Id |
Subject |
Object |
Predicate |
Lexical cue |
T3477 |
302-311 |
VBD |
denotes |
conducted |
T3428 |
9-13 |
NN |
denotes |
Mcm4 |
T3429 |
18-25 |
NN |
denotes |
complex |
T3430 |
13-14 |
HYPH |
denotes |
/ |
T3431 |
14-15 |
CD |
denotes |
6 |
T3432 |
15-16 |
HYPH |
denotes |
/ |
T3433 |
16-17 |
CD |
denotes |
7 |
T3434 |
36-45 |
VBZ |
denotes |
interacts |
T3435 |
26-35 |
RB |
denotes |
primarily |
T3436 |
46-50 |
IN |
denotes |
with |
T3437 |
51-54 |
DT |
denotes |
the |
T3438 |
75-82 |
NN |
denotes |
segment |
T3439 |
55-61 |
JJ |
denotes |
single |
T3440 |
62-70 |
VBN |
denotes |
stranded |
T3441 |
61-62 |
HYPH |
denotes |
- |
T3442 |
71-74 |
NN |
denotes |
DNA |
T3443 |
82-230 |
sentence |
denotes |
Mcm4/6/7 binds to ‘bubble’ DNA substrates and unwinds the duplex segments when the central single-stranded segment contains thymine stretches (13). |
T3444 |
83-87 |
NN |
denotes |
Mcm4 |
T3445 |
92-97 |
VBZ |
denotes |
binds |
T3446 |
87-88 |
HYPH |
denotes |
/ |
T3447 |
88-89 |
CD |
denotes |
6 |
T3448 |
89-90 |
HYPH |
denotes |
/ |
T3449 |
90-91 |
CD |
denotes |
7 |
T3450 |
98-100 |
IN |
denotes |
to |
T3451 |
101-102 |
`` |
denotes |
‘ |
T3452 |
114-124 |
NNS |
denotes |
substrates |
T3453 |
102-108 |
NN |
denotes |
bubble |
T3454 |
108-109 |
'' |
denotes |
’ |
T3455 |
110-113 |
NN |
denotes |
DNA |
T3456 |
125-128 |
CC |
denotes |
and |
T3457 |
129-136 |
VBZ |
denotes |
unwinds |
T3458 |
137-140 |
DT |
denotes |
the |
T3459 |
148-156 |
NNS |
denotes |
segments |
T3460 |
141-147 |
NN |
denotes |
duplex |
T3461 |
157-161 |
WRB |
denotes |
when |
T3462 |
198-206 |
VBZ |
denotes |
contains |
T3463 |
162-165 |
DT |
denotes |
the |
T3464 |
190-197 |
NN |
denotes |
segment |
T3465 |
166-173 |
JJ |
denotes |
central |
T3466 |
174-180 |
JJ |
denotes |
single |
T3467 |
181-189 |
VBN |
denotes |
stranded |
T3468 |
180-181 |
HYPH |
denotes |
- |
T3469 |
207-214 |
NN |
denotes |
thymine |
T3470 |
215-224 |
NNS |
denotes |
stretches |
T3471 |
225-226 |
-LRB- |
denotes |
( |
T3472 |
226-228 |
CD |
denotes |
13 |
T3473 |
228-229 |
-RRB- |
denotes |
) |
T3474 |
229-230 |
. |
denotes |
. |
T3475 |
230-489 |
sentence |
denotes |
In order to examine the mode of binding of Mcm4/6/7 on bubble DNAs, we conducted nuclease protection assays using labeled bubble substrate DNAs and Mcm4/6/7 in the presence of ATP-γ-S which permits binding to substrate DNA but does not mobilize the helicase. |
T3476 |
231-233 |
IN |
denotes |
In |
T3478 |
234-239 |
NN |
denotes |
order |
T3479 |
240-242 |
TO |
denotes |
to |
T3480 |
243-250 |
VB |
denotes |
examine |
T3481 |
251-254 |
DT |
denotes |
the |
T3482 |
255-259 |
NN |
denotes |
mode |
T3483 |
260-262 |
IN |
denotes |
of |
T3484 |
263-270 |
NN |
denotes |
binding |
T3485 |
271-273 |
IN |
denotes |
of |
T3486 |
274-278 |
NN |
denotes |
Mcm4 |
T3487 |
278-279 |
HYPH |
denotes |
/ |
T3488 |
279-280 |
CD |
denotes |
6 |
T3489 |
280-281 |
HYPH |
denotes |
/ |
T3490 |
281-282 |
CD |
denotes |
7 |
T3491 |
283-285 |
IN |
denotes |
on |
T3492 |
286-292 |
NN |
denotes |
bubble |
T3493 |
293-297 |
NNS |
denotes |
DNAs |
T3494 |
297-299 |
, |
denotes |
, |
T3495 |
299-301 |
PRP |
denotes |
we |
T3496 |
312-320 |
NN |
denotes |
nuclease |
T3497 |
332-338 |
NNS |
denotes |
assays |
T3498 |
321-331 |
NN |
denotes |
protection |
T3499 |
339-344 |
VBG |
denotes |
using |
T3500 |
345-352 |
VBN |
denotes |
labeled |
T3501 |
370-374 |
NNS |
denotes |
DNAs |
T3502 |
353-359 |
NN |
denotes |
bubble |
T3503 |
360-369 |
NN |
denotes |
substrate |
T3504 |
375-378 |
CC |
denotes |
and |
T3505 |
379-383 |
NN |
denotes |
Mcm4 |
T3506 |
383-384 |
HYPH |
denotes |
/ |
T3507 |
384-385 |
CD |
denotes |
6 |
T3508 |
385-386 |
HYPH |
denotes |
/ |
T3509 |
386-387 |
CD |
denotes |
7 |
T3510 |
388-390 |
IN |
denotes |
in |
T3511 |
391-394 |
DT |
denotes |
the |
T3512 |
395-403 |
NN |
denotes |
presence |
T3513 |
404-406 |
IN |
denotes |
of |
T3514 |
407-410 |
NN |
denotes |
ATP |
T3515 |
413-414 |
NN |
denotes |
S |
T3516 |
410-411 |
HYPH |
denotes |
- |
T3517 |
411-412 |
SYM |
denotes |
γ |
T3518 |
412-413 |
HYPH |
denotes |
- |
T3519 |
415-420 |
WDT |
denotes |
which |
T3520 |
421-428 |
VBZ |
denotes |
permits |
T3521 |
429-436 |
NN |
denotes |
binding |
T3522 |
437-439 |
IN |
denotes |
to |
T3523 |
440-449 |
NN |
denotes |
substrate |
T3524 |
450-453 |
NN |
denotes |
DNA |
T3525 |
454-457 |
CC |
denotes |
but |
T3526 |
458-462 |
VBZ |
denotes |
does |
T3527 |
467-475 |
VB |
denotes |
mobilize |
T3528 |
463-466 |
RB |
denotes |
not |
T3529 |
476-479 |
DT |
denotes |
the |
T3530 |
480-488 |
NN |
denotes |
helicase |
T3531 |
488-489 |
. |
denotes |
. |
T3532 |
489-760 |
sentence |
denotes |
At an optimum concentration of DNase I, strong cleavages were detected on the 21 bp duplex regions at both ends of the substrates, whereas weaker cleavages were detected on the central single-stranded region, consistent with preference of DNase I to double-stranded DNA. |
T3533 |
490-492 |
IN |
denotes |
At |
T3534 |
552-560 |
VBN |
denotes |
detected |
T3535 |
493-495 |
DT |
denotes |
an |
T3536 |
504-517 |
NN |
denotes |
concentration |
T3537 |
496-503 |
JJ |
denotes |
optimum |
T3538 |
518-520 |
IN |
denotes |
of |
T3539 |
521-526 |
NN |
denotes |
DNase |
T3540 |
527-528 |
CD |
denotes |
I |
T3541 |
528-530 |
, |
denotes |
, |
T3542 |
530-536 |
JJ |
denotes |
strong |
T3543 |
537-546 |
NNS |
denotes |
cleavages |
T3544 |
547-551 |
VBD |
denotes |
were |
T3545 |
561-563 |
IN |
denotes |
on |
T3546 |
564-567 |
DT |
denotes |
the |
T3547 |
581-588 |
NNS |
denotes |
regions |
T3548 |
568-570 |
CD |
denotes |
21 |
T3549 |
571-573 |
NN |
denotes |
bp |
T3550 |
574-580 |
NN |
denotes |
duplex |
T3551 |
589-591 |
IN |
denotes |
at |
T3552 |
592-596 |
DT |
denotes |
both |
T3553 |
597-601 |
NNS |
denotes |
ends |
T3554 |
602-604 |
IN |
denotes |
of |
T3555 |
605-608 |
DT |
denotes |
the |
T3556 |
609-619 |
NNS |
denotes |
substrates |
T3557 |
619-621 |
, |
denotes |
, |
T3558 |
621-628 |
IN |
denotes |
whereas |
T3559 |
651-659 |
VBN |
denotes |
detected |
T3560 |
629-635 |
JJR |
denotes |
weaker |
T3561 |
636-645 |
NNS |
denotes |
cleavages |
T3562 |
646-650 |
VBD |
denotes |
were |
T3563 |
660-662 |
IN |
denotes |
on |
T3564 |
663-666 |
DT |
denotes |
the |
T3565 |
691-697 |
NN |
denotes |
region |
T3566 |
667-674 |
JJ |
denotes |
central |
T3567 |
675-681 |
JJ |
denotes |
single |
T3568 |
682-690 |
VBN |
denotes |
stranded |
T3569 |
681-682 |
HYPH |
denotes |
- |
T3570 |
697-699 |
, |
denotes |
, |
T3571 |
699-709 |
JJ |
denotes |
consistent |
T3572 |
710-714 |
IN |
denotes |
with |
T3573 |
715-725 |
NN |
denotes |
preference |
T3574 |
726-728 |
IN |
denotes |
of |
T3575 |
729-734 |
NN |
denotes |
DNase |
T3576 |
735-736 |
CD |
denotes |
I |
T3577 |
737-739 |
IN |
denotes |
to |
T3578 |
740-746 |
JJ |
denotes |
double |
T3579 |
747-755 |
VBN |
denotes |
stranded |
T3580 |
746-747 |
HYPH |
denotes |
- |
T3581 |
756-759 |
NN |
denotes |
DNA |
T3582 |
759-760 |
. |
denotes |
. |
T3583 |
760-1018 |
sentence |
denotes |
With the Bub66/T-rich substrate, strong protection was detected on the entire single-stranded regions of both top and bottom strands with increasing concentration of Mcm4/6/7, consistent with high affinity of Mcm4/6/7 to T-rich bubble sequences (Figure 1A). |
T3584 |
761-765 |
IN |
denotes |
With |
T3585 |
816-824 |
VBN |
denotes |
detected |
T3586 |
766-769 |
DT |
denotes |
the |
T3587 |
783-792 |
NN |
denotes |
substrate |
T3588 |
770-775 |
NN |
denotes |
Bub66 |
T3589 |
775-776 |
HYPH |
denotes |
/ |
T3590 |
776-777 |
NN |
denotes |
T |
T3591 |
777-778 |
HYPH |
denotes |
- |
T3592 |
778-782 |
JJ |
denotes |
rich |
T3593 |
792-794 |
, |
denotes |
, |
T3594 |
794-800 |
JJ |
denotes |
strong |
T3595 |
801-811 |
NN |
denotes |
protection |
T3596 |
812-815 |
VBD |
denotes |
was |
T3597 |
825-827 |
IN |
denotes |
on |
T3598 |
828-831 |
DT |
denotes |
the |
T3599 |
855-862 |
NNS |
denotes |
regions |
T3600 |
832-838 |
JJ |
denotes |
entire |
T3601 |
839-845 |
JJ |
denotes |
single |
T3602 |
846-854 |
VBN |
denotes |
stranded |
T3603 |
845-846 |
HYPH |
denotes |
- |
T3604 |
863-865 |
IN |
denotes |
of |
T3605 |
866-870 |
CC |
denotes |
both |
T3606 |
871-874 |
JJ |
denotes |
top |
T3607 |
886-893 |
NNS |
denotes |
strands |
T3608 |
875-878 |
CC |
denotes |
and |
T3609 |
879-885 |
JJ |
denotes |
bottom |
T3610 |
894-898 |
IN |
denotes |
with |
T3611 |
899-909 |
VBG |
denotes |
increasing |
T3612 |
910-923 |
NN |
denotes |
concentration |
T3613 |
924-926 |
IN |
denotes |
of |
T3614 |
927-931 |
NN |
denotes |
Mcm4 |
T3615 |
931-932 |
HYPH |
denotes |
/ |
T3616 |
932-933 |
CD |
denotes |
6 |
T3617 |
933-934 |
HYPH |
denotes |
/ |
T3618 |
934-935 |
CD |
denotes |
7 |
T3619 |
935-937 |
, |
denotes |
, |
T3620 |
937-947 |
JJ |
denotes |
consistent |
T3621 |
948-952 |
IN |
denotes |
with |
T3622 |
953-957 |
JJ |
denotes |
high |
T3623 |
958-966 |
NN |
denotes |
affinity |
T3624 |
967-969 |
IN |
denotes |
of |
T3625 |
970-974 |
NN |
denotes |
Mcm4 |
T3626 |
974-975 |
HYPH |
denotes |
/ |
T3627 |
975-976 |
CD |
denotes |
6 |
T3628 |
976-977 |
HYPH |
denotes |
/ |
T3629 |
977-978 |
CD |
denotes |
7 |
T3630 |
979-981 |
IN |
denotes |
to |
T3631 |
982-983 |
NN |
denotes |
T |
T3632 |
996-1005 |
NNS |
denotes |
sequences |
T3633 |
983-984 |
HYPH |
denotes |
- |
T3634 |
984-988 |
JJ |
denotes |
rich |
T3635 |
989-995 |
NN |
denotes |
bubble |
T3636 |
1006-1007 |
-LRB- |
denotes |
( |
T3637 |
1014-1016 |
NN |
denotes |
1A |
T3638 |
1007-1013 |
NN |
denotes |
Figure |
T3639 |
1016-1017 |
-RRB- |
denotes |
) |
T3640 |
1017-1018 |
. |
denotes |
. |
T3641 |
1018-1180 |
sentence |
denotes |
Similar, but less significant protection was detected on the single-stranded DNA segment with P1 nucleases (Figure 1A), which is specific to single-stranded DNA. |
T3642 |
1019-1026 |
JJ |
denotes |
Similar |
T3643 |
1049-1059 |
NN |
denotes |
protection |
T3644 |
1026-1028 |
, |
denotes |
, |
T3645 |
1028-1031 |
CC |
denotes |
but |
T3646 |
1032-1036 |
RBR |
denotes |
less |
T3647 |
1037-1048 |
JJ |
denotes |
significant |
T3648 |
1064-1072 |
VBN |
denotes |
detected |
T3649 |
1060-1063 |
VBD |
denotes |
was |
T3650 |
1073-1075 |
IN |
denotes |
on |
T3651 |
1076-1079 |
DT |
denotes |
the |
T3652 |
1100-1107 |
NN |
denotes |
segment |
T3653 |
1080-1086 |
JJ |
denotes |
single |
T3654 |
1087-1095 |
VBN |
denotes |
stranded |
T3655 |
1086-1087 |
HYPH |
denotes |
- |
T3656 |
1096-1099 |
NN |
denotes |
DNA |
T3657 |
1108-1112 |
IN |
denotes |
with |
T3658 |
1113-1115 |
NN |
denotes |
P1 |
T3659 |
1116-1125 |
NNS |
denotes |
nucleases |
T3660 |
1126-1127 |
-LRB- |
denotes |
( |
T3661 |
1134-1136 |
NN |
denotes |
1A |
T3662 |
1127-1133 |
NN |
denotes |
Figure |
T3663 |
1136-1137 |
-RRB- |
denotes |
) |
T3664 |
1137-1139 |
, |
denotes |
, |
T3665 |
1139-1144 |
WDT |
denotes |
which |
T3666 |
1145-1147 |
VBZ |
denotes |
is |
T3667 |
