911 T4910 prep to,compared
R3309 T4912 T4913 compound Bub66,T
R3310 T4913 T4911 pobj T,to
R3311 T4914 T4913 punct /,T
R3312 T4915 T4913 punct -,T
R3313 T4916 T4913 amod rich,T
R3314 T4917 T4918 punct (,3A
R3315 T4918 T4905 parataxis 3A,detected
R3316 T4919 T4918 compound Figure,3A
R3317 T4920 T4918 punct ),3A
R3318 T4921 T4905 punct .,detected
R3319 T4923 T4924 mark Since,bind
R3320 T4924 T4931 advcl bind,is
R3321 T4925 T4924 nsubj Mcm4,bind
R3322 T4926 T4925 punct /,Mcm4
R3323 T4927 T4925 nummod 6,Mcm4
R3324 T4928 T4925 punct /,Mcm4
R3325 T4929 T4925 nummod 7,Mcm4
R3326 T4930 T4924 aux can,bind
R3327 T4932 T4924 prep to,bind
R3328 T4933 T4934 compound Bub66,G
R3329 T4934 T4932 pobj G,to
R3330 T4935 T4934 punct /,G
R3331 T4936 T4934 compound T,G
R3332 T4937 T4934 punct –,G
R3333 T4938 T4934 punct -,G
R3334 T4939 T4934 amod rich,G
R3335 T4940 T4924 cc and,bind
R3336 T4941 T4924 conj forms,bind
R3337 T4942 T4943 det a,complex
R3338 T4943 T4941 dobj complex,forms
R3339 T4944 T4945 amod double,hexameric
R3340 T4945 T4943 amod hexameric,complex
R3341 T4946 T4947 punct (,shown
R3342 T4947 T4941 parataxis shown,forms
R3343 T4948 T4947 nsubj data,shown
R3344 T4949 T4947 neg not,shown
R3345 T4950 T4947 punct ),shown
R3346 T4951 T4931 punct ", ",is
R3347 T4952 T4953 det the,unwinding
R3348 T4953 T4931 nsubj unwinding,is
R3349 T4954 T4953 amod defective,unwinding
R3350 T4955 T4931 neg not,is
R3351 T4956 T4931 prep due,is
R3352 T4957 T4956 pcomp to,due
R3353 T4958 T4959 amod inefficient,loading
R3354 T4959 T4956 pobj loading,due
R3355 T4960 T4959 prep of,loading
R3356 T4961 T4962 det the,helicase
R3357 T4962 T4960 pobj helicase,of
R3358 T4963 T4959 prep onto,loading
R3359 T4964 T4965 det the,substrate
R3360 T4965 T4963 pobj substrate,onto
R3361 T4966 T4931 punct .,is
R3362 T4968 T4969 mark If,dissociates
R3363 T4969 T4979 advcl dissociates,result
R3364 T4970 T4971 nummod one,hexamer
R3365 T4971 T4969 nsubj hexamer,dissociates
R3366 T4972 T4971 acl interacting,hexamer
R3367 T4973 T4972 prep with,interacting
R3368 T4974 T4975 det the,strand
R3369 T4975 T4973 pobj strand,with
R3370 T4976 T4977 npadvmod thymine,rich
R3371 T4977 T4975 amod rich,strand
R3372 T4978 T4977 punct -,rich
R3373 T4980 T4969 prep from,dissociates
R3374 T4981 T4982 det the,hexamer
R3375 T4982 T4980 pobj hexamer,from
R3376 T4983 T4982 amod other,hexamer
R3377 T4984 T4969 cc and,dissociates
R3378 T4985 T4969 conj displaces,dissociates
R3379 T4986 T4987 advmod only,one
R3380 T4987 T4985 dobj one,displaces
R3381 T4988 T4987 prep of,one
R3382 T4989 T4990 det the,segments
R3383 T4990 T4988 pobj segments,of
R3384 T4991 T4990 compound duplex,segments
R3385 T4992 T4979 punct ", ",result
R3386 T4993 T4979 advmod then,result
R3387 T4994 T4979 nsubj it,result
R3388 T4995 T4979 aux would,result
R3389 T4996 T4979 prep in,result
R3390 T4997 T4996 pobj generation,in
R3391 T4998 T4997 prep of,generation
R3392 T4999 T5000 compound Y,fork
R3393 T5000 T5002 compound fork,structures
R3394 T5001 T5000 punct -,fork
R3395 T5002 T4998 pobj structures,of
R3396 T5003 T5004 dep which,displaced
R3397 T5004 T5002 relcl displaced,structures
R3398 T5005 T5004 aux could,displaced
R3399 T5006 T5004 neg not,displaced
R3400 T5007 T5004 auxpass be,displaced
R3401 T5008 T5004 advmod further,displaced
R3402 T5009 T5004 prep due,displaced
R3403 T5010 T5009 pcomp to,due
R3404 T5011 T5012 det the,presence
R3405 T5012 T5009 pobj presence,due
R3406 T5013 T5012 prep of,presence
R3407 T5014 T5015 npadvmod G,rich
R3408 T5015 T5017 amod rich,tail
R3409 T5016 T5015 punct -,rich
R3410 T5017 T5013 pobj tail,of
R3411 T5018 T5017 nummod 3,tail
R3412 T5019 T5018 punct ′,3
R3413 T5020 T5017 punct -,tail
R3414 T5021 T5004 cc and,displaced
R3415 T5022 T5023 aux would,appear
R3416 T5023 T5004 conj appear,displaced
R3417 T5024 T5023 prep on,appear
R3418 T5025 T5026 det the,gel
R3419 T5026 T5024 pobj gel,on
R3420 T5027 T4979 punct .,result
R3421 T5029 T5030 advmod However,detect
R3422 T5031 T5030 punct ", ",detect
R3423 T5032 T5030 nsubj we,detect
R3424 T5033 T5030 aux did,detect
R3425 T5034 T5030 neg not,detect
R3426 T5035 T5036 amod such,intermediates
R3427 T5036 T5030 dobj intermediates,detect
R3428 T5037 T5030 prep during,detect
R3429 T5038 T5039 det the,course
R3430 T5039 T5037 pobj course,during
R3431 T5040 T5039 prep of,course
R3432 T5041 T5042 det the,experiment
R3433 T5042 T5040 pobj experiment,of
R3434 T5043 T5044 punct (,3B
R3435 T5044 T5030 parataxis 3B,detect
R3436 T5045 T5044 compound Figure,3B
R3437 T5046 T5044 punct ),3B
R3438 T5047 T5030 punct ", ",detect
R3439 T5048 T5030 advcl suggesting,detect
R3440 T5049 T5050 mark that,displaced
R3441 T5050 T5048 ccomp displaced,suggesting
R3442 T5051 T5050 nsubjpass bubble,displaced
R3443 T5052 T5050 aux can,displaced
R3444 T5053 T5050 auxpass be,displaced
R3445 T5054 T5050 advmod efficiently,displaced
R3446 T5055 T5056 advmod only,activated
R3447 T5056 T5050 advcl activated,displaced
R3448 T5057 T5056 advmod when,activated
R3449 T5058 T5059 nummod two,molecules
R3450 T5059 T5056 nsubjpass molecules,activated
R3451 T5060 T5059 prep of,molecules
R3452 T5061 T5062 det the,hexamers
R3453 T5062 T5060 pobj hexamers,of
R3454 T5063 T5062 nmod Mcm4,hexamers
R3455 T5064 T5063 punct /,Mcm4
R3456 T5065 T5063 nummod 6,Mcm4
R3457 T5066 T5063 punct /,Mcm4
R3458 T5067 T5063 nummod 7,Mcm4
R3459 T5068 T5056 auxpass are,activated
R3460 T5069 T5056 advmod simultaneously,activated
R3461 T5070 T5030 punct .,detect
R3464 T5260 T5261 nmod Binding,actions
R3465 T5262 T5260 cc and,Binding
R3466 T5263 T5260 conj helicase,Binding
R3467 T5264 T5261 prep of,actions
R3468 T5265 T5264 pobj Mcm4,of
R3469 T5266 T5265 punct /,Mcm4
R3470 T5267 T5265 nummod 6,Mcm4
R3471 T5268 T5265 punct /,Mcm4
R3472 T5269 T5265 nummod 7,Mcm4
R3473 T5270 T5261 prep on,actions
R3474 T5271 T5272 amod forked,substrates
R3475 T5272 T5270 pobj substrates,on
R3476 T5273 T5271 cc and,forked
R3477 T5274 T5275 nummod 3,extension
R3478 T5275 T5271 conj extension,forked
R3479 T5276 T5274 punct ′,3
R3480 T5277 T5274 punct -,3
R3481 T5278 T5274 cc or,3
R3482 T5279 T5274 conj 5,3
R3483 T5280 T5279 punct ′,5
R3484 T5281 T5275 punct -,extension
R3485 T5283 T5284 prep In,constructed
R3486 T5285 T5283 pobj order,In
R3487 T5286 T5287 aux to,examine
R3488 T5287 T5285 acl examine,order
R3489 T5288 T5289 advmod more,precisely
R3490 T5289 T5287 advmod precisely,examine
R3491 T5290 T5291 det the,interaction
R3492 T5291 T5287 dobj interaction,examine
R3493 T5292 T5291 cc and,interaction
R3494 T5293 T5294 compound helicase,actions
R3495 T5294 T5291 conj actions,interaction
R3496 T5295 T5291 prep with,interaction
R3497 T5296 T5297 amod forked,substrates
R3498 T5297 T5295 pobj substrates,with
R3499 T5298 T5284 punct ", ",constructed
R3500 T5299 T5300 compound Y,fork
R3501 T5300 T5302 compound fork,substrates
R3502 T5301 T5300 punct -,fork
R3503 T5302 T5284 nsubjpass substrates,constructed
R3504 T5303 T5302 acl containing,substrates
R3505 T5304 T5305 det a,strand
R3506 T5305 T5303 dobj strand,containing
R3507 T5306 T5305 amod nascent,strand
R3508 T5307 T5305 amod leading,strand
R3509 T5308 T5305 punct (,strand
R3510 T5309 T5310 compound A,fork
R3511 T5310 T5305 appos fork,strand
R3512 T5311 T5310 punct -,fork
R3513 T5312 T5310 punct [,fork
R3514 T5313 T5310 nummod 3,fork
R3515 T5314 T5310 punct ′,fork
R3516 T5315 T5305 punct ],strand
R3517 T5316 T5305 punct ),strand
R3518 T5317 T5305 punct ", ",strand
R3519 T5318 T5319 amod nascent,strand
R3520 T5319 T5305 appos strand,strand
R3521 T5320 T5319 amod lagging,strand
R3522 T5321 T5319 punct (,strand
R3523 T5322 T5323 compound A,fork
R3524 T5323 T5319 appos fork,strand
R3525 T5324 T5323 punct -,fork
R3526 T5325 T5323 punct [,fork
R3527 T5326 T5323 nummod 5,fork
R3528 T5327 T5323 punct ′,fork
R3529 T5328 T5305 punct ],strand
R3530 T5329 T5305 punct ),strand
R3531 T5330 T5305 punct ", ",strand
R3532 T5331 T5305 cc or,strand
R3533 T5332 T5305 conj both,strand
R3534 T5333 T5332 prep of,both
R3535 T5334 T5333 pobj them,of
R3536 T5335 T5332 punct (,both
R3537 T5336 T5337 nmod A,fork
R3538 T5337 T5339 nmod fork,structures
R3539 T5338 T5337 punct -,fork
R3540 T5339 T5332 appos structures,both
R3541 T5340 T5337 punct [,fork
R3542 T5341 T5337 appos 3,fork
R3543 T5342 T5341 punct ′,3
R3544 T5343 T5341 punct ",",3
R3545 T5344 T5341 appos 5,3
R3546 T5345 T5344 punct ′,5
R3547 T5346 T5337 punct ],fork
R3548 T5347 T5337 punct ),fork
R3549 T5348 T5337 punct ", ",fork
R3550 T5349 T5350 advmod as,as
R3551 T5350 T5337 cc as,fork
R3552 T5351 T5350 advmod well,as
R3553 T5352 T5353 nummod 5,extension
R3554 T5353 T5337 conj extension,fork
R3555 T5354 T5352 punct ′,5
R3556 T5355 T5353 punct -,extension
R3557 T5356 T5353 cc or,extension
R3558 T5357 T5358 nummod 3,extension
R3559 T5358 T5353 conj extension,extension
R3560 T5359 T5357 punct ′,3
R3561 T5360 T5358 punct -,extension
R3562 T5361 T5284 auxpass were,constructed
R3563 T5362 T5284 punct .,constructed
R3564 T5364 T5365 nsubj Mcm4,bound
R3565 T5366 T5364 punct /,Mcm4
R3566 T5367 T5364 nummod 6,Mcm4
R3567 T5368 T5364 punct /,Mcm4
R3568 T5369 T5364 nummod 7,Mcm4
R3569 T5370 T5365 prep to,bound
R3570 T5371 T5372 compound A,fork
R3571 T5372 T5370 pobj fork,to
R3572 T5373 T5372 punct -,fork
R3573 T5374 T5372 punct [,fork
R3574 T5375 T5372 nummod 3,fork
R3575 T5376 T5372 punct ′,fork
R3576 T5377 T5372 punct ],fork
R3577 T5378 T5372 cc or,fork
R3578 T5379 T5380 compound A,fork
R3579 T5380 T5372 conj fork,fork
R3580 T5381 T5380 punct -,fork
R3581 T5382 T5380 punct [,fork
R3582 T5383 T5380 nummod 5,fork
R3583 T5384 T5380 punct ′,fork
R3584 T5385 T5365 punct ],bound
R3585 T5386 T5365 prep with,bound
R3586 T5387 T5386 pobj affinity,with
R3587 T5388 T5387 amod similar,affinity
R3588 T5389 T5388 prep to,similar
R3589 T5390 T5389 pobj that,to
R3590 T5391 T5390 prep of,that
R3591 T5392 T5393 det a,fork
R3592 T5393 T5391 pobj fork,of
R3593 T5394 T5393 amod simple,fork
R3594 T5395 T5393 compound Y,fork
R3595 T5396 T5393 punct -,fork
R3596 T5397 T5398 punct (,4A
R3597 T5398 T5365 parataxis 4A,bound
R3598 T5399 T5398 compound Figure,4A
R3599 T5400 T5398 cc and,4A
R3600 T5401 T5402 nsubj data,shown
R3601 T5402 T5398 conj shown,4A
R3602 T5403 T5402 neg not,shown
R3603 T5404 T5398 punct ),4A
R3604 T5405 T5365 punct .,bound
R3605 T5407 T5408 prep In,bound
R3606 T5409 T5407 pobj contrast,In
R3607 T5410 T5408 punct ", ",bound
R3608 T5411 T5412 compound PriA,helicase
R3609 T5412 T5408 nsubj helicase,bound
R3610 T5413 T5412 punct ", ",helicase
R3611 T5414 T5412 acl used,helicase
R3612 T5415 T5414 prep as,used
R3613 T5416 T5417 det a,control
R3614 T5417 T5415 pobj control,as
R3615 T5418 T5408 punct ", ",bound
R3616 T5419 T5408 prep to,bound
R3617 T5420 T5421 compound A,fork
R3618 T5421 T5419 pobj fork,to
R3619 T5422 T5421 punct -,fork
R3620 T5423 T5421 punct [,fork
R3621 T5424 T5421 nummod 3,fork
R3622 T5425 T5421 punct ′,fork
R3623 T5426 T5408 punct ],bound
R3624 T5427 T5428 advmod more,efficiently
R3625 T5428 T5408 advmod efficiently,bound
R3626 T5429 T5428 prep than,efficiently
R3627 T5430 T5429 prep to,than
R3628 T5431 T5432 compound A,fork
R3629 T5432 T5430 pobj fork,to
R3630 T5433 T5432 punct -,fork
R3631 T5434 T5432 punct [,fork
R3632 T5435 T5432 nummod 5,fork
R3633 T5436 T5432 punct ′,fork
R3634 T5437 T5408 punct ],bound
R3635 T5438 T5408 punct ", ",bound
R3636 T5439 T5440 mark as,reported
R3637 T5440 T5408 advcl reported,bound
R3638 T5441 T5440 advmod previously,reported
R3639 T5442 T5443 punct (,25
R3640 T5443 T5440 parataxis 25,reported
R3641 T5444 T5443 nummod 23,25
R3642 T5445 T5443 punct ",",25
R3643 T5446 T5443 punct ),25
R3644 T5447 T5408 punct .,bound
R3645 T5449 T5450 nsubj Mcm4,bound
R3646 T5451 T5449 punct /,Mcm4
R3647 T5452 T5449 nummod 6,Mcm4
R3648 T5453 T5449 punct /,Mcm4
R3649 T5454 T5449 nummod 7,Mcm4
R3650 T5455 T5450 advmod also,bound
R3651 T5456 T5450 prep to,bound
R3652 T5457 T5458 nummod 5,extension
R3653 T5458 T5456 pobj extension,to
R3654 T5459 T5457 punct ′,5
R3655 T5460 T5458 punct -,extension
R3656 T5461 T5458 cc and,extension
R3657 T5462 T5463 nummod 3,extension
R3658 T5463 T5458 conj extension,extension
R3659 T5464 T5462 punct ′,3
R3660 T5465 T5463 punct -,extension
R3661 T5466 T5450 punct ", ",bound
R3662 T5467 T5468 dep albeit,with
R3663 T5468 T5450 prep with,bound
R3664 T5469 T5470 advmod slightly,reduced
R3665 T5470 T5471 amod reduced,affinity
R3666 T5471 T5468 pobj affinity,with
R3667 T5472 T5471 prep compared,affinity
R3668 T5473 T5472 prep to,compared
R3669 T5474 T5475 compound A,fork
R3670 T5475 T5473 pobj fork,to
R3671 T5476 T5475 punct -,fork
R3672 T5477 T5475 punct [,fork
R3673 T5478 T5475 nummod 3,fork
R3674 T5479 T5475 punct ′,fork
R3675 T5480 T5475 punct ],fork
R3676 T5481 T5475 cc and,fork
R3677 T5482 T5483 compound A,fork
R3678 T5483 T5475 conj fork,fork
R3679 T5484 T5483 punct -,fork
R3680 T5485 T5483 punct [,fork
R3681 T5486 T5483 nummod 5,fork
R3682 T5487 T5483 punct ′,fork
R3683 T5488 T5450 punct ],bound
R3684 T5489 T5490 punct (,4A
R3685 T5490 T5450 parataxis 4A,bound
R3686 T5491 T5490 compound Figure,4A
R3687 T5492 T5490 punct ),4A
R3688 T5493 T5450 punct .,bound
R3689 T5495 T5496 nsubj Mcm4,bound
R3690 T5497 T5495 punct /,Mcm4
R3691 T5498 T5495 nummod 6,Mcm4
R3692 T5499 T5495 punct /,Mcm4
R3693 T5500 T5495 nummod 7,Mcm4
R3694 T5501 T5496 prep to,bound
R3695 T5502 T5503 compound A,fork
R3696 T5503 T5501 pobj fork,to
R3697 T5504 T5503 punct -,fork
R3698 T5505 T5503 punct [,fork
R3699 T5506 T5503 appos 3,fork
R3700 T5507 T5506 punct ′,3
R3701 T5508 T5506 punct ",",3
R3702 T5509 T5506 appos 5,3
R3703 T5510 T5509 punct ′,5
R3704 T5511 T5496 punct ],bound
R3705 T5512 T5496 prep with,bound
R3706 T5513 T5514 advmod much,lower
R3707 T5514 T5515 amod lower,affinity
R3708 T5515 T5512 pobj affinity,with
R3709 T5516 T5496 punct ", ",bound
R3710 T5517 T5496 cc and,bound
R3711 T5518 T5519 det the,complex
R3712 T5519 T5520 nsubj complex,gave
R3713 T5520 T5496 conj gave,bound
R3714 T5521 T5520 dobj rise,gave
R3715 T5522 T5520 prep to,gave
R3716 T5523 T5524 det a,band
R3717 T5524 T5522 pobj band,to
R3718 T5525 T5524 amod single,band
R3719 T5526 T5520 punct .,gave
R3720 T5528 T5529 det These,findings
R3721 T5529 T5530 nsubj findings,indicate
R3722 T5531 T5532 mark that,loaded
R3723 T5532 T5530 ccomp loaded,indicate
R3724 T5533 T5534 det the,complex
R3725 T5534 T5532 nsubjpass complex,loaded
R3726 T5535 T5534 nmod Mcm4,complex
R3727 T5536 T5535 punct /,Mcm4
R3728 T5537 T5535 nummod 6,Mcm4
R3729 T5538 T5535 punct /,Mcm4
R3730 T5539 T5535 nummod 7,Mcm4
R3731 T5540 T5532 auxpass is,loaded
R3732 T5541 T5532 prep onto,loaded
R3733 T5542 T5541 pobj DNA,onto
R3734 T5543 T5532 advmod preferentially,loaded
R3735 T5544 T5543 cc and,preferentially
R3736 T5545 T5543 conj efficiently,preferentially
R3737 T5546 T5532 prep through,loaded
R3738 T5547 T5548 amod single,stranded
R3739 T5548 T5550 amod stranded,region
R3740 T5549 T5548 punct -,stranded
R3741 T5550 T5546 pobj region,through
R3742 T5551 T5532 punct ", ",loaded
R3743 T5552 T5532 advmod regardless,loaded
R3744 T5553 T5552 prep of,regardless
R3745 T5554 T5555 det the,presence
R3746 T5555 T5553 pobj presence,of
R3747 T5556 T5555 prep of,presence
R3748 T5557 T5558 nummod 3,terminus
R3749 T5558 T5556 pobj terminus,of
R3750 T5559 T5557 punct ′,3
R3751 T5560 T5557 punct -,3
R3752 T5561 T5557 cc or,3
R3753 T5562 T5557 conj 5,3
R3754 T5563 T5562 punct ′,5
R3755 T5564 T5558 punct -,terminus
R3756 T5565 T5530 punct .,indicate
R3757 T5567 T5568 prep In,unwound
R3758 T5569 T5567 pobj contrast,In
R3759 T5570 T5568 punct ", ",unwound
R3760 T5571 T5572 advmod only,substrate
R3761 T5572 T5568 nsubjpass substrate,unwound
R3762 T5573 T5572 det the,substrate
R3763 T5574 T5572 acl containing,substrate
R3764 T5575 T5576 det a,tail
R3765 T5576 T5574 dobj tail,containing
R3766 T5577 T5576 nummod 3,tail
R3767 T5578 T5577 punct ′,3
R3768 T5579 T5580 amod single,stranded
R3769 T5580 T5576 amod stranded,tail
R3770 T5581 T5580 punct -,stranded
R3771 T5582 T5576 compound DNA,tail
R3772 T5583 T5584 punct (,fork
R3773 T5584 T5572 appos fork,substrate
R3774 T5585 T5584 compound A,fork
R3775 T5586 T5584 punct -,fork
R3776 T5587 T5584 punct [,fork
R3777 T5588 T5584 nummod 5,fork
R3778 T5589 T5584 punct ′,fork
R3779 T5590 T5568 punct ],unwound
R3780 T5591 T5568 punct ),unwound
R3781 T5592 T5568 auxpass was,unwound
R3782 T5593 T5568 advmod efficiently,unwound
R3783 T5594 T5568 cc and,unwound
R3784 T5595 T5596 compound A,fork
R3785 T5596 T5598 nsubjpass fork,unwound
R3786 T5597 T5596 punct -,fork
R3788 T5599 T5596 punct [,fork
R3789 T5600 T5596 nummod 3,fork
R3790 T5601 T5596 punct ′,fork
R3791 T5602 T5596 punct ],fork
R3792 T5603 T5596 cc or,fork
R3793 T5604 T5605 compound A,fork
R3794 T5605 T5596 conj fork,fork
R3795 T5606 T5605 punct -,fork
R3796 T5607 T5605 punct [,fork
R3797 T5608 T5605 appos 3,fork
R3798 T5609 T5608 punct ′,3
R3799 T5610 T5608 punct ",",3
R3800 T5611 T5608 appos 5,3
R3801 T5612 T5611 punct ′,5
R3802 T5613 T5598 punct ],unwound
R3803 T5614 T5598 punct ", ",unwound
R3804 T5615 T5598 auxpass was,unwound
R3805 T5616 T5598 neg not,unwound
R3806 T5617 T5598 agent by,unwound
R3807 T5618 T5617 pobj Mcm4,by
R3808 T5619 T5618 punct /,Mcm4
R3809 T5620 T5618 nummod 6,Mcm4
R3810 T5621 T5618 punct /,Mcm4
R3811 T5622 T5618 nummod 7,Mcm4