1148-1156 |
JJ |
denotes |
specific |
T3668 |
1157-1159 |
IN |
denotes |
to |
T3669 |
1160-1166 |
JJ |
denotes |
single |
T3670 |
1167-1175 |
VBN |
denotes |
stranded |
T3671 |
1166-1167 |
HYPH |
denotes |
- |
T3672 |
1176-1179 |
NN |
denotes |
DNA |
T3673 |
1179-1180 |
. |
denotes |
. |
T3674 |
1180-1311 |
sentence |
denotes |
The results indicate that the Mcm complex is loaded onto bubble DNA through binding to both strands of the single-stranded region. |
T3675 |
1181-1184 |
DT |
denotes |
The |
T3676 |
1185-1192 |
NNS |
denotes |
results |
T3677 |
1193-1201 |
VBP |
denotes |
indicate |
T3678 |
1202-1206 |
IN |
denotes |
that |
T3679 |
1226-1232 |
VBN |
denotes |
loaded |
T3680 |
1207-1210 |
DT |
denotes |
the |
T3681 |
1215-1222 |
NN |
denotes |
complex |
T3682 |
1211-1214 |
NN |
denotes |
Mcm |
T3683 |
1223-1225 |
VBZ |
denotes |
is |
T3684 |
1233-1237 |
IN |
denotes |
onto |
T3685 |
1238-1244 |
NN |
denotes |
bubble |
T3686 |
1245-1248 |
NN |
denotes |
DNA |
T3687 |
1249-1256 |
IN |
denotes |
through |
T3688 |
1257-1264 |
NN |
denotes |
binding |
T3689 |
1265-1267 |
IN |
denotes |
to |
T3690 |
1268-1272 |
DT |
denotes |
both |
T3691 |
1273-1280 |
NNS |
denotes |
strands |
T3692 |
1281-1283 |
IN |
denotes |
of |
T3693 |
1284-1287 |
DT |
denotes |
the |
T3694 |
1304-1310 |
NN |
denotes |
region |
T3695 |
1288-1294 |
JJ |
denotes |
single |
T3696 |
1295-1303 |
VBN |
denotes |
stranded |
T3697 |
1294-1295 |
HYPH |
denotes |
- |
T3698 |
1310-1311 |
. |
denotes |
. |
T3699 |
1311-1585 |
sentence |
denotes |
Careful examination of Mcm4/6/7 footprints on a bubble indicated strong protection on the 5′-half of the top strand and moderate protection on the remaining 3′-half, as well as on several base-pair duplex segment adjacent to the branch point (Figure 1A and data not shown). |
T3700 |
1312-1319 |
JJ |
denotes |
Careful |
T3701 |
1320-1331 |
NN |
denotes |
examination |
T3702 |
1367-1376 |
VBD |
denotes |
indicated |
T3703 |
1332-1334 |
IN |
denotes |
of |
T3704 |
1335-1339 |
NN |
denotes |
Mcm4 |
T3705 |
1344-1354 |
NNS |
denotes |
footprints |
T3706 |
1339-1340 |
HYPH |
denotes |
/ |
T3707 |
1340-1341 |
CD |
denotes |
6 |
T3708 |
1341-1342 |
HYPH |
denotes |
/ |
T3709 |
1342-1343 |
CD |
denotes |
7 |
T3710 |
1355-1357 |
IN |
denotes |
on |
T3711 |
1358-1359 |
DT |
denotes |
a |
T3712 |
1360-1366 |
NN |
denotes |
bubble |
T3713 |
1377-1383 |
JJ |
denotes |
strong |
T3714 |
1384-1394 |
NN |
denotes |
protection |
T3715 |
1395-1397 |
IN |
denotes |
on |
T3716 |
1398-1401 |
DT |
denotes |
the |
T3717 |
1405-1409 |
NN |
denotes |
half |
T3718 |
1402-1403 |
CD |
denotes |
5 |
T3719 |
1403-1404 |
SYM |
denotes |
′ |
T3720 |
1404-1405 |
HYPH |
denotes |
- |
T3721 |
1410-1412 |
IN |
denotes |
of |
T3722 |
1413-1416 |
DT |
denotes |
the |
T3723 |
1421-1427 |
NN |
denotes |
strand |
T3724 |
1417-1420 |
JJ |
denotes |
top |
T3725 |
1428-1431 |
CC |
denotes |
and |
T3726 |
1432-1440 |
JJ |
denotes |
moderate |
T3727 |
1441-1451 |
NN |
denotes |
protection |
T3728 |
1452-1454 |
IN |
denotes |
on |
T3729 |
1455-1458 |
DT |
denotes |
the |
T3730 |
1472-1476 |
NN |
denotes |
half |
T3731 |
1459-1468 |
VBG |
denotes |
remaining |
T3732 |
1469-1470 |
CD |
denotes |
3 |
T3733 |
1470-1471 |
SYM |
denotes |
′ |
T3734 |
1471-1472 |
HYPH |
denotes |
- |
T3735 |
1476-1478 |
, |
denotes |
, |
T3736 |
1478-1480 |
RB |
denotes |
as |
T3737 |
1486-1488 |
IN |
denotes |
as |
T3738 |
1481-1485 |
RB |
denotes |
well |
T3739 |
1489-1491 |
IN |
denotes |
on |
T3740 |
1492-1499 |
JJ |
denotes |
several |
T3741 |
1517-1524 |
NN |
denotes |
segment |
T3742 |
1500-1504 |
NN |
denotes |
base |
T3743 |
1505-1509 |
NN |
denotes |
pair |
T3744 |
1504-1505 |
HYPH |
denotes |
- |
T3745 |
1510-1516 |
NN |
denotes |
duplex |
T3746 |
1525-1533 |
JJ |
denotes |
adjacent |
T3747 |
1534-1536 |
IN |
denotes |
to |
T3748 |
1537-1540 |
DT |
denotes |
the |
T3749 |
1548-1553 |
NN |
denotes |
point |
T3750 |
1541-1547 |
NN |
denotes |
branch |
T3751 |
1554-1555 |
-LRB- |
denotes |
( |
T3752 |
1562-1564 |
NN |
denotes |
1A |
T3753 |
1555-1561 |
NN |
denotes |
Figure |
T3754 |
1565-1568 |
CC |
denotes |
and |
T3755 |
1569-1573 |
NNS |
denotes |
data |
T3756 |
1574-1577 |
RB |
denotes |
not |
T3757 |
1578-1583 |
VBN |
denotes |
shown |
T3758 |
1583-1584 |
-RRB- |
denotes |
) |
T3759 |
1584-1585 |
. |
denotes |
. |
T3760 |
1585-1657 |
sentence |
denotes |
A similar pattern of protection was observed also on the bottom strand. |
T3761 |
1586-1587 |
DT |
denotes |
A |
T3762 |
1596-1603 |
NN |
denotes |
pattern |
T3763 |
1588-1595 |
JJ |
denotes |
similar |
T3764 |
1622-1630 |
VBN |
denotes |
observed |
T3765 |
1604-1606 |
IN |
denotes |
of |
T3766 |
1607-1617 |
NN |
denotes |
protection |
T3767 |
1618-1621 |
VBD |
denotes |
was |
T3768 |
1631-1635 |
RB |
denotes |
also |
T3769 |
1636-1638 |
IN |
denotes |
on |
T3770 |
1639-1642 |
DT |
denotes |
the |
T3771 |
1650-1656 |
NN |
denotes |
strand |
T3772 |
1643-1649 |
JJ |
denotes |
bottom |
T3773 |
1656-1657 |
. |
denotes |
. |
T3774 |
1657-1850 |
sentence |
denotes |
This suggests that Mcm4/6/7 may bind to a replication bubble substrate with a 2-fold symmetry as a double hexamer (Figure 1A, see the lower scheme), in a manner similar to SV40 T-antigen (21). |
T3775 |
1658-1662 |
DT |
denotes |
This |
T3776 |
1663-1671 |
VBZ |
denotes |
suggests |
T3777 |
1672-1676 |
IN |
denotes |
that |
T3778 |
1690-1694 |
VB |
denotes |
bind |
T3779 |
1677-1681 |
NN |
denotes |
Mcm4 |
T3780 |
1681-1682 |
HYPH |
denotes |
/ |
T3781 |
1682-1683 |
CD |
denotes |
6 |
T3782 |
1683-1684 |
HYPH |
denotes |
/ |
T3783 |
1684-1685 |
CD |
denotes |
7 |
T3784 |
1686-1689 |
MD |
denotes |
may |
T3785 |
1695-1697 |
IN |
denotes |
to |
T3786 |
1698-1699 |
DT |
denotes |
a |
T3787 |
1719-1728 |
NN |
denotes |
substrate |
T3788 |
1700-1711 |
NN |
denotes |
replication |
T3789 |
1712-1718 |
NN |
denotes |
bubble |
T3790 |
1729-1733 |
IN |
denotes |
with |
T3791 |
1734-1735 |
DT |
denotes |
a |
T3792 |
1743-1751 |
NN |
denotes |
symmetry |
T3793 |
1736-1742 |
CD |
denotes |
2-fold |
T3794 |
1752-1754 |
IN |
denotes |
as |
T3795 |
1755-1756 |
DT |
denotes |
a |
T3796 |
1764-1771 |
NN |
denotes |
hexamer |
T3797 |
1757-1763 |
JJ |
denotes |
double |
T3798 |
1772-1773 |
-LRB- |
denotes |
( |
T3799 |
1780-1782 |
NN |
denotes |
1A |
T3800 |
1773-1779 |
NN |
denotes |
Figure |
T3801 |
1782-1784 |
, |
denotes |
, |
T3802 |
1784-1787 |
VBP |
denotes |
see |
T3803 |
1788-1791 |
DT |
denotes |
the |
T3804 |
1798-1804 |
NN |
denotes |
scheme |
T3805 |
1792-1797 |
JJ |
denotes |
lower |
T3806 |
1804-1805 |
-RRB- |
denotes |
) |
T3807 |
1805-1807 |
, |
denotes |
, |
T3808 |
1807-1809 |
IN |
denotes |
in |
T3809 |
1810-1811 |
DT |
denotes |
a |
T3810 |
1812-1818 |
NN |
denotes |
manner |
T3811 |
1819-1826 |
JJ |
denotes |
similar |
T3812 |
1827-1829 |
IN |
denotes |
to |
T3813 |
1830-1834 |
NN |
denotes |
SV40 |
T3814 |
1837-1844 |
NN |
denotes |
antigen |
T3815 |
1835-1836 |
NN |
denotes |
T |
T3816 |
1836-1837 |
HYPH |
denotes |
- |
T3817 |
1845-1846 |
-LRB- |
denotes |
( |
T3818 |
1846-1848 |
CD |
denotes |
21 |
T3819 |
1848-1849 |
-RRB- |
denotes |
) |
T3820 |
1849-1850 |
. |
denotes |
. |
T3821 |
1850-1941 |
sentence |
denotes |
Nuclease protection assays were conducted also on a T-tailed Y-fork structure (Figure 1B). |
T3822 |
1851-1859 |
NN |
denotes |
Nuclease |
T3823 |
1860-1870 |
NN |
denotes |
protection |
T3824 |
1871-1877 |
NNS |
denotes |
assays |
T3825 |
1883-1892 |
VBN |
denotes |
conducted |
T3826 |
1878-1882 |
VBD |
denotes |
were |
T3827 |
1893-1897 |
RB |
denotes |
also |
T3828 |
1898-1900 |
IN |
denotes |
on |
T3829 |
1901-1902 |
DT |
denotes |
a |
T3830 |
1919-1928 |
NN |
denotes |
structure |
T3831 |
1903-1904 |
NN |
denotes |
T |
T3832 |
1905-1911 |
VBN |
denotes |
tailed |
T3833 |
1904-1905 |
HYPH |
denotes |
- |
T3834 |
1912-1913 |
NN |
denotes |
Y |
T3835 |
1914-1918 |
NN |
denotes |
fork |
T3836 |
1913-1914 |
HYPH |
denotes |
- |
T3837 |
1929-1930 |
-LRB- |
denotes |
( |
T3838 |
1937-1939 |
NN |
denotes |
1B |
T3839 |
1930-1936 |
NN |
denotes |
Figure |
T3840 |
1939-1940 |
-RRB- |
denotes |
) |
T3841 |
1940-1941 |
. |
denotes |
. |
T3842 |
1941-2113 |
sentence |
denotes |
Not only the single-stranded tail region but also the 7 bp duplex DNA adjacent to the duplex-to-single-strand junction were protected by Mcm binding from DNaseI digestion. |
T3843 |
1942-1945 |
RB |
denotes |
Not |
T3844 |
1976-1982 |
NN |
denotes |
region |
T3845 |
1946-1950 |
RB |
denotes |
only |
T3846 |
1951-1954 |
DT |
denotes |
the |
T3847 |
1955-1961 |
JJ |
denotes |
single |
T3848 |
1962-1970 |
VBN |
denotes |
stranded |
T3849 |
1961-1962 |
HYPH |
denotes |
- |
T3850 |
1971-1975 |
NN |
denotes |
tail |
T3851 |
2066-2075 |
VBN |
denotes |
protected |
T3852 |
1983-1986 |
CC |
denotes |
but |
T3853 |
1987-1991 |
RB |
denotes |
also |
T3854 |
1992-1995 |
DT |
denotes |
the |
T3855 |
2008-2011 |
NN |
denotes |
DNA |
T3856 |
1996-1997 |
CD |
denotes |
7 |
T3857 |
1998-2000 |
NN |
denotes |
bp |
T3858 |
2001-2007 |
NN |
denotes |
duplex |
T3859 |
2012-2020 |
JJ |
denotes |
adjacent |
T3860 |
2021-2023 |
IN |
denotes |
to |
T3861 |
2024-2027 |
DT |
denotes |
the |
T3862 |
2052-2060 |
NN |
denotes |
junction |
T3863 |
2028-2034 |
NN |
denotes |
duplex |
T3864 |
2034-2035 |
HYPH |
denotes |
- |
T3865 |
2035-2037 |
IN |
denotes |
to |
T3866 |
2037-2038 |
HYPH |
denotes |
- |
T3867 |
2038-2044 |
JJ |
denotes |
single |
T3868 |
2045-2051 |
NN |
denotes |
strand |
T3869 |
2044-2045 |
HYPH |
denotes |
- |
T3870 |
2061-2065 |
VBD |
denotes |
were |
T3871 |
2076-2078 |
IN |
denotes |
by |
T3872 |
2079-2082 |
NN |
denotes |
Mcm |
T3873 |
2083-2090 |
NN |
denotes |
binding |
T3874 |
2091-2095 |
IN |
denotes |
from |
T3875 |
2096-2102 |
NN |
denotes |
DNaseI |
T3876 |
2103-2112 |
NN |
denotes |
digestion |
T3877 |
2112-2113 |
. |
denotes |
. |
T3878 |
2113-2312 |
sentence |
denotes |
These results indicate that Mcm4/6/7 protein primarily interacts with single-stranded DNA region and that the interaction also spans the duplex segments near the branchpoint of the replication fork. |
T3879 |
2114-2119 |
DT |
denotes |
These |
T3880 |
2120-2127 |
NNS |
denotes |
results |
T3881 |
2128-2136 |
VBP |
denotes |
indicate |
T3882 |
2137-2141 |
IN |
denotes |
that |
T3883 |
2169-2178 |
VBZ |
denotes |
interacts |
T3884 |
2142-2146 |
NN |
denotes |
Mcm4 |
T3885 |
2151-2158 |
NN |
denotes |
protein |
T3886 |
2146-2147 |
HYPH |
denotes |
/ |
T3887 |
2147-2148 |
CD |
denotes |
6 |
T3888 |
2148-2149 |
HYPH |
denotes |
/ |
T3889 |
2149-2150 |
CD |
denotes |
7 |
T3890 |
2159-2168 |
RB |
denotes |
primarily |
T3891 |
2179-2183 |
IN |
denotes |
with |
T3892 |
2184-2190 |
JJ |
denotes |
single |
T3893 |
2191-2199 |
VBN |
denotes |
stranded |
T3894 |
2190-2191 |
HYPH |
denotes |
- |
T3895 |
2204-2210 |
NN |
denotes |
region |
T3896 |
2200-2203 |
NN |
denotes |
DNA |
T3897 |
2211-2214 |
CC |
denotes |
and |
T3898 |
2215-2219 |
IN |
denotes |
that |
T3899 |
2241-2246 |
VBZ |
denotes |
spans |
T3900 |
2220-2223 |
DT |
denotes |
the |
T3901 |
2224-2235 |
NN |
denotes |
interaction |
T3902 |
2236-2240 |
RB |
denotes |
also |
T3903 |
2247-2250 |
DT |
denotes |
the |
T3904 |
2258-2266 |
NNS |
denotes |
segments |
T3905 |
2251-2257 |
NN |
denotes |
duplex |
T3906 |
2267-2271 |
IN |
denotes |
near |
T3907 |
2272-2275 |
DT |
denotes |
the |
T3908 |
2276-2287 |
NN |
denotes |
branchpoint |
T3909 |
2288-2290 |
IN |
denotes |
of |
T3910 |
2291-2294 |
DT |
denotes |
the |
T3911 |
2307-2311 |
NN |
denotes |
fork |
T3912 |
2295-2306 |
NN |
denotes |
replication |
T3913 |
2311-2312 |
. |
denotes |
. |
T4077 |
2314-2323 |
NN |
denotes |
Formation |
T4078 |
2363-2374 |
VBZ |
denotes |
facilitates |
T4079 |
2324-2326 |
IN |
denotes |
of |
T4080 |
2327-2333 |
JJ |
denotes |
double |
T4081 |
2334-2343 |
JJ |
denotes |
hexameric |
T4082 |
2353-2362 |
NNS |
denotes |
complexes |
T4083 |
2344-2348 |
NN |
denotes |
Mcm4 |
T4084 |
2348-2349 |
HYPH |
denotes |
/ |
T4085 |
2349-2350 |
CD |
denotes |
6 |
T4086 |
2350-2351 |
HYPH |
denotes |
/ |
T4087 |
2351-2352 |
CD |
denotes |
7 |
T4088 |
2375-2383 |
NN |
denotes |
helicase |
T4089 |
2384-2391 |
NNS |
denotes |
actions |
T4090 |
2392-2394 |
IN |
denotes |
on |
T4091 |
2395-2401 |
NN |
denotes |
bubble |
T4092 |
2402-2412 |
NNS |
denotes |
substrates |
T4093 |
2412-2602 |
sentence |
denotes |
The above results suggest that Mcm4/6/7 generates a double hexameric complex on a bubble, each hexamer of which makes symmetric contact with the 5′-proximal central single-stranded segment. |
T4094 |
2413-2416 |
DT |
denotes |
The |
T4095 |
2423-2430 |
NNS |
denotes |
results |
T4096 |
2417-2422 |
JJ |
denotes |
above |
T4097 |
2431-2438 |
VBP |
denotes |
suggest |
T4098 |
2439-2443 |
IN |
denotes |
that |
T4099 |
2453-2462 |
VBZ |
denotes |
generates |
T4100 |
2444-2448 |
NN |
denotes |
Mcm4 |
T4101 |
2448-2449 |
HYPH |
denotes |
/ |
T4102 |
2449-2450 |
CD |
denotes |
6 |
T4103 |
2450-2451 |
HYPH |
denotes |
/ |
T4104 |
2451-2452 |
CD |
denotes |
7 |
T4105 |
2463-2464 |
DT |
denotes |
a |
T4106 |
2482-2489 |
NN |
denotes |
complex |
T4107 |
2465-2471 |
JJ |
denotes |
double |
T4108 |
2472-2481 |
JJ |
denotes |
hexameric |
T4109 |
2490-2492 |
IN |
denotes |
on |
T4110 |
2493-2494 |
DT |
denotes |
a |
T4111 |
2495-2501 |
NN |
denotes |
bubble |
T4112 |
2501-2503 |
, |
denotes |
, |
T4113 |
2503-2507 |
DT |
denotes |
each |
T4114 |
2508-2515 |
NN |
denotes |
hexamer |
T4115 |
2525-2530 |
VBZ |
denotes |
makes |
T4116 |
2516-2518 |
IN |
denotes |
of |
T4117 |
2519-2524 |
WDT |
denotes |
which |
T4118 |
2531-2540 |
JJ |
denotes |
symmetric |
T4119 |
2541-2548 |
NN |
denotes |
contact |
T4120 |
2549-2553 |
IN |
denotes |
with |
T4121 |
2554-2557 |
DT |
denotes |
the |
T4122 |
2594-2601 |
NN |
denotes |
segment |
T4123 |
2558-2559 |
CD |
denotes |
5 |
T4124 |
2561-2569 |
JJ |
denotes |
proximal |
T4125 |
2559-2560 |
SYM |
denotes |
′ |
T4126 |
2560-2561 |
HYPH |
denotes |
- |
T4127 |
2570-2577 |
JJ |
denotes |
central |
T4128 |
2578-2584 |
JJ |
denotes |
single |
T4129 |
2585-2593 |
VBN |
denotes |
stranded |
T4130 |
2584-2585 |
HYPH |
denotes |
- |
T4131 |
2601-2602 |
. |
denotes |
. |
T4132 |
2602-2725 |
sentence |
denotes |
This predicts that the single-stranded segment needs to be of a sufficient length in order to accommodate the Mcm complex. |
T4133 |
2603-2607 |
DT |
denotes |
This |
T4134 |
2608-2616 |
VBZ |
denotes |
predicts |
T4135 |
2617-2621 |
IN |
denotes |
that |
T4136 |
2650-2655 |
VBZ |
denotes |
needs |
T4137 |
2622-2625 |
DT |
denotes |
the |
T4138 |
2642-2649 |
NN |
denotes |
segment |
T4139 |
2626-2632 |
JJ |
denotes |
single |
T4140 |
2633-2641 |
VBN |
denotes |
stranded |
T4141 |
2632-2633 |
HYPH |
denotes |
- |
T4142 |
2656-2658 |
TO |
denotes |
to |
T4143 |
2659-2661 |
VB |
denotes |
be |
T4144 |
2662-2664 |
IN |
denotes |
of |
T4145 |
2665-2666 |
DT |
denotes |
a |
T4146 |
2678-2684 |
NN |
denotes |
length |
T4147 |
2667-2677 |
JJ |
denotes |
sufficient |
T4148 |
2685-2687 |
IN |
denotes |
in |
T4149 |
2688-2693 |
NN |
denotes |
order |
T4150 |
2694-2696 |
TO |
denotes |
to |
T4151 |
2697-2708 |
VB |
denotes |
accommodate |
T4152 |
2709-2712 |
DT |
denotes |
the |
T4153 |
2717-2724 |
NN |
denotes |
complex |
T4154 |
2713-2716 |
NN |
denotes |
Mcm |
T4155 |
2724-2725 |
. |
denotes |
. |
T4156 |
2725-2949 |
sentence |
denotes |
In fact, we previously showed that the Mcm4/6/7 mainly forms a single hexameric complex on bubble-20 (a bubble substrate with 20 nt long central single-stranded segment) and a double hexameric complex on bubble-60 DNA (13). |
T4157 |
2726-2728 |
IN |
denotes |
In |
T4158 |
2749-2755 |
VBD |
denotes |
showed |
T4159 |
2729-2733 |
NN |
denotes |
fact |
T4160 |
2733-2735 |
, |
denotes |
, |
T4161 |
2735-2737 |
PRP |
denotes |
we |
T4162 |
2738-2748 |
RB |
denotes |
previously |
T4163 |
2756-2760 |
IN |
denotes |
that |
T4164 |
2781-2786 |
VBZ |
denotes |
forms |
T4165 |
2761-2764 |
DT |
denotes |
the |
T4166 |
2765-2769 |
NN |
denotes |
Mcm4 |
T4167 |
2769-2770 |
HYPH |
denotes |
/ |
T4168 |
2770-2771 |
CD |
denotes |
6 |
T4169 |
2771-2772 |
HYPH |
denotes |
/ |
T4170 |
2772-2773 |
CD |
denotes |
7 |
T4171 |
2774-2780 |
RB |
denotes |
mainly |
T4172 |
2787-2788 |
DT |
denotes |
a |
T4173 |
2806-2813 |
NN |
denotes |
complex |
T4174 |
2789-2795 |
JJ |
denotes |
single |
T4175 |
2796-2805 |
JJ |
denotes |
hexameric |
T4176 |
2814-2816 |
IN |
denotes |
on |
T4177 |
2817-2823 |
NN |
denotes |
bubble |
T4178 |
2823-2824 |
HYPH |
denotes |
- |
T4179 |
2824-2826 |
CD |
denotes |
20 |
T4180 |
2827-2828 |
-LRB- |
denotes |
( |
T4181 |
2828-2829 |
DT |
denotes |
a |
T4182 |
2837-2846 |
NN |
denotes |
substrate |
T4183 |
2830-2836 |
NN |
denotes |
bubble |
T4184 |
2847-2851 |
IN |
denotes |
with |
T4185 |
2852-2854 |
CD |
denotes |
20 |
T4186 |
2855-2857 |
NN |
denotes |
nt |
T4187 |
2858-2862 |
JJ |
denotes |
long |
T4188 |
2887-2894 |
NN |
denotes |
segment |
T4189 |
2863-2870 |
JJ |
denotes |
central |
T4190 |
2871-2877 |
JJ |
denotes |
single |
T4191 |
2878-2886 |
VBN |
denotes |
stranded |
T4192 |
2877-2878 |
HYPH |
denotes |
- |
T4193 |
2894-2895 |
-RRB- |
denotes |
) |
T4194 |
2896-2899 |
CC |
denotes |
and |
T4195 |
2900-2901 |
DT |
denotes |
a |
T4196 |
2919-2926 |
NN |
denotes |
complex |
T4197 |
2902-2908 |
JJ |
denotes |
double |
T4198 |
2909-2918 |
JJ |
denotes |
hexameric |
T4199 |
2927-2929 |
IN |
denotes |
on |
T4200 |
2930-2936 |
NN |
denotes |
bubble |
T4201 |
2940-2943 |
NN |
denotes |
DNA |
T4202 |
2936-2937 |
HYPH |
denotes |
- |
T4203 |
2937-2939 |
CD |
denotes |
60 |
T4204 |
2944-2945 |
-LRB- |
denotes |
( |
T4205 |
2945-2947 |
CD |
denotes |
13 |
T4206 |
2947-2948 |
-RRB- |
denotes |
) |
T4207 |
2948-2949 |
. |
denotes |
. |
T4208 |
2949-3281 |
sentence |
denotes |
In order to determine the minimum requirement for double-hexamer formation, a set of synthetic bubble-like substrates (Bub-T10, Bub-T20, Bub-T30, Bub-T40 and Bub-T50) that differed in the length of the central unpaired segment were constructed, and the binding and helicase activities of Mcm4/6/7 on these substrates were examined. |
T4209 |
2950-2952 |
IN |
denotes |
In |
T4210 |
3182-3193 |
VBN |
denotes |
constructed |
T4211 |
2953-2958 |
NN |
denotes |
order |
T4212 |
2959-2961 |
TO |
denotes |
to |
T4213 |
2962-2971 |
VB |
denotes |
determine |
T4214 |
2972-2975 |
DT |
denotes |
the |
T4215 |
2984-2995 |
NN |
denotes |
requirement |
T4216 |
2976-2983 |
JJ |
denotes |
minimum |
T4217 |
2996-2999 |
IN |
denotes |
for |
T4218 |
3000-3006 |
JJ |
denotes |
double |
T4219 |
3007-3014 |
NN |
denotes |
hexamer |
T4220 |
3006-3007 |
HYPH |
denotes |
- |
T4221 |
3015-3024 |
NN |
denotes |
formation |
T4222 |
3024-3026 |
, |
denotes |
, |
T4223 |
3026-3027 |
DT |
denotes |
a |
T4224 |
3028-3031 |
NN |
denotes |
set |
T4225 |
3032-3034 |
IN |
denotes |
of |
T4226 |
3035-3044 |
JJ |
denotes |
synthetic |
T4227 |
3057-3067 |
NNS |
denotes |
substrates |
T4228 |
3045-3051 |
NN |
denotes |
bubble |
T4229 |
3052-3056 |
JJ |
denotes |
like |
T4230 |
3051-3052 |
HYPH |
denotes |
- |
T4231 |
3068-3069 |
-LRB- |
denotes |
( |
T4232 |
3069-3072 |
NN |
denotes |
Bub |
T4233 |
3073-3076 |
NN |
denotes |
T10 |
T4234 |
3072-3073 |
HYPH |
denotes |
- |
T4235 |
3076-3078 |
, |
denotes |
, |
T4236 |
3078-3081 |
NN |
denotes |
Bub |
T4237 |
3082-3085 |
NN |
denotes |
T20 |
T4238 |
3081-3082 |
HYPH |
denotes |
- |
T4239 |
3085-3087 |
, |
denotes |
, |
T4240 |
3087-3090 |
NN |
denotes |
Bub |
T4241 |
3091-3094 |
NN |
denotes |
T30 |
T4242 |
3090-3091 |
HYPH |
denotes |
- |
T4243 |
3094-3096 |
, |
denotes |
, |
T4244 |
3096-3099 |
NN |
denotes |
Bub |
T4245 |
3100-3103 |
NN |
denotes |
T40 |
T4246 |
3099-3100 |
HYPH |
denotes |
- |
T4247 |
3104-3107 |
CC |
denotes |
and |
T4248 |
3108-3111 |
NN |
denotes |
Bub |
T4249 |
3112-3115 |
NN |
denotes |
T50 |
T4250 |
3111-3112 |
HYPH |
denotes |
- |
T4251 |
3115-3116 |
-RRB- |
denotes |
) |
T4252 |
3117-3121 |
WDT |
denotes |
that |
T4253 |
3122-3130 |
VBD |
denotes |
differed |
T4254 |
3131-3133 |
IN |
denotes |
in |
T4255 |
3134-3137 |
DT |
denotes |
the |
T4256 |
3138-3144 |
NN |
denotes |
length |
T4257 |
3145-3147 |
IN |
denotes |
of |
T4258 |
3148-3151 |
DT |
denotes |
the |
T4259 |
3169-3176 |
NN |
denotes |
segment |
T4260 |
3152-3159 |
JJ |
denotes |
central |
T4261 |
3160-3168 |
JJ |
denotes |
unpaired |
T4262 |
3177-3181 |
VBD |
denotes |
were |
T4263 |
3193-3195 |
, |
denotes |
, |
T4264 |
3195-3198 |
CC |
denotes |
and |
T4265 |
3199-3202 |
DT |
denotes |
the |
T4266 |
3224-3234 |
NNS |
denotes |
activities |
T4267 |
3203-3210 |
NN |
denotes |
binding |
T4268 |
3211-3214 |
CC |
denotes |
and |
T4269 |
3215-3223 |
NN |
denotes |
helicase |
T4270 |
3272-3280 |
VBN |
denotes |
examined |
T4271 |
3235-3237 |
IN |
denotes |
of |
T4272 |
3238-3242 |
NN |
denotes |
Mcm4 |
T4273 |
3242-3243 |
HYPH |
denotes |
/ |
T4274 |
3243-3244 |
CD |
denotes |
6 |
T4275 |
3244-3245 |
HYPH |
denotes |
/ |
T4276 |
3245-3246 |
CD |
denotes |
7 |
T4277 |
3247-3249 |
IN |
denotes |
on |
T4278 |
3250-3255 |
DT |
denotes |
these |
T4279 |
3256-3266 |
NNS |
denotes |
substrates |
T4280 |
3267-3271 |
VBD |
denotes |
were |
T4281 |
3280-3281 |
. |
denotes |
. |
T4282 |
3281-3413 |
sentence |
denotes |
Mcm4/6/7 was incubated with a radiolabeled synthetic bubble substrate in the presence of 0.5 mM ATP-γ-S to allow complex formation. |
T4283 |
3282-3286 |
NN |
denotes |
Mcm4 |
T4284 |
3295-3304 |
VBN |
denotes |
incubated |
T4285 |
3286-3287 |
HYPH |
denotes |
/ |
T4286 |
3287-3288 |
CD |
denotes |
6 |
T4287 |
3288-3289 |
HYPH |
denotes |
/ |
T4288 |
3289-3290 |
CD |
denotes |
7 |
T4289 |
3291-3294 |
VBD |
denotes |
was |
T4290 |
3305-3309 |
IN |
denotes |
with |
T4291 |
3310-3311 |
DT |
denotes |
a |
T4292 |