R3812 T5623 T5624 punct (,4B
R3813 T5624 T5598 parataxis 4B,unwound
R3814 T5625 T5624 compound Figure,4B
R3815 T5626 T5624 punct ),4B
R3816 T5627 T5568 punct .,unwound
R3817 T5629 T5630 nsubjpass Absence,expected
R3818 T5631 T5629 prep of,Absence
R3819 T5632 T5633 compound helicase,actions
R3820 T5633 T5631 pobj actions,of
R3821 T5634 T5629 prep on,Absence
R3822 T5635 T5636 compound A,fork
R3823 T5636 T5634 pobj fork,on
R3824 T5637 T5636 punct -,fork
R3825 T5638 T5636 punct [,fork
R3826 T5639 T5636 appos 3,fork
R3827 T5640 T5639 punct ′,3
R3828 T5641 T5639 punct ",",3
R3829 T5642 T5639 appos 5,3
R3830 T5643 T5642 punct ′,5
R3831 T5644 T5636 punct ],fork
R3832 T5645 T5636 acl composed,fork
R3833 T5646 T5647 advmod only,of
R3834 T5647 T5645 prep of,composed
R3835 T5648 T5649 compound duplex,regions
R3836 T5649 T5647 pobj regions,of
R3837 T5650 T5630 auxpass is,expected
R3838 T5651 T5652 mark since,is
R3839 T5652 T5630 advcl is,expected
R3840 T5653 T5654 amod double,stranded
R3841 T5654 T5656 amod stranded,DNA
R3842 T5655 T5654 punct -,stranded
R3843 T5656 T5652 nsubj DNA,is
R3844 T5657 T5652 neg not,is
R3845 T5658 T5652 acomp able,is
R3846 T5659 T5660 aux to,activate
R3847 T5660 T5658 xcomp activate,able
R3848 T5661 T5662 det the,activity
R3849 T5662 T5660 dobj activity,activate
R3850 T5663 T5662 compound ATPase,activity
R3851 T5664 T5662 prep of,activity
R3852 T5665 T5664 pobj Mcm4,of
R3853 T5666 T5665 punct /,Mcm4
R3854 T5667 T5665 nummod 6,Mcm4
R3855 T5668 T5665 punct /,Mcm4
R3856 T5669 T5665 nummod 7,Mcm4
R3857 T5670 T5671 punct (,10
R3858 T5671 T5652 parataxis 10,is
R3859 T5672 T5671 punct ),10
R3860 T5673 T5630 punct .,expected
R3861 T5675 T5676 prep In,binds
R3862 T5677 T5675 pobj contrast,In
R3863 T5678 T5676 punct ", ",binds
R3864 T5679 T5680 det the,PriA
R3865 T5680 T5676 nsubj PriA,binds
R3866 T5681 T5680 punct ", ",PriA
R3867 T5682 T5683 det a,helicase
R3868 T5683 T5680 appos helicase,PriA
R3869 T5684 T5685 npadvmod structure,specific
R3870 T5685 T5683 amod specific,helicase
R3871 T5686 T5685 punct -,specific
R3872 T5687 T5683 acl used,helicase
R3873 T5688 T5687 prep as,used
R3874 T5689 T5690 det a,control
R3875 T5690 T5688 pobj control,as
R3876 T5691 T5676 punct ", ",binds
R3877 T5692 T5676 prep at,binds
R3878 T5693 T5694 det the,junction
R3879 T5694 T5692 pobj junction,at
R3880 T5695 T5694 compound fork,junction
R3881 T5696 T5676 cc and,binds
R3882 T5697 T5676 conj unwinds,binds
R3883 T5698 T5699 det the,fork
R3884 T5699 T5697 dobj fork,unwinds
R3885 T5700 T5699 cc and,fork
R3886 T5701 T5702 det the,DNA
R3887 T5702 T5699 conj DNA,fork
R3888 T5703 T5702 amod nascent,DNA
R3889 T5704 T5702 amod lagging,DNA
R3890 T5705 T5702 compound strand,DNA
R3891 T5706 T5702 prep on,DNA
R3892 T5707 T5708 compound A,fork
R3893 T5708 T5706 pobj fork,on
R3894 T5709 T5708 punct -,fork
R3895 T5710 T5708 punct [,fork
R3896 T5711 T5708 nummod 5,fork
R3897 T5712 T5708 punct ′,fork
R3898 T5713 T5676 punct ],binds
R3899 T5714 T5676 punct ", ",binds
R3900 T5715 T5676 cc or,binds
R3901 T5716 T5676 conj unwinds,binds
R3902 T5717 T5718 det the,strand
R3903 T5718 T5716 dobj strand,unwinds
R3904 T5719 T5718 amod nascent,strand
R3905 T5720 T5718 amod lagging,strand
R3906 T5721 T5716 prep on,unwinds
R3907 T5722 T5723 compound A,fork
R3908 T5723 T5721 pobj fork,on
R3909 T5724 T5723 punct -,fork
R3910 T5725 T5723 punct [,fork
R3911 T5726 T5723 appos 3,fork
R3912 T5727 T5726 punct ′,3
R3913 T5728 T5726 punct ",",3
R3914 T5729 T5726 appos 5,3
R3915 T5730 T5729 punct ′,5
R3916 T5731 T5676 punct ],binds
R3917 T5732 T5676 punct ", ",binds
R3918 T5733 T5734 mark as,reported
R3919 T5734 T5676 advcl reported,binds
R3920 T5735 T5734 advmod before,reported
R3921 T5736 T5737 punct (,25
R3922 T5737 T5734 parataxis 25,reported
R3923 T5738 T5737 punct ),25
R3924 T5739 T5676 punct .,binds
R3925 T5741 T5742 det These,results
R3926 T5742 T5743 nsubj results,indicate
R3927 T5744 T5745 mark that,binds
R3928 T5745 T5743 advcl binds,indicate
R3929 T5746 T5747 det the,complex
R3930 T5747 T5745 nsubj complex,binds
R3931 T5748 T5747 nmod Mcm4,complex
R3932 T5749 T5748 punct /,Mcm4
R3933 T5750 T5748 nummod 6,Mcm4
R3934 T5751 T5748 punct /,Mcm4
R3935 T5752 T5748 nummod 7,Mcm4
R3936 T5753 T5745 prep to,binds
R3937 T5754 T5755 amod single,stranded
R3938 T5755 T5757 amod stranded,DNA
R3939 T5756 T5755 punct -,stranded
R3940 T5757 T5753 pobj DNA,to
R3941 T5758 T5745 cc and,binds
R3942 T5759 T5760 mark that,activated
R3943 T5760 T5745 conj activated,binds
R3944 T5761 T5762 poss its,helicase
R3945 T5762 T5760 nsubjpass helicase,activated
R3946 T5763 T5760 auxpass is,activated
R3947 T5764 T5765 advmod only,in
R3948 T5765 T5760 prep in,activated
R3949 T5766 T5767 det the,presence
R3950 T5767 T5765 pobj presence,in
R3951 T5768 T5767 prep of,presence
R3952 T5769 T5770 det a,tail
R3953 T5770 T5768 pobj tail,of
R3954 T5771 T5772 amod single,stranded
R3955 T5772 T5770 amod stranded,tail
R3956 T5773 T5772 punct -,stranded
R3957 T5774 T5770 nummod 3,tail
R3958 T5775 T5774 punct ′,3
R3959 T5776 T5770 punct -,tail
R3960 T5777 T5743 punct .,indicate
R3967 T5933 T5934 nummod 3,extension
R3968 T5934 T5937 nsubjpass extension,displaced
R3969 T5935 T5933 punct ′,3
R3970 T5936 T5934 punct -,extension
R3971 T5938 T5934 prep with,extension
R3972 T5939 T5940 nmod poly,dT
R3973 T5940 T5942 nmod dT,tail
R3974 T5941 T5940 punct (,dT
R3975 T5942 T5938 pobj tail,with
R3976 T5943 T5942 punct ),tail
R3977 T5944 T5937 auxpass is,displaced
R3978 T5945 T5937 agent by,displaced
R3979 T5946 T5945 pobj Mcm4,by
R3980 T5947 T5946 punct /,Mcm4
R3981 T5948 T5946 nummod 6,Mcm4
R3982 T5949 T5946 punct /,Mcm4
R3983 T5950 T5946 nummod 7,Mcm4
R3984 T5952 T5953 nsubjpass It,reported
R3985 T5954 T5953 aux has,reported
R3986 T5955 T5953 auxpass been,reported
R3987 T5956 T5957 mark that,unwound
R3988 T5957 T5953 ccomp unwound,reported
R3989 T5958 T5959 det the,extension
R3990 T5959 T5957 nsubj extension,unwound
R3991 T5960 T5959 nummod 3,extension
R3992 T5961 T5960 punct ′,3
R3993 T5962 T5959 punct -,extension
R3994 T5963 T5957 aux can,unwound
R3995 T5964 T5957 aux be,unwound
R3996 T5965 T5957 agent by,unwound
R3997 T5966 T5967 det the,homohexamer
R3998 T5967 T5965 pobj homohexamer,by
R3999 T5968 T5967 amod archaeal,homohexamer
R4000 T5969 T5967 compound Mcm,homohexamer
R4001 T5970 T5957 cc but,unwound
R4002 T5971 T5957 conj not,unwound
R4003 T5972 T5971 agent by,not
R4004 T5973 T5974 nmod fission,complexes
R4005 T5974 T5972 pobj complexes,by
R4006 T5975 T5973 cc and,fission
R4007 T5976 T5973 conj budding,fission
R4008 T5977 T5974 compound yeast,complexes
R4009 T5978 T5974 compound Mcm,complexes
R4010 T5979 T5980 punct (,27
R4011 T5980 T5953 parataxis 27,reported
R4012 T5981 T5980 nummod 14,27
R4013 T5982 T5980 punct ",",27
R4014 T5983 T5980 nummod 26,27
R4015 T5984 T5980 punct ",",27
R4016 T5985 T5980 punct ),27
R4017 T5986 T5953 punct .,reported
R4018 T5988 T5989 nsubj We,constructed
R4019 T5990 T5989 aux have,constructed
R4020 T5991 T5992 nummod 3,extension
R4021 T5992 T5995 compound extension,substrates
R4022 T5993 T5991 punct ′,3
R4023 T5994 T5992 punct -,extension
R4024 T5995 T5989 dobj substrates,constructed
R4025 T5996 T5995 acl containing,substrates
R4026 T5997 T5998 nmod poly,dT
R4027 T5998 T6000 nmod dT,tails
R4028 T5999 T5998 punct (,dT
R4029 T6000 T5996 dobj tails,containing
R4030 T6001 T5998 punct ),dT
R4031 T6002 T5998 punct ", ",dT
R4032 T6003 T6004 nmod poly,dA
R4033 T6004 T5998 conj dA,dT
R4034 T6005 T6004 punct (,dA
R4035 T6006 T6004 punct ),dA
R4036 T6007 T6004 punct ", ",dA
R4037 T6008 T6009 nmod poly,dC
R4038 T6009 T6004 conj dC,dA
R4039 T6010 T6009 punct (,dC
R4040 T6011 T6009 punct ),dC
R4041 T6012 T6009 cc and,dC
R4042 T6013 T6014 nmod poly,dG
R4043 T6014 T6009 conj dG,dC
R4044 T6015 T6014 punct (,dG
R4045 T6016 T6014 punct ),dG
R4046 T6017 T6000 nummod 3,tails
R4047 T6018 T6017 punct ′,3
R4048 T6019 T6000 punct -,tails
R4049 T6020 T5989 prep in,constructed
R4050 T6021 T6020 pobj order,in
R4051 T6022 T6023 aux to,examine
R4052 T6023 T6021 acl examine,order
R4053 T6024 T6025 mark whether,displace
R4054 T6025 T6023 ccomp displace,examine
R4055 T6026 T6027 compound mouse,Mcm4
R4056 T6027 T6025 nsubj Mcm4,displace
R4057 T6028 T6027 punct /,Mcm4
R4058 T6029 T6027 nummod 6,Mcm4
R4059 T6030 T6027 punct /,Mcm4
R4060 T6031 T6027 nummod 7,Mcm4
R4061 T6032 T6025 aux can,displace
R4062 T6033 T6034 det these,substrates
R4063 T6034 T6025 dobj substrates,displace
R4064 T6035 T5989 punct .,constructed
R4065 T6037 T6038 nsubj We,found
R4066 T6039 T6038 advmod first,found
R4067 T6040 T6041 mark that,binds
R4068 T6041 T6038 ccomp binds,found
R4069 T6042 T6041 nsubj Mcm4,binds
R4070 T6043 T6042 punct /,Mcm4
R4071 T6044 T6042 nummod 6,Mcm4
R4072 T6045 T6042 punct /,Mcm4
R4073 T6046 T6042 nummod 7,Mcm4
R4074 T6047 T6041 prep to,binds
R4075 T6048 T6049 nmod dT,extension
R4076 T6049 T6047 pobj extension,to
R4077 T6050 T6048 punct -,dT
R4078 T6051 T6048 punct ", ",dT
R4079 T6052 T6048 conj dC,dT
R4080 T6053 T6052 punct -,dC
R4081 T6054 T6052 cc and,dC
R4082 T6055 T6052 conj dG,dC
R4083 T6056 T6049 punct -,extension
R4084 T6057 T6049 nummod 3,extension
R4085 T6058 T6057 punct ′,3
R4086 T6059 T6049 punct -,extension
R4087 T6060 T6041 prep with,binds
R4088 T6061 T6062 amod similar,affinity
R4089 T6062 T6060 pobj affinity,with
R4090 T6063 T6041 punct ", ",binds
R4091 T6064 T6041 cc and,binds
R4092 T6065 T6041 conj to,binds
R4093 T6066 T6067 nmod dA,extension
R4094 T6067 T6065 pobj extension,to
R4095 T6068 T6067 punct -,extension
R4096 T6069 T6067 nummod 3,extension
R4097 T6070 T6069 punct ′,3
R4098 T6071 T6067 punct -,extension
R4099 T6072 T6065 prep with,to
R4100 T6073 T6074 advmod much,lower
R4101 T6074 T6075 amod lower,affinity
R4102 T6075 T6072 pobj affinity,with
R4103 T6076 T6077 punct (,5A
R4104 T6077 T6065 parataxis 5A,to
R4105 T6078 T6077 compound Figure,5A
R4106 T6079 T6077 punct ),5A
R4107 T6080 T6038 punct .,found
R4108 T6082 T6083 nsubj This,is
R4109 T6084 T6083 acomp consistent,is
R4110 T6085 T6084 prep with,consistent
R4111 T6086 T6087 det the,results
R4112 T6087 T6085 pobj results,with
R4113 T6088 T6087 amod previous,results
R4114 T6089 T6090 mark that,binds
R4115 T6090 T6087 acl binds,results
R4116 T6091 T6090 nsubj Mcm4,binds
R4117 T6092 T6091 punct /,Mcm4
R4118 T6093 T6091 nummod 6,Mcm4
R4119 T6094 T6091 punct /,Mcm4
R4120 T6095 T6091 nummod 7,Mcm4
R4121 T6096 T6090 prep to,binds
R4122 T6097 T6098 compound 50mer,dT
R4123 T6098 T6096 pobj dT,to
R4124 T6099 T6098 compound oligo,dT
R4125 T6100 T6098 punct -,dT
R4126 T6101 T6098 punct ", ",dT
R4127 T6102 T6103 punct -,dC
R4128 T6103 T6098 conj dC,dT
R4129 T6104 T6103 cc and,dC
R4130 T6105 T6106 punct -,dG
R4131 T6106 T6103 conj dG,dC
R4132 T6107 T6096 punct ", ",to
R4133 T6108 T6096 cc but,to
R4134 T6109 T6108 neg not,but
R4135 T6110 T6096 conj to,to
R4136 T6111 T6112 det a,dA
R4137 T6112 T6110 pobj dA,to
R4138 T6113 T6112 compound 50mer,dA
R4139 T6114 T6112 compound oligo,dA
R4140 T6115 T6112 punct -,dA
R4141 T6116 T6117 punct (,13
R4142 T6117 T6083 parataxis 13,is
R4143 T6118 T6117 punct ),13
R4144 T6119 T6083 punct .,is
R4145 T6121 T6122 nsubj We,found
R4146 T6123 T6124 mark that,displaced
R4147 T6124 T6122 ccomp displaced,found
R4148 T6125 T6126 npadvmod dT,tailed
R4149 T6126 T6128 amod tailed,extension
R4150 T6127 T6126 punct -,tailed
R4151 T6128 T6124 nsubjpass extension,displaced
R4152 T6129 T6128 nummod 3,extension
R4153 T6130 T6129 punct ′,3
R4154 T6131 T6128 punct -,extension
R4155 T6132 T6124 auxpass was,displaced
R4156 T6133 T6124 advmod efficiently,displaced
R4157 T6134 T6124 agent by,displaced
R4158 T6135 T6134 pobj Mcm,by
R4159 T6136 T6135 nummod 4,Mcm
R4160 T6137 T6135 punct /,Mcm
R4161 T6138 T6135 nummod 6,Mcm
R4162 T6139 T6135 punct /,Mcm
R4163 T6140 T6135 nummod 7,Mcm
R4164 T6141 T6142 mark while,detected
R4165 T6142 T6124 advcl detected,displaced
R4166 T6143 T6144 advmod almost,no
R4167 T6144 T6142 nsubjpass no,detected
R4168 T6145 T6144 cc or,no
R4169 T6146 T6147 advmod very,little
R4170 T6147 T6148 nmod little,activity
R4171 T6148 T6144 conj activity,no
R4172 T6149 T6142 auxpass was,detected
R4173 T6150 T6142 prep on,detected
R4174 T6151 T6152 amod other,substrates
R4175 T6152 T6150 pobj substrates,on
R4176 T6153 T6154 punct (,5B
R4177 T6154 T6142 parataxis 5B,detected
R4178 T6155 T6154 compound Figure,5B
R4179 T6156 T6154 cc and,5B
R4180 T6157 T6154 conj C,5B
R4181 T6158 T6154 punct ),5B
R4182 T6159 T6122 punct .,found
R4183 T6161 T6162 nsubj This,is
R4184 T6163 T6162 prep in,is
R4185 T6164 T6165 amod sharp,contrast
R4186 T6165 T6163 pobj contrast,in
R4187 T6166 T6165 prep to,contrast
R4188 T6167 T6168 nmod yeast,helicases
R4189 T6168 T6166 pobj helicases,to
R4190 T6169 T6168 nmod Mcm4,helicases
R4191 T6170 T6169 punct /,Mcm4
R4192 T6171 T6169 nummod 6,Mcm4
R4193 T6172 T6169 punct /,Mcm4
R4194 T6173 T6169 nummod 7,Mcm4
R4195 T6174 T6175 dep which,are
R4196 T6175 T6168 relcl are,helicases
R4197 T6176 T6175 neg not,are
R4198 T6177 T6175 acomp capable,are
R4199 T6178 T6177 prep of,capable
R4200 T6179 T6178 pcomp unwinding,of
R4201 T6180 T6181 nummod 3,extension
R4202 T6181 T6184 compound extension,substrates
R4203 T6182 T6180 punct ′,3
R4204 T6183 T6181 punct -,extension
R4205 T6184 T6179 dobj substrates,unwinding
R4206 T6185 T6162 punct .,is
R4207 T6187 T6188 advmod Furthermore,displaced
R4208 T6189 T6188 punct ", ",displaced
R4209 T6190 T6191 npadvmod dT,tailed
R4210 T6191 T6193 amod tailed,extension
R4211 T6192 T6191 punct -,tailed
R4212 T6193 T6188 nsubjpass extension,displaced
R4213 T6194 T6193 nummod 5,extension
R4214 T6195 T6194 punct ′,5
R4215 T6196 T6193 punct -,extension
R4216 T6197 T6193 punct ", ",extension
R4217 T6198 T6199 prep to,bind
R4218 T6199 T6193 relcl bind,extension
R4219 T6200 T6198 pobj which,to
R4220 T6201 T6199 nsubj Mcm4,bind
R4221 T6202 T6201 punct /,Mcm4
R4222 T6203 T6201 nummod 6,Mcm4
R4223 T6204 T6201 punct /,Mcm4
R4224 T6205 T6201 nummod 7,Mcm4
R4225 T6206 T6199 aux could,bind
R4226 T6207 T6188 punct ", ",displaced
R4227 T6208 T6188 auxpass was,displaced
R4228 T6209 T6188 neg not,displaced
R4229 T6210 T6188 agent by,displaced
R4230 T6211 T6212 det the,helicase
R4231 T6212 T6210 pobj helicase,by
R4232 T6213 T6212 compound Mcm,helicase
R4233 T6214 T6188 punct .,displaced
R4234 T6216 T6217 det The,addition
R4235 T6217 T6218 nsubj addition,stimulated
R4236 T6219 T6217 prep of,addition
R4237 T6220 T6221 det the,tail
R4238 T6221 T6219 pobj tail,of
R4239 T6222 T6221 nummod 5,tail
R4240 T6223 T6222 punct ′,5
R4241 T6224 T6221 punct -,tail
R4242 T6225 T6217 prep to,addition
R4243 T6226 T6227 npadvmod dT,tailed
R4244 T6227 T6229 amod tailed,extension
R4245 T6228 T6227 punct -,tailed
R4246 T6229 T6225 pobj extension,to
R4247 T6230 T6229 nummod 3,extension
R4248 T6231 T6230 punct ′,3
R4249 T6232 T6229 punct -,extension
R4250 T6233 T6218 advmod further,stimulated
R4251 T6234 T6235 det the,displacement
R4252 T6235 T6218 dobj displacement,stimulated
R4253 T6236 T6237 punct (,5D
R4254 T6237 T6235 parataxis 5D,displacement
R4255 T6238 T6237 compound Figure,5D
R4256 T6239 T6237 punct ),5D
R4257 T6240 T6218 punct ", ",stimulated
R4258 T6241 T6218 advcl confirming,stimulated
R4259 T6242 T6243 det the,report
R4260 T6243 T6241 dobj report,confirming
R4261 T6244 T6243 amod previous,report
R4262 T6245 T6246 mark that,facilitate
R4263 T6246 T6243 acl facilitate,report
R4264 T6247 T6248 det the,structures
R4265 T6248 T6246 nsubj structures,facilitate
R4266 T6249 T6248 compound fork,structures
R4267 T6250 T6251 det the,action
R4268 T6251 T6246 dobj action,facilitate
R4269 T6252 T6251 compound helicase,action
R4270 T6253 T6218 punct .,stimulated
R4271 T6255 T6256 advmod Thus,strengthen
R4272 T6257 T6256 punct ", ",strengthen
R4273 T6258 T6259 det these,results
R4274 T6259 T6256 nsubj results,strengthen
R4275 T6260 T6256 advmod further,strengthen
R4276 T6261 T6262 poss our,conclusion
R4277 T6262 T6256 dobj conclusion,strengthen
R4278 T6263 T6264 mark that,activated
R4279 T6264 T6262 acl activated,conclusion
R4280 T6265 T6266 det the,helicase
R4281 T6266 T6264 nsubjpass helicase,activated
R4282 T6267 T6266 amod mammalian,helicase
R4283 T6268 T6266 compound Mcm,helicase
R4284 T6269 T6264 auxpass is,activated
R4285 T6270 T6264 advmod generally,activated
R4286 T6271 T6264 agent by,activated
R4287 T6272 T6273 det the,stretch
R4288 T6273 T6271 pobj stretch,by
R4289 T6274 T6273 compound thymine,stretch
R4290 T6275 T6273 punct -,stretch
R4291 T6276 T6273 prep on,stretch
R4292 T6277 T6278 det the,tail
R4293 T6278 T6276 pobj tail,on
R4294 T6279 T6278 nummod 3,tail
R4295 T6280 T6279 punct ′,3
R4296 T6281 T6278 punct -,tail
R4297 T6282 T6283 amod single,stranded
R4298 T6283 T6278 amod stranded,tail
R4299 T6284 T6283 punct -,stranded
R4300 T6285 T6256 punct .,strengthen
R4301 T6404 T6405 det The,effects
R4302 T6406 T6405 prep of,effects
R4303 T6407 T6408 det the,content
R4304 T6408 T6406 pobj content,of
R4305 T6409 T6408 compound thymine,content
R4306 T6410 T6408 prep of,content
R4307 T6411 T6412 det the,tail
R4308 T6412 T6410 pobj tail,of
R4309 T6413 T6412 nummod 3,tail
R4310 T6414 T6413 punct ′,3
R4311 T6415 T6412 punct -,tail
R4312 T6416 T6405 prep on,effects
R4313 T6417 T6418 compound Mcm,helicase
R4314 T6418 T6419 compound helicase,activity