3342-3351 |
NN |
denotes |
substrate |
T4293 |
3312-3324 |
VBN |
denotes |
radiolabeled |
T4294 |
3325-3334 |
JJ |
denotes |
synthetic |
T4295 |
3335-3341 |
NN |
denotes |
bubble |
T4296 |
3352-3354 |
IN |
denotes |
in |
T4297 |
3355-3358 |
DT |
denotes |
the |
T4298 |
3359-3367 |
NN |
denotes |
presence |
T4299 |
3368-3370 |
IN |
denotes |
of |
T4300 |
3371-3374 |
CD |
denotes |
0.5 |
T4301 |
3375-3377 |
NN |
denotes |
mM |
T4302 |
3384-3385 |
NN |
denotes |
S |
T4303 |
3378-3381 |
NN |
denotes |
ATP |
T4304 |
3381-3382 |
HYPH |
denotes |
- |
T4305 |
3382-3383 |
SYM |
denotes |
γ |
T4306 |
3383-3384 |
HYPH |
denotes |
- |
T4307 |
3386-3388 |
TO |
denotes |
to |
T4308 |
3389-3394 |
VB |
denotes |
allow |
T4309 |
3395-3402 |
NN |
denotes |
complex |
T4310 |
3403-3412 |
NN |
denotes |
formation |
T4311 |
3412-3413 |
. |
denotes |
. |
T4312 |
3413-3625 |
sentence |
denotes |
A half of these reaction mixtures were analyzed for DNA binding in gel shift assays (Figure 2A), and the remainder was further incubated in the presence of 10 mM ATP to measure DNA helicase activity (Figure 2B). |
T4313 |
3414-3415 |
DT |
denotes |
A |
T4314 |
3416-3420 |
NN |
denotes |
half |
T4315 |
3453-3461 |
VBN |
denotes |
analyzed |
T4316 |
3421-3423 |
IN |
denotes |
of |
T4317 |
3424-3429 |
DT |
denotes |
these |
T4318 |
3439-3447 |
NNS |
denotes |
mixtures |
T4319 |
3430-3438 |
NN |
denotes |
reaction |
T4320 |
3448-3452 |
VBD |
denotes |
were |
T4321 |
3462-3465 |
IN |
denotes |
for |
T4322 |
3466-3469 |
NN |
denotes |
DNA |
T4323 |
3470-3477 |
NN |
denotes |
binding |
T4324 |
3478-3480 |
IN |
denotes |
in |
T4325 |
3481-3484 |
NN |
denotes |
gel |
T4326 |
3485-3490 |
NN |
denotes |
shift |
T4327 |
3491-3497 |
NNS |
denotes |
assays |
T4328 |
3498-3499 |
-LRB- |
denotes |
( |
T4329 |
3506-3508 |
NN |
denotes |
2A |
T4330 |
3499-3505 |
NN |
denotes |
Figure |
T4331 |
3508-3509 |
-RRB- |
denotes |
) |
T4332 |
3509-3511 |
, |
denotes |
, |
T4333 |
3511-3514 |
CC |
denotes |
and |
T4334 |
3515-3518 |
DT |
denotes |
the |
T4335 |
3519-3528 |
NN |
denotes |
remainder |
T4336 |
3541-3550 |
VBN |
denotes |
incubated |
T4337 |
3529-3532 |
VBD |
denotes |
was |
T4338 |
3533-3540 |
RB |
denotes |
further |
T4339 |
3551-3553 |
IN |
denotes |
in |
T4340 |
3554-3557 |
DT |
denotes |
the |
T4341 |
3558-3566 |
NN |
denotes |
presence |
T4342 |
3567-3569 |
IN |
denotes |
of |
T4343 |
3570-3572 |
CD |
denotes |
10 |
T4344 |
3573-3575 |
NN |
denotes |
mM |
T4345 |
3576-3579 |
NN |
denotes |
ATP |
T4346 |
3580-3582 |
TO |
denotes |
to |
T4347 |
3583-3590 |
VB |
denotes |
measure |
T4348 |
3591-3594 |
NN |
denotes |
DNA |
T4349 |
3595-3603 |
NN |
denotes |
helicase |
T4350 |
3604-3612 |
NN |
denotes |
activity |
T4351 |
3613-3614 |
-LRB- |
denotes |
( |
T4352 |
3621-3623 |
NN |
denotes |
2B |
T4353 |
3614-3620 |
NN |
denotes |
Figure |
T4354 |
3623-3624 |
-RRB- |
denotes |
) |
T4355 |
3624-3625 |
. |
denotes |
. |
T4356 |
3625-3798 |
sentence |
denotes |
Bub-10 generated only a low level of complexes with Mcm4/6/7, and Bub-20 generated primarily a single mobility-shifted form, which may contain a single hexamer of Mcm4/6/7. |
T4357 |
3626-3629 |
NN |
denotes |
Bub |
T4358 |
3633-3642 |
VBD |
denotes |
generated |
T4359 |
3629-3630 |
HYPH |
denotes |
- |
T4360 |
3630-3632 |
CD |
denotes |
10 |
T4361 |
3643-3647 |
RB |
denotes |
only |
T4362 |
3654-3659 |
NN |
denotes |
level |
T4363 |
3648-3649 |
DT |
denotes |
a |
T4364 |
3650-3653 |
JJ |
denotes |
low |
T4365 |
3660-3662 |
IN |
denotes |
of |
T4366 |
3663-3672 |
NNS |
denotes |
complexes |
T4367 |
3673-3677 |
IN |
denotes |
with |
T4368 |
3678-3682 |
NN |
denotes |
Mcm4 |
T4369 |
3682-3683 |
HYPH |
denotes |
/ |
T4370 |
3683-3684 |
CD |
denotes |
6 |
T4371 |
3684-3685 |
HYPH |
denotes |
/ |
T4372 |
3685-3686 |
CD |
denotes |
7 |
T4373 |
3686-3688 |
, |
denotes |
, |
T4374 |
3688-3691 |
CC |
denotes |
and |
T4375 |
3692-3695 |
NN |
denotes |
Bub |
T4376 |
3699-3708 |
VBD |
denotes |
generated |
T4377 |
3695-3696 |
HYPH |
denotes |
- |
T4378 |
3696-3698 |
CD |
denotes |
20 |
T4379 |
3709-3718 |
RB |
denotes |
primarily |
T4380 |
3719-3720 |
DT |
denotes |
a |
T4381 |
3745-3749 |
NN |
denotes |
form |
T4382 |
3721-3727 |
JJ |
denotes |
single |
T4383 |
3728-3736 |
NN |
denotes |
mobility |
T4384 |
3737-3744 |
VBN |
denotes |
shifted |
T4385 |
3736-3737 |
HYPH |
denotes |
- |
T4386 |
3749-3751 |
, |
denotes |
, |
T4387 |
3751-3756 |
WDT |
denotes |
which |
T4388 |
3761-3768 |
VB |
denotes |
contain |
T4389 |
3757-3760 |
MD |
denotes |
may |
T4390 |
3769-3770 |
DT |
denotes |
a |
T4391 |
3778-3785 |
NN |
denotes |
hexamer |
T4392 |
3771-3777 |
JJ |
denotes |
single |
T4393 |
3786-3788 |
IN |
denotes |
of |
T4394 |
3789-3793 |
NN |
denotes |
Mcm4 |
T4395 |
3793-3794 |
HYPH |
denotes |
/ |
T4396 |
3794-3795 |
CD |
denotes |
6 |
T4397 |
3795-3796 |
HYPH |
denotes |
/ |
T4398 |
3796-3797 |
CD |
denotes |
7 |
T4399 |
3797-3798 |
. |
denotes |
. |
T4400 |
3798-3954 |
sentence |
denotes |
On Bub-30, significant amount of complexes containing a double hexamer were generated in addition to those containing a single hexamer (Figure 2A) (13,21). |
T4401 |
3799-3801 |
IN |
denotes |
On |
T4402 |
3875-3884 |
VBN |
denotes |
generated |
T4403 |
3802-3805 |
NN |
denotes |
Bub |
T4404 |
3805-3806 |
HYPH |
denotes |
- |
T4405 |
3806-3808 |
CD |
denotes |
30 |
T4406 |
3808-3810 |
, |
denotes |
, |
T4407 |
3810-3821 |
JJ |
denotes |
significant |
T4408 |
3822-3828 |
NN |
denotes |
amount |
T4409 |
3829-3831 |
IN |
denotes |
of |
T4410 |
3832-3841 |
NNS |
denotes |
complexes |
T4411 |
3842-3852 |
VBG |
denotes |
containing |
T4412 |
3853-3854 |
DT |
denotes |
a |
T4413 |
3862-3869 |
NN |
denotes |
hexamer |
T4414 |
3855-3861 |
JJ |
denotes |
double |
T4415 |
3870-3874 |
VBD |
denotes |
were |
T4416 |
3885-3887 |
IN |
denotes |
in |
T4417 |
3888-3896 |
NN |
denotes |
addition |
T4418 |
3897-3899 |
IN |
denotes |
to |
T4419 |
3900-3905 |
DT |
denotes |
those |
T4420 |
3906-3916 |
VBG |
denotes |
containing |
T4421 |
3917-3918 |
DT |
denotes |
a |
T4422 |
3926-3933 |
NN |
denotes |
hexamer |
T4423 |
3919-3925 |
JJ |
denotes |
single |
T4424 |
3934-3935 |
-LRB- |
denotes |
( |
T4425 |
3942-3944 |
NN |
denotes |
2A |
T4426 |
3935-3941 |
NN |
denotes |
Figure |
T4427 |
3944-3945 |
-RRB- |
denotes |
) |
T4428 |
3946-3947 |
-LRB- |
denotes |
( |
T4429 |
3950-3952 |
CD |
denotes |
21 |
T4430 |
3947-3949 |
CD |
denotes |
13 |
T4431 |
3949-3950 |
, |
denotes |
, |
T4432 |
3952-3953 |
-RRB- |
denotes |
) |
T4433 |
3953-3954 |
. |
denotes |
. |
T4434 |
3954-4094 |
sentence |
denotes |
The amounts of double hexamer complexes increased on Bub-T40 and Bub-T50 with concomitant decrease of single hexamer complexes (Figure 2A). |
T4435 |
3955-3958 |
DT |
denotes |
The |
T4436 |
3959-3966 |
NNS |
denotes |
amounts |
T4437 |
3995-4004 |
VBD |
denotes |
increased |
T4438 |
3967-3969 |
IN |
denotes |
of |
T4439 |
3970-3976 |
JJ |
denotes |
double |
T4440 |
3977-3984 |
NN |
denotes |
hexamer |
T4441 |
3985-3994 |
NNS |
denotes |
complexes |
T4442 |
4005-4007 |
IN |
denotes |
on |
T4443 |
4008-4011 |
NN |
denotes |
Bub |
T4444 |
4012-4015 |
NN |
denotes |
T40 |
T4445 |
4011-4012 |
HYPH |
denotes |
- |
T4446 |
4016-4019 |
CC |
denotes |
and |
T4447 |
4020-4023 |
NN |
denotes |
Bub |
T4448 |
4024-4027 |
NN |
denotes |
T50 |
T4449 |
4023-4024 |
HYPH |
denotes |
- |
T4450 |
4028-4032 |
IN |
denotes |
with |
T4451 |
4033-4044 |
JJ |
denotes |
concomitant |
T4452 |
4045-4053 |
NN |
denotes |
decrease |
T4453 |
4054-4056 |
IN |
denotes |
of |
T4454 |
4057-4063 |
JJ |
denotes |
single |
T4455 |
4064-4071 |
NN |
denotes |
hexamer |
T4456 |
4072-4081 |
NNS |
denotes |
complexes |
T4457 |
4082-4083 |
-LRB- |
denotes |
( |
T4458 |
4090-4092 |
NN |
denotes |
2A |
T4459 |
4083-4089 |
NN |
denotes |
Figure |
T4460 |
4092-4093 |
-RRB- |
denotes |
) |
T4461 |
4093-4094 |
. |
denotes |
. |
T4462 |
4094-4263 |
sentence |
denotes |
The results indicate that a single-stranded segment of at least 40 nt long is required for efficient loading of the double-hexameric Mcm helicase on a bubble substrate. |
T4463 |
4095-4098 |
DT |
denotes |
The |
T4464 |
4099-4106 |
NNS |
denotes |
results |
T4465 |
4107-4115 |
VBP |
denotes |
indicate |
T4466 |
4116-4120 |
IN |
denotes |
that |
T4467 |
4173-4181 |
VBN |
denotes |
required |
T4468 |
4121-4122 |
DT |
denotes |
a |
T4469 |
4139-4146 |
NN |
denotes |
segment |
T4470 |
4123-4129 |
JJ |
denotes |
single |
T4471 |
4130-4138 |
VBN |
denotes |
stranded |
T4472 |
4129-4130 |
HYPH |
denotes |
- |
T4473 |
4147-4149 |
IN |
denotes |
of |
T4474 |
4150-4152 |
RB |
denotes |
at |
T4475 |
4153-4158 |
RBS |
denotes |
least |
T4476 |
4159-4161 |
CD |
denotes |
40 |
T4477 |
4162-4164 |
NN |
denotes |
nt |
T4478 |
4165-4169 |
JJ |
denotes |
long |
T4479 |
4170-4172 |
VBZ |
denotes |
is |
T4480 |
4182-4185 |
IN |
denotes |
for |
T4481 |
4186-4195 |
JJ |
denotes |
efficient |
T4482 |
4196-4203 |
NN |
denotes |
loading |
T4483 |
4204-4206 |
IN |
denotes |
of |
T4484 |
4207-4210 |
DT |
denotes |
the |
T4485 |
4232-4240 |
NN |
denotes |
helicase |
T4486 |
4211-4217 |
JJ |
denotes |
double |
T4487 |
4218-4227 |
JJ |
denotes |
hexameric |
T4488 |
4217-4218 |
HYPH |
denotes |
- |
T4489 |
4228-4231 |
NN |
denotes |
Mcm |
T4490 |
4241-4243 |
IN |
denotes |
on |
T4491 |
4244-4245 |
DT |
denotes |
a |
T4492 |
4253-4262 |
NN |
denotes |
substrate |
T4493 |
4246-4252 |
NN |
denotes |
bubble |
T4494 |
4262-4263 |
. |
denotes |
. |
T4495 |
4263-4373 |
sentence |
denotes |
In DNA helicase assays, Mcm4/6/7 complex did not show helicase activity on either Bub-10 or Bub-20 substrate. |
T4496 |
4264-4266 |
IN |
denotes |
In |
T4497 |
4313-4317 |
VB |
denotes |
show |
T4498 |
4267-4270 |
NN |
denotes |
DNA |
T4499 |
4271-4279 |
NN |
denotes |
helicase |
T4500 |
4280-4286 |
NNS |
denotes |
assays |
T4501 |
4286-4288 |
, |
denotes |
, |
T4502 |
4288-4292 |
NN |
denotes |
Mcm4 |
T4503 |
4297-4304 |
NN |
denotes |
complex |
T4504 |
4292-4293 |
HYPH |
denotes |
/ |
T4505 |
4293-4294 |
CD |
denotes |
6 |
T4506 |
4294-4295 |
HYPH |
denotes |
/ |
T4507 |
4295-4296 |
CD |
denotes |
7 |
T4508 |
4305-4308 |
VBD |
denotes |
did |
T4509 |
4309-4312 |
RB |
denotes |
not |
T4510 |
4318-4326 |
NN |
denotes |
helicase |
T4511 |
4327-4335 |
NN |
denotes |
activity |
T4512 |
4336-4338 |
IN |
denotes |
on |
T4513 |
4339-4345 |
CC |
denotes |
either |
T4514 |
4346-4349 |
NN |
denotes |
Bub |
T4515 |
4363-4372 |
NN |
denotes |
substrate |
T4516 |
4349-4350 |
HYPH |
denotes |
- |
T4517 |
4350-4352 |
CD |
denotes |
10 |
T4518 |
4353-4355 |
CC |
denotes |
or |
T4519 |
4356-4359 |
NN |
denotes |
Bub |
T4520 |
4359-4360 |
HYPH |
denotes |
- |
T4521 |
4360-4362 |
CD |
denotes |
20 |
T4522 |
4372-4373 |
. |
denotes |
. |
T4523 |
4373-4490 |
sentence |
denotes |
The efficiency of displacement slightly improved as the length of the single-stranded segment increased up to 30 nt. |
T4524 |
4374-4377 |
DT |
denotes |
The |
T4525 |
4378-4388 |
NN |
denotes |
efficiency |
T4526 |
4414-4422 |
VBD |
denotes |
improved |
T4527 |
4389-4391 |
IN |
denotes |
of |
T4528 |
4392-4404 |
NN |
denotes |
displacement |
T4529 |
4405-4413 |
RB |
denotes |
slightly |
T4530 |
4423-4425 |
IN |
denotes |
as |
T4531 |
4468-4477 |
VBD |
denotes |
increased |
T4532 |
4426-4429 |
DT |
denotes |
the |
T4533 |
4430-4436 |
NN |
denotes |
length |
T4534 |
4437-4439 |
IN |
denotes |
of |
T4535 |
4440-4443 |
DT |
denotes |
the |
T4536 |
4460-4467 |
NN |
denotes |
segment |
T4537 |
4444-4450 |
JJ |
denotes |
single |
T4538 |
4451-4459 |
VBN |
denotes |
stranded |
T4539 |
4450-4451 |
HYPH |
denotes |
- |
T4540 |
4478-4480 |
IN |
denotes |
up |
T4541 |
4484-4486 |
CD |
denotes |
30 |
T4542 |
4481-4483 |
IN |
denotes |
to |
T4543 |
4487-4489 |
NN |
denotes |
nt |
T4544 |
4489-4490 |
. |
denotes |
. |
T4545 |
4490-4714 |
sentence |
denotes |
On Bub-T40 and Bub-T50, on the other hand, significant displacement was observed, indicating that a single-stranded segment of at least 40 nt long is required for efficient helicase actions on bubble substrates (Figure 2B). |
T4546 |
4491-4493 |
IN |
denotes |
On |
T4547 |
4563-4571 |
VBN |
denotes |
observed |
T4548 |
4494-4497 |
NN |
denotes |
Bub |
T4549 |
4498-4501 |
NN |
denotes |
T40 |
T4550 |
4497-4498 |
HYPH |
denotes |
- |
T4551 |
4502-4505 |
CC |
denotes |
and |
T4552 |
4506-4509 |
NN |
denotes |
Bub |
T4553 |
4510-4513 |
NN |
denotes |
T50 |
T4554 |
4509-4510 |
HYPH |
denotes |
- |
T4555 |
4513-4515 |
, |
denotes |
, |
T4556 |
4515-4517 |
IN |
denotes |
on |
T4557 |
4518-4521 |
DT |
denotes |
the |
T4558 |
4528-4532 |
NN |
denotes |
hand |
T4559 |
4522-4527 |
JJ |
denotes |
other |
T4560 |
4532-4534 |
, |
denotes |
, |
T4561 |
4534-4545 |
JJ |
denotes |
significant |
T4562 |
4546-4558 |
NN |
denotes |
displacement |
T4563 |
4559-4562 |
VBD |
denotes |
was |
T4564 |
4571-4573 |
, |
denotes |
, |
T4565 |
4573-4583 |
VBG |
denotes |
indicating |
T4566 |
4584-4588 |
IN |
denotes |
that |
T4567 |
4641-4649 |
VBN |
denotes |
required |
T4568 |
4589-4590 |
DT |
denotes |
a |
T4569 |
4607-4614 |
NN |
denotes |
segment |
T4570 |
4591-4597 |
JJ |
denotes |
single |
T4571 |
4598-4606 |
VBN |
denotes |
stranded |
T4572 |
4597-4598 |
HYPH |
denotes |
- |
T4573 |
4615-4617 |
IN |
denotes |
of |
T4574 |
4618-4620 |
RB |
denotes |
at |
T4575 |
4621-4626 |
RBS |
denotes |
least |
T4576 |
4627-4629 |
CD |
denotes |
40 |
T4577 |
4630-4632 |
NN |
denotes |
nt |
T4578 |
4633-4637 |
JJ |
denotes |
long |
T4579 |
4638-4640 |
VBZ |
denotes |
is |
T4580 |
4650-4653 |
IN |
denotes |
for |
T4581 |
4654-4663 |
JJ |
denotes |
efficient |
T4582 |
4673-4680 |
NNS |
denotes |
actions |
T4583 |
4664-4672 |
NN |
denotes |
helicase |
T4584 |
4681-4683 |
IN |
denotes |
on |
T4585 |
4684-4690 |
NN |
denotes |
bubble |
T4586 |
4691-4701 |
NNS |
denotes |
substrates |
T4587 |
4702-4703 |
-LRB- |
denotes |
( |
T4588 |
4710-4712 |
NN |
denotes |
2B |
T4589 |
4703-4709 |
NN |
denotes |
Figure |
T4590 |
4712-4713 |
-RRB- |
denotes |
) |
T4591 |
4713-4714 |
. |
denotes |
. |
T4592 |
4714-4913 |
sentence |
denotes |
Taken together, the above results are consistent with the notion that the Mcm4/6/7 complex, loaded onto DNA as a double hexameric complex, efficiently unwinds the duplex region of the substrate DNA. |
T4593 |
4715-4720 |
VBN |
denotes |
Taken |
T4594 |
4749-4752 |
VBP |
denotes |
are |
T4595 |
4721-4729 |
RB |
denotes |
together |
T4596 |
4729-4731 |
, |
denotes |
, |
T4597 |
4731-4734 |
DT |
denotes |
the |
T4598 |
4741-4748 |
NNS |
denotes |
results |
T4599 |
4735-4740 |
JJ |
denotes |
above |
T4600 |
4753-4763 |
JJ |
denotes |
consistent |
T4601 |
4764-4768 |
IN |
denotes |
with |
T4602 |
4769-4772 |
DT |
denotes |
the |
T4603 |
4773-4779 |
NN |
denotes |
notion |
T4604 |
4780-4784 |
IN |
denotes |
that |
T4605 |
4866-4873 |
VBZ |
denotes |
unwinds |
T4606 |
4785-4788 |
DT |
denotes |
the |
T4607 |
4798-4805 |
NN |
denotes |
complex |
T4608 |
4789-4793 |
NN |
denotes |
Mcm4 |
T4609 |
4793-4794 |
HYPH |
denotes |
/ |
T4610 |
4794-4795 |
CD |
denotes |
6 |
T4611 |
4795-4796 |
HYPH |
denotes |
/ |
T4612 |
4796-4797 |
CD |
denotes |
7 |
T4613 |
4805-4807 |
, |
denotes |
, |
T4614 |
4807-4813 |
VBN |
denotes |
loaded |
T4615 |
4814-4818 |
IN |
denotes |
onto |
T4616 |
4819-4822 |
NN |
denotes |
DNA |
T4617 |
4823-4825 |
IN |
denotes |
as |
T4618 |
4826-4827 |
DT |
denotes |
a |
T4619 |
4845-4852 |
NN |
denotes |
complex |
T4620 |
4828-4834 |
JJ |
denotes |
double |
T4621 |
4835-4844 |
JJ |
denotes |
hexameric |
T4622 |
4852-4854 |
, |
denotes |
, |
T4623 |
4854-4865 |
RB |
denotes |
efficiently |
T4624 |
4874-4877 |
DT |
denotes |
the |
T4625 |
4885-4891 |
NN |
denotes |
region |
T4626 |
4878-4884 |
NN |
denotes |
duplex |
T4627 |
4892-4894 |
IN |
denotes |
of |
T4628 |
4895-4898 |
DT |
denotes |
the |
T4629 |
4909-4912 |
NN |
denotes |
DNA |
T4630 |
4899-4908 |
NN |
denotes |
substrate |
T4631 |
4912-4913 |
. |
denotes |
. |
T4737 |
4915-4919 |
DT |
denotes |
Both |
T4738 |
4920-4927 |
NNS |
denotes |
strands |
T4739 |
4973-4981 |
VBN |
denotes |
required |
T4740 |
4928-4930 |
IN |
denotes |
of |
T4741 |
4931-4938 |
NN |
denotes |
thymine |
T4742 |
4939-4943 |
JJ |
denotes |
rich |
T4743 |
4938-4939 |
HYPH |
denotes |
- |
T4744 |
4960-4968 |
NNS |
denotes |
segments |
T4745 |
4944-4950 |
JJ |
denotes |
single |
T4746 |
4951-4959 |
VBN |
denotes |
stranded |
T4747 |
4950-4951 |
HYPH |
denotes |
- |
T4748 |
4969-4972 |
VBP |
denotes |
are |
T4749 |
4982-4985 |
IN |
denotes |
for |
T4750 |
4986-4995 |
JJ |
denotes |
efficient |
T4751 |
4996-5005 |
NN |
denotes |
unwinding |
T4752 |
5006-5008 |
IN |
denotes |
of |
T4753 |
5009-5015 |
NN |
denotes |
bubble |
T4754 |
5016-5019 |
NN |
denotes |
DNA |
T4755 |
5020-5022 |
IN |
denotes |
by |
T4756 |
5023-5027 |
NN |
denotes |
Mcm4 |
T4757 |
5027-5028 |
HYPH |
denotes |
/ |
T4758 |
5028-5029 |
CD |
denotes |
6 |
T4759 |
5029-5030 |
HYPH |
denotes |
/ |
T4760 |
5030-5031 |
CD |
denotes |
7 |
T4761 |
5031-5172 |
sentence |
denotes |
Symmetric binding of the Mcm4/6/7 double hexamer to bubble suggests that each hexamer catalyzes unwinding of one of the two duplex segments. |
T4762 |
5032-5041 |
JJ |
denotes |
Symmetric |
T4763 |
5042-5049 |
NN |
denotes |
binding |
T4764 |
5091-5099 |
VBZ |
denotes |
suggests |
T4765 |
5050-5052 |
IN |
denotes |
of |
T4766 |
5053-5056 |
DT |
denotes |
the |
T4767 |
5073-5080 |
NN |
denotes |
hexamer |
T4768 |
5057-5061 |
NN |
denotes |
Mcm4 |
T4769 |
5061-5062 |
HYPH |
denotes |
/ |
T4770 |
5062-5063 |
CD |
denotes |
6 |
T4771 |
5063-5064 |
HYPH |
denotes |
/ |
T4772 |
5064-5065 |
CD |
denotes |
7 |
T4773 |
5066-5072 |
JJ |
denotes |
double |
T4774 |
5081-5083 |
IN |
denotes |
to |
T4775 |
5084-5090 |
NN |
denotes |
bubble |
T4776 |
5100-5104 |
IN |
denotes |
that |
T4777 |
5118-5127 |
VBZ |
denotes |
catalyzes |
T4778 |
5105-5109 |
DT |
denotes |
each |
T4779 |
5110-5117 |
NN |
denotes |
hexamer |
T4780 |
5128-5137 |
NN |
denotes |
unwinding |
T4781 |
5138-5140 |
IN |
denotes |
of |
T4782 |
5141-5144 |
CD |
denotes |
one |
T4783 |
5145-5147 |
IN |
denotes |
of |
T4784 |
5148-5151 |
DT |
denotes |
the |
T4785 |
5163-5171 |
NNS |
denotes |
segments |
T4786 |
5152-5155 |
CD |
denotes |
two |
T4787 |
5156-5162 |
NN |
denotes |
duplex |
T4788 |
5171-5172 |
. |
denotes |
. |
T4789 |
5172-5268 |
sentence |
denotes |
We asked whether activation of both hexamers is required for unwinding of the bubble substrate. |
T4790 |
5173-5175 |
PRP |
denotes |
We |
T4791 |
5176-5181 |
VBD |
denotes |
asked |
T4792 |
5182-5189 |
IN |
denotes |
whether |
T4793 |
5221-5229 |
VBN |
denotes |
required |
T4794 |
5190-5200 |
NN |
denotes |
activation |
T4795 |
5201-5203 |
IN |
denotes |
of |
T4796 |
5204-5208 |
DT |
denotes |
both |
T4797 |
5209-5217 |
NNS |
denotes |
hexamers |
T4798 |
5218-5220 |
VBZ |
denotes |
is |
T4799 |
5230-5233 |
IN |
denotes |
for |
T4800 |
5234-5243 |
NN |
denotes |
unwinding |
T4801 |
5244-5246 |
IN |
denotes |
of |
T4802 |
5247-5250 |
DT |
denotes |
the |
T4803 |
5258-5267 |
NN |
denotes |
substrate |
T4804 |
5251-5257 |
NN |
denotes |
bubble |
T4805 |
5267-5268 |
. |
denotes |
. |
T4806 |
5268-5415 |
sentence |
denotes |
The preferred bubble substrate which is efficiently unwound by Mcm4/6/7 contains thymine stretches on both strands of the single-stranded segment. |
T4807 |
5269-5272 |
DT |
denotes |
The |
T4808 |
5290-5299 |
NN |
denotes |
substrate |
T4809 |
5273-5282 |
JJ |
denotes |
preferred |
T4810 |
5283-5289 |
NN |
denotes |
bubble |
T4811 |
5341-5349 |
VBZ |
denotes |
contains |
T4812 |
5300-5305 |
WDT |
denotes |
which |
T4813 |
5321-5328 |
VBN |
denotes |
unwound |
T4814 |
5306-5308 |
VBZ |
denotes |
is |
T4815 |
5309-5320 |
RB |
denotes |
efficiently |
T4816 |
5329-5331 |
IN |
denotes |
by |
T4817 |
5332-5336 |
NN |
denotes |
Mcm4 |
T4818 |
5336-5337 |
HYPH |
denotes |
/ |
T4819 |
5337-5338 |
CD |
denotes |
6 |
T4820 |
5338-5339 |
HYPH |
denotes |
/ |
T4821 |
5339-5340 |
CD |
denotes |
7 |
T4822 |
5350-5357 |
NN |
denotes |
thymine |
T4823 |
5358-5367 |
NNS |
denotes |
stretches |
T4824 |
5368-5370 |
IN |
denotes |
on |
T4825 |
5371-5375 |
DT |
denotes |
both |
T4826 |
5376-5383 |
NNS |
denotes |
strands |
T4827 |
5384-5386 |
IN |
denotes |
of |
T4828 |
5387-5390 |
DT |
denotes |
the |
T4829 |
5407-5414 |
NN |
denotes |
segment |
T4830 |
5391-5397 |
JJ |
denotes |
single |
T4831 |
5398-5406 |
VBN |
denotes |
stranded |
T4832 |
5397-5398 |
HYPH |
denotes |
- |
T4833 |
5414-5415 |
. |
denotes |
. |
T4834 |
5415-5647 |
sentence |
denotes |
We constructed a hetero-bubble (Bub66/T–G-rich) in which one strand is T-rich (same as Bub66/T-rich) and the other strand is G-rich (same as Bub66/G-rich) (13), and helicase assays were conducted with increasing amount of Mcm4/6/7. |
T4835 |
5416-5418 |
PRP |
denotes |
We |
T4836 |
5419-5430 |
VBD |
denotes |
constructed |
T4837 |
5431-5432 |
DT |
denotes |
a |
T4838 |
5433-5446 |
JJ |
denotes |
hetero-bubble |
T4839 |
5447-5448 |
-LRB- |
denotes |
( |
T4840 |
5448-5453 |
NN |
denotes |
Bub66 |
T4841 |
5456-5457 |
NN |
denotes |
G |
T4842 |
5453-5454 |
HYPH |
denotes |
/ |
T4843 |
5454-5455 |
NN |
denotes |
T |
T4844 |
5455-5456 |
HYPH |
denotes |
– |
T4845 |
5457-5458 |
HYPH |
denotes |
- |
T4846 |
5458-5462 |
JJ |
denotes |
rich |
T4847 |
5462-5463 |
-RRB- |
denotes |
) |
T4848 |
5464-5466 |
IN |
denotes |
in |
T4849 |
5484-5486 |
VBZ |
denotes |
is |
T4850 |
5467-5472 |
WDT |
denotes |
which |
T4851 |
5473-5476 |
CD |
denotes |
one |
T4852 |
5477-5483 |
NN |
denotes |
strand |
T4853 |
5487-5488 |
NN |
denotes |
T |
T4854 |
5489-5493 |
JJ |
denotes |
rich |
T4855 |
5488-5489 |
HYPH |
denotes |
- |
T4856 |
5494-5495 |
-LRB- |
denotes |
( |
T4857 |
5495-5499 |
JJ |
denotes |
same |
T4858 |
5500-5502 |
IN |
denotes |
as |