R4315 T6419 T6416 pobj activity,on
R4316 T6421 T6422 nsubj We,examined
R4317 T6423 T6422 advmod next,examined
R4318 T6424 T6425 advmod more,systematically
R4319 T6425 T6422 advmod systematically,examined
R4320 T6426 T6427 det the,effect
R4321 T6427 T6422 dobj effect,examined
R4322 T6428 T6427 prep of,effect
R4323 T6429 T6430 det the,compositions
R4324 T6430 T6428 pobj compositions,of
R4325 T6431 T6430 prep of,compositions
R4326 T6432 T6433 det the,residues
R4327 T6433 T6431 pobj residues,of
R4328 T6434 T6433 compound thymine,residues
R4329 T6435 T6433 prep of,residues
R4330 T6436 T6437 det the,tail
R4331 T6437 T6435 pobj tail,of
R4332 T6438 T6437 nummod 3,tail
R4333 T6439 T6438 punct ′,3
R4334 T6440 T6437 punct -,tail
R4335 T6441 T6427 prep on,effect
R4336 T6442 T6443 det the,activity
R4337 T6443 T6441 pobj activity,on
R4338 T6444 T6445 compound Mcm,helicase
R4339 T6445 T6443 compound helicase,activity
R4340 T6446 T6422 punct .,examined
R4341 T6448 T6449 det A,DNA
R4342 T6449 T6456 nsubjpass DNA,constructed
R4343 T6450 T6449 amod partial,DNA
R4344 T6451 T6449 nmod heteroduplex,DNA
R4345 T6452 T6449 nmod M13,DNA
R4346 T6453 T6454 amod single,stranded
R4347 T6454 T6449 amod stranded,DNA
R4348 T6455 T6454 punct -,stranded
R4349 T6457 T6449 acl containing,DNA
R4350 T6458 T6459 det a,region
R4351 T6459 T6457 dobj region,containing
R4352 T6460 T6461 nummod 37,bp
R4353 T6461 T6459 compound bp,region
R4354 T6462 T6459 compound duplex,region
R4355 T6463 T6457 prep in,containing
R4356 T6464 T6465 det the,presence
R4357 T6465 T6463 pobj presence,in
R4358 T6466 T6465 cc or,presence
R4359 T6467 T6465 conj absence,presence
R4360 T6468 T6465 prep of,presence
R4361 T6469 T6470 det the,tail
R4362 T6470 T6468 pobj tail,of
R4363 T6471 T6472 nummod 50,nt
R4364 T6472 T6473 npadvmod nt,long
R4365 T6473 T6470 amod long,tail
R4366 T6474 T6470 nummod 3,tail
R4367 T6475 T6474 punct ′,3
R4368 T6476 T6470 punct -,tail
R4369 T6477 T6470 prep of,tail
R4370 T6478 T6479 amod various,compositions
R4371 T6479 T6477 pobj compositions,of
R4372 T6480 T6479 compound nucleotide,compositions
R4373 T6481 T6456 auxpass were,constructed
R4374 T6482 T6456 cc and,constructed
R4375 T6483 T6484 det the,unwinding
R4376 T6484 T6485 nsubjpass unwinding,examined
R4377 T6485 T6456 conj examined,constructed
R4378 T6486 T6484 prep by,unwinding
R4379 T6487 T6488 compound mouse,Mcm4
R4380 T6488 T6486 pobj Mcm4,by
R4381 T6489 T6488 punct /,Mcm4
R4382 T6490 T6488 nummod 6,Mcm4
R4383 T6491 T6488 punct /,Mcm4
R4384 T6492 T6488 nummod 7,Mcm4
R4385 T6493 T6485 auxpass was,examined
R4386 T6494 T6495 punct (,6A
R4387 T6495 T6485 parataxis 6A,examined
R4388 T6496 T6495 compound Figure,6A
R4389 T6497 T6495 punct ),6A
R4390 T6498 T6485 punct .,examined
R4391 T6500 T6501 prep Due,displaced
R4392 T6502 T6500 pcomp to,Due
R4393 T6503 T6504 poss its,processivity
R4394 T6504 T6500 pobj processivity,Due
R4395 T6505 T6504 amod low,processivity
R4396 T6506 T6501 punct ", ",displaced
R4397 T6507 T6501 nsubj Mcm4,displaced
R4398 T6508 T6507 punct /,Mcm4
R4399 T6509 T6507 nummod 6,Mcm4
R4400 T6510 T6507 punct /,Mcm4
R4401 T6511 T6507 nummod 7,Mcm4
R4402 T6512 T6501 advmod barely,displaced
R4403 T6513 T6514 det the,oligonucleotide
R4404 T6514 T6501 dobj oligonucleotide,displaced
R4405 T6515 T6514 amod annealed,oligonucleotide
R4406 T6516 T6514 compound 37mer,oligonucleotide
R4407 T6517 T6514 prep without,oligonucleotide
R4408 T6518 T6519 det a,tail
R4409 T6519 T6517 pobj tail,without
R4410 T6520 T6519 nummod 3,tail
R4411 T6521 T6520 punct ′,3
R4412 T6522 T6519 punct -,tail
R4413 T6523 T6524 punct (,6A
R4414 T6524 T6514 parataxis 6A,oligonucleotide
R4415 T6525 T6524 dep 37mer,6A
R4416 T6526 T6524 punct ;,6A
R4417 T6527 T6524 compound Figure,6A
R4418 T6528 T6524 punct ),6A
R4419 T6529 T6501 punct .,displaced
R4420 T6531 T6532 advmod Only,activity
R4421 T6532 T6535 nsubjpass activity,observed
R4422 T6533 T6532 amod weak,activity
R4423 T6534 T6532 compound helicase,activity
R4424 T6536 T6535 auxpass was,observed
R4425 T6537 T6535 prep on,observed
R4426 T6538 T6539 det the,substrate
R4427 T6539 T6537 pobj substrate,on
R4428 T6540 T6539 acl carrying,substrate
R4429 T6541 T6542 det the,tail
R4430 T6542 T6540 dobj tail,carrying
R4431 T6543 T6542 nummod 3,tail
R4432 T6544 T6543 punct ′,3
R4433 T6545 T6542 punct -,tail
R4434 T6546 T6542 prep of,tail
R4435 T6547 T6548 nummod 25,repeats
R4436 T6548 T6546 pobj repeats,of
R4437 T6549 T6548 prep of,repeats
R4438 T6550 T6551 compound TA,dinucleotide
R4439 T6551 T6549 pobj dinucleotide,of
R4440 T6552 T6553 punct (,6A
R4441 T6553 T6540 parataxis 6A,carrying
R4442 T6554 T6555 nummod 37,TA25
R4443 T6555 T6553 dep TA25,6A
R4444 T6556 T6555 punct -,TA25
R4445 T6557 T6553 punct ;,6A
R4446 T6558 T6553 compound Figure,6A
R4447 T6559 T6553 punct ),6A
R4448 T6560 T6535 punct ", ",observed
R4449 T6561 T6562 mark whereas,observed
R4450 T6562 T6535 advcl observed,observed
R4451 T6563 T6564 amod strong,activity
R4452 T6564 T6562 nsubjpass activity,observed
R4453 T6565 T6564 compound helicase,activity
R4454 T6566 T6562 auxpass was,observed
R4455 T6567 T6562 prep on,observed
R4456 T6568 T6569 nummod 37,TTA17
R4457 T6569 T6567 pobj TTA17,on
R4458 T6570 T6569 punct -,TTA17
R4459 T6571 T6535 punct .,observed
R4460 T6573 T6574 nsubj Increase,increase
R4461 T6575 T6573 prep of,Increase
R4462 T6576 T6577 compound thymine,content
R4463 T6577 T6575 pobj content,of
R4464 T6578 T6573 prep on,Increase
R4465 T6579 T6580 det the,tail
R4466 T6580 T6578 pobj tail,on
R4467 T6581 T6580 nummod 3,tail
R4468 T6582 T6581 punct ′,3
R4469 T6583 T6580 punct -,tail
R4470 T6584 T6574 aux did,increase
R4471 T6585 T6574 neg not,increase
R4472 T6586 T6574 advmod further,increase
R4473 T6587 T6588 det the,extent
R4474 T6588 T6574 dobj extent,increase
R4475 T6589 T6588 prep of,extent
R4476 T6590 T6589 pobj unwinding,of
R4477 T6591 T6592 punct (,6A
R4478 T6592 T6590 parataxis 6A,unwinding
R4479 T6593 T6594 nummod 37,TTTA13
R4480 T6594 T6592 dep TTTA13,6A
R4481 T6595 T6594 punct -,TTTA13
R4482 T6596 T6594 punct ", ",TTTA13
R4483 T6597 T6598 nummod 37,TTTTA10
R4484 T6598 T6594 conj TTTTA10,TTTA13
R4485 T6599 T6598 punct -,TTTTA10
R4486 T6600 T6598 cc and,TTTTA10
R4487 T6601 T6602 nummod 37,T50
R4488 T6602 T6598 conj T50,TTTTA10
R4489 T6603 T6602 punct -,T50
R4490 T6604 T6592 punct ;,6A
R4491 T6605 T6592 compound Figure,6A
R4492 T6606 T6592 punct ),6A
R4493 T6607 T6574 punct ", ",increase
R4494 T6608 T6574 advcl suggesting,increase
R4495 T6609 T6610 mark that,be
R4496 T6610 T6608 ccomp be,suggesting
R4497 T6611 T6612 nummod 17,repeats
R4498 T6612 T6610 nsubj repeats,be
R4499 T6613 T6612 prep of,repeats
R4500 T6614 T6615 compound TT,dinucleotides
R4501 T6615 T6613 pobj dinucleotides,of
R4502 T6616 T6617 punct (,thymine
R4503 T6617 T6615 parataxis thymine,dinucleotides
R4504 T6618 T6619 nummod 67,%
R4505 T6619 T6617 compound %,thymine
R4506 T6620 T6617 punct ),thymine
R4507 T6621 T6610 aux may,be
R4508 T6622 T6610 acomp sufficient,be
R4509 T6623 T6622 prep for,sufficient
R4510 T6624 T6623 pobj activation,for
R4511 T6625 T6624 prep of,activation
R4512 T6626 T6627 compound Mcm,helicase
R4513 T6627 T6625 pobj helicase,of
R4514 T6628 T6574 punct .,increase
R4515 T6630 T6631 nsubjpass It,noted
R4516 T6632 T6631 aux should,noted
R4517 T6633 T6631 auxpass be,noted
R4518 T6634 T6635 mark that,anneal
R4519 T6635 T6631 ccomp anneal,noted
R4520 T6636 T6637 det the,tail
R4521 T6637 T6635 nsubj tail,anneal
R4522 T6638 T6637 compound TA25,tail
R4523 T6639 T6635 aux would,anneal
R4524 T6640 T6635 dep self,anneal
R4525 T6641 T6635 punct -,anneal
R4526 T6642 T6635 cc and,anneal
R4527 T6643 T6644 nsubj this,prevent
R4528 T6644 T6635 conj prevent,anneal
R4529 T6645 T6644 aux would,prevent
R4530 T6646 T6647 det the,loading
R4531 T6647 T6644 dobj loading,prevent
R4532 T6648 T6647 prep of,loading
R4533 T6649 T6648 pobj Mcm,of
R4534 T6650 T6631 punct ", ",noted
R4535 T6651 T6652 mark since,enhance
R4536 T6652 T6631 advcl enhance,noted
R4537 T6653 T6654 det the,tail
R4538 T6654 T6652 nsubj tail,enhance
R4539 T6655 T6654 nummod 3,tail
R4540 T6656 T6655 punct ′,3
R4541 T6657 T6654 punct -,tail
R4542 T6658 T6654 acl containing,tail
R4543 T6659 T6658 dobj TTAA13,containing
R4544 T6660 T6659 cc or,TTAA13
R4545 T6661 T6659 conj TTTAAA8,TTAA13
R4546 T6662 T6652 aux did,enhance
R4547 T6663 T6652 neg not,enhance
R4548 T6664 T6665 det the,unwinding
R4549 T6665 T6652 dobj unwinding,enhance
R4550 T6666 T6652 advmod either,enhance
R4551 T6667 T6668 punct (,shown
R4552 T6668 T6652 parataxis shown,enhance
R4553 T6669 T6668 nsubj data,shown
R4554 T6670 T6668 neg not,shown
R4555 T6671 T6668 punct ),shown
R4556 T6672 T6631 punct .,noted
R4557 T6674 T6675 advmod Therefore,examined
R4558 T6676 T6675 punct ", ",examined
R4559 T6677 T6675 nsubj we,examined
R4560 T6678 T6675 advmod next,examined
R4561 T6679 T6680 det the,effects
R4562 T6680 T6675 dobj effects,examined
R4563 T6681 T6680 prep of,effects
R4564 T6682 T6683 amod repeating,sequences
R4565 T6683 T6681 pobj sequences,of
R4566 T6684 T6683 prep of,sequences
R4567 T6685 T6684 pobj thymine,of
R4568 T6686 T6685 cc and,thymine
R4569 T6687 T6685 conj cytosine,thymine
R4570 T6688 T6689 punct (,6B
R4571 T6689 T6675 parataxis 6B,examined
R4572 T6690 T6689 compound Figure,6B
R4573 T6691 T6689 punct ),6B
R4574 T6692 T6675 punct .,examined
R4575 T6694 T6695 amod Partial,substrates
R4576 T6695 T6697 nsubjpass substrates,displaced
R4577 T6696 T6695 compound heteroduplex,substrates
R4578 T6698 T6695 acl containing,substrates
R4579 T6699 T6700 det the,tail
R4580 T6700 T6698 dobj tail,containing
R4581 T6701 T6700 nummod 3,tail
R4582 T6702 T6701 punct ′,3
R4583 T6703 T6700 punct -,tail
R4584 T6704 T6700 prep of,tail
R4585 T6705 T6706 nmod TC25,TTCC17
R4586 T6706 T6704 pobj TTCC17,of
R4587 T6707 T6706 punct ", ",TTCC17
R4588 T6708 T6706 nmod TTCC13,TTCC17
R4589 T6709 T6706 punct ", ",TTCC17
R4590 T6710 T6706 nmod TTTCCC8,TTCC17
R4591 T6711 T6706 punct ", ",TTCC17
R4592 T6712 T6706 nmod TTTTCCCC6,TTCC17
R4593 T6713 T6706 punct ", ",TTCC17
R4594 T6714 T6697 auxpass were,displaced
R4595 T6715 T6697 agent by,displaced
R4596 T6716 T6717 det the,complex
R4597 T6717 T6715 pobj complex,by
R4598 T6718 T6717 nmod Mcm4,complex
R4599 T6719 T6718 punct /,Mcm4
R4600 T6720 T6718 nummod 6,Mcm4
R4601 T6721 T6718 punct /,Mcm4
R4602 T6722 T6718 nummod 7,Mcm4
R4603 T6723 T6697 prep to,displaced
R4604 T6724 T6725 det the,extent
R4605 T6725 T6723 pobj extent,to
R4606 T6726 T6725 amod similar,extent
R4607 T6727 T6726 prep to,similar
R4608 T6728 T6727 pobj that,to
R4609 T6729 T6728 acl achieved,that
R4610 T6730 T6729 agent by,achieved
R4611 T6731 T6730 pobj TTA17,by
R4612 T6732 T6697 punct ", ",displaced
R4613 T6733 T6697 advcl suggesting,displaced
R4614 T6734 T6735 mark that,is
R4615 T6735 T6733 ccomp is,suggesting
R4616 T6736 T6737 nummod 50,%
R4617 T6737 T6738 compound %,content
R4618 T6738 T6735 nsubj content,is
R4619 T6739 T6738 compound thymine,content
R4620 T6740 T6735 acomp sufficient,is
R4621 T6741 T6740 prep for,sufficient
R4622 T6742 T6743 amod full,activation
R4623 T6743 T6741 pobj activation,for
R4624 T6744 T6743 prep of,activation
R4625 T6745 T6746 compound Mcm,helicase
R4626 T6746 T6744 pobj helicase,of
R4627 T6747 T6697 punct .,displaced
R4628 T6749 T6750 nsubjpass TTCC13,displaced
R4629 T6751 T6749 cc and,TTCC13
R4630 T6752 T6749 conj TTCC17,TTCC13
R4631 T6753 T6750 auxpass were,displaced
R4632 T6754 T6750 prep to,displaced
R4633 T6755 T6756 det a,extent
R4634 T6756 T6754 pobj extent,to
R4635 T6757 T6756 amod similar,extent
R4636 T6758 T6750 punct ", ",displaced
R4637 T6759 T6750 advcl consistent,displaced
R4638 T6760 T6759 prep with,consistent
R4639 T6761 T6762 det the,result
R4640 T6762 T6760 pobj result,with
R4641 T6763 T6762 amod earlier,result
R4642 T6764 T6765 mark that,is
R4643 T6765 T6762 acl is,result
R4644 T6766 T6767 det a,tail
R4645 T6767 T6765 nsubj tail,is
R4646 T6768 T6769 nummod 40,nt
R4647 T6769 T6767 compound nt,tail
R4648 T6770 T6765 acomp sufficient,is
R4649 T6771 T6770 prep for,sufficient
R4650 T6772 T6771 pobj activation,for
R4651 T6773 T6774 punct (,13
R4652 T6774 T6765 parataxis 13,is
R4653 T6775 T6774 punct ),13
R4654 T6776 T6750 punct .,displaced
R4655 T6778 T6779 advmod However,decreased
R4656 T6780 T6779 punct ", ",decreased
R4657 T6781 T6782 det the,efficiency
R4658 T6782 T6779 nsubj efficiency,decreased
R4659 T6783 T6782 prep of,efficiency
R4660 T6784 T6785 det the,displacement
R4661 T6785 T6783 pobj displacement,of
R4662 T6786 T6779 advmod significantly,decreased
R4663 T6787 T6788 mark as,dropped
R4664 T6788 T6779 advcl dropped,decreased
R4665 T6789 T6790 det the,content
R4666 T6790 T6788 nsubj content,dropped
R4667 T6791 T6790 compound thymine,content
R4668 T6792 T6790 prep of,content
R4669 T6793 T6794 det the,tail
R4670 T6794 T6792 pobj tail,of
R4671 T6795 T6794 nummod 3,tail
R4672 T6796 T6795 punct ′,3
R4673 T6797 T6794 punct -,tail
R4674 T6798 T6788 prep to,dropped
R4675 T6799 T6800 nummod 33,%
R4676 T6800 T6798 pobj %,to
R4677 T6801 T6788 punct ", ",dropped
R4678 T6802 T6788 prep as,dropped
R4679 T6803 T6802 prep in,as
R4680 T6804 T6803 pobj TAA17,in
R4681 T6805 T6804 cc or,TAA17
R4682 T6806 T6804 conj TCC17,TAA17
R4683 T6807 T6808 punct (,6B
R4684 T6808 T6788 parataxis 6B,dropped
R4685 T6809 T6808 compound Figure,6B
R4686 T6810 T6808 cc and,6B
R4687 T6811 T6808 conj C,6B
R4688 T6812 T6808 punct ),6B
R4689 T6813 T6779 punct .,decreased
R4690 T6815 T6816 advmod Thus,be
R4691 T6817 T6816 punct ", ",be
R4692 T6818 T6819 det the,content
R4693 T6819 T6816 nsubj content,be
R4694 T6820 T6819 amod minimal,content
R4695 T6821 T6819 compound thymine,content
R4696 T6822 T6819 acl required,content
R4697 T6823 T6822 prep for,required
R4698 T6824 T6823 pobj activation,for
R4699 T6825 T6824 prep of,activation
R4700 T6826 T6827 det the,helicase
R4701 T6827 T6825 pobj helicase,of
R4702 T6828 T6827 compound Mcm,helicase
R4703 T6829 T6816 aux may,be
R4704 T6830 T6816 advmod somewhere,be
R4705 T6831 T6830 prep between,somewhere
R4706 T6832 T6833 nummod 33,%
R4707 T6833 T6831 pobj %,between
R4708 T6834 T6832 cc and,33
R4709 T6835 T6832 conj 50,33
R4710 T6836 T6816 punct .,be
R4711 T7008 T7009 compound DUE,sequences
R4712 T7009 T7010 nsubj sequences,activate
R4713 T7011 T7009 prep from,sequences
R4714 T7012 T7013 det the,origin
R4715 T7013 T7011 pobj origin,from
R4716 T7014 T7015 compound c,myc
R4717 T7015 T7013 compound myc,origin
R4718 T7016 T7015 punct -,myc
R4719 T7017 T7018 compound Mcm,helicase
R4720 T7018 T7010 dobj helicase,activate
R4721 T7020 T7021 poss Our,studies
R4722 T7021 T7023 nsubj studies,shown
R4723 T7022 T7021 amod previous,studies
R4724 T7024 T7023 aux have,shown
R4725 T7025 T7026 mark that,serve
R4726 T7026 T7023 ccomp serve,shown
R4727 T7027 T7028 det the,sequences
R4728 T7028 T7026 nsubj sequences,serve
R4729 T7029 T7028 acl containing,sequences
R4730 T7030 T7031 amod periodic,tracts
R4731 T7031 T7029 dobj tracts,containing
R4732 T7032 T7033 punct (,n
R4733 T7033 T7031 compound n,tracts
R4734 T7034 T7033 nmod dT,n
R4735 T7035 T7033 punct ),n
R4736 T7036 T7031 acl derived,tracts
R4737 T7037 T7036 prep from,derived
R4738 T7038 T7039 det the,origin
R4739 T7039 T7037 pobj origin,from
R4740 T7040 T7039 amod human,origin
R4741 T7041 T7042 compound lamin,B2
R4742 T7042 T7039 compound B2,origin
R4743 T7043 T7044 punct (,content
R4744 T7044 T7039 parataxis content,origin
R4745 T7045 T7046 nummod 48,%
R4746 T7046 T7044 compound %,content
R4747 T7047 T7044 compound thymine,content
R4748 T7048 T7044 punct ),content
R4749 T7049 T7026 aux can,serve
R4750 T7050 T7026 prep as,serve
R4751 T7051 T7052 det an,activator
R4752 T7052 T7050 pobj activator,as
R4753 T7053 T7052 amod efficient,activator
R4754 T7054 T7052 prep for,activator
R4755 T7055 T7056 det the,helicase
R4756 T7056 T7054 pobj helicase,for
R4757 T7057 T7056 compound Mcm,helicase
R4758 T7058 T7026 prep on,serve
R4759 T7059 T7060 det a,bubble
R4760 T7060 T7058 pobj bubble,on
R4761 T7061 T7023 punct ", ",shown
R4762 T7062 T7023 cc and,shown
R4763 T7063 T7064 nsubj replacement,abolished
R4764 T7064 T7023 conj abolished,shown
R4765 T7065 T7063 prep of,replacement
R4766 T7066 T7065 pobj thymines,of
R4767 T7067 T7063 prep with,replacement
R4768 T7068 T7067 pobj guanines,with
R4769 T7069 T7070 det the,activation
R4770 T7070 T7064 dobj activation,abolished
R4771 T7071 T7070 compound helicase,activation
R4772 T7072 T7073 punct (,28
R4773 T7073 T7064 parataxis 28,abolished
R4774 T7074 T7073 nummod 13,28
R4775 T7075 T7073 punct ",",28
R4776 T7076 T7073 punct ),28
R4777 T7077 T7064 punct .,abolished
R4778 T7079 T7080 prep In,constructed
R4779 T7081 T7079 pobj order,In
R4780 T7082 T7083 aux to,examine
R4781 T7083 T7081 acl examine,order
R4782 T7084 T7085 amod other,origins
R4783 T7085 T7083 dobj origins,examine
R4784 T7086 T7085 amod natural,origins
R4785 T7087 T7085 compound replication,origins
R4786 T7088 T7085 prep with,origins
R4787 T7089 T7090 amod different,contents
R4788 T7090 T7088 pobj contents,with
R4789 T7091 T7090 compound thymine,contents
R4790 T7092 T7083 prep for,examine
R4791 T7093 T7094 det the,ability
R4792 T7094 T7092 pobj ability,for
R4793 T7095 T7096 aux to,activate
R4794 T7096 T7094 acl activate,ability
R4795 T7097 T7098 compound Mcm,helicase