T4859 |
5503-5508 |
NN |
denotes |
Bub66 |
T4860 |
5509-5510 |
NN |
denotes |
T |
T4861 |
5508-5509 |
HYPH |
denotes |
/ |
T4862 |
5510-5511 |
HYPH |
denotes |
- |
T4863 |
5511-5515 |
JJ |
denotes |
rich |
T4864 |
5515-5516 |
-RRB- |
denotes |
) |
T4865 |
5517-5520 |
CC |
denotes |
and |
T4866 |
5521-5524 |
DT |
denotes |
the |
T4867 |
5531-5537 |
NN |
denotes |
strand |
T4868 |
5525-5530 |
JJ |
denotes |
other |
T4869 |
5538-5540 |
VBZ |
denotes |
is |
T4870 |
5541-5542 |
NN |
denotes |
G |
T4871 |
5543-5547 |
JJ |
denotes |
rich |
T4872 |
5542-5543 |
HYPH |
denotes |
- |
T4873 |
5548-5549 |
-LRB- |
denotes |
( |
T4874 |
5549-5553 |
JJ |
denotes |
same |
T4875 |
5554-5556 |
IN |
denotes |
as |
T4876 |
5557-5562 |
NN |
denotes |
Bub66 |
T4877 |
5563-5564 |
NN |
denotes |
G |
T4878 |
5562-5563 |
HYPH |
denotes |
/ |
T4879 |
5564-5565 |
HYPH |
denotes |
- |
T4880 |
5565-5569 |
JJ |
denotes |
rich |
T4881 |
5569-5570 |
-RRB- |
denotes |
) |
T4882 |
5571-5572 |
-LRB- |
denotes |
( |
T4883 |
5572-5574 |
CD |
denotes |
13 |
T4884 |
5574-5575 |
-RRB- |
denotes |
) |
T4885 |
5575-5577 |
, |
denotes |
, |
T4886 |
5577-5580 |
CC |
denotes |
and |
T4887 |
5581-5589 |
NN |
denotes |
helicase |
T4888 |
5590-5596 |
NNS |
denotes |
assays |
T4889 |
5602-5611 |
VBN |
denotes |
conducted |
T4890 |
5597-5601 |
VBD |
denotes |
were |
T4891 |
5612-5616 |
IN |
denotes |
with |
T4892 |
5617-5627 |
VBG |
denotes |
increasing |
T4893 |
5628-5634 |
NN |
denotes |
amount |
T4894 |
5635-5637 |
IN |
denotes |
of |
T4895 |
5638-5642 |
NN |
denotes |
Mcm4 |
T4896 |
5642-5643 |
HYPH |
denotes |
/ |
T4897 |
5643-5644 |
CD |
denotes |
6 |
T4898 |
5644-5645 |
HYPH |
denotes |
/ |
T4899 |
5645-5646 |
CD |
denotes |
7 |
T4900 |
5646-5647 |
. |
denotes |
. |
T4901 |
5647-5736 |
sentence |
denotes |
Only weak unwinding was detected on this substrate compared to Bub66/T-rich (Figure 3A). |
T4902 |
5648-5652 |
RB |
denotes |
Only |
T4903 |
5658-5667 |
NN |
denotes |
unwinding |
T4904 |
5653-5657 |
JJ |
denotes |
weak |
T4905 |
5672-5680 |
VBN |
denotes |
detected |
T4906 |
5668-5671 |
VBD |
denotes |
was |
T4907 |
5681-5683 |
IN |
denotes |
on |
T4908 |
5684-5688 |
DT |
denotes |
this |
T4909 |
5689-5698 |
NN |
denotes |
substrate |
T4910 |
5699-5707 |
VBN |
denotes |
compared |
T4911 |
5708-5710 |
IN |
denotes |
to |
T4912 |
5711-5716 |
NN |
denotes |
Bub66 |
T4913 |
5717-5718 |
NN |
denotes |
T |
T4914 |
5716-5717 |
HYPH |
denotes |
/ |
T4915 |
5718-5719 |
HYPH |
denotes |
- |
T4916 |
5719-5723 |
JJ |
denotes |
rich |
T4917 |
5724-5725 |
-LRB- |
denotes |
( |
T4918 |
5732-5734 |
NN |
denotes |
3A |
T4919 |
5725-5731 |
NN |
denotes |
Figure |
T4920 |
5734-5735 |
-RRB- |
denotes |
) |
T4921 |
5735-5736 |
. |
denotes |
. |
T4922 |
5736-5927 |
sentence |
denotes |
Since Mcm4/6/7 can bind to Bub66/T–G-rich and forms a double hexameric complex (data not shown), the defective unwinding is not due to inefficient loading of the helicase onto the substrate. |
T4923 |
5737-5742 |
IN |
denotes |
Since |
T4924 |
5756-5760 |
VB |
denotes |
bind |
T4925 |
5743-5747 |
NN |
denotes |
Mcm4 |
T4926 |
5747-5748 |
HYPH |
denotes |
/ |
T4927 |
5748-5749 |
CD |
denotes |
6 |
T4928 |
5749-5750 |
HYPH |
denotes |
/ |
T4929 |
5750-5751 |
CD |
denotes |
7 |
T4930 |
5752-5755 |
MD |
denotes |
can |
T4931 |
5858-5860 |
VBZ |
denotes |
is |
T4932 |
5761-5763 |
IN |
denotes |
to |
T4933 |
5764-5769 |
NN |
denotes |
Bub66 |
T4934 |
5772-5773 |
NN |
denotes |
G |
T4935 |
5769-5770 |
HYPH |
denotes |
/ |
T4936 |
5770-5771 |
NN |
denotes |
T |
T4937 |
5771-5772 |
HYPH |
denotes |
– |
T4938 |
5773-5774 |
HYPH |
denotes |
- |
T4939 |
5774-5778 |
JJ |
denotes |
rich |
T4940 |
5779-5782 |
CC |
denotes |
and |
T4941 |
5783-5788 |
VBZ |
denotes |
forms |
T4942 |
5789-5790 |
DT |
denotes |
a |
T4943 |
5808-5815 |
NN |
denotes |
complex |
T4944 |
5791-5797 |
JJ |
denotes |
double |
T4945 |
5798-5807 |
JJ |
denotes |
hexameric |
T4946 |
5816-5817 |
-LRB- |
denotes |
( |
T4947 |
5826-5831 |
VBN |
denotes |
shown |
T4948 |
5817-5821 |
NNS |
denotes |
data |
T4949 |
5822-5825 |
RB |
denotes |
not |
T4950 |
5831-5832 |
-RRB- |
denotes |
) |
T4951 |
5832-5834 |
, |
denotes |
, |
T4952 |
5834-5837 |
DT |
denotes |
the |
T4953 |
5848-5857 |
NN |
denotes |
unwinding |
T4954 |
5838-5847 |
JJ |
denotes |
defective |
T4955 |
5861-5864 |
RB |
denotes |
not |
T4956 |
5865-5868 |
IN |
denotes |
due |
T4957 |
5869-5871 |
IN |
denotes |
to |
T4958 |
5872-5883 |
JJ |
denotes |
inefficient |
T4959 |
5884-5891 |
NN |
denotes |
loading |
T4960 |
5892-5894 |
IN |
denotes |
of |
T4961 |
5895-5898 |
DT |
denotes |
the |
T4962 |
5899-5907 |
NN |
denotes |
helicase |
T4963 |
5908-5912 |
IN |
denotes |
onto |
T4964 |
5913-5916 |
DT |
denotes |
the |
T4965 |
5917-5926 |
NN |
denotes |
substrate |
T4966 |
5926-5927 |
. |
denotes |
. |
T4967 |
5927-6225 |
sentence |
denotes |
If one hexamer interacting with the thymine-rich strand dissociates from the other hexamer and displaces only one of the duplex segments, then it would result in generation of Y-fork structures which could not be further displaced due to the presence of G-rich 3′-tail and would appear on the gel. |
T4968 |
5928-5930 |
IN |
denotes |
If |
T4969 |
5984-5995 |
VBZ |
denotes |
dissociates |
T4970 |
5931-5934 |
CD |
denotes |
one |
T4971 |
5935-5942 |
NN |
denotes |
hexamer |
T4972 |
5943-5954 |
VBG |
denotes |
interacting |
T4973 |
5955-5959 |
IN |
denotes |
with |
T4974 |
5960-5963 |
DT |
denotes |
the |
T4975 |
5977-5983 |
NN |
denotes |
strand |
T4976 |
5964-5971 |
NN |
denotes |
thymine |
T4977 |
5972-5976 |
JJ |
denotes |
rich |
T4978 |
5971-5972 |
HYPH |
denotes |
- |
T4979 |
6080-6086 |
VB |
denotes |
result |
T4980 |
5996-6000 |
IN |
denotes |
from |
T4981 |
6001-6004 |
DT |
denotes |
the |
T4982 |
6011-6018 |
NN |
denotes |
hexamer |
T4983 |
6005-6010 |
JJ |
denotes |
other |
T4984 |
6019-6022 |
CC |
denotes |
and |
T4985 |
6023-6032 |
VBZ |
denotes |
displaces |
T4986 |
6033-6037 |
RB |
denotes |
only |
T4987 |
6038-6041 |
CD |
denotes |
one |
T4988 |
6042-6044 |
IN |
denotes |
of |
T4989 |
6045-6048 |
DT |
denotes |
the |
T4990 |
6056-6064 |
NNS |
denotes |
segments |
T4991 |
6049-6055 |
NN |
denotes |
duplex |
T4992 |
6064-6066 |
, |
denotes |
, |
T4993 |
6066-6070 |
RB |
denotes |
then |
T4994 |
6071-6073 |
PRP |
denotes |
it |
T4995 |
6074-6079 |
MD |
denotes |
would |
T4996 |
6087-6089 |
IN |
denotes |
in |
T4997 |
6090-6100 |
NN |
denotes |
generation |
T4998 |
6101-6103 |
IN |
denotes |
of |
T4999 |
6104-6105 |
NN |
denotes |
Y |
T5000 |
6106-6110 |
NN |
denotes |
fork |
T5001 |
6105-6106 |
HYPH |
denotes |
- |
T5002 |
6111-6121 |
NNS |
denotes |
structures |
T5003 |
6122-6127 |
WDT |
denotes |
which |
T5004 |
6149-6158 |
VBN |
denotes |
displaced |
T5005 |
6128-6133 |
MD |
denotes |
could |
T5006 |
6134-6137 |
RB |
denotes |
not |
T5007 |
6138-6140 |
VB |
denotes |
be |
T5008 |
6141-6148 |
RB |
denotes |
further |
T5009 |
6159-6162 |
IN |
denotes |
due |
T5010 |
6163-6165 |
IN |
denotes |
to |
T5011 |
6166-6169 |
DT |
denotes |
the |
T5012 |
6170-6178 |
NN |
denotes |
presence |
T5013 |
6179-6181 |
IN |
denotes |
of |
T5014 |
6182-6183 |
NN |
denotes |
G |
T5015 |
6184-6188 |
JJ |
denotes |
rich |
T5016 |
6183-6184 |
HYPH |
denotes |
- |
T5017 |
6192-6196 |
NN |
denotes |
tail |
T5018 |
6189-6190 |
CD |
denotes |
3 |
T5019 |
6190-6191 |
SYM |
denotes |
′ |
T5020 |
6191-6192 |
HYPH |
denotes |
- |
T5021 |
6197-6200 |
CC |
denotes |
and |
T5022 |
6201-6206 |
MD |
denotes |
would |
T5023 |
6207-6213 |
VB |
denotes |
appear |
T5024 |
6214-6216 |
IN |
denotes |
on |
T5025 |
6217-6220 |
DT |
denotes |
the |
T5026 |
6221-6224 |
NN |
denotes |
gel |
T5027 |
6224-6225 |
. |
denotes |
. |
T5028 |
6225-6451 |
sentence |
denotes |
However, we did not detect such intermediates during the course of the experiment (Figure 3B), suggesting that bubble can be displaced efficiently only when two molecules of the Mcm4/6/7 hexamers are simultaneously activated. |
T5029 |
6226-6233 |
RB |
denotes |
However |
T5030 |
6246-6252 |
VB |
denotes |
detect |
T5031 |
6233-6235 |
, |
denotes |
, |
T5032 |
6235-6237 |
PRP |
denotes |
we |
T5033 |
6238-6241 |
VBD |
denotes |
did |
T5034 |
6242-6245 |
RB |
denotes |
not |
T5035 |
6253-6257 |
JJ |
denotes |
such |
T5036 |
6258-6271 |
NNS |
denotes |
intermediates |
T5037 |
6272-6278 |
IN |
denotes |
during |
T5038 |
6279-6282 |
DT |
denotes |
the |
T5039 |
6283-6289 |
NN |
denotes |
course |
T5040 |
6290-6292 |
IN |
denotes |
of |
T5041 |
6293-6296 |
DT |
denotes |
the |
T5042 |
6297-6307 |
NN |
denotes |
experiment |
T5043 |
6308-6309 |
-LRB- |
denotes |
( |
T5044 |
6316-6318 |
NN |
denotes |
3B |
T5045 |
6309-6315 |
NN |
denotes |
Figure |
T5046 |
6318-6319 |
-RRB- |
denotes |
) |
T5047 |
6319-6321 |
, |
denotes |
, |
T5048 |
6321-6331 |
VBG |
denotes |
suggesting |
T5049 |
6332-6336 |
IN |
denotes |
that |
T5050 |
6351-6360 |
VBN |
denotes |
displaced |
T5051 |
6337-6343 |
NN |
denotes |
bubble |
T5052 |
6344-6347 |
MD |
denotes |
can |
T5053 |
6348-6350 |
VB |
denotes |
be |
T5054 |
6361-6372 |
RB |
denotes |
efficiently |
T5055 |
6373-6377 |
RB |
denotes |
only |
T5056 |
6441-6450 |
VBN |
denotes |
activated |
T5057 |
6378-6382 |
WRB |
denotes |
when |
T5058 |
6383-6386 |
CD |
denotes |
two |
T5059 |
6387-6396 |
NNS |
denotes |
molecules |
T5060 |
6397-6399 |
IN |
denotes |
of |
T5061 |
6400-6403 |
DT |
denotes |
the |
T5062 |
6413-6421 |
NNS |
denotes |
hexamers |
T5063 |
6404-6408 |
NN |
denotes |
Mcm4 |
T5064 |
6408-6409 |
HYPH |
denotes |
/ |
T5065 |
6409-6410 |
CD |
denotes |
6 |
T5066 |
6410-6411 |
HYPH |
denotes |
/ |
T5067 |
6411-6412 |
CD |
denotes |
7 |
T5068 |
6422-6425 |
VBP |
denotes |
are |
T5069 |
6426-6440 |
RB |
denotes |
simultaneously |
T5070 |
6450-6451 |
. |
denotes |
. |
T5260 |
6453-6460 |
NN |
denotes |
Binding |
T5261 |
6474-6481 |
NNS |
denotes |
actions |
T5262 |
6461-6464 |
CC |
denotes |
and |
T5263 |
6465-6473 |
NN |
denotes |
helicase |
T5264 |
6482-6484 |
IN |
denotes |
of |
T5265 |
6485-6489 |
NN |
denotes |
Mcm4 |
T5266 |
6489-6490 |
HYPH |
denotes |
/ |
T5267 |
6490-6491 |
CD |
denotes |
6 |
T5268 |
6491-6492 |
HYPH |
denotes |
/ |
T5269 |
6492-6493 |
CD |
denotes |
7 |
T5270 |
6494-6496 |
IN |
denotes |
on |
T5271 |
6497-6503 |
VBN |
denotes |
forked |
T5272 |
6528-6538 |
NNS |
denotes |
substrates |
T5273 |
6504-6507 |
CC |
denotes |
and |
T5274 |
6508-6509 |
CD |
denotes |
3 |
T5275 |
6518-6527 |
NN |
denotes |
extension |
T5276 |
6509-6510 |
SYM |
denotes |
′ |
T5277 |
6510-6511 |
HYPH |
denotes |
- |
T5278 |
6512-6514 |
CC |
denotes |
or |
T5279 |
6515-6516 |
CD |
denotes |
5 |
T5280 |
6516-6517 |
SYM |
denotes |
′ |
T5281 |
6517-6518 |
HYPH |
denotes |
- |
T5282 |
6538-6841 |
sentence |
denotes |