R4796 T7098 T7096 dobj helicase,activate
R4797 T7099 T7096 prep on,activate
R4798 T7100 T7101 det a,substrate
R4799 T7101 T7099 pobj substrate,on
R4800 T7102 T7101 compound bubble,substrate
R4801 T7103 T7080 punct ", ",constructed
R4802 T7104 T7080 nsubj we,constructed
R4803 T7105 T7106 amod new,substrates
R4804 T7106 T7080 dobj substrates,constructed
R4805 T7107 T7106 compound bubble,substrates
R4806 T7108 T7106 punct ", ",substrates
R4807 T7109 T7110 compound Bub82,myc
R4808 T7110 T7106 appos myc,substrates
R4809 T7111 T7110 punct /,myc
R4810 T7112 T7110 compound c,myc
R4811 T7113 T7110 punct -,myc
R4812 T7114 T7106 punct ", ",substrates
R4813 T7115 T7106 acl containing,substrates
R4814 T7116 T7115 dobj sequences,containing
R4815 T7117 T7116 acl derived,sequences
R4816 T7118 T7117 prep from,derived
R4817 T7119 T7120 det the,region
R4818 T7120 T7118 pobj region,from
R4819 T7121 T7120 nmod DUE,region
R4820 T7122 T7121 punct (,DUE
R4821 T7123 T7124 compound DNA,element
R4822 T7124 T7121 appos element,DUE
R4823 T7125 T7124 compound unwinding,element
R4824 T7126 T7120 punct ),region
R4825 T7127 T7120 prep of,region
R4826 T7128 T7129 det the,origin
R4827 T7129 T7127 pobj origin,of
R4828 T7130 T7129 amod human,origin
R4829 T7131 T7132 compound c,myc
R4830 T7132 T7129 compound myc,origin
R4831 T7133 T7132 punct -,myc
R4832 T7134 T7135 dep which,is
R4833 T7135 T7120 relcl is,region
R4834 T7136 T7135 acomp essential,is
R4835 T7137 T7136 prep for,essential
R4836 T7138 T7139 compound c,myc
R4837 T7139 T7141 compound myc,activity
R4838 T7140 T7139 punct -,myc
R4839 T7141 T7137 pobj activity,for
R4840 T7142 T7141 compound replicator,activity
R4841 T7143 T7144 punct (,30
R4842 T7144 T7135 parataxis 30,is
R4843 T7145 T7144 nummod 29,30
R4844 T7146 T7144 punct ",",30
R4845 T7147 T7144 punct ),30
R4846 T7148 T7080 punct .,constructed
R4847 T7150 T7151 det The,segment
R4848 T7151 T7153 nsubj segment,contains
R4849 T7152 T7151 amod unpaired,segment
R4850 T7154 T7151 prep in,segment
R4851 T7155 T7156 compound Bub82,DUE
R4852 T7156 T7154 pobj DUE,in
R4853 T7157 T7156 punct /,DUE
R4854 T7158 T7159 compound c,myc
R4855 T7159 T7156 compound myc,DUE
R4856 T7160 T7159 punct -,myc
R4857 T7161 T7156 punct /,DUE
R4858 T7162 T7163 nummod one,strand
R4859 T7163 T7153 dobj strand,contains
R4860 T7164 T7163 prep of,strand
R4861 T7165 T7164 pobj DUE,of
R4862 T7166 T7153 cc and,contains
R4863 T7167 T7168 nsubj that,contains
R4864 T7168 T7153 conj contains,contains
R4865 T7169 T7167 prep in,that
R4866 T7170 T7171 compound Bub82,C
R4867 T7171 T7169 pobj C,in
R4868 T7172 T7171 punct /,C
R4869 T7173 T7174 compound c,myc
R4870 T7174 T7171 compound myc,C
R4871 T7175 T7174 punct -,myc
R4872 T7176 T7171 punct /,C
R4873 T7177 T7171 compound DUE,C
R4874 T7178 T7171 punct -,C
R4875 T7179 T7180 det another,strand
R4876 T7180 T7168 dobj strand,contains
R4877 T7181 T7168 punct .,contains
R4878 T7183 T7184 det This,DUE
R4879 T7184 T7185 nsubjpass DUE,believed
R4880 T7186 T7185 auxpass is,believed
R4881 T7187 T7188 aux to,coincide
R4882 T7188 T7185 xcomp coincide,believed
R4883 T7189 T7188 prep with,coincide
R4884 T7190 T7191 det the,region
R4885 T7191 T7189 pobj region,with
R4886 T7192 T7193 advmod initially,unwound
R4887 T7193 T7191 amod unwound,region
R4888 T7194 T7191 prep of,region
R4889 T7195 T7196 det the,origin
R4890 T7196 T7194 pobj origin,of
R4891 T7197 T7198 compound c,myc
R4892 T7198 T7196 compound myc,origin
R4893 T7199 T7198 punct -,myc
R4894 T7200 T7201 punct (,29
R4895 T7201 T7188 parataxis 29,coincide
R4896 T7202 T7201 punct ),29
R4897 T7203 T7185 punct ", ",believed
R4898 T7204 T7185 cc and,believed
R4899 T7205 T7206 poss its,deletion
R4900 T7206 T7207 nsubj deletion,reduced
R4901 T7207 T7185 conj reduced,believed
R4902 T7208 T7207 advmod substantially,reduced
R4903 T7209 T7210 det the,activity
R4904 T7210 T7207 dobj activity,reduced
R4905 T7211 T7210 compound replicator,activity
R4906 T7212 T7213 punct (,30
R4907 T7213 T7207 parataxis 30,reduced
R4908 T7214 T7213 punct ),30
R4909 T7215 T7207 punct .,reduced
R4910 T7217 T7218 nsubj Mcm4,unwound
R4911 T7219 T7217 punct /,Mcm4
R4912 T7220 T7217 nummod 6,Mcm4
R4913 T7221 T7217 punct /,Mcm4
R4914 T7222 T7217 nummod 7,Mcm4
R4915 T7223 T7224 compound Bub82,B2
R4916 T7224 T7218 dobj B2,unwound
R4917 T7225 T7224 punct /,B2
R4918 T7226 T7224 compound lamin,B2
R4919 T7227 T7228 punct (,%
R4920 T7228 T7224 parataxis %,B2
R4921 T7229 T7228 nmod thymine,%
R4922 T7230 T7228 nummod 48,%
R4923 T7231 T7228 punct ),%
R4924 T7232 T7224 punct ", ",B2
R4925 T7233 T7234 compound Bub82,DUE
R4926 T7234 T7224 conj DUE,B2
R4927 T7235 T7234 punct /,DUE
R4928 T7236 T7237 compound c,myc
R4929 T7237 T7234 compound myc,DUE
R4930 T7238 T7237 punct -,myc
R4931 T7239 T7234 punct /,DUE
R4932 T7240 T7241 punct (,%
R4933 T7241 T7234 parataxis %,DUE
R4934 T7242 T7241 nummod 37,%
R4935 T7243 T7241 punct ),%
R4936 T7244 T7234 cc and,DUE
R4937 T7245 T7246 compound Bub82,C
R4938 T7246 T7234 conj C,DUE
R4939 T7247 T7246 punct /,C
R4940 T7248 T7249 compound c,myc
R4941 T7249 T7246 compound myc,C
R4942 T7250 T7249 punct -,myc
R4943 T7251 T7246 punct /,C
R4944 T7252 T7246 compound DUE,C
R4945 T7253 T7246 punct -,C
R4946 T7254 T7255 punct (,%
R4947 T7255 T7246 parataxis %,C
R4948 T7256 T7255 nummod 39,%
R4949 T7257 T7255 punct ),%
R4950 T7258 T7218 prep with,unwound
R4951 T7259 T7260 amod similar,efficiency
R4952 T7260 T7258 pobj efficiency,with
R4953 T7261 T7262 punct (,7A
R4954 T7262 T7260 parataxis 7A,efficiency
R4955 T7263 T7262 compound Figure,7A
R4956 T7264 T7262 punct ),7A
R4957 T7265 T7218 punct ", ",unwound
R4958 T7266 T7218 advcl indicating,unwound
R4959 T7267 T7268 mark that,serve
R4960 T7268 T7266 ccomp serve,indicating
R4961 T7269 T7270 det the,sequences
R4962 T7270 T7268 nsubj sequences,serve
R4963 T7271 T7270 prep from,sequences
R4964 T7272 T7273 det the,origin
R4965 T7273 T7271 pobj origin,from
R4966 T7274 T7275 compound c,myc
R4967 T7275 T7273 compound myc,origin
R4968 T7276 T7275 punct -,myc
R4969 T7277 T7268 advmod also,serve
R4970 T7278 T7268 aux can,serve
R4971 T7279 T7268 prep as,serve
R4972 T7280 T7281 amod efficient,activators
R4973 T7281 T7279 pobj activators,as
R4974 T7282 T7281 prep of,activators
R4975 T7283 T7284 det the,helicase
R4976 T7284 T7282 pobj helicase,of
R4977 T7285 T7284 compound Mcm,helicase
R4978 T7286 T7218 punct .,unwound
R4979 T7288 T7289 det This,result
R4980 T7289 T7290 nsubj result,indicates
R4981 T7291 T7290 advmod also,indicates
R4982 T7292 T7293 mark that,activate
R4983 T7293 T7290 ccomp activate,indicates
R4984 T7294 T7293 nsubj sequences,activate
R4985 T7295 T7294 prep with,sequences
R4986 T7296 T7297 nummod 37,%
R4987 T7297 T7298 compound %,content
R4988 T7298 T7295 pobj content,with
R4989 T7299 T7298 compound thymine,content
R4990 T7300 T7293 aux can,activate
R4991 T7301 T7293 dobj Mcm4,activate
R4992 T7302 T7301 punct /,Mcm4
R4993 T7303 T7301 nummod 6,Mcm4
R4994 T7304 T7301 punct /,Mcm4
R4995 T7305 T7301 nummod 7,Mcm4
R4996 T7306 T7307 aux to,displace
R4997 T7307 T7293 advcl displace,activate
R4998 T7308 T7309 nummod 24,nt
R4999 T7309 T7310 compound nt,duplex
R5000 T7310 T7307 dobj duplex,displace
R5001 T7311 T7307 prep on,displace
R5002 T7312 T7313 det both,sides
R5003 T7313 T7311 pobj sides,on
R5004 T7314 T7307 prep in,displace
R5005 T7315 T7316 det a,substrate
R5006 T7316 T7314 pobj substrate,in
R5007 T7317 T7316 compound bubble,substrate
R5008 T7318 T7293 punct ", ",activate
R5009 T7319 T7293 advcl suggesting,activate
R5010 T7320 T7321 mark that,affect
R5011 T7321 T7319 ccomp affect,suggesting
R5012 T7322 T7323 det the,content
R5013 T7323 T7321 nsubj content,affect
R5014 T7324 T7323 preconj not,content
R5015 T7325 T7324 advmod only,not
R5016 T7326 T7323 compound thymine,content
R5017 T7327 T7323 cc but,content
R5018 T7328 T7327 advmod also,but
R5019 T7329 T7330 det the,context
R5020 T7330 T7323 conj context,content
R5021 T7331 T7330 compound sequence,context
R5022 T7332 T7321 aux may,affect
R5023 T7333 T7334 det the,activation
R5024 T7334 T7321 dobj activation,affect
R5025 T7335 T7336 compound Mcm,helicase
R5026 T7336 T7334 compound helicase,activation
R5027 T7337 T7290 punct .,indicates
R5028 T7339 T7340 prep In,bound
R5029 T7341 T7342 compound gel,shift
R5030 T7342 T7343 compound shift,assays
R5031 T7343 T7339 pobj assays,In
R5032 T7344 T7340 punct ", ",bound
R5033 T7345 T7340 nsubj MCM4,bound
R5034 T7346 T7345 punct /,MCM4
R5035 T7347 T7345 nummod 6,MCM4
R5036 T7348 T7345 punct /,MCM4
R5037 T7349 T7345 nummod 7,MCM4
R5038 T7350 T7340 prep to,bound
R5039 T7351 T7352 predet all,bubbles
R5040 T7352 T7350 pobj bubbles,to
R5041 T7353 T7352 det the,bubbles
R5042 T7354 T7352 nummod three,bubbles
R5043 T7355 T7340 punct ", ",bound
R5044 T7356 T7357 mark although,is
R5045 T7357 T7340 advcl is,bound
R5046 T7358 T7359 det the,affinity
R5047 T7359 T7357 nsubj affinity,is
R5048 T7360 T7359 prep to,affinity
R5049 T7361 T7362 compound Bub82,DUE
R5050 T7362 T7360 pobj DUE,to
R5051 T7363 T7362 punct /,DUE
R5052 T7364 T7365 compound c,myc
R5053 T7365 T7362 compound myc,DUE
R5054 T7366 T7365 punct -,myc
R5055 T7367 T7362 punct /,DUE
R5056 T7368 T7360 cc and,to
R5057 T7369 T7360 conj to,to
R5058 T7370 T7371 compound Bub82,C
R5059 T7371 T7369 pobj C,to
R5060 T7372 T7371 punct /,C
R5061 T7373 T7374 compound c,myc
R5062 T7374 T7371 compound myc,C
R5063 T7375 T7374 punct -,myc
R5064 T7376 T7371 punct /,C
R5065 T7377 T7371 compound DUE,C
R5066 T7378 T7371 punct -,C
R5067 T7379 T7380 advmod slightly,lower
R5068 T7380 T7357 acomp lower,is
R5069 T7381 T7380 prep than,lower
R5070 T7382 T7381 pobj that,than
R5071 T7383 T7382 prep to,that
R5072 T7384 T7385 nmod Bub,B2
R5073 T7385 T7383 pobj B2,to
R5074 T7386 T7385 punct -,B2
R5075 T7387 T7385 nummod 82,B2
R5076 T7388 T7385 punct /,B2
R5077 T7389 T7385 compound lamin,B2
R5078 T7390 T7391 punct (,7B
R5079 T7391 T7357 parataxis 7B,is
R5080 T7392 T7391 compound Figure,7B
R5081 T7393 T7391 punct ),7B
R5082 T7394 T7340 punct .,bound
R5083 T7396 T7397 advmod Therefore,correlate
R5084 T7398 T7397 punct ", ",correlate
R5085 T7399 T7400 nmod helicase,activities
R5086 T7400 T7397 nsubj activities,correlate
R5087 T7401 T7399 cc and,helicase
R5088 T7402 T7403 compound DNA,binding
R5089 T7403 T7399 conj binding,helicase
R5090 T7404 T7397 aux do,correlate
R5091 T7405 T7397 neg not,correlate
R5092 T7406 T7397 advmod necessarily,correlate
R5093 T7407 T7397 prep with,correlate
R5094 T7408 T7409 det each,other
R5095 T7409 T7407 pobj other,with
R5096 T7410 T7397 punct .,correlate
R5097 T7412 T7413 nsubjpass This,indicated
R5098 T7414 T7413 auxpass was,indicated
R5099 T7415 T7413 advmod also,indicated
R5100 T7416 T7413 agent by,indicated
R5101 T7417 T7418 poss our,results
R5102 T7418 T7416 pobj results,by
R5103 T7419 T7418 amod previous,results
R5104 T7420 T7421 mark that,bind
R5105 T7421 T7418 acl bind,results
R5106 T7422 T7423 nmod guanine,stretches
R5107 T7423 T7421 nsubj stretches,bind
R5108 T7424 T7422 cc and,guanine
R5109 T7425 T7422 conj cytosine,guanine
R5110 T7426 T7421 aux can,bind
R5111 T7427 T7421 prep to,bind
R5112 T7428 T7427 pobj Mcm,to
R5113 T7429 T7421 cc but,bind
R5114 T7430 T7431 aux can,activate
R5115 T7431 T7421 conj activate,bind
R5116 T7432 T7431 neg not,activate
R5117 T7433 T7434 det the,helicase
R5118 T7434 T7431 dobj helicase,activate
R5119 T7435 T7436 punct (,13
R5120 T7436 T7431 parataxis 13,activate
R5121 T7437 T7436 punct ),13
R5122 T7438 T7413 punct .,indicated
R5124 T7722 T7723 compound DNA,unwinding
R5125 T7723 T7724 nsubjpass unwinding,inhibited
R5126 T7725 T7723 prep by,unwinding
R5127 T7726 T7725 pobj Mcm4,by
R5128 T7727 T7726 punct /,Mcm4
R5129 T7728 T7726 nummod 6,Mcm4
R5130 T7729 T7726 punct /,Mcm4
R5131 T7730 T7726 nummod 7,Mcm4
R5132 T7731 T7724 auxpass is,inhibited
R5133 T7732 T7724 agent by,inhibited
R5134 T7733 T7734 det the,sequences
R5135 T7734 T7732 pobj sequences,by
R5136 T7735 T7736 npadvmod GC,rich
R5137 T7736 T7734 amod rich,sequences
R5138 T7737 T7736 punct -,rich
R5139 T7738 T7734 prep on,sequences
R5140 T7739 T7740 det the,segment
R5141 T7740 T7738 pobj segment,on
R5142 T7741 T7740 compound duplex,segment
R5143 T7743 T7744 poss Our,results
R5144 T7744 T7745 nsubj results,indicate
R5145 T7746 T7747 mark that,required
R5146 T7747 T7745 ccomp required,indicate
R5147 T7748 T7749 npadvmod thymine,rich
R5148 T7749 T7751 amod rich,DNA
R5149 T7750 T7749 punct -,rich
R5150 T7751 T7747 nsubjpass DNA,required
R5151 T7752 T7753 amod single,stranded
R5152 T7753 T7751 amod stranded,DNA
R5153 T7754 T7753 punct -,stranded
R5154 T7755 T7747 auxpass is,required
R5155 T7756 T7747 prep for,required
R5156 T7757 T7758 amod initial,loading
R5157 T7758 T7756 pobj loading,for
R5158 T7759 T7758 cc and,loading
R5159 T7760 T7758 conj activation,loading
R5160 T7761 T7758 prep of,loading
R5161 T7762 T7763 det the,helicase
R5162 T7763 T7761 pobj helicase,of
R5163 T7764 T7763 compound Mcm,helicase
R5164 T7765 T7745 punct .,indicate
R5165 T7767 T7768 advmod However,known
R5166 T7769 T7768 punct ", ",known
R5167 T7770 T7768 nsubjpass it,known
R5168 T7771 T7768 auxpass is,known
R5169 T7772 T7768 neg not,known
R5170 T7773 T7774 mark whether,required
R5171 T7774 T7768 ccomp required,known
R5172 T7775 T7776 compound thymine,sequences
R5173 T7776 T7774 nsubjpass sequences,required
R5174 T7777 T7774 auxpass are,required
R5175 T7778 T7774 prep for,required
R5176 T7779 T7780 amod processive,unwinding
R5177 T7780 T7778 pobj unwinding,for
R5178 T7781 T7780 prep of,unwinding
R5179 T7782 T7783 compound duplex,DNA
R5180 T7783 T7781 pobj DNA,of
R5181 T7784 T7768 punct .,known
R5182 T7786 T7787 advmod Therefore,examined
R5183 T7788 T7787 punct ", ",examined
R5184 T7789 T7787 nsubj we,examined
R5185 T7790 T7787 aux have,examined
R5186 T7791 T7792 mark whether,affects
R5187 T7792 T7787 ccomp affects,examined
R5188 T7793 T7794 det the,composition
R5189 T7794 T7792 nsubj composition,affects
R5190 T7795 T7794 compound nucleotide,composition
R5191 T7796 T7794 prep of,composition
R5192 T7797 T7798 det the,region
R5193 T7798 T7796 pobj region,of
R5194 T7799 T7798 compound duplex,region
R5195 T7800 T7801 poss its,activity
R5196 T7801 T7792 dobj activity,affects
R5197 T7802 T7801 compound unwinding,activity
R5198 T7803 T7787 punct .,examined
R5199 T7805 T7806 aux To,address
R5200 T7806 T7807 advcl address,constructed
R5201 T7808 T7809 det this,issue
R5202 T7809 T7806 dobj issue,address
R5203 T7810 T7807 punct ", ",constructed
R5204 T7811 T7807 nsubj we,constructed
R5205 T7812 T7813 det a,series
R5206 T7813 T7807 dobj series,constructed
R5207 T7814 T7813 prep of,series
R5208 T7815 T7816 npadvmod T,tailed
R5209 T7816 T7818 amod tailed,structures
R5210 T7817 T7816 punct -,tailed
R5211 T7818 T7814 pobj structures,of
R5212 T7819 T7820 compound Y,fork
R5213 T7820 T7818 compound fork,structures
R5214 T7821 T7820 punct -,fork
R5215 T7822 T7818 punct (,structures
R5216 T7823 T7824 compound T,fork
R5217 T7824 T7818 appos fork,structures
R5218 T7825 T7824 punct -,fork
R5219 T7826 T7818 punct ),structures
R5220 T7827 T7818 acl containing,structures
R5221 T7828 T7829 amod various,sequences
R5222 T7829 T7827 dobj sequences,containing
R5223 T7830 T7807 prep in,constructed
R5224 T7831 T7832 det the,segment
R5225 T7832 T7830 pobj segment,in
R5226 T7833 T7832 compound duplex,segment
R5227 T7834 T7807 punct .,constructed
R5228 T7836 T7837 nsubj They,carried
R5229 T7838 T7839 amod varied,contents
R5230 T7839 T7837 dobj contents,carried
R5231 T7840 T7839 prep of,contents
R5232 T7841 T7842 compound cytosine,residues
R5233 T7842 T7840 pobj residues,of
R5234 T7843 T7837 prep on,carried
R5235 T7844 T7845 det the,strand
R5236 T7845 T7843 pobj strand,on
R5237 T7846 T7847 nummod 3,tail
R5238 T7847 T7845 compound tail,strand
R5239 T7848 T7846 punct ′,3
R5240 T7849 T7847 punct -,tail
R5241 T7850 T7837 punct .,carried
R5242 T7852 T7853 prep In,bound
R5243 T7854 T7855 compound gel,shift
R5244 T7855 T7856 compound shift,assays
R5245 T7856 T7852 pobj assays,In
R5246 T7857 T7853 punct ", ",bound
R5247 T7858 T7853 nsubj Mcm4,bound
R5248 T7859 T7858 punct /,Mcm4
R5249 T7860 T7858 nummod 6,Mcm4
R5250 T7861 T7858 punct /,Mcm4
R5251 T7862 T7858 nummod 7,Mcm4
R5252 T7863 T7853 prep to,bound
R5253 T7864 T7865 det these,substrates
R5254 T7865 T7863 pobj substrates,to
R5255 T7866 T7867 compound Y,fork
R5256 T7867 T7865 compound fork,substrates
R5257 T7868 T7867 punct -,fork
R5258 T7869 T7853 prep with,bound
R5259 T7870 T7871 amod identical,affinity
R5260 T7871 T7869 pobj affinity,with
R5261 T7872 T7873 punct (,8A
R5262 T7873 T7871 parataxis 8A,affinity
R5263 T7874 T7873 compound Figure,8A
R5264 T7875 T7873 punct ),8A
R5265 T7876 T7853 punct ", ",bound
R5266 T7877 T7853 advcl consistent,bound
R5267 T7878 T7877 prep with,consistent
R5268 T7879 T7880 det the,notion
R5269 T7880 T7878 pobj notion,with
R5270 T7881 T7882 mark that,binds
R5271 T7882 T7880 acl binds,notion
R5272 T7883 T7884 det the,Mcm4
R5273 T7884 T7882 nsubj Mcm4,binds
R5274 T7885 T7884 punct /,Mcm4
R5275 T7886 T7884 nummod 6,Mcm4
R5276 T7887 T7884 punct /,Mcm4
R5277 T7888 T7884 nummod 7,Mcm4
R5278 T7889 T7882 prep to,binds
R5279 T7890 T7891 amod single,stranded
R5280 T7891 T7893 amod stranded,tails
R5281 T7892 T7891 punct -,stranded
R5282 T7893 T7889 pobj tails,to
R5283 T7894 T7853 punct .,bound
R5284 T7896 T7897 advmod However,displaced
R5285 T7898 T7897 punct ", ",displaced
R5286 T7899 T7897 prep in,displaced
R5287 T7900 T7901 compound DNA,helicase
R5288 T7901 T7902 compound helicase,assays
R5289 T7902 T7899 pobj assays,in
R5290 T7903 T7897 punct ", ",displaced
R5291 T7904 T7905 compound T,fork
R5292 T7905 T7897 nsubjpass fork,displaced
R5293 T7906 T7905 punct -,fork
R5294 T7907 T7905 punct /,fork
R5295 T7908 T7909 punct (,G
R5296 T7909 T7905 appos G,fork
R5297 T7910 T7909 nmod C,G
R5298 T7911 T7909 punct :,G
R5299 T7912 T7909 punct ),G
R5300 T7913 T7909 nummod 49,G
R5301 T7914 T7897 auxpass was,displaced
R5302 T7915 T7897 advmod hardly,displaced
R5303 T7916 T7897 agent by,displaced
R5304 T7917 T7916 pobj Mcm4,by
R5305 T7918 T7917 punct /,Mcm4
R5306 T7919 T7917 nummod 6,Mcm4
R5307 T7920 T7917 punct /,Mcm4
R5308 T7921 T7917 nummod 7,Mcm4
R5309 T7922 T7897 punct ", ",displaced
R5310 T7923 T7897 cc but,displaced
R5311 T7924 T7925 auxpass was,displaced
R5312 T7925 T7897 conj displaced,displaced
R5313 T7926 T7925 advmod readily,displaced
R5314 T7927 T7925 agent by,displaced
R5315 T7928 T7929 compound SV40,helicase
R5316 T7929 T7927 pobj helicase,by
R5317 T7930 T7931 compound T,antigen
R5318 T7931 T7929 compound antigen,helicase
R5319 T7932 T7931 punct -,antigen
R5320 T7933 T7929 compound DNA,helicase
R5321 T7934 T7935 punct (,8B
R5322 T7935 T7925 parataxis 8B,displaced
R5323 T7936 T7935 compound Figure,8B
R5324 T7937 T7935 punct ),8B
R5325 T7938 T7897 punct .,displaced
R5326 T7940 T7941 advmod When,inserted
R5327 T7941 T7946 advcl inserted,increased
R5328 T7942 T7941 nsubjpass thymine,inserted
R5329 T7943 T7942 cc or,thymine
R5330 T7944 T7942 conj adenine,thymine
R5331 T7945 T7941 auxpass is,inserted
R5332 T7947 T7941 prep as,inserted
R5333 T7948 T7949 det every,nucleotide
R5334 T7949 T7947 pobj nucleotide,as
R5335 T7950 T7949 amod third,nucleotide
R5336 T7951 T7952 punct (,repeats
R5337 T7952 T7949 parataxis repeats,nucleotide
R5338 T7953 T7952 prep of,repeats
R5339 T7954 T7953 pobj CCT,of
R5340 T7955 T7954 cc or,CCT
R5341 T7956 T7954 conj CCA,CCT
R5342 T7957 T7952 punct ),repeats
R5343 T7958 T7946 punct ", ",increased
R5344 T7959 T7960 det the,extent
R5345 T7960 T7946 nsubj extent,increased
R5346 T7961 T7960 prep of,extent
R5347 T7962 T7961 pobj unwinding,of
R5348 T7963 T7964 punct (,GGA
R5349 T7964 T7946 dobj GGA,increased
R5350 T7965 T7966 nmod T,fork
R5351 T7966 T7964 nmod fork,GGA
R5352 T7967 T7966 punct -,fork
R5353 T7968 T7964 punct /,GGA
R5354 T7969 T7964 punct (,GGA
R5355 T7970 T7964 nmod CCT,GGA
R5356 T7971 T7964 punct :,GGA
R5357 T7972 T7964 punct ),GGA
R5358 T7973 T7964 nummod 16,GGA
R5359 T7974 T7964 cc and,GGA
R5360 T7975 T7976 nmod T,fork
R5361 T7976 T7978 nmod fork,GGT
R5362 T7977 T7976 punct -,fork
R5363 T7978 T7964 conj GGT,GGA
R5364 T7979 T7978 punct /,GGT
R5365 T7980 T7978 punct (,GGT
R5366 T7981 T7978 nmod CCA,GGT
R5367 T7982 T7978 punct :,GGT
R5368 T7983 T7978 punct ),GGT
R5369 T7984 T7978 nummod 16,GGT
R5370 T7985 T7946 punct ),increased
R5371 T7986 T7946 punct .,increased
R5372 T7988 T7989 det The,efficiency
R5373 T7989 T7990 nsubjpass efficiency,correlated
R5374 T7991 T7989 prep of,efficiency
R5375 T7992 T7991 pobj unwinding,of
R5376 T7993 T7990 auxpass is,correlated
R5377 T7994 T7990 advmod roughly,correlated
R5378 T7995 T7990 prep with,correlated
R5379 T7996 T7997 det the,content
R5380 T7997 T7995 pobj content,with
R5381 T7998 T7997 prep of,content
R5382 T7999 T8000 compound GC,pairs
R5383 T8000 T7998 pobj pairs,of
R5384 T8001 T8000 prep in,pairs
R5385 T8002 T8003 det the,segment
R5386 T8003 T8001 pobj segment,in
R5387 T8004 T8003 compound duplex,segment
R5388 T8005 T8006 punct [,GGTT
R5389 T8006 T8000 appos GGTT,pairs
R5390 T8007 T8008 nmod T,fork
R5391 T8008 T8006 nmod fork,GGTT
R5392 T8009 T8008 punct -,fork
R5393 T8010 T8006 punct /,GGTT
R5394 T8011 T8006 punct (,GGTT
R5395 T8012 T8006 nmod CCAA,GGTT
R5396 T8013 T8006 punct :,GGTT
R5397 T8014 T8006 punct ),GGTT
R5398 T8015 T8006 nummod 12,GGTT
R5399 T8016 T8006 punct ", ",GGTT
R5400 T8017 T8018 nmod T,fork
R5401 T8018 T8020 nmod fork,GGAA
R5402 T8019 T8018 punct -,fork
R5403 T8020 T8006 conj GGAA,GGTT
R5404 T8021 T8020 punct /,GGAA
R5405 T8022 T8020 punct (,GGAA
R5406 T8023 T8020 nmod CCTT,GGAA
R5407 T8024 T8020 punct :,GGAA
R5408 T8025 T8020 punct ),GGAA
R5409 T8026 T8020 nummod 12,GGAA
R5410 T8027 T8020 punct ", ",GGAA
R5411 T8028 T8029 nmod T,fork
R5412 T8029 T8031 nmod fork,GTTT
R5413 T8030 T8029 punct -,fork
R5414 T8031 T8020 conj GTTT,GGAA
R5415 T8032 T8031 punct /,GTTT
R5416 T8033 T8031 punct (,GTTT
R5417 T8034 T8031 nmod CAAA,GTTT
R5418 T8035 T8031 punct :,GTTT
R5419 T8036 T8031 punct ),GTTT
R5420 T8037 T8031 nummod 12,GTTT
R5421 T8038 T8031 cc and,GTTT
R5422 T8039 T8040 nmod T,fork
R5423 T8040 T8042 nmod fork,GAAA
R5424 T8041 T8040 punct -,fork
R5425 T8042 T8031 conj GAAA,GTTT
R5426 T8043 T8042 punct /,GAAA
R5427 T8044 T8042 punct (,GAAA
R5428 T8045 T8042 nmod CTTT,GAAA
R5429 T8046 T8042 punct :,GAAA
R5430 T8047 T8042 punct ),GAAA
R5431 T8048 T8042 nummod 12,GAAA
R5432 T8049 T8050 punct ;,8B
R5433 T8050 T7990 parataxis 8B,correlated
R5434 T8051 T8050 compound Figure,8B
R5435 T8052 T8050 punct ],8B
R5436 T8053 T7990 punct .,correlated
R5437 T8055 T8056 nsubj It,appears
R5438 T8057 T8058 mark that,unwound
R5439 T8058 T8056 ccomp unwound,appears
R5440 T8059 T8060 det the,segment
R5441 T8060 T8058 nsubjpass segment,unwound
R5442 T8061 T8060 compound duplex,segment
R5443 T8062 T8060 acl containing,segment
R5444 T8063 T8064 punct <,50
R5445 T8064 T8065 nummod 50,%
R5446 T8065 T8066 compound %,pairs
R5447 T8066 T8062 dobj pairs,containing
R5448 T8067 T8066 compound GC,pairs
R5449 T8068 T8058 auxpass is,unwound
R5450 T8069 T8058 advmod efficiently,unwound
R5451 T8070 T8071 punct (,8C
R5452 T8071 T8058 parataxis 8C,unwound
R5453 T8072 T8071 compound Figure,8C
R5454 T8073 T8071 punct ),8C
R5455 T8074 T8056 punct .,appears
R5456 T8076 T8077 nsubj We,examined
R5457 T8078 T8077 advmod next,examined
R5458 T8079 T8080 det the,effect
R5459 T8080 T8077 dobj effect,examined
R5460 T8081 T8080 prep of,effect
R5461 T8082 T8083 npadvmod GC,rich
R5462 T8083 T8085 amod rich,segments
R5463 T8084 T8083 punct -,rich
R5464 T8085 T8081 pobj segments,of
R5465 T8086 T8080 prep on,effect
R5466 T8087 T8088 det a,DNA
R5467 T8088 T8086 pobj DNA,on
R5468 T8089 T8088 amod partial,DNA
R5469 T8090 T8088 compound heteroduplex,DNA
R5470 T8091 T8088 prep on,DNA
R5471 T8092 T8093 det a,DNA
R5472 T8093 T8091 pobj DNA,on
R5473 T8094 T8095 amod single,stranded
R5474 T8095 T8093 amod stranded,DNA
R5475 T8096 T8095 punct -,stranded
R5476 T8097 T8093 amod circular,DNA
R5477 T8098 T8077 punct .,examined
R5478 T8100 T8101 nsubj We,constructed
R5479 T8102 T8101 aux have,constructed
R5480 T8103 T8104 nummod two,sets
R5481 T8104 T8101 dobj sets,constructed
R5482 T8105 T8104 prep of,sets
R5483 T8106 T8107 npadvmod 5,tailed
R5484 T8107 T8110 amod tailed,substrates
R5485 T8108 T8106 punct ′,5
R5486 T8109 T8107 punct -,tailed
R5487 T8110 T8105 pobj substrates,of
R5488 T8111 T8112 amod partial,heteroduplex
R5489 T8112 T8110 compound heteroduplex,substrates
R5490 T8113 T8110 compound DNA,substrates
R5491 T8114 T8110 acl containing,substrates
R5492 T8115 T8116 compound duplex,regions
R5493 T8116 T8114 dobj regions,containing
R5494 T8117 T8116 prep of,regions
R5495 T8118 T8119 amod variable,lengths
R5496 T8119 T8117 pobj lengths,of
R5497 T8120 T8104 punct ;,sets
R5498 T8121 T8104 appos one,sets
R5499 T8122 T8121 prep on,one
R5500 T8123 T8124 compound M13mp18,vector
R5501 T8124 T8122 pobj vector,on
R5502 T8125 T8121 cc and,one
R5503 T8126 T8127 det the,other
R5504 T8127 T8121 conj other,one
R5505 T8128 T8127 prep on,other
R5506 T8129 T8128 pobj M13mp19,on
R5507 T8130 T8121 acl containing,one
R5508 T8131 T8132 det a,segment
R5509 T8132 T8130 dobj segment,containing
R5510 T8133 T8134 nummod 66,nt
R5511 T8134 T8135 npadvmod nt,long
R5512 T8135 T8132 amod long,segment
R5513 T8136 T8137 npadvmod G,rich
R5514 T8137 T8132 amod rich,segment
R5515 T8138 T8137 punct -,rich
R5516 T8139 T8132 advmod downstream,segment
R5517 T8140 T8139 prep of,downstream
R5518 T8141 T8142 det the,oligonucleotide
R5519 T8142 T8140 pobj oligonucleotide,of
R5520 T8143 T8142 amod hybridizing,oligonucleotide
R5521 T8144 T8101 punct .,constructed
R5522 T8146 T8147 nsubj We,found
R5523 T8148 T8149 mark that,displace
R5524 T8149 T8147 ccomp displace,found
R5525 T8150 T8151 det the,helicase
R5526 T8151 T8149 nsubj helicase,displace
R5527 T8152 T8151 nmod Mcm4,helicase
R5528 T8153 T8152 punct /,Mcm4
R5529 T8154 T8152 nummod 6,Mcm4
R5530 T8155 T8152 punct /,Mcm4
R5531 T8156 T8152 nummod 7,Mcm4
R5532 T8157 T8149 aux can,displace
R5533 T8158 T8159 compound duplex,DNA
R5534 T8159 T8149 dobj DNA,displace
R5535 T8160 T8161 quantmod up,350
R5536 T8161 T8163 nummod 350,nt
R5537 T8162 T8161 quantmod to,350
R5538 T8163 T8164 npadvmod nt,long
R5539 T8164 T8159 amod long,DNA
R5540 T8165 T8149 prep on,displace
R5541 T8166 T8167 poss its,own
R5542 T8167 T8165 pobj own,on
R5543 T8168 T8149 prep on,displace
R5544 T8169 T8170 det the,substrate
R5545 T8170 T8168 pobj substrate,on
R5546 T8171 T8170 amod former,substrate
R5547 T8172 T8173 punct (,8D
R5548 T8173 T8149 parataxis 8D,displace
R5549 T8174 T8173 compound Figure,8D
R5550 T8175 T8173 punct ", ",8D
R5551 T8176 T8173 amod left,8D
R5552 T8177 T8173 punct ),8D
R5553 T8178 T8147 punct ", ",found
R5554 T8179 T8147 advcl consistent,found
R5555 T8180 T8179 prep with,consistent
R5556 T8181 T8182 amod previous,results
R5557 T8182 T8180 pobj results,with
R5558 T8183 T8184 punct (,13
R5559 T8184 T8182 parataxis 13,results
R5560 T8185 T8184 punct ),13
R5561 T8186 T8147 punct .,found
R5562 T8188 T8189 prep In,inhibited
R5563 T8190 T8188 pobj contrast,In
R5564 T8191 T8189 punct ", ",inhibited
R5565 T8192 T8189 nsubjpass displacement,inhibited
R5566 T8193 T8189 auxpass was,inhibited
R5567 T8194 T8189 prep over,inhibited
R5568 T8195 T8196 det the,segments
R5569 T8196 T8194 pobj segments,over
R5570 T8197 T8198 npadvmod GC,rich
R5571 T8198 T8196 amod rich,segments
R5572 T8199 T8198 punct -,rich
R5573 T8200 T8196 prep on,segments
R5574 T8201 T8202 det the,substrate
R5575 T8202 T8200 pobj substrate,on
R5576 T8203 T8202 amod latter,substrate
R5577 T8204 T8205 punct (,panel
R5578 T8205 T8196 parataxis panel,segments
R5579 T8206 T8207 compound Figure,8D
R5580 T8207 T8205 dep 8D,panel
R5581 T8208 T8205 punct ", ",panel
R5582 T8209 T8205 amod right,panel
R5583 T8210 T8205 punct ),panel
R5584 T8211 T8189 punct ", ",inhibited
R5585 T8212 T8213 mark although,observed
R5586 T8213 T8189 advcl observed,inhibited
R5587 T8214 T8213 nsubjpass displacement,observed
R5588 T8215 T8216 quantmod up,250
R5589 T8216 T8218 nummod 250,nt
R5590 T8217 T8216 quantmod to,250
R5591 T8218 T8214 appos nt,displacement
R5592 T8219 T8218 prep in,nt
R5593 T8220 T8219 pobj length,in
R5594 T8221 T8218 punct ", ",nt
R5595 T8222 T8223 dep albeit,at
R5596 T8223 T8218 prep at,nt
R5597 T8224 T8225 det a,level
R5598 T8225 T8223 pobj level,at
R5599 T8226 T8225 amod reduced,level
R5600 T8227 T8213 punct ", ",observed
R5601 T8228 T8213 auxpass was,observed
R5602 T8229 T8213 prep at,observed
R5603 T8230 T8231 det a,concentration
R5604 T8231 T8229 pobj concentration,at
R5605 T8232 T8231 amod high,concentration
R5606 T8233 T8231 prep of,concentration
R5607 T8234 T8235 nmod Mcm4,complex
R5608 T8235 T8233 pobj complex,of
R5609 T8236 T8234 punct /,Mcm4
R5610 T8237 T8234 nummod 6,Mcm4
R5611 T8238 T8234 punct /,Mcm4
R5612 T8239 T8234 nummod 7,Mcm4
R5613 T8240 T8189 punct .,inhibited
R5614 T8242 T8243 det This,result
R5615 T8243 T8244 nsubj result,is
R5616 T8245 T8244 acomp consistent,is
R5617 T8246 T8245 prep with,consistent
R5618 T8247 T8246 pobj that,with
R5619 T8248 T8247 prep on,that
R5620 T8249 T8250 compound Y,fork
R5621 T8250 T8248 pobj fork,on
R5622 T8251 T8250 punct -,fork
R5623 T8252 T8244 cc and,is
R5624 T8253 T8244 conj indicates,is
R5625 T8254 T8255 mark that,is
R5626 T8255 T8253 ccomp is,indicates
R5627 T8256 T8257 npadvmod GC,rich
R5628 T8257 T8259 amod rich,segment
R5629 T8258 T8257 punct -,rich
R5630 T8259 T8255 nsubj segment,is
R5631 T8260 T8259 compound duplex,segment
R5632 T8261 T8255 acomp inhibitory,is
R5633 T8262 T8261 prep for,inhibitory
R5634 T8263 T8262 pobj unwinding,for
R5635 T8264 T8263 prep by,unwinding
R5636 T8265 T8266 det the,helicase
R5637 T8266 T8264 pobj helicase,by
R5638 T8267 T8266 compound Mcm,helicase
R5639 T8268 T8244 punct .,is
R5640 T8270 T8271 det These,results
R5641 T8271 T8272 nsubj results,indicate
R5642 T8273 T8272 aux may,indicate
R5643 T8274 T8275 mark that,facilitate
R5644 T8275 T8272 ccomp facilitate,indicate
R5645 T8276 T8277 det the,presence
R5646 T8277 T8275 nsubj presence,facilitate
R5647 T8278 T8277 prep of,presence
R5648 T8279 T8280 compound thymine,adenine
R5649 T8280 T8282 compound adenine,pairs
R5650 T8281 T8280 punct –,adenine
R5651 T8282 T8278 pobj pairs,of
R5652 T8283 T8282 prep with,pairs
R5653 T8284 T8285 det a,frequency
R5654 T8285 T8283 pobj frequency,with
R5655 T8286 T8285 amod certain,frequency
R5656 T8287 T8277 prep in,presence
R5657 T8288 T8289 det the,region
R5658 T8289 T8287 pobj region,in
R5659 T8290 T8289 compound duplex,region
R5660 T8291 T8275 aux may,facilitate
R5661 T8292 T8293 amod continuous,unwinding
R5662 T8293 T8275 dobj unwinding,facilitate
R5663 T8294 T8293 prep by,unwinding
R5664 T8295 T8294 pobj Mcm4,by
R5665 T8296 T8295 punct /,Mcm4
R5666 T8297 T8295 nummod 6,Mcm4
R5667 T8298 T8295 punct /,Mcm4
R5668 T8299 T8295 nummod 7,Mcm4
R5669 T8300 T8272 punct .,indicate
R5670 T8302 T8303 advmod Alternatively,is
R5671 T8304 T8303 punct ", ",is
R5672 T8305 T8303 nsubj Mcm4,is
R5673 T8306 T8305 punct /,Mcm4
R5674 T8307 T8305 nummod 6,Mcm4
R5675 T8308 T8305 punct /,Mcm4
R5676 T8309 T8305 nummod 7,Mcm4
R5677 T8310 T8303 neg not,is
R5678 T8311 T8303 acomp efficient,is
R5679 T8312 T8311 advmod enough,efficient
R5680 T8313 T8314 aux to,displace
R5681 T8314 T8311 xcomp displace,efficient
R5682 T8315 T8316 advmod thermodynamically,stable
R5683 T8316 T8317 amod stable,segment
R5684 T8317 T8314 dobj segment,displace
R5685 T8318 T8319 npadvmod GC,paired
R5686 T8319 T8317 amod paired,segment
R5687 T8320 T8319 punct -,paired
R5688 T8321 T8319 npadvmod base,paired
R5689 T8322 T8319 punct -,paired
R5690 T8323 T8303 punct .,is
R5691 T8325 T8326 prep In,designed
R5692 T8327 T8325 pobj order,In
R5693 T8328 T8329 aux to,distinguish
R5694 T8329 T8327 acl distinguish,order
R5695 T8330 T8331 det these,possibilities
R5696 T8331 T8329 dobj possibilities,distinguish
R5697 T8332 T8331 nummod two,possibilities
R5698 T8333 T8326 punct ", ",designed
R5699 T8334 T8326 nsubj we,designed
R5700 T8335 T8336 det a,substrate
R5701 T8336 T8326 dobj substrate,designed
R5702 T8337 T8336 amod new,substrate
R5703 T8338 T8339 compound T,fork
R5704 T8339 T8336 compound fork,substrate
R5705 T8340 T8339 punct -,fork
R5706 T8341 T8336 acl containing,substrate
R5707 T8342 T8343 nmod inosine,residue
R5708 T8343 T8341 dobj residue,containing
R5709 T8344 T8342 punct (,inosine
R5710 T8345 T8342 appos I,inosine
R5711 T8346 T8343 punct ),residue
R5712 T8347 T8348 advmod instead,of
R5713 T8348 T8343 prep of,residue
R5714 T8349 T8350 compound guanosine,residue
R5715 T8350 T8348 pobj residue,of
R5716 T8351 T8326 punct .,designed
R5717 T8353 T8354 det The,stability
R5718 T8354 T8356 nsubj stability,is
R5719 T8355 T8354 amod thermal,stability
R5720 T8357 T8354 prep of,stability
R5721 T8358 T8359 det the,pair
R5722 T8359 T8357 pobj pair,of
R5723 T8360 T8361 nmod I,C
R5724 T8361 T8359 compound C,pair
R5725 T8362 T8361 punct :,C
R5726 T8363 T8359 compound base,pair
R5727 T8364 T8356 acomp lower,is
R5728 T8365 T8364 prep than,lower
R5729 T8366 T8365 pobj that,than
R5730 T8367 T8366 prep of,that
R5731 T8368 T8369 det the,pair
R5732 T8369 T8367 pobj pair,of
R5733 T8370 T8371 nmod G,C
R5734 T8371 T8369 compound C,pair
R5735 T8372 T8371 punct :,C
R5736 T8373 T8369 compound base,pair
R5737 T8374 T8356 prep in,is
R5738 T8375 T8376 compound duplex,DNA
R5739 T8376 T8374 pobj DNA,in
R5740 T8377 T8356 prep due,is
R5741 T8378 T8377 pcomp to,due
R5742 T8379 T8377 pobj loss,due
R5743 T8380 T8379 prep of,loss
R5744 T8381 T8382 nummod one,bond
R5745 T8382 T8380 pobj bond,of
R5746 T8383 T8382 compound hydrogen,bond
R5747 T8384 T8356 cc and,is
R5748 T8385 T8356 conj is,is
R5749 T8386 T8387 advmod even,lower
R5750 T8387 T8385 acomp lower,is
R5751 T8388 T8387 prep than,lower
R5752 T8389 T8390 nmod A,T
R5753 T8390 T8392 compound T,pair
R5754 T8391 T8390 punct :,T
R5755 T8392 T8388 pobj pair,than
R5756 T8393 T8392 compound base,pair
R5757 T8394 T8395 punct (,31
R5758 T8395 T8392 parataxis 31,pair
R5759 T8396 T8395 punct ),31
R5760 T8397 T8356 punct .,is
R5761 T8399 T8400 nsubj We,constructed
R5762 T8401 T8402 det the,substrates
R5763 T8402 T8400 dobj substrates,constructed
R5764 T8403 T8404 npadvmod T,tailed
R5765 T8404 T8402 amod tailed,substrates
R5766 T8405 T8404 punct -,tailed
R5767 T8406 T8402 compound fork,substrates
R5768 T8407 T8402 acl containing,substrates
R5769 T8408 T8409 det the,segment
R5770 T8409 T8407 dobj segment,containing
R5771 T8410 T8411 punct (,CGG
R5772 T8411 T8409 nmod CGG,segment