In order to examine more precisely the interaction and helicase actions with forked substrates, Y-fork substrates containing a nascent leading strand (A-fork[3′]), nascent lagging strand (A-fork[5′]), or both of them (A-fork[3′,5′]), as well as 5′-extension or 3′-extension structures were constructed. |
T5283 |
6539-6541 |
IN |
denotes |
In |
T5284 |
6829-6840 |
VBN |
denotes |
constructed |
T5285 |
6542-6547 |
NN |
denotes |
order |
T5286 |
6548-6550 |
TO |
denotes |
to |
T5287 |
6551-6558 |
VB |
denotes |
examine |
T5288 |
6559-6563 |
RBR |
denotes |
more |
T5289 |
6564-6573 |
RB |
denotes |
precisely |
T5290 |
6574-6577 |
DT |
denotes |
the |
T5291 |
6578-6589 |
NN |
denotes |
interaction |
T5292 |
6590-6593 |
CC |
denotes |
and |
T5293 |
6594-6602 |
NN |
denotes |
helicase |
T5294 |
6603-6610 |
NNS |
denotes |
actions |
T5295 |
6611-6615 |
IN |
denotes |
with |
T5296 |
6616-6622 |
VBN |
denotes |
forked |
T5297 |
6623-6633 |
NNS |
denotes |
substrates |
T5298 |
6633-6635 |
, |
denotes |
, |
T5299 |
6635-6636 |
NN |
denotes |
Y |
T5300 |
6637-6641 |
NN |
denotes |
fork |
T5301 |
6636-6637 |
HYPH |
denotes |
- |
T5302 |
6642-6652 |
NNS |
denotes |
substrates |
T5303 |
6653-6663 |
VBG |
denotes |
containing |
T5304 |
6664-6665 |
DT |
denotes |
a |
T5305 |
6682-6688 |
NN |
denotes |
strand |
T5306 |
6666-6673 |
JJ |
denotes |
nascent |
T5307 |
6674-6681 |
VBG |
denotes |
leading |
T5308 |
6689-6690 |
-LRB- |
denotes |
( |
T5309 |
6690-6691 |
NN |
denotes |
A |
T5310 |
6692-6696 |
NN |
denotes |
fork |
T5311 |
6691-6692 |
HYPH |
denotes |
- |
T5312 |
6696-6697 |
-LRB- |
denotes |
[ |
T5313 |
6697-6698 |
CD |
denotes |
3 |
T5314 |
6698-6699 |
SYM |
denotes |
′ |
T5315 |
6699-6700 |
-RRB- |
denotes |
] |
T5316 |
6700-6701 |
-RRB- |
denotes |
) |
T5317 |
6701-6703 |
, |
denotes |
, |
T5318 |
6703-6710 |
JJ |
denotes |
nascent |
T5319 |
6719-6725 |
NN |
denotes |
strand |
T5320 |
6711-6718 |
VBG |
denotes |
lagging |
T5321 |
6726-6727 |
-LRB- |
denotes |
( |
T5322 |
6727-6728 |
NN |
denotes |
A |
T5323 |
6729-6733 |
NN |
denotes |
fork |
T5324 |
6728-6729 |
HYPH |
denotes |
- |
T5325 |
6733-6734 |
-LRB- |
denotes |
[ |
T5326 |
6734-6735 |
CD |
denotes |
5 |
T5327 |
6735-6736 |
SYM |
denotes |
′ |
T5328 |
6736-6737 |
-RRB- |
denotes |
] |
T5329 |
6737-6738 |
-RRB- |
denotes |
) |
T5330 |
6738-6740 |
, |
denotes |
, |
T5331 |
6740-6742 |
CC |
denotes |
or |
T5332 |
6743-6747 |
DT |
denotes |
both |
T5333 |
6748-6750 |
IN |
denotes |
of |
T5334 |
6751-6755 |
PRP |
denotes |
them |
T5335 |
6756-6757 |
-LRB- |
denotes |
( |
T5336 |
6757-6758 |
NN |
denotes |
A |
T5337 |
6759-6763 |
NN |
denotes |
fork |
T5338 |
6758-6759 |
HYPH |
denotes |
- |
T5339 |
6813-6823 |
NNS |
denotes |
structures |
T5340 |
6763-6764 |
-LRB- |
denotes |
[ |
T5341 |
6764-6765 |
CD |
denotes |
3 |
T5342 |
6765-6766 |
SYM |
denotes |
′ |
T5343 |
6766-6767 |
, |
denotes |
, |
T5344 |
6767-6768 |
CD |
denotes |
5 |
T5345 |
6768-6769 |
SYM |
denotes |
′ |
T5346 |
6769-6770 |
-RRB- |
denotes |
] |
T5347 |
6770-6771 |
-RRB- |
denotes |
) |
T5348 |
6771-6773 |
, |
denotes |
, |
T5349 |
6773-6775 |
RB |
denotes |
as |
T5350 |
6781-6783 |
IN |
denotes |
as |
T5351 |
6776-6780 |
RB |
denotes |
well |
T5352 |
6784-6785 |
CD |
denotes |
5 |
T5353 |
6787-6796 |
NN |
denotes |
extension |
T5354 |
6785-6786 |
SYM |
denotes |
′ |
T5355 |
6786-6787 |
HYPH |
denotes |
- |
T5356 |
6797-6799 |
CC |
denotes |
or |
T5357 |
6800-6801 |
CD |
denotes |
3 |
T5358 |
6803-6812 |
NN |
denotes |
extension |
T5359 |
6801-6802 |
SYM |
denotes |
′ |
T5360 |
6802-6803 |
HYPH |
denotes |
- |
T5361 |
6824-6828 |
VBD |
denotes |
were |
T5362 |
6840-6841 |
. |
denotes |
. |
T5363 |
6841-6965 |
sentence |
denotes |
Mcm4/6/7 bound to A-fork[3′] or A-fork[5′] with affinity similar to that of a simple Y-fork (Figure 4A and data not shown). |
T5364 |
6842-6846 |
NN |
denotes |
Mcm4 |
T5365 |
6851-6856 |
VBD |
denotes |
bound |
T5366 |
6846-6847 |
HYPH |
denotes |
/ |
T5367 |
6847-6848 |
CD |
denotes |
6 |
T5368 |
6848-6849 |
HYPH |
denotes |
/ |
T5369 |
6849-6850 |
CD |
denotes |
7 |
T5370 |
6857-6859 |
IN |
denotes |
to |
T5371 |
6860-6861 |
NN |
denotes |
A |
T5372 |
6862-6866 |
NN |
denotes |
fork |
T5373 |
6861-6862 |
HYPH |
denotes |
- |
T5374 |
6866-6867 |
-LRB- |
denotes |
[ |
T5375 |
6867-6868 |
CD |
denotes |
3 |
T5376 |
6868-6869 |
SYM |
denotes |
′ |
T5377 |
6869-6870 |
-RRB- |
denotes |
] |
T5378 |
6871-6873 |
CC |
denotes |
or |
T5379 |
6874-6875 |
NN |
denotes |
A |
T5380 |
6876-6880 |
NN |
denotes |
fork |
T5381 |
6875-6876 |
HYPH |
denotes |
- |
T5382 |
6880-6881 |
-LRB- |
denotes |
[ |
T5383 |
6881-6882 |
CD |
denotes |
5 |
T5384 |
6882-6883 |
SYM |
denotes |
′ |
T5385 |
6883-6884 |
-RRB- |
denotes |
] |
T5386 |
6885-6889 |
IN |
denotes |
with |
T5387 |
6890-6898 |
NN |
denotes |
affinity |
T5388 |
6899-6906 |
JJ |
denotes |
similar |
T5389 |
6907-6909 |
IN |
denotes |
to |
T5390 |
6910-6914 |
DT |
denotes |
that |
T5391 |
6915-6917 |
IN |
denotes |
of |
T5392 |
6918-6919 |
DT |
denotes |
a |
T5393 |
6929-6933 |
NN |
denotes |
fork |
T5394 |
6920-6926 |
JJ |
denotes |
simple |
T5395 |
6927-6928 |
NN |
denotes |
Y |
T5396 |
6928-6929 |
HYPH |
denotes |
- |
T5397 |
6934-6935 |
-LRB- |
denotes |
( |
T5398 |
6942-6944 |
NN |
denotes |
4A |
T5399 |
6935-6941 |
NN |
denotes |
Figure |
T5400 |
6945-6948 |
CC |
denotes |
and |
T5401 |
6949-6953 |
NNS |
denotes |
data |
T5402 |
6958-6963 |
VBN |
denotes |
shown |
T5403 |
6954-6957 |
RB |
denotes |
not |
T5404 |
6963-6964 |
-RRB- |
denotes |
) |
T5405 |
6964-6965 |
. |
denotes |
. |
T5406 |
6965-7101 |
sentence |
denotes |
In contrast, PriA helicase, used as a control, bound to A-fork[3′] more efficiently than to A-fork[5′], as reported previously (23,25). |
T5407 |
6966-6968 |
IN |
denotes |
In |
T5408 |
7013-7018 |
VBD |
denotes |
bound |
T5409 |
6969-6977 |
NN |
denotes |
contrast |
T5410 |
6977-6979 |
, |
denotes |
, |
T5411 |
6979-6983 |
NN |
denotes |
PriA |
T5412 |
6984-6992 |
NN |
denotes |
helicase |
T5413 |
6992-6994 |
, |
denotes |
, |
T5414 |
6994-6998 |
VBN |
denotes |
used |
T5415 |
6999-7001 |
IN |
denotes |
as |
T5416 |
7002-7003 |
DT |
denotes |
a |
T5417 |
7004-7011 |
NN |
denotes |
control |
T5418 |
7011-7013 |
, |
denotes |
, |
T5419 |
7019-7021 |
IN |
denotes |
to |
T5420 |
7022-7023 |
NN |
denotes |
A |
T5421 |
7024-7028 |
NN |
denotes |
fork |
T5422 |
7023-7024 |
HYPH |
denotes |
- |
T5423 |
7028-7029 |
-LRB- |
denotes |
[ |
T5424 |
7029-7030 |
CD |
denotes |
3 |
T5425 |
7030-7031 |
SYM |
denotes |
′ |
T5426 |
7031-7032 |
-RRB- |
denotes |
] |
T5427 |
7033-7037 |
RBR |
denotes |
more |
T5428 |
7038-7049 |
RB |
denotes |
efficiently |
T5429 |
7050-7054 |
IN |
denotes |
than |
T5430 |
7055-7057 |
IN |
denotes |
to |
T5431 |
7058-7059 |
NN |
denotes |
A |
T5432 |
7060-7064 |
NN |
denotes |
fork |
T5433 |
7059-7060 |
HYPH |
denotes |
- |
T5434 |
7064-7065 |
-LRB- |
denotes |
[ |
T5435 |
7065-7066 |
CD |
denotes |
5 |
T5436 |
7066-7067 |
SYM |
denotes |
′ |
T5437 |
7067-7068 |
-RRB- |
denotes |
] |
T5438 |
7068-7070 |
, |
denotes |
, |
T5439 |
7070-7072 |
IN |
denotes |
as |
T5440 |
7073-7081 |
VBN |
denotes |
reported |
T5441 |
7082-7092 |
RB |
denotes |
previously |
T5442 |
7093-7094 |
-LRB- |
denotes |
( |
T5443 |
7097-7099 |
CD |
denotes |
25 |
T5444 |
7094-7096 |
CD |
denotes |
23 |
T5445 |
7096-7097 |
, |
denotes |
, |
T5446 |
7099-7100 |
-RRB- |
denotes |
) |
T5447 |
7100-7101 |
. |
denotes |
. |
T5448 |
7101-7244 |
sentence |
denotes |
Mcm4/6/7 bound also to 5′-extension and 3′-extension, albeit with slightly reduced affinity compared to A-fork[3′] and A-fork[5′] (Figure 4A). |
T5449 |
7102-7106 |
NN |
denotes |
Mcm4 |
T5450 |
7111-7116 |
VBD |
denotes |
bound |
T5451 |
7106-7107 |
HYPH |
denotes |
/ |
T5452 |
7107-7108 |
CD |
denotes |
6 |
T5453 |
7108-7109 |
HYPH |
denotes |
/ |
T5454 |
7109-7110 |
CD |
denotes |
7 |
T5455 |
7117-7121 |
RB |
denotes |
also |
T5456 |
7122-7124 |
IN |
denotes |
to |
T5457 |
7125-7126 |
CD |
denotes |
5 |
T5458 |
7128-7137 |
NN |
denotes |
extension |
T5459 |
7126-7127 |
SYM |
denotes |
′ |
T5460 |
7127-7128 |
HYPH |
denotes |
- |
T5461 |
7138-7141 |
CC |
denotes |
and |
T5462 |
7142-7143 |
CD |
denotes |
3 |
T5463 |
7145-7154 |
NN |
denotes |
extension |
T5464 |
7143-7144 |
SYM |
denotes |
′ |
T5465 |
7144-7145 |
HYPH |
denotes |
- |
T5466 |
7154-7156 |
, |
denotes |
, |
T5467 |
7156-7162 |
IN |
denotes |
albeit |
T5468 |
7163-7167 |
IN |
denotes |
with |
T5469 |
7168-7176 |
RB |
denotes |
slightly |
T5470 |
7177-7184 |
VBN |
denotes |
reduced |
T5471 |
7185-7193 |
NN |
denotes |
affinity |
T5472 |
7194-7202 |
VBN |
denotes |
compared |
T5473 |
7203-7205 |
IN |
denotes |
to |
T5474 |
7206-7207 |
NN |
denotes |
A |
T5475 |
7208-7212 |
NN |
denotes |
fork |
T5476 |
7207-7208 |
HYPH |
denotes |
- |
T5477 |
7212-7213 |
-LRB- |
denotes |
[ |
T5478 |
7213-7214 |
CD |
denotes |
3 |
T5479 |
7214-7215 |
SYM |
denotes |
′ |
T5480 |
7215-7216 |
-RRB- |
denotes |
] |
T5481 |
7217-7220 |
CC |
denotes |
and |
T5482 |
7221-7222 |
NN |
denotes |
A |
T5483 |
7223-7227 |
NN |
denotes |
fork |
T5484 |
7222-7223 |
HYPH |
denotes |
- |
T5485 |
7227-7228 |
-LRB- |
denotes |
[ |
T5486 |
7228-7229 |
CD |
denotes |
5 |
T5487 |
7229-7230 |
SYM |
denotes |
′ |
T5488 |
7230-7231 |
-RRB- |
denotes |
] |
T5489 |
7232-7233 |
-LRB- |
denotes |
( |
T5490 |
7240-7242 |
NN |
denotes |
4A |
T5491 |
7233-7239 |
NN |
denotes |
Figure |
T5492 |
7242-7243 |
-RRB- |
denotes |
) |
T5493 |
7243-7244 |
. |
denotes |
. |
T5494 |
7244-7346 |
sentence |
denotes |
Mcm4/6/7 bound to A-fork[3′,5′] with much lower affinity, and the complex gave rise to a single band. |
T5495 |
7245-7249 |
NN |
denotes |
Mcm4 |
T5496 |
7254-7259 |
VBD |
denotes |
bound |
T5497 |
7249-7250 |
HYPH |
denotes |
/ |
T5498 |
7250-7251 |
CD |
denotes |
6 |
T5499 |
7251-7252 |
HYPH |
denotes |
/ |
T5500 |
7252-7253 |
CD |
denotes |
7 |
T5501 |
7260-7262 |
IN |
denotes |
to |
T5502 |
7263-7264 |
NN |
denotes |
A |
T5503 |
7265-7269 |
NN |
denotes |
fork |
T5504 |
7264-7265 |
HYPH |
denotes |
- |
T5505 |
7269-7270 |
-LRB- |
denotes |
[ |
T5506 |
7270-7271 |
CD |
denotes |
3 |
T5507 |
7271-7272 |
SYM |
denotes |
′ |
T5508 |
7272-7273 |
, |
denotes |
, |
T5509 |
7273-7274 |
CD |
denotes |
5 |
T5510 |
7274-7275 |
SYM |
denotes |
′ |
T5511 |
7275-7276 |
-RRB- |
denotes |
] |
T5512 |
7277-7281 |
IN |
denotes |
with |
T5513 |
7282-7286 |
RB |
denotes |
much |
T5514 |
7287-7292 |
JJR |
denotes |
lower |
T5515 |
7293-7301 |
NN |
denotes |
affinity |
T5516 |
7301-7303 |
, |
denotes |
, |
T5517 |
7303-7306 |
CC |
denotes |
and |
T5518 |
7307-7310 |
DT |
denotes |
the |
T5519 |
7311-7318 |
NN |
denotes |
complex |
T5520 |
7319-7323 |
VBD |
denotes |
gave |
T5521 |
7324-7328 |
NN |
denotes |
rise |
T5522 |
7329-7331 |
IN |
denotes |
to |
T5523 |
7332-7333 |
DT |
denotes |
a |
T5524 |
7341-7345 |
NN |
denotes |
band |
T5525 |
7334-7340 |
JJ |
denotes |
single |
T5526 |
7345-7346 |
. |
denotes |
. |
T5527 |
7346-7528 |
sentence |
denotes |