R5773 T8412 T8411 nmod GCC,CGG
R5774 T8413 T8411 punct :,CGG
R5775 T8414 T8411 punct ),CGG
R5776 T8415 T8411 nummod 10,CGG
R5777 T8416 T8411 punct ", ",CGG
R5778 T8417 T8418 punct (,CIG
R5779 T8418 T8411 conj CIG,CGG
R5780 T8419 T8418 nmod GCC,CIG
R5781 T8420 T8418 punct :,CIG
R5782 T8421 T8418 punct ),CIG
R5783 T8422 T8418 nummod 10,CIG
R5784 T8423 T8418 cc or,CIG
R5785 T8424 T8425 punct (,CTT
R5786 T8425 T8418 conj CTT,CIG
R5787 T8426 T8425 nmod GAA,CTT
R5788 T8427 T8425 punct :,CTT
R5789 T8428 T8425 punct ),CTT
R5790 T8429 T8425 nummod 10,CTT
R5791 T8430 T8409 compound duplex,segment
R5792 T8431 T8409 compound DNA,segment
R5793 T8432 T8433 punct (,8E
R5794 T8433 T8407 parataxis 8E,containing
R5795 T8434 T8433 compound Figure,8E
R5796 T8435 T8433 punct ),8E
R5797 T8436 T8400 punct .,constructed
R5798 T8438 T8439 nsubj Mcm4,displaced
R5799 T8440 T8438 punct /,Mcm4
R5800 T8441 T8438 nummod 6,Mcm4
R5801 T8442 T8438 punct /,Mcm4
R5802 T8443 T8438 nummod 7,Mcm4
R5803 T8444 T8439 advmod hardly,displaced
R5804 T8445 T8446 det the,duplex
R5805 T8446 T8439 dobj duplex,displaced
R5806 T8447 T8448 nummod 31,nt
R5807 T8448 T8449 npadvmod nt,long
R5808 T8449 T8446 amod long,duplex
R5809 T8450 T8446 prep of,duplex
R5810 T8451 T8452 nmod GCC,CGG
R5811 T8452 T8454 compound CGG,repeats
R5812 T8453 T8452 punct :,CGG
R5813 T8454 T8450 pobj repeats,of
R5814 T8455 T8439 punct ", ",displaced
R5815 T8456 T8457 mark whereas,displaced
R5816 T8457 T8439 advcl displaced,displaced
R5817 T8458 T8459 det the,CTT
R5818 T8459 T8457 nsubjpass CTT,displaced
R5819 T8460 T8461 nmod T,fork
R5820 T8461 T8459 nmod fork,CTT
R5821 T8462 T8461 punct -,fork
R5822 T8463 T8459 punct /,CTT
R5823 T8464 T8459 punct (,CTT
R5824 T8465 T8459 nmod GAA,CTT
R5825 T8466 T8459 punct :,CTT
R5826 T8467 T8459 punct ),CTT
R5827 T8468 T8459 nummod 10,CTT
R5828 T8469 T8457 auxpass was,displaced
R5829 T8470 T8457 advmod efficiently,displaced
R5830 T8471 T8457 punct ", ",displaced
R5831 T8472 T8473 mark as,described
R5832 T8473 T8457 advcl described,displaced
R5833 T8474 T8473 advmod above,described
R5834 T8475 T8439 punct .,displaced
R5835 T8477 T8478 nmod T,fork
R5836 T8478 T8480 nmod fork,CIG
R5837 T8479 T8478 punct -,fork
R5838 T8480 T8485 nsubjpass CIG,displaced
R5839 T8481 T8480 punct /,CIG
R5840 T8482 T8480 punct (,CIG
R5841 T8483 T8480 nmod GCC,CIG
R5842 T8484 T8480 punct :,CIG
R5843 T8486 T8480 punct ),CIG
R5844 T8487 T8480 nummod 10,CIG
R5845 T8488 T8485 auxpass was,displaced
R5846 T8489 T8485 prep with,displaced
R5847 T8490 T8489 pobj efficiency,with
R5848 T8491 T8492 advmod much,greater
R5849 T8492 T8490 amod greater,efficiency
R5850 T8493 T8492 prep than,greater
R5851 T8494 T8493 pobj that,than
R5852 T8495 T8494 prep of,that
R5853 T8496 T8497 nmod T,fork
R5854 T8497 T8499 nmod fork,CGG
R5855 T8498 T8497 punct -,fork
R5856 T8499 T8495 pobj CGG,of
R5857 T8500 T8497 punct /,fork
R5858 T8501 T8499 punct (,CGG
R5859 T8502 T8499 nmod GCC,CGG
R5860 T8503 T8499 punct :,CGG
R5861 T8504 T8499 punct ),CGG
R5862 T8505 T8499 nummod 10,CGG
R5863 T8506 T8485 punct ", ",displaced
R5864 T8507 T8485 advcl indicating,displaced
R5865 T8508 T8509 mark that,is
R5866 T8509 T8507 ccomp is,indicating
R5867 T8510 T8511 det the,thermostability
R5868 T8511 T8509 nsubj thermostability,is
R5869 T8512 T8511 prep of,thermostability
R5870 T8513 T8514 det the,segment
R5871 T8514 T8512 pobj segment,of
R5872 T8515 T8514 compound duplex,segment
R5873 T8516 T8511 punct ", ",thermostability
R5874 T8517 T8511 cc not,thermostability
R5875 T8518 T8519 det the,lack
R5876 T8519 T8511 conj lack,thermostability
R5877 T8520 T8519 prep of,lack
R5878 T8521 T8522 compound AT,pair
R5879 T8522 T8520 pobj pair,of
R5880 T8523 T8522 compound base,pair
R5881 T8524 T8509 punct ", ",is
R5882 T8525 T8509 acomp responsible,is
R5883 T8526 T8525 prep for,responsible
R5884 T8527 T8526 pobj inability,for
R5885 T8528 T8527 prep of,inability
R5886 T8529 T8528 pobj Mcm4,of
R5887 T8530 T8529 punct /,Mcm4
R5888 T8531 T8529 nummod 6,Mcm4
R5889 T8532 T8529 punct /,Mcm4
R5890 T8533 T8529 nummod 7,Mcm4
R5891 T8534 T8535 aux to,displace
R5892 T8535 T8527 acl displace,inability
R5893 T8536 T8537 det the,duplex
R5894 T8537 T8535 dobj duplex,displace
R5895 T8538 T8485 punct .,displaced
R3787 T5598 T5568 conj unwound,unwound

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3352 9-13 PR_EXT:000010246 denotes Mcm4
T3353 9-25 GO:0097373 denotes Mcm4/6/7 complex
T3354 55-74 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3355 83-87 PR_EXT:000010246 denotes Mcm4
T3356 83-91 GO:0097373 denotes Mcm4/6/7
T3357 92-97 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T3358 110-113 CHEBI_SO_EXT:DNA denotes DNA
T3359 141-147 SO:0000985 denotes duplex
T3360 174-189 SO:0000984 denotes single-stranded
T3361 207-214 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T3362 263-270 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3363 274-278 PR_EXT:000010246 denotes Mcm4
T3364 274-282 GO:0097373 denotes Mcm4/6/7
T3365 293-297 CHEBI_SO_EXT:DNA denotes DNAs
T3366 312-320 GO_EXT:0004518 denotes nuclease
T3367 345-352 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T3368 370-374 CHEBI_SO_EXT:DNA denotes DNAs
T3369 379-383 PR_EXT:000010246 denotes Mcm4
T3370 379-387 GO:0097373 denotes Mcm4/6/7
T3371 407-414 CHEBI:27575 denotes ATP-γ-S
T3372 429-436 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3373 450-453 CHEBI_SO_EXT:DNA denotes DNA
T3374 467-475 GO_EXT:biological_recruitment denotes mobilize
T3375 480-488 GO_EXT:0004386 denotes helicase
T3376 521-528 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T3377 537-546 MOP:0000780 denotes cleavages
T3378 571-573 SO_EXT:0000028 denotes bp
T3379 574-580 SO:0000985 denotes duplex
T3380 636-645 MOP:0000780 denotes cleavages
T3381 675-690 SO:0000984 denotes single-stranded
T3382 729-736 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T3383 740-759 CHEBI_SO_EXT:double_stranded_DNA denotes double-stranded DNA
T3384 776-777 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T3385 839-854 SO:0000984 denotes single-stranded
T3386 927-931 PR_EXT:000010246 denotes Mcm4
T3387 927-935 GO:0097373 denotes Mcm4/6/7
T3388 970-974 PR_EXT:000010246 denotes Mcm4
T3389 970-978 GO:0097373 denotes Mcm4/6/7
T3390 982-983 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T3391 996-1005 SO_EXT:biological_sequence denotes sequences
T3392 1080-1099 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3393 1116-1125 GO_EXT:0004518 denotes nucleases
T3394 1160-1179 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3395 1211-1222 GO:0042555 denotes Mcm complex
T3396 1245-1248 CHEBI_SO_EXT:DNA denotes DNA
T3397 1257-1264 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3398 1288-1303 SO:0000984 denotes single-stranded
T3399 1335-1339 PR_EXT:000010246 denotes Mcm4
T3400 1335-1343 GO:0097373 denotes Mcm4/6/7
T3401 1500-1504 CHEBI_SO_EXT:base denotes base
T3402 1500-1509 SO_EXT:0000028 denotes base-pair
T3403 1510-1516 SO:0000985 denotes duplex
T3404 1677-1681 PR_EXT:000010246 denotes Mcm4
T3405 1677-1685 GO:0097373 denotes Mcm4/6/7
T3406 1690-1694 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T3407 1700-1711 GO:0006260 denotes replication
T3408 1757-1771 GO_EXT:double_hexameric_macromolecular_complex denotes double hexamer
T3409 1830-1834 NCBITaxon:10633 denotes SV40
T3410 1837-1844 CHEBI_EXT:59132 denotes antigen
T3411 1851-1859 GO_EXT:0004518 denotes Nuclease
T3412 1914-1918 GO:0005657 denotes fork
T3413 1955-1970 SO:0000984 denotes single-stranded
T3414 1998-2000 SO_EXT:0000028 denotes bp
T3415 2001-2011 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T3416 2028-2034 SO:0000985 denotes duplex
T3417 2038-2051 SO:0000984 denotes single-strand
T3418 2079-2082 GO:0042555 denotes Mcm
T3419 2083-2090 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3420 2096-2102 GO_PR_EXT:deoxyribonuclease_I denotes DNaseI
T3421 2142-2146 PR_EXT:000010246 denotes Mcm4
T3422 2142-2150 GO:0097373 denotes Mcm4/6/7
T3423 2151-2158 CHEBI_PR_EXT:protein denotes protein
T3424 2184-2203 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T3425 2251-2257 SO:0000985 denotes duplex
T3426 2295-2306 GO:0006260 denotes replication
T3427 2295-2311 GO:0005657 denotes replication fork
T4006 2314-2326 _FRAGMENT denotes Formation of
T4007 2353-2362 GO:0065003 denotes complexes
T4008 2327-2343 _FRAGMENT denotes double hexameric
T4009 2353-2362 GO_EXT:double_hexameric_macromolecular_complex denotes complexes
T4010 2344-2348 PR_EXT:000010246 denotes Mcm4
T4011 2344-2352 GO:0097373 denotes Mcm4/6/7
T4012 2375-2383 GO_EXT:0004386 denotes helicase
T4013 2444-2448 PR_EXT:000010246 denotes Mcm4
T4014 2444-2452 GO:0097373 denotes Mcm4/6/7
T4015 2465-2489 GO_EXT:double_hexameric_macromolecular_complex denotes double hexameric complex
T4016 2508-2515 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4017 2578-2593 SO:0000984 denotes single-stranded
T4018 2626-2641 SO:0000984 denotes single-stranded
T4019 2713-2724 GO:0042555 denotes Mcm complex
T4020 2765-2769 PR_EXT:000010246 denotes Mcm4
T4021 2765-2773 GO:0097373 denotes Mcm4/6/7
T4022 2789-2813 GO_EXT:hexameric_macromolecular_complex denotes single hexameric complex
T4023 2855-2857 CHEBI_SO_EXT:nucleotide denotes nt
T4024 2871-2886 SO:0000984 denotes single-stranded
T4025 2902-2926 GO_EXT:double_hexameric_macromolecular_complex denotes double hexameric complex
T4026 2940-2943 CHEBI_SO_EXT:DNA denotes DNA
T4027 3000-3014 GO_EXT:double_hexameric_macromolecular_complex denotes double-hexamer
T4028 3160-3168 SO:0000984 denotes unpaired
T4029 3203-3210 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T4030 3215-3223 GO_EXT:0004386 denotes helicase
T4031 3238-3242 PR_EXT:000010246 denotes Mcm4
T4032 3238-3246 GO:0097373 denotes Mcm4/6/7
T4033 3282-3286 PR_EXT:000010246 denotes Mcm4
T4034 3282-3290 GO:0097373 denotes Mcm4/6/7
T4035 3312-3324 CHEBI_EXT:radiolabel_process denotes radiolabeled
T4036 3378-3385 CHEBI:27575 denotes ATP-γ-S
T4037 3395-3402 GO:0032991 denotes complex
T4038 3395-3412 GO:0065003 denotes complex formation
T4039 3439-3447 CHEBI:60004 denotes mixtures
T4040 3466-3469 CHEBI_SO_EXT:DNA denotes DNA
T4041 3470-3477 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T4042 3576-3579 CHEBI_EXT:ATP denotes ATP
T4043 3591-3594 CHEBI_SO_EXT:DNA denotes DNA
T4044 3591-3603 GO_EXT:0003678 denotes DNA helicase
T4045 3663-3672 GO:0032991 denotes complexes
T4046 3678-3682 PR_EXT:000010246 denotes Mcm4
T4047 3678-3686 GO:0097373 denotes Mcm4/6/7
T4048 3778-3785 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4049 3789-3793 PR_EXT:000010246 denotes Mcm4
T4050 3789-3797 GO:0097373 denotes Mcm4/6/7
T4051 3832-3841 GO:0032991 denotes complexes
T4052 3855-3869 GO_EXT:double_hexameric_macromolecular_complex denotes double hexamer
T4053 3926-3933 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4054 3970-3994 GO_EXT:double_hexameric_macromolecular_complex denotes double hexamer complexes
T4055 4057-4081 GO_EXT:hexameric_macromolecular_complex denotes single hexamer complexes
T4056 4123-4138 SO:0000984 denotes single-stranded
T4057 4162-4164 CHEBI_SO_EXT:nucleotide denotes nt
T4058 4211-4227 GO_EXT:double_hexameric_macromolecular_complex denotes double-hexameric
T4059 4228-4231 GO:0042555 denotes Mcm
T4060 4232-4240 GO_EXT:0004386 denotes helicase
T4061 4267-4270 CHEBI_SO_EXT:DNA denotes DNA
T4062 4267-4279 GO_EXT:0003678 denotes DNA helicase
T4063 4288-4292 PR_EXT:000010246 denotes Mcm4
T4064 4288-4304 GO:0097373 denotes Mcm4/6/7 complex
T4065 4318-4326 GO_EXT:0004386 denotes helicase
T4066 4444-4459 SO:0000984 denotes single-stranded
T4067 4487-4489 CHEBI_SO_EXT:nucleotide denotes nt
T4068 4591-4606 SO:0000984 denotes single-stranded
T4069 4630-4632 CHEBI_SO_EXT:nucleotide denotes nt
T4070 4664-4672 GO_EXT:0004386 denotes helicase
T4071 4789-4793 PR_EXT:000010246 denotes Mcm4
T4072 4789-4805 GO:0097373 denotes Mcm4/6/7 complex
T4073 4819-4822 CHEBI_SO_EXT:DNA denotes DNA
T4074 4828-4852 GO_EXT:double_hexameric_macromolecular_complex denotes double hexameric complex
T4075 4878-4884 SO:0000985 denotes duplex
T4076 4909-4912 CHEBI_SO_EXT:DNA denotes DNA
T4691 4931-4938 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T4692 4944-4959 SO:0000984 denotes single-stranded
T4693 4996-5008 _FRAGMENT denotes unwinding of
T4694 5016-5019 GO:0032508 denotes DNA
T4695 5016-5019 CHEBI_SO_EXT:DNA denotes DNA
T4696 5023-5027 PR_EXT:000010246 denotes Mcm4
T4697 5023-5031 GO:0097373 denotes Mcm4/6/7
T4698 5042-5049 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T4699 5057-5061 PR_EXT:000010246 denotes Mcm4
T4700 5057-5065 GO:0097373 denotes Mcm4/6/7
T4701 5066-5080 GO_EXT:double_hexameric_macromolecular_complex denotes double hexamer
T4702 5110-5117 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4703 5118-5127 GO_MOP_EXT:catalysis denotes catalyzes
T4704 5156-5162 SO:0000985 denotes duplex
T4705 5209-5217 GO_EXT:hexameric_macromolecular_complex denotes hexamers
T4706 5332-5336 PR_EXT:000010246 denotes Mcm4
T4707 5332-5340 GO:0097373 denotes Mcm4/6/7
T4708 5350-5357 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T4709 5391-5406 SO:0000984 denotes single-stranded
T4710 5454-5455 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4711 5456-5457 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4712 5487-5488 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4713 5509-5510 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4714 5541-5542 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4715 5563-5564 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4716 5581-5589 GO_EXT:0004386 denotes helicase
T4717 5638-5642 PR_EXT:000010246 denotes Mcm4
T4718 5638-5646 GO:0097373 denotes Mcm4/6/7
T4719 5717-5718 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4720 5743-5747 PR_EXT:000010246 denotes Mcm4
T4721 5743-5751 GO:0097373 denotes Mcm4/6/7
T4722 5756-5760 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T4723 5770-5771 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T4724 5772-5773 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4725 5791-5815 GO_EXT:double_hexameric_macromolecular_complex denotes double hexameric complex
T4726 5899-5907 GO_EXT:0004386 denotes helicase
T4727 5935-5942 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4728 5964-5971 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T4729 6011-6018 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T4730 6049-6055 SO:0000985 denotes duplex
T4731 6106-6110 GO:0005657 denotes fork
T4732 6182-6183 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T4733 6387-6396 CHEBI:36357 denotes molecules
T4734 6404-6408 PR_EXT:000010246 denotes Mcm4
T4735 6404-6412 GO:0097373 denotes Mcm4/6/7
T4736 6413-6421 GO_EXT:hexameric_macromolecular_complex denotes hexamers
T5190 6453-6460 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes Binding
T5191 6465-6473 GO_EXT:0004386 denotes helicase
T5192 6485-6489 PR_EXT:000010246 denotes Mcm4
T5193 6485-6493 GO:0097373 denotes Mcm4/6/7
T5194 6497-6503 GO:0005657 denotes forked
T5195 6508-6511 _FRAGMENT denotes 3′-
T5196 6518-6527 GO:0006272 denotes extension
T5197 6515-6527 GO:0006273 denotes 5′-extension
T5198 6594-6602 GO_EXT:0004386 denotes helicase
T5199 6616-6622 GO:0005657 denotes forked
T5200 6637-6641 GO:0005657 denotes fork
T5201 6692-6696 GO:0005657 denotes fork
T5202 6729-6733 GO:0005657 denotes fork
T5203 6759-6763 GO:0005657 denotes fork
T5204 6784-6796 GO:0006273 denotes 5′-extension
T5205 6800-6812 GO:0006272 denotes 3′-extension
T5206 6842-6846 PR_EXT:000010246 denotes Mcm4
T5207 6842-6850 GO:0097373 denotes Mcm4/6/7
T5208 6851-6856 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T5209 6862-6866 GO:0005657 denotes fork
T5210 6876-6880 GO:0005657 denotes fork
T5211 6929-6933 GO:0005657 denotes fork
T5212 6979-6983 PR_EXT:000023591 denotes PriA
T5213 6984-6992 GO_EXT:0004386 denotes helicase
T5214 7013-7018 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T5215 7024-7028 GO:0005657 denotes fork
T5216 7060-7064 GO:0005657 denotes fork
T5217 7102-7106 PR_EXT:000010246 denotes Mcm4
T5218 7102-7110 GO:0097373 denotes Mcm4/6/7
T5219 7111-7116 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T5220 7125-7137 GO:0006273 denotes 5′-extension
T5221 7142-7154 GO:0006272 denotes 3′-extension
T5222 7208-7212 GO:0005657 denotes fork
T5223 7223-7227 GO:0005657 denotes fork
T5224 7245-7249 PR_EXT:000010246 denotes Mcm4
T5225 7245-7253 GO:0097373 denotes Mcm4/6/7
T5226 7254-7259 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T5227 7265-7269 GO:0005657 denotes fork
T5228 7311-7318 GO:0032991 denotes complex
T5229 7380-7384 PR_EXT:000010246 denotes Mcm4
T5230 7380-7396 GO:0097373 denotes Mcm4/6/7 complex
T5231 7412-7415 CHEBI_SO_EXT:DNA denotes DNA
T5232 7455-7470 SO:0000984 denotes single-stranded
T5233 7577-7596 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T5234 7605-7609 GO:0005657 denotes fork
T5235 7645-7649 GO:0005657 denotes fork
T5236 7659-7663 GO:0005657 denotes fork
T5237 7691-7695 PR_EXT:000010246 denotes Mcm4
T5238 7691-7699 GO:0097373 denotes Mcm4/6/7
T5239 7724-7732 GO_EXT:0004386 denotes helicase
T5240 7746-7750 GO:0005657 denotes fork
T5241 7775-7781 SO:0000985 denotes duplex
T5242 7808-7827 CHEBI_SO_EXT:double_stranded_DNA denotes double-stranded DNA
T5243 7856-7862 GO_EXT:0016887 denotes ATPase
T5244 7875-7879 PR_EXT:000010246 denotes Mcm4
T5245 7875-7883 GO:0097373 denotes Mcm4/6/7
T5246 7907-7911 PR_EXT:000023591 denotes PriA
T5247 7934-7942 GO_EXT:0004386 denotes helicase
T5248 7962-7967 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5249 7975-7979 GO:0005657 denotes fork
T5250 8005-8009 GO:0005657 denotes fork
T5251 8041-8044 CHEBI_SO_EXT:DNA denotes DNA
T5252 8050-8054 GO:0005657 denotes fork
T5253 8103-8107 GO:0005657 denotes fork
T5254 8173-8177 PR_EXT:000010246 denotes Mcm4
T5255 8173-8189 GO:0097373 denotes Mcm4/6/7 complex
T5256 8190-8195 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5257 8199-8218 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T5258 8232-8240 GO_EXT:0004386 denotes helicase
T5259 8280-8295 SO:0000984 denotes single-stranded
T5866 8306-8318 GO:0006272 denotes 3′-extension
T5867 8329-8331 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5868 8354-8358 PR_EXT:000010246 denotes Mcm4
T5869 8354-8362 GO:0097373 denotes Mcm4/6/7
T5870 8393-8405 GO:0006272 denotes 3′-extension
T5871 8428-8436 NCBITaxon:2157 denotes archaeal
T5872 8437-8440 GO:0042555 denotes Mcm
T5873 8445-8452 GO_EXT:hexameric_macromolecular_complex denotes hexamer
T5874 8464-8471 _FRAGMENT denotes fission
T5875 8484-8489 NCBITaxon:4894 denotes yeast
T5876 8476-8483 GO:0007114 denotes budding
T5877 8476-8489 NCBITaxon:4892 denotes budding yeast
T5878 8490-8503 GO:0042555 denotes Mcm complexes
T5879 8536-8548 GO:0006272 denotes 3′-extension
T5880 8576-8578 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5881 8586-8588 CHEBI_EXT:deoxyadenosine_nucleoside_or_nucleotide_residue denotes dA
T5882 8596-8598 CHEBI_EXT:deoxycytidine_nucleoside_or_nucleotide_residue denotes dC
T5883 8609-8611 CHEBI_EXT:deoxyguanosine_nucleoside_or_nucleotide_residue denotes dG
T5884 8650-8655 NCBITaxon:10088 denotes mouse
T5885 8656-8660 PR_EXT:000010246 denotes Mcm4
T5886 8656-8664 GO:0097373 denotes Mcm4/6/7
T5887 8716-8720 PR_EXT:000010246 denotes Mcm4
T5888 8716-8724 GO:0097373 denotes Mcm4/6/7
T5889 8725-8730 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5890 8734-8736 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5891 8739-8741 CHEBI_EXT:deoxycytidine_nucleoside_or_nucleotide_residue denotes dC
T5892 8747-8749 CHEBI_EXT:deoxyguanosine_nucleoside_or_nucleotide_residue denotes dG
T5893 8750-8762 GO:0006272 denotes 3′-extension
T5894 8793-8795 CHEBI_EXT:deoxyadenosine_nucleoside_or_nucleotide_residue denotes dA
T5895 8796-8808 GO:0006272 denotes 3′-extension
T5896 8897-8901 PR_EXT:000010246 denotes Mcm4
T5897 8897-8905 GO:0097373 denotes Mcm4/6/7
T5898 8906-8911 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5899 8921-8926 CHEBI_SO_EXT:oligonucleotide denotes oligo
T5900 8927-8929 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5901 8932-8934 CHEBI_EXT:deoxycytidine_nucleoside_or_nucleotide_residue denotes dC
T5902 8940-8942 CHEBI_EXT:deoxyguanosine_nucleoside_or_nucleotide_residue denotes dG
T5903 8963-8968 CHEBI_SO_EXT:oligonucleotide denotes oligo
T5904 8969-8971 CHEBI_EXT:deoxyadenosine_nucleoside_or_nucleotide_residue denotes dA
T5905 8992-8994 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5906 9002-9014 GO:0006272 denotes 3′-extension
T5907 9044-9049 PR_EXT:000010246 denotes Mcm 4
T5908 9044-9047 _FRAGMENT denotes Mcm
T5909 9050-9051 PR_EXT:000010248 denotes 6
T5910 9052-9053 PR_EXT:000010249 denotes 7
T5911 9044-9053 GO:0097373 denotes Mcm 4/6/7
T5912 9175-9180 NCBITaxon_EXT:yeast denotes yeast
T5913 9181-9185 PR_EXT:000010246 denotes Mcm4
T5914 9181-9189 GO:0097373 denotes Mcm4/6/7
T5915 9190-9199 GO_EXT:0004386 denotes helicases
T5916 9235-9247 GO:0006272 denotes 3′-extension
T5917 9273-9275 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5918 9283-9295 GO:0006273 denotes 5′-extension
T5919 9306-9310 PR_EXT:000010246 denotes Mcm4
T5920 9306-9314 GO:0097373 denotes Mcm4/6/7
T5921 9321-9325 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T5922 9352-9355 GO:0042555 denotes Mcm
T5923 9356-9364 GO_EXT:0004386 denotes helicase
T5924 9397-9399 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T5925 9407-9419 GO:0006272 denotes 3′-extension
T5926 9509-9513 GO:0005657 denotes fork
T5927 9540-9548 GO_EXT:0004386 denotes helicase
T5928 9620-9629 NCBITaxon:40674 denotes mammalian
T5929 9630-9633 GO:0042555 denotes Mcm
T5930 9634-9642 GO_EXT:0004386 denotes helicase
T5931 9673-9680 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T5932 9699-9714 SO:0000984 denotes single-stranded
T6357 9741-9748 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6358 9775-9778 GO:0042555 denotes Mcm
T6359 9779-9787 GO_EXT:0004386 denotes helicase
T6360 9872-9879 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6361 9880-9888 CHEBI_EXT:residue denotes residues
T6362 9911-9914 GO:0042555 denotes Mcm
T6363 9915-9923 GO_EXT:0004386 denotes helicase
T6364 9950-9956 SO:0000985 denotes duplex
T6365 9961-9980 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T6366 9997-9999 SO_EXT:0000028 denotes bp
T6367 10000-10006 SO:0000985 denotes duplex
T6368 10051-10053 CHEBI_SO_EXT:nucleotide denotes nt
T6369 10078-10088 CHEBI_SO_EXT:nucleotide denotes nucleotide
T6370 10140-10145 NCBITaxon:10088 denotes mouse
T6371 10146-10150 PR_EXT:000010246 denotes Mcm4
T6372 10146-10154 GO:0097373 denotes Mcm4/6/7
T6373 10210-10214 PR_EXT:000010246 denotes Mcm4
T6374 10210-10218 GO:0097373 denotes Mcm4/6/7
T6375 10240-10248 GO:0097617 denotes annealed
T6376 10255-10270 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T6377 10319-10327 GO_EXT:0004386 denotes helicase
T6378 10394-10401 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T6379 10408-10420 CHEBI_SO_EXT:dinucleotide denotes dinucleotide
T6380 10458-10466 GO_EXT:0004386 denotes helicase
T6381 10514-10521 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6382 10660-10667 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T6383 10674-10687 CHEBI_SO_EXT:dinucleotide denotes dinucleotides
T6384 10693-10700 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6385 10738-10741 GO:0042555 denotes Mcm
T6386 10742-10750 GO_EXT:0004386 denotes helicase
T6387 10801-10807 GO:0097617 denotes anneal
T6388 10846-10849 GO:0042555 denotes Mcm
T6389 10996-11005 SO_EXT:sequence_repeat_unit_or_region denotes repeating
T6390 11006-11015 SO_EXT:biological_sequence denotes sequences
T6391 11019-11026 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6392 11031-11039 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes cytosine
T6393 11067-11073 SO:0000985 denotes duplex
T6394 11174-11178 PR_EXT:000010246 denotes Mcm4
T6395 11174-11190 GO:0097373 denotes Mcm4/6/7 complex
T6396 11260-11267 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6397 11313-11316 GO:0042555 denotes Mcm
T6398 11317-11325 GO_EXT:0004386 denotes helicase
T6399 11426-11428 CHEBI_SO_EXT:nucleotide denotes nt
T6400 11544-11551 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6401 11649-11656 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6402 11696-11699 GO:0042555 denotes Mcm
T6403 11700-11708 GO_EXT:0004386 denotes helicase
T6936 11751-11760 SO_EXT:biological_sequence denotes sequences
T6937 11770-11775 PR_EXT:000000084 denotes c-myc
T6938 11776-11782 SO_EXT:0000296 denotes origin
T6939 11792-11795 GO:0042555 denotes Mcm
T6940 11796-11804 GO_EXT:0004386 denotes helicase
T6941 11846-11855 SO_EXT:biological_sequence denotes sequences
T6942 11877-11879 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes dT
T6943 11906-11911 NCBITaxon:9606 denotes human
T6944 11912-11920 PR_EXT:000009861 denotes lamin B2
T6945 11921-11927 SO_EXT:0000296 denotes origin
T6946 11933-11940 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6947 11994-11997 GO:0042555 denotes Mcm
T6948 11998-12006 GO_EXT:0004386 denotes helicase
T6949 12024-12035 SO_EXT:sequence_substitution_entity_or_process denotes replacement
T6950 12039-12047 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymines
T6951 12053-12061 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes guanines
T6952 12076-12084 GO_EXT:0004386 denotes helicase
T6953 12139-12150 GO:0006260 denotes replication
T6954 12139-12158 SO_EXT:0000296 denotes replication origins
T6955 12174-12181 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6956 12219-12222 GO:0042555 denotes Mcm
T6957 12223-12231 GO_EXT:0004386 denotes helicase
T6958 12299-12304 PR_EXT:000000084 denotes c-myc
T6959 12317-12326 SO_EXT:biological_sequence denotes sequences
T6960 12349-12352 CHEBI_SO_EXT:DNA denotes DNA
T6961 12349-12362 GO:0032508 denotes DNA unwinding
T6962 12386-12391 NCBITaxon:9606 denotes human
T6963 12392-12397 PR_EXT:000000084 denotes c-myc
T6964 12398-12404 SO_EXT:0000296 denotes origin
T6965 12428-12433 PR_EXT:000000084 denotes c-myc
T6966 12434-12444 GO_EXT:DNA_replicator denotes replicator
T6967 12467-12475 SO:0000984 denotes unpaired
T6968 12493-12498 PR_EXT:000000084 denotes c-myc
T6969 12548-12553 PR_EXT:000000084 denotes c-myc
T6970 12659-12664 PR_EXT:000000084 denotes c-myc
T6971 12665-12671 SO_EXT:0000296 denotes origin
T6972 12686-12694 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6973 12721-12731 GO_EXT:DNA_replicator denotes replicator
T6974 12747-12751 PR_EXT:000010246 denotes Mcm4
T6975 12747-12755 GO:0097373 denotes Mcm4/6/7
T6976 12770-12778 PR_EXT:000009861 denotes lamin B2
T6977 12780-12787 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6978 12800-12805 PR_EXT:000000084 denotes c-myc
T6979 12826-12831 PR_EXT:000000084 denotes c-myc
T6980 12901-12910 SO_EXT:biological_sequence denotes sequences
T6981 12920-12925 PR_EXT:000000084 denotes c-myc
T6982 12926-12932 SO_EXT:0000296 denotes origin
T6983 12979-12982 GO:0042555 denotes Mcm
T6984 12983-12991 GO_EXT:0004386 denotes helicase
T6985 13025-13034 SO_EXT:biological_sequence denotes sequences
T6986 13044-13051 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6987 13073-13077 PR_EXT:000010246 denotes Mcm4
T6988 13073-13081 GO:0097373 denotes Mcm4/6/7
T6989 13097-13099 CHEBI_SO_EXT:nucleotide denotes nt
T6990 13173-13180 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T6991 13202-13210 SO_EXT:biological_sequence denotes sequence
T6992 13234-13237 GO:0042555 denotes Mcm
T6993 13238-13246 GO_EXT:0004386 denotes helicase
T6994 13280-13284 PR_EXT:000010246 denotes MCM4
T6995 13280-13288 GO:0097373 denotes MCM4/6/7
T6996 13289-13294 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T6997 13352-13357 PR_EXT:000000084 denotes c-myc
T6998 13375-13380 PR_EXT:000000084 denotes c-myc
T6999 13425-13433 PR_EXT:000009861 denotes lamin B2
T7000 13458-13466 GO_EXT:0004386 denotes helicase
T7001 13471-13474 CHEBI_SO_EXT:DNA denotes DNA
T7002 13475-13482 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T7003 13593-13600 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes guanine
T7004 13605-13613 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes cytosine
T7005 13628-13632 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T7006 13636-13639 GO:0042555 denotes Mcm
T7007 13664-13672 GO_EXT:0004386 denotes helicase
T7598 13680-13683 CHEBI_SO_EXT:DNA denotes DNA
T7599 13680-13693 GO:0032508 denotes DNA unwinding
T7600 13697-13701 PR_EXT:000010246 denotes Mcm4
T7601 13697-13705 GO:0097373 denotes Mcm4/6/7
T7602 13734-13743 SO_EXT:biological_sequence denotes sequences
T7603 13751-13757 SO:0000985 denotes duplex
T7604 13792-13799 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T7605 13805-13824 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T7606 13879-13882 GO:0042555 denotes Mcm
T7607 13883-13891 GO_EXT:0004386 denotes helicase
T7608 13926-13933 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T7609 13934-13943 SO_EXT:biological_sequence denotes sequences
T7610 13972-13995 GO:0032508 denotes unwinding of duplex DNA
T7611 13985-13995 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7612 14037-14047 CHEBI_SO_EXT:nucleotide denotes nucleotide
T7613 14067-14073 SO:0000985 denotes duplex
T7614 14174-14178 GO:0005657 denotes fork
T7615 14193-14197 GO:0005657 denotes fork
T7616 14218-14227 SO_EXT:biological_sequence denotes sequences
T7617 14235-14241 SO:0000985 denotes duplex
T7618 14283-14291 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes cytosine
T7619 14292-14300 CHEBI_EXT:residue denotes residues
T7620 14345-14349 PR_EXT:000010246 denotes Mcm4
T7621 14345-14353 GO:0097373 denotes Mcm4/6/7
T7622 14354-14359 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bound
T7623 14371-14375 GO:0005657 denotes fork
T7624 14460-14464 PR_EXT:000010246 denotes Mcm4
T7625 14460-14468 GO:0097373 denotes Mcm4/6/7
T7626 14469-14474 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T7627 14478-14493 SO:0000984 denotes single-stranded
T7628 14513-14516 CHEBI_SO_EXT:DNA denotes DNA
T7629 14513-14525 GO_EXT:0003678 denotes DNA helicase
T7630 14536-14540 GO:0005657 denotes fork
T7631 14573-14577 PR_EXT:000010246 denotes Mcm4
T7632 14573-14581 GO:0097373 denotes Mcm4/6/7
T7633 14612-14616 NCBITaxon:10633 denotes SV40
T7634 14619-14626 CHEBI_EXT:59132 denotes antigen
T7635 14627-14630 CHEBI_SO_EXT:DNA denotes DNA
T7636 14627-14639 GO_EXT:0003678 denotes DNA helicase
T7637 14658-14665 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T7638 14669-14676 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes adenine
T7639 14680-14688 SO_EXT:sequence_insertion_process denotes inserted
T7640 14704-14714 CHEBI_SO_EXT:nucleotide denotes nucleotide
T7641 14716-14723 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7642 14777-14781 GO:0005657 denotes fork
T7643 14800-14804 GO:0005657 denotes fork
T7644 14905-14911 SO:0000985 denotes duplex
T7645 14923-14927 GO:0005657 denotes fork
T7646 14945-14949 GO:0005657 denotes fork
T7647 14967-14971 GO:0005657 denotes fork
T7648 14992-14996 GO:0005657 denotes fork
T7649 15044-15050 SO:0000985 denotes duplex
T7650 15187-15193 SO:0000985 denotes duplex
T7651 15187-15197 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7652 15194-15197 CHEBI_SO_EXT:DNA denotes DNA
T7653 15203-15218 _FRAGMENT denotes single-stranded
T7654 15228-15231 CHEBI_SO_EXT:single_stranded_DNA denotes DNA
T7655 15219-15227 SO:0000988 denotes circular
T7656 15289-15295 SO:0000985 denotes duplex
T7657 15289-15299 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7658 15296-15299 CHEBI_SO_EXT:DNA denotes DNA
T7659 15322-15328 SO:0000985 denotes duplex
T7660 15373-15379 SO_EXT:0000440 denotes vector
T7661 15421-15423 CHEBI_SO_EXT:nucleotide denotes nt
T7662 15429-15430 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T7663 15444-15454 SO_EXT:sequence_downstreamness denotes downstream
T7664 15462-15473 GO:0097617 denotes hybridizing
T7665 15474-15489 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T7666 15509-15513 PR_EXT:000010246 denotes Mcm4
T7667 15509-15517 GO:0097373 denotes Mcm4/6/7
T7668 15518-15526 GO_EXT:0004386 denotes helicase
T7669 15540-15550 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7670 15561-15563 CHEBI_SO_EXT:nucleotide denotes nt
T7671 15810-15812 CHEBI_SO_EXT:nucleotide denotes nt
T7672 15891-15895 PR_EXT:000010246 denotes Mcm4
T7673 15891-15907 GO:0097373 denotes Mcm4/6/7 complex
T7674 15950-15954 GO:0005657 denotes fork
T7675 15982-15988 SO:0000985 denotes duplex
T7676 16032-16035 GO:0042555 denotes Mcm
T7677 16036-16044 GO_EXT:0004386 denotes helicase
T7678 16094-16101 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T7679 16102-16109 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes adenine
T7680 16110-16115 SO_EXT:0000028 denotes pairs
T7681 16148-16154 SO:0000985 denotes duplex
T7682 16201-16205 PR_EXT:000010246 denotes Mcm4
T7683 16201-16209 GO:0097373 denotes Mcm4/6/7
T7684 16226-16230 PR_EXT:000010246 denotes Mcm4
T7685 16226-16234 GO:0097373 denotes Mcm4/6/7
T7686 16299-16303 CHEBI_SO_EXT:base denotes base
T7687 16299-16310 SO_EXT:0000028 denotes base-paired
T7688 16389-16393 GO:0005657 denotes fork
T7689 16415-16422 CHEBI_SO_EXT:inosine denotes inosine
T7690 16424-16425 CHEBI_SO_EXT:inosine denotes I
T7691 16427-16434 CHEBI_EXT:residue denotes residue
T7692 16446-16455 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes guanosine
T7693 16456-16463 CHEBI_EXT:residue denotes residue
T7694 16494-16495 CHEBI_SO_EXT:inosine denotes I
T7695 16496-16497 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes C
T7696 16498-16502 CHEBI_SO_EXT:base denotes base
T7697 16498-16507 SO_EXT:0000028 denotes base pair
T7698 16534-16535 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T7699 16536-16537 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes C
T7700 16538-16542 CHEBI_SO_EXT:base denotes base
T7701 16538-16547 SO_EXT:0000028 denotes base pair
T7702 16551-16561 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7703 16581-16589 CHEBI_EXT:hydrogen denotes hydrogen
T7704 16618-16619 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A
T7705 16620-16621 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T7706 16622-16626 CHEBI_SO_EXT:base denotes base
T7707 16622-16631 SO_EXT:0000028 denotes base pair
T7708 16666-16670 GO:0005657 denotes fork