These findings indicate that the Mcm4/6/7 complex is loaded onto DNA preferentially and efficiently through single-stranded region, regardless of the presence of 3′- or 5′-terminus. |
T5528 |
7347-7352 |
DT |
denotes |
These |
T5529 |
7353-7361 |
NNS |
denotes |
findings |
T5530 |
7362-7370 |
VBP |
denotes |
indicate |
T5531 |
7371-7375 |
IN |
denotes |
that |
T5532 |
7400-7406 |
VBN |
denotes |
loaded |
T5533 |
7376-7379 |
DT |
denotes |
the |
T5534 |
7389-7396 |
NN |
denotes |
complex |
T5535 |
7380-7384 |
NN |
denotes |
Mcm4 |
T5536 |
7384-7385 |
HYPH |
denotes |
/ |
T5537 |
7385-7386 |
CD |
denotes |
6 |
T5538 |
7386-7387 |
HYPH |
denotes |
/ |
T5539 |
7387-7388 |
CD |
denotes |
7 |
T5540 |
7397-7399 |
VBZ |
denotes |
is |
T5541 |
7407-7411 |
IN |
denotes |
onto |
T5542 |
7412-7415 |
NN |
denotes |
DNA |
T5543 |
7416-7430 |
RB |
denotes |
preferentially |
T5544 |
7431-7434 |
CC |
denotes |
and |
T5545 |
7435-7446 |
RB |
denotes |
efficiently |
T5546 |
7447-7454 |
IN |
denotes |
through |
T5547 |
7455-7461 |
JJ |
denotes |
single |
T5548 |
7462-7470 |
VBN |
denotes |
stranded |
T5549 |
7461-7462 |
HYPH |
denotes |
- |
T5550 |
7471-7477 |
NN |
denotes |
region |
T5551 |
7477-7479 |
, |
denotes |
, |
T5552 |
7479-7489 |
RB |
denotes |
regardless |
T5553 |
7490-7492 |
IN |
denotes |
of |
T5554 |
7493-7496 |
DT |
denotes |
the |
T5555 |
7497-7505 |
NN |
denotes |
presence |
T5556 |
7506-7508 |
IN |
denotes |
of |
T5557 |
7509-7510 |
CD |
denotes |
3 |
T5558 |
7519-7527 |
NN |
denotes |
terminus |
T5559 |
7510-7511 |
SYM |
denotes |
′ |
T5560 |
7511-7512 |
HYPH |
denotes |
- |
T5561 |
7513-7515 |
CC |
denotes |
or |
T5562 |
7516-7517 |
CD |
denotes |
5 |
T5563 |
7517-7518 |
SYM |
denotes |
′ |
T5564 |
7518-7519 |
HYPH |
denotes |
- |
T5565 |
7527-7528 |
. |
denotes |
. |
T5566 |
7528-7712 |
sentence |
denotes |
In contrast, only the substrate containing a 3′ single-stranded DNA tail (A-fork[5′]) was efficiently unwound and A-fork[3′] or A-fork[3′,5′], was not unwound by Mcm4/6/7 (Figure 4B). |
T5567 |
7529-7531 |
IN |
denotes |
In |
T5568 |
7631-7638 |
VBN |
denotes |
unwound |
T5569 |
7532-7540 |
NN |
denotes |
contrast |
T5570 |
7540-7542 |
, |
denotes |
, |
T5571 |
7542-7546 |
RB |
denotes |
only |
T5572 |
7551-7560 |
NN |
denotes |
substrate |
T5573 |
7547-7550 |
DT |
denotes |
the |
T5574 |
7561-7571 |
VBG |
denotes |
containing |
T5575 |
7572-7573 |
DT |
denotes |
a |
T5576 |
7597-7601 |
NN |
denotes |
tail |
T5577 |
7574-7575 |
CD |
denotes |
3 |
T5578 |
7575-7576 |
SYM |
denotes |
′ |
T5579 |
7577-7583 |
JJ |
denotes |
single |
T5580 |
7584-7592 |
VBN |
denotes |
stranded |
T5581 |
7583-7584 |
HYPH |
denotes |
- |
T5582 |
7593-7596 |
NN |
denotes |
DNA |
T5583 |
7602-7603 |
-LRB- |
denotes |
( |
T5584 |
7605-7609 |
NN |
denotes |
fork |
T5585 |
7603-7604 |
NN |
denotes |
A |
T5586 |
7604-7605 |
HYPH |
denotes |
- |
T5587 |
7609-7610 |
-LRB- |
denotes |
[ |
T5588 |
7610-7611 |
CD |
denotes |
5 |
T5589 |
7611-7612 |
SYM |
denotes |
′ |
T5590 |
7612-7613 |
-RRB- |
denotes |
] |
T5591 |
7613-7614 |
-RRB- |
denotes |
) |
T5592 |
7615-7618 |
VBD |
denotes |
was |
T5593 |
7619-7630 |
RB |
denotes |
efficiently |
T5594 |
7639-7642 |
CC |
denotes |
and |
T5595 |
7643-7644 |
NN |
denotes |
A |
T5596 |
7645-7649 |
NN |
denotes |
fork |
T5597 |
7644-7645 |
HYPH |
denotes |
- |
T5598 |
7680-7687 |
VBN |
denotes |
unwound |
T5599 |
7649-7650 |
-LRB- |
denotes |
[ |
T5600 |
7650-7651 |
CD |
denotes |
3 |
T5601 |
7651-7652 |
SYM |
denotes |
′ |
T5602 |
7652-7653 |
-RRB- |
denotes |
] |
T5603 |
7654-7656 |
CC |
denotes |
or |
T5604 |
7657-7658 |
NN |
denotes |
A |
T5605 |
7659-7663 |
NN |
denotes |
fork |
T5606 |
7658-7659 |
HYPH |
denotes |
- |
T5607 |
7663-7664 |
-LRB- |
denotes |
[ |
T5608 |
7664-7665 |
CD |
denotes |
3 |
T5609 |
7665-7666 |
SYM |
denotes |
′ |
T5610 |
7666-7667 |
, |
denotes |
, |
T5611 |
7667-7668 |
CD |
denotes |
5 |
T5612 |
7668-7669 |
SYM |
denotes |
′ |
T5613 |
7669-7670 |
-RRB- |
denotes |
] |
T5614 |
7670-7672 |
, |
denotes |
, |
T5615 |
7672-7675 |
VBD |
denotes |
was |
T5616 |
7676-7679 |
RB |
denotes |
not |
T5617 |
7688-7690 |
IN |
denotes |
by |
T5618 |
7691-7695 |
NN |
denotes |
Mcm4 |
T5619 |
7695-7696 |
HYPH |
denotes |
/ |
T5620 |
7696-7697 |
CD |
denotes |
6 |
T5621 |
7697-7698 |
HYPH |
denotes |
/ |
T5622 |
7698-7699 |
CD |
denotes |
7 |
T5623 |
7700-7701 |
-LRB- |
denotes |
( |
T5624 |
7708-7710 |
NN |
denotes |
4B |
T5625 |
7701-7707 |
NN |
denotes |
Figure |
T5626 |
7710-7711 |
-RRB- |
denotes |
) |
T5627 |
7711-7712 |
. |
denotes |
. |
T5628 |
7712-7889 |
sentence |
denotes |
Absence of helicase actions on A-fork[3′,5′] composed only of duplex regions is expected since double-stranded DNA is not able to activate the ATPase activity of Mcm4/6/7 (10). |
T5629 |
7713-7720 |
NN |
denotes |
Absence |
T5630 |
7793-7801 |
VBN |
denotes |
expected |
T5631 |
7721-7723 |
IN |
denotes |
of |
T5632 |
7724-7732 |
NN |
denotes |
helicase |
T5633 |
7733-7740 |
NNS |
denotes |
actions |
T5634 |
7741-7743 |
IN |
denotes |
on |
T5635 |
7744-7745 |
NN |
denotes |
A |
T5636 |
7746-7750 |
NN |
denotes |
fork |
T5637 |
7745-7746 |
HYPH |
denotes |
- |
T5638 |
7750-7751 |
-LRB- |
denotes |
[ |
T5639 |
7751-7752 |
CD |
denotes |
3 |
T5640 |
7752-7753 |
SYM |
denotes |
′ |
T5641 |
7753-7754 |
, |
denotes |
, |
T5642 |
7754-7755 |
CD |
denotes |
5 |
T5643 |
7755-7756 |
SYM |
denotes |
′ |
T5644 |
7756-7757 |
-RRB- |
denotes |
] |
T5645 |
7758-7766 |
VBN |
denotes |
composed |
T5646 |
7767-7771 |
RB |
denotes |
only |
T5647 |
7772-7774 |
IN |
denotes |
of |
T5648 |
7775-7781 |
NN |
denotes |
duplex |
T5649 |
7782-7789 |
NNS |
denotes |
regions |
T5650 |
7790-7792 |
VBZ |
denotes |
is |
T5651 |
7802-7807 |
IN |
denotes |
since |
T5652 |
7828-7830 |
VBZ |
denotes |
is |
T5653 |
7808-7814 |
JJ |
denotes |
double |
T5654 |
7815-7823 |
VBN |
denotes |
stranded |
T5655 |
7814-7815 |
HYPH |
denotes |
- |
T5656 |
7824-7827 |
NN |
denotes |
DNA |
T5657 |
7831-7834 |
RB |
denotes |
not |
T5658 |
7835-7839 |
JJ |
denotes |
able |
T5659 |
7840-7842 |
TO |
denotes |
to |
T5660 |
7843-7851 |
VB |
denotes |
activate |
T5661 |
7852-7855 |
DT |
denotes |
the |
T5662 |
7863-7871 |
NN |
denotes |
activity |
T5663 |
7856-7862 |
NN |
denotes |
ATPase |
T5664 |
7872-7874 |
IN |
denotes |
of |
T5665 |
7875-7879 |
NN |
denotes |
Mcm4 |
T5666 |
7879-7880 |
HYPH |
denotes |
/ |
T5667 |
7880-7881 |
CD |
denotes |
6 |
T5668 |
7881-7882 |
HYPH |
denotes |
/ |
T5669 |
7882-7883 |
CD |
denotes |
7 |
T5670 |
7884-7885 |
-LRB- |
denotes |
( |
T5671 |
7885-7887 |
CD |
denotes |
10 |
T5672 |
7887-7888 |
-RRB- |
denotes |
) |
T5673 |
7888-7889 |
. |
denotes |
. |
T5674 |
7889-8140 |
sentence |
denotes |
In contrast, the PriA, a structure-specific helicase used as a control, binds at the fork junction and unwinds the fork and the nascent lagging strand DNA on A-fork[5′], or unwinds the nascent lagging strand on A-fork[3′,5′], as reported before (25). |
T5675 |
7890-7892 |
IN |
denotes |
In |
T5676 |
7962-7967 |
VBZ |
denotes |
binds |
T5677 |
7893-7901 |
NN |
denotes |
contrast |
T5678 |
7901-7903 |
, |
denotes |
, |
T5679 |
7903-7906 |
DT |
denotes |
the |
T5680 |
7907-7911 |
NN |
denotes |
PriA |
T5681 |
7911-7913 |
, |
denotes |
, |
T5682 |
7913-7914 |
DT |
denotes |
a |
T5683 |
7934-7942 |
NN |
denotes |
helicase |
T5684 |
7915-7924 |
NN |
denotes |
structure |
T5685 |
7925-7933 |
JJ |
denotes |
specific |
T5686 |
7924-7925 |
HYPH |
denotes |
- |
T5687 |
7943-7947 |
VBN |
denotes |
used |
T5688 |
7948-7950 |
IN |
denotes |
as |
T5689 |
7951-7952 |
DT |
denotes |
a |
T5690 |
7953-7960 |
NN |
denotes |
control |
T5691 |
7960-7962 |
, |
denotes |
, |
T5692 |
7968-7970 |
IN |
denotes |
at |
T5693 |
7971-7974 |
DT |
denotes |
the |
T5694 |
7980-7988 |
NN |
denotes |
junction |
T5695 |
7975-7979 |
NN |
denotes |
fork |
T5696 |
7989-7992 |
CC |
denotes |
and |
T5697 |
7993-8000 |
VBZ |
denotes |
unwinds |
T5698 |
8001-8004 |
DT |
denotes |
the |
T5699 |
8005-8009 |
NN |
denotes |
fork |
T5700 |
8010-8013 |
CC |
denotes |
and |
T5701 |
8014-8017 |
DT |
denotes |
the |
T5702 |
8041-8044 |
NN |
denotes |
DNA |
T5703 |
8018-8025 |
JJ |
denotes |
nascent |
T5704 |
8026-8033 |
VBG |
denotes |
lagging |
T5705 |
8034-8040 |
NN |
denotes |
strand |
T5706 |
8045-8047 |
IN |
denotes |
on |
T5707 |
8048-8049 |
NN |
denotes |
A |
T5708 |
8050-8054 |
NN |
denotes |
fork |
T5709 |
8049-8050 |
HYPH |
denotes |
- |
T5710 |
8054-8055 |
-LRB- |
denotes |
[ |
T5711 |
8055-8056 |
CD |
denotes |
5 |
T5712 |
8056-8057 |
SYM |
denotes |
′ |
T5713 |
8057-8058 |
-RRB- |
denotes |
] |
T5714 |
8058-8060 |
, |
denotes |
, |
T5715 |
8060-8062 |
CC |
denotes |
or |
T5716 |
8063-8070 |
VBZ |
denotes |
unwinds |
T5717 |
8071-8074 |
DT |
denotes |
the |
T5718 |
8091-8097 |
NN |
denotes |
strand |
T5719 |
8075-8082 |
JJ |
denotes |
nascent |
T5720 |
8083-8090 |
VBG |
denotes |
lagging |
T5721 |
8098-8100 |
IN |
denotes |
on |
T5722 |
8101-8102 |
NN |
denotes |
A |
T5723 |
8103-8107 |
NN |
denotes |
fork |
T5724 |
8102-8103 |
HYPH |
denotes |
- |
T5725 |
8107-8108 |
-LRB- |
denotes |
[ |
T5726 |
8108-8109 |
CD |
denotes |
3 |
T5727 |
8109-8110 |
SYM |
denotes |
′ |
T5728 |
8110-8111 |
, |
denotes |
, |
T5729 |
8111-8112 |
CD |
denotes |
5 |
T5730 |
8112-8113 |
SYM |
denotes |
′ |
T5731 |
8113-8114 |
-RRB- |
denotes |
] |
T5732 |
8114-8116 |
, |
denotes |
, |
T5733 |
8116-8118 |
IN |
denotes |
as |
T5734 |
8119-8127 |
VBN |
denotes |
reported |
T5735 |
8128-8134 |
RB |
denotes |
before |
T5736 |
8135-8136 |
-LRB- |
denotes |
( |
T5737 |
8136-8138 |
CD |
denotes |
25 |
T5738 |
8138-8139 |
-RRB- |
denotes |
) |
T5739 |
8139-8140 |
. |
denotes |
. |
T5740 |
8140-8304 |
sentence |
denotes |
These results indicate that the Mcm4/6/7 complex binds to single-stranded DNA and that its helicase is activated only in the presence of a single-stranded 3′-tail. |
T5741 |
8141-8146 |
DT |
denotes |
These |
T5742 |
8147-8154 |
NNS |
denotes |
results |
T5743 |
8155-8163 |
VBP |
denotes |
indicate |
T5744 |
8164-8168 |
IN |
denotes |
that |
T5745 |
8190-8195 |
VBZ |
denotes |
binds |
T5746 |
8169-8172 |
DT |
denotes |
the |
T5747 |
8182-8189 |
NN |
denotes |
complex |
T5748 |
8173-8177 |
NN |
denotes |
Mcm4 |
T5749 |
8177-8178 |
HYPH |
denotes |
/ |
T5750 |
8178-8179 |
CD |
denotes |
6 |
T5751 |
8179-8180 |
HYPH |
denotes |
/ |
T5752 |
8180-8181 |
CD |
denotes |
7 |
T5753 |
8196-8198 |
IN |
denotes |
to |
T5754 |
8199-8205 |
JJ |
denotes |
single |
T5755 |
8206-8214 |
VBN |
denotes |
stranded |
T5756 |
8205-8206 |
HYPH |
denotes |
- |
T5757 |
8215-8218 |
NN |
denotes |
DNA |
T5758 |
8219-8222 |
CC |
denotes |
and |
T5759 |
8223-8227 |
IN |
denotes |
that |
T5760 |
8244-8253 |
VBN |
denotes |
activated |
T5761 |
8228-8231 |
PRP$ |
denotes |
its |
T5762 |
8232-8240 |
NN |
denotes |
helicase |
T5763 |
8241-8243 |
VBZ |
denotes |
is |
T5764 |
8254-8258 |
RB |
denotes