T7709 16737-16747 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7710 16769-16773 PR_EXT:000010246 denotes Mcm4
T7711 16769-16777 GO:0097373 denotes Mcm4/6/7
T7712 16802-16804 CHEBI_SO_EXT:nucleotide denotes nt
T7713 16828-16835 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7714 16851-16855 GO:0005657 denotes fork
T7715 16917-16921 GO:0005657 denotes fork
T7716 16992-16996 GO:0005657 denotes fork
T7717 17053-17059 SO:0000985 denotes duplex
T7718 17088-17092 CHEBI_SO_EXT:base denotes base
T7719 17088-17097 SO_EXT:0000028 denotes base pair
T7720 17131-17135 PR_EXT:000010246 denotes Mcm4
T7721 17131-17139 GO:0097373 denotes Mcm4/6/7
R2615 T4007 T4006 _lexicallyChainedTo complexes,Formation of
R2616 T4009 T4008 _lexicallyChainedTo complexes,double hexameric
R3144 T4694 T4693 _lexicallyChainedTo DNA,unwinding of
R3463 T5196 T5195 _lexicallyChainedTo extension,3′-
R3964 T5875 T5874 _lexicallyChainedTo yeast,fission
R3965 T5909 T5908 _lexicallyChainedTo 6,Mcm
R3966 T5910 T5908 _lexicallyChainedTo 7,Mcm
R5123 T7654 T7653 _lexicallyChainedTo DNA,single-stranded

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3303 9-13 PR:000010246 denotes Mcm4
T3304 9-25 GO:0097373 denotes Mcm4/6/7 complex
T3305 55-70 SO:0000984 denotes single-stranded
T3306 83-87 PR:000010246 denotes Mcm4
T3307 83-91 GO:0097373 denotes Mcm4/6/7
T3308 141-147 SO:0000985 denotes duplex
T3309 174-189 SO:0000984 denotes single-stranded
T3310 274-278 PR:000010246 denotes Mcm4
T3311 274-282 GO:0097373 denotes Mcm4/6/7
T3312 379-383 PR:000010246 denotes Mcm4
T3313 379-387 GO:0097373 denotes Mcm4/6/7
T3314 407-414 CHEBI:27575 denotes ATP-γ-S
T3315 537-546 MOP:0000780 denotes cleavages
T3316 571-573 SO:0000028 denotes bp
T3317 574-580 SO:0000985 denotes duplex
T3318 636-645 MOP:0000780 denotes cleavages
T3319 675-690 SO:0000984 denotes single-stranded
T3320 740-755 SO:0000985 denotes double-stranded
T3321 839-854 SO:0000984 denotes single-stranded
T3322 927-931 PR:000010246 denotes Mcm4
T3323 927-935 GO:0097373 denotes Mcm4/6/7
T3324 970-974 PR:000010246 denotes Mcm4
T3325 970-978 GO:0097373 denotes Mcm4/6/7
T3326 1080-1095 SO:0000984 denotes single-stranded
T3327 1160-1175 SO:0000984 denotes single-stranded
T3328 1211-1222 GO:0042555 denotes Mcm complex
T3329 1288-1303 SO:0000984 denotes single-stranded
T3330 1335-1339 PR:000010246 denotes Mcm4
T3331 1335-1343 GO:0097373 denotes Mcm4/6/7
T3332 1500-1509 SO:0000028 denotes base-pair
T3333 1510-1516 SO:0000985 denotes duplex
T3334 1677-1681 PR:000010246 denotes Mcm4
T3335 1677-1685 GO:0097373 denotes Mcm4/6/7
T3336 1700-1711 GO:0006260 denotes replication
T3337 1830-1834 NCBITaxon:10633 denotes SV40
T3338 1837-1844 CHEBI:59132 denotes antigen
T3339 1914-1918 GO:0005657 denotes fork
T3340 1955-1970 SO:0000984 denotes single-stranded
T3341 1998-2000 SO:0000028 denotes bp
T3342 2001-2007 SO:0000985 denotes duplex
T3343 2028-2034 SO:0000985 denotes duplex
T3344 2038-2051 SO:0000984 denotes single-strand
T3345 2079-2082 GO:0042555 denotes Mcm
T3346 2142-2146 PR:000010246 denotes Mcm4
T3347 2142-2150 GO:0097373 denotes Mcm4/6/7
T3348 2184-2199 SO:0000984 denotes single-stranded
T3349 2251-2257 SO:0000985 denotes duplex
T3350 2295-2306 GO:0006260 denotes replication
T3351 2295-2311 GO:0005657 denotes replication fork
T3970 2314-2326 _FRAGMENT denotes Formation of
T3971 2353-2362 GO:0065003 denotes complexes
T3972 2344-2348 PR:000010246 denotes Mcm4
T3973 2344-2352 GO:0097373 denotes Mcm4/6/7
T3974 2444-2448 PR:000010246 denotes Mcm4
T3975 2444-2452 GO:0097373 denotes Mcm4/6/7
T3976 2578-2593 SO:0000984 denotes single-stranded
T3977 2626-2641 SO:0000984 denotes single-stranded
T3978 2713-2724 GO:0042555 denotes Mcm complex
T3979 2765-2769 PR:000010246 denotes Mcm4
T3980 2765-2773 GO:0097373 denotes Mcm4/6/7
T3981 2871-2886 SO:0000984 denotes single-stranded
T3982 3160-3168 SO:0000984 denotes unpaired
T3983 3238-3242 PR:000010246 denotes Mcm4
T3984 3238-3246 GO:0097373 denotes Mcm4/6/7
T3985 3282-3286 PR:000010246 denotes Mcm4
T3986 3282-3290 GO:0097373 denotes Mcm4/6/7
T3987 3378-3385 CHEBI:27575 denotes ATP-γ-S
T3988 3395-3402 GO:0032991 denotes complex
T3989 3395-3412 GO:0065003 denotes complex formation
T3990 3439-3447 CHEBI:60004 denotes mixtures
T3991 3663-3672 GO:0032991 denotes complexes
T3992 3678-3682 PR:000010246 denotes Mcm4
T3993 3678-3686 GO:0097373 denotes Mcm4/6/7
T3994 3789-3793 PR:000010246 denotes Mcm4
T3995 3789-3797 GO:0097373 denotes Mcm4/6/7
T3996 3832-3841 GO:0032991 denotes complexes
T3997 4123-4138 SO:0000984 denotes single-stranded
T3998 4228-4231 GO:0042555 denotes Mcm
T3999 4288-4292 PR:000010246 denotes Mcm4
T4000 4288-4304 GO:0097373 denotes Mcm4/6/7 complex
T4001 4444-4459 SO:0000984 denotes single-stranded
T4002 4591-4606 SO:0000984 denotes single-stranded
T4003 4789-4793 PR:000010246 denotes Mcm4
T4004 4789-4805 GO:0097373 denotes Mcm4/6/7 complex
T4005 4878-4884 SO:0000985 denotes duplex
T4671 4944-4959 SO:0000984 denotes single-stranded
T4672 4996-5008 _FRAGMENT denotes unwinding of
T4673 5016-5019 GO:0032508 denotes DNA
T4674 5023-5027 PR:000010246 denotes Mcm4
T4675 5023-5031 GO:0097373 denotes Mcm4/6/7
T4676 5057-5061 PR:000010246 denotes Mcm4
T4677 5057-5065 GO:0097373 denotes Mcm4/6/7
T4678 5156-5162 SO:0000985 denotes duplex
T4679 5332-5336 PR:000010246 denotes Mcm4
T4680 5332-5340 GO:0097373 denotes Mcm4/6/7
T4681 5391-5406 SO:0000984 denotes single-stranded
T4682 5638-5642 PR:000010246 denotes Mcm4
T4683 5638-5646 GO:0097373 denotes Mcm4/6/7
T4684 5743-5747 PR:000010246 denotes Mcm4
T4685 5743-5751 GO:0097373 denotes Mcm4/6/7
T4686 6049-6055 SO:0000985 denotes duplex
T4687 6106-6110 GO:0005657 denotes fork
T4688 6387-6396 CHEBI:36357 denotes molecules
T4689 6404-6408 PR:000010246 denotes Mcm4
T4690 6404-6412 GO:0097373 denotes Mcm4/6/7
T5136 6485-6489 PR:000010246 denotes Mcm4
T5137 6485-6493 GO:0097373 denotes Mcm4/6/7
T5138 6497-6503 GO:0005657 denotes forked
T5139 6508-6511 _FRAGMENT denotes 3′-
T5140 6518-6527 GO:0006272 denotes extension
T5141 6515-6527 GO:0006273 denotes 5′-extension
T5142 6616-6622 GO:0005657 denotes forked
T5143 6637-6641 GO:0005657 denotes fork
T5144 6692-6696 GO:0005657 denotes fork
T5145 6729-6733 GO:0005657 denotes fork
T5146 6759-6763 GO:0005657 denotes fork
T5147 6784-6796 GO:0006273 denotes 5′-extension
T5148 6800-6812 GO:0006272 denotes 3′-extension
T5149 6842-6846 PR:000010246 denotes Mcm4
T5150 6842-6850 GO:0097373 denotes Mcm4/6/7
T5151 6862-6866 GO:0005657 denotes fork
T5152 6876-6880 GO:0005657 denotes fork
T5153 6929-6933 GO:0005657 denotes fork
T5154 6979-6983 PR:000023591 denotes PriA
T5155 7024-7028 GO:0005657 denotes fork
T5156 7060-7064 GO:0005657 denotes fork
T5157 7102-7106 PR:000010246 denotes Mcm4
T5158 7102-7110 GO:0097373 denotes Mcm4/6/7
T5159 7125-7137 GO:0006273 denotes 5′-extension
T5160 7142-7154 GO:0006272 denotes 3′-extension
T5161 7208-7212 GO:0005657 denotes fork
T5162 7223-7227 GO:0005657 denotes fork
T5163 7245-7249 PR:000010246 denotes Mcm4
T5164 7245-7253 GO:0097373 denotes Mcm4/6/7
T5165 7265-7269 GO:0005657 denotes fork
T5166 7311-7318 GO:0032991 denotes complex
T5167 7380-7384 PR:000010246 denotes Mcm4
T5168 7380-7396 GO:0097373 denotes Mcm4/6/7 complex
T5169 7455-7470 SO:0000984 denotes single-stranded
T5170 7577-7592 SO:0000984 denotes single-stranded
T5171 7605-7609 GO:0005657 denotes fork
T5172 7645-7649 GO:0005657 denotes fork
T5173 7659-7663 GO:0005657 denotes fork
T5174 7691-7695 PR:000010246 denotes Mcm4
T5175 7691-7699 GO:0097373 denotes Mcm4/6/7
T5176 7746-7750 GO:0005657 denotes fork
T5177 7775-7781 SO:0000985 denotes duplex
T5178 7808-7823 SO:0000985 denotes double-stranded
T5179 7875-7879 PR:000010246 denotes Mcm4
T5180 7875-7883 GO:0097373 denotes Mcm4/6/7
T5181 7907-7911 PR:000023591 denotes PriA
T5182 7975-7979 GO:0005657 denotes fork
T5183 8005-8009 GO:0005657 denotes fork
T5184 8050-8054 GO:0005657 denotes fork
T5185 8103-8107 GO:0005657 denotes fork
T5186 8173-8177 PR:000010246 denotes Mcm4
T5187 8173-8189 GO:0097373 denotes Mcm4/6/7 complex
T5188 8199-8214 SO:0000984 denotes single-stranded
T5189 8280-8295 SO:0000984 denotes single-stranded
T5827 8306-8318 GO:0006272 denotes 3′-extension
T5828 8354-8358 PR:000010246 denotes Mcm4
T5829 8354-8362 GO:0097373 denotes Mcm4/6/7
T5830 8393-8405 GO:0006272 denotes 3′-extension
T5831 8428-8436 NCBITaxon:2157 denotes archaeal
T5832 8437-8440 GO:0042555 denotes Mcm
T5833 8464-8471 _FRAGMENT denotes fission
T5834 8484-8489 NCBITaxon:4894 denotes yeast
T5835 8476-8483 GO:0007114 denotes budding
T5836 8476-8489 NCBITaxon:4892 denotes budding yeast
T5837 8490-8503 GO:0042555 denotes Mcm complexes
T5838 8536-8548 GO:0006272 denotes 3′-extension
T5839 8650-8655 NCBITaxon:10088 denotes mouse
T5840 8656-8660 PR:000010246 denotes Mcm4
T5841 8656-8664 GO:0097373 denotes Mcm4/6/7
T5842 8716-8720 PR:000010246 denotes Mcm4
T5843 8716-8724 GO:0097373 denotes Mcm4/6/7
T5844 8750-8762 GO:0006272 denotes 3′-extension
T5845 8796-8808 GO:0006272 denotes 3′-extension
T5846 8897-8901 PR:000010246 denotes Mcm4
T5847 8897-8905 GO:0097373 denotes Mcm4/6/7
T5848 9002-9014 GO:0006272 denotes 3′-extension
T5849 9044-9049 PR:000010246 denotes Mcm 4
T5850 9044-9047 _FRAGMENT denotes Mcm
T5851 9050-9051 PR:000010248 denotes 6
T5852 9052-9053 PR:000010249 denotes 7
T5853 9044-9053 GO:0097373 denotes Mcm 4/6/7
T5854 9181-9185 PR:000010246 denotes Mcm4
T5855 9181-9189 GO:0097373 denotes Mcm4/6/7
T5856 9235-9247 GO:0006272 denotes 3′-extension
T5857 9283-9295 GO:0006273 denotes 5′-extension
T5858 9306-9310 PR:000010246 denotes Mcm4
T5859 9306-9314 GO:0097373 denotes Mcm4/6/7
T5860 9352-9355 GO:0042555 denotes Mcm
T5861 9407-9419 GO:0006272 denotes 3′-extension
T5862 9509-9513 GO:0005657 denotes fork
T5863 9620-9629 NCBITaxon:40674 denotes mammalian
T5864 9630-9633 GO:0042555 denotes Mcm
T5865 9699-9714 SO:0000984 denotes single-stranded
T6337 9775-9778 GO:0042555 denotes Mcm
T6338 9911-9914 GO:0042555 denotes Mcm
T6339 9950-9956 SO:0000985 denotes duplex
T6340 9961-9976 SO:0000984 denotes single-stranded
T6341 9997-9999 SO:0000028 denotes bp
T6342 10000-10006 SO:0000985 denotes duplex
T6343 10140-10145 NCBITaxon:10088 denotes mouse
T6344 10146-10150 PR:000010246 denotes Mcm4
T6345 10146-10154 GO:0097373 denotes Mcm4/6/7
T6346 10210-10214 PR:000010246 denotes Mcm4
T6347 10210-10218 GO:0097373 denotes Mcm4/6/7
T6348 10240-10248 GO:0097617 denotes annealed
T6349 10738-10741 GO:0042555 denotes Mcm
T6350 10801-10807 GO:0097617 denotes anneal
T6351 10846-10849 GO:0042555 denotes Mcm
T6352 11067-11073 SO:0000985 denotes duplex
T6353 11174-11178 PR:000010246 denotes Mcm4
T6354 11174-11190 GO:0097373 denotes Mcm4/6/7 complex
T6355 11313-11316 GO:0042555 denotes Mcm
T6356 11696-11699 GO:0042555 denotes Mcm
T6898 11770-11775 PR:000000084 denotes c-myc
T6899 11776-11782 SO:0000296 denotes origin
T6900 11792-11795 GO:0042555 denotes Mcm
T6901 11906-11911 NCBITaxon:9606 denotes human
T6902 11912-11920 PR:000009861 denotes lamin B2
T6903 11921-11927 SO:0000296 denotes origin
T6904 11994-11997 GO:0042555 denotes Mcm
T6905 12139-12150 GO:0006260 denotes replication
T6906 12139-12158 SO:0000296 denotes replication origins
T6907 12219-12222 GO:0042555 denotes Mcm
T6908 12299-12304 PR:000000084 denotes c-myc
T6909 12349-12362 GO:0032508 denotes DNA unwinding
T6910 12386-12391 NCBITaxon:9606 denotes human
T6911 12392-12397 PR:000000084 denotes c-myc
T6912 12398-12404 SO:0000296 denotes origin
T6913 12428-12433 PR:000000084 denotes c-myc
T6914 12467-12475 SO:0000984 denotes unpaired
T6915 12493-12498 PR:000000084 denotes c-myc
T6916 12548-12553 PR:000000084 denotes c-myc
T6917 12659-12664 PR:000000084 denotes c-myc
T6918 12665-12671 SO:0000296 denotes origin
T6919 12747-12751 PR:000010246 denotes Mcm4
T6920 12747-12755 GO:0097373 denotes Mcm4/6/7
T6921 12770-12778 PR:000009861 denotes lamin B2
T6922 12800-12805 PR:000000084 denotes c-myc
T6923 12826-12831 PR:000000084 denotes c-myc
T6924 12920-12925 PR:000000084 denotes c-myc
T6925 12926-12932 SO:0000296 denotes origin
T6926 12979-12982 GO:0042555 denotes Mcm
T6927 13073-13077 PR:000010246 denotes Mcm4
T6928 13073-13081 GO:0097373 denotes Mcm4/6/7
T6929 13234-13237 GO:0042555 denotes Mcm
T6930 13280-13284 PR:000010246 denotes MCM4
T6931 13280-13288 GO:0097373 denotes MCM4/6/7
T6932 13352-13357 PR:000000084 denotes c-myc
T6933 13375-13380 PR:000000084 denotes c-myc
T6934 13425-13433 PR:000009861 denotes lamin B2
T6935 13636-13639 GO:0042555 denotes Mcm
T7529 13680-13693 GO:0032508 denotes DNA unwinding
T7530 13697-13701 PR:000010246 denotes Mcm4
T7531 13697-13705 GO:0097373 denotes Mcm4/6/7
T7532 13751-13757 SO:0000985 denotes duplex
T7533 13805-13820 SO:0000984 denotes single-stranded
T7534 13879-13882 GO:0042555 denotes Mcm
T7535 13972-13995 GO:0032508 denotes unwinding of duplex DNA
T7536 13985-13991 SO:0000985 denotes duplex
T7537 14067-14073 SO:0000985 denotes duplex
T7538 14174-14178 GO:0005657 denotes fork
T7539 14193-14197 GO:0005657 denotes fork
T7540 14235-14241 SO:0000985 denotes duplex
T7541 14345-14349 PR:000010246 denotes Mcm4
T7542 14345-14353 GO:0097373 denotes Mcm4/6/7
T7543 14371-14375 GO:0005657 denotes fork
T7544 14460-14464 PR:000010246 denotes Mcm4
T7545 14460-14468 GO:0097373 denotes Mcm4/6/7
T7546 14478-14493 SO:0000984 denotes single-stranded
T7547 14536-14540 GO:0005657 denotes fork
T7548 14573-14577 PR:000010246 denotes Mcm4
T7549 14573-14581 GO:0097373 denotes Mcm4/6/7
T7550 14612-14616 NCBITaxon:10633 denotes SV40
T7551 14619-14626 CHEBI:59132 denotes antigen
T7552 14777-14781 GO:0005657 denotes fork
T7553 14800-14804 GO:0005657 denotes fork
T7554 14905-14911 SO:0000985 denotes duplex
T7555 14923-14927 GO:0005657 denotes fork
T7556 14945-14949 GO:0005657 denotes fork
T7557 14967-14971 GO:0005657 denotes fork
T7558 14992-14996 GO:0005657 denotes fork
T7559 15044-15050 SO:0000985 denotes duplex
T7560 15187-15193 SO:0000985 denotes duplex
T7561 15203-15218 SO:0000984 denotes single-stranded
T7562 15219-15227 SO:0000988 denotes circular
T7563 15289-15295 SO:0000985 denotes duplex
T7564 15322-15328 SO:0000985 denotes duplex
T7565 15373-15379 SO:0000440 denotes vector
T7566 15462-15473 GO:0097617 denotes hybridizing
T7567 15509-15513 PR:000010246 denotes Mcm4
T7568 15509-15517 GO:0097373 denotes Mcm4/6/7
T7569 15540-15546 SO:0000985 denotes duplex
T7570 15891-15895 PR:000010246 denotes Mcm4
T7571 15891-15907 GO:0097373 denotes Mcm4/6/7 complex
T7572 15950-15954 GO:0005657 denotes fork
T7573 15982-15988 SO:0000985 denotes duplex
T7574 16032-16035 GO:0042555 denotes Mcm
T7575 16110-16115 SO:0000028 denotes pairs
T7576 16148-16154 SO:0000985 denotes duplex
T7577 16201-16205 PR:000010246 denotes Mcm4
T7578 16201-16209 GO:0097373 denotes Mcm4/6/7
T7579 16226-16230 PR:000010246 denotes Mcm4
T7580 16226-16234 GO:0097373 denotes Mcm4/6/7
T7581 16299-16310 SO:0000028 denotes base-paired
T7582 16389-16393 GO:0005657 denotes fork
T7583 16498-16507 SO:0000028 denotes base pair
T7584 16538-16547 SO:0000028 denotes base pair
T7585 16551-16557 SO:0000985 denotes duplex
T7586 16622-16631 SO:0000028 denotes base pair
T7587 16666-16670 GO:0005657 denotes fork
T7588 16737-16743 SO:0000985 denotes duplex
T7589 16769-16773 PR:000010246 denotes Mcm4
T7590 16769-16777 GO:0097373 denotes Mcm4/6/7
T7591 16851-16855 GO:0005657 denotes fork
T7592 16917-16921 GO:0005657 denotes fork
T7593 16992-16996 GO:0005657 denotes fork
T7594 17053-17059 SO:0000985 denotes duplex
T7595 17088-17097 SO:0000028 denotes base pair
T7596 17131-17135 PR:000010246 denotes Mcm4
T7597 17131-17139 GO:0097373 denotes Mcm4/6/7
R2614 T3971 T3970 _lexicallyChainedTo complexes,Formation of
R3143 T4673 T4672 _lexicallyChainedTo DNA,unwinding of
R3462 T5140 T5139 _lexicallyChainedTo extension,3′-
R3961 T5834 T5833 _lexicallyChainedTo yeast,fission
R3962 T5851 T5850 _lexicallyChainedTo 6,Mcm
R3963 T5852 T5850 _lexicallyChainedTo 7,Mcm

2_test

Id Subject Object Predicate Lexical cue
15917436-14609960-76775508 226-228 14609960 denotes 13
15917436-9765408-76775509 1846-1848 9765408 denotes 21
15917436-14609960-76775510 2945-2947 14609960 denotes 13
15917436-14609960-76775511 3947-3949 14609960 denotes 13
15917436-9765408-76775512 3950-3952 9765408 denotes 21
15917436-14609960-76775513 5572-5574 14609960 denotes 13
15917436-12151393-76775514 7094-7096 12151393 denotes 23
15917436-12917421-76775515 7097-7099 12917421 denotes 25
15917436-9305914-76775516 7885-7887 9305914 denotes 10
15917436-12917421-76775517 8136-8138 12917421 denotes 25
15917436-11136247-76775518 8505-8507 11136247 denotes 14
15917436-13679365-76775519 8508-8510 13679365 denotes 26
15917436-12975364-76775520 8511-8513 12975364 denotes 27
15917436-14609960-76775521 8973-8975 14609960 denotes 13
15917436-14609960-76775522 11464-11466 14609960 denotes 13
15917436-14609960-76775523 12097-12099 14609960 denotes 13
15917436-10720330-76775524 12100-12102 10720330 denotes 28
15917436-7935372-76775525 12455-12457 7935372 denotes 29
15917436-12589000-76775526 12458-12460 12589000 denotes 30
15917436-7935372-76775527 12673-12675 7935372 denotes 29
15917436-12589000-76775528 12742-12744 12589000 denotes 30
15917436-14609960-76775529 13674-13676 14609960 denotes 13
15917436-14609960-76775530 15657-15659 14609960 denotes 13
15917436-4080553-76775531 16633-16635 4080553 denotes 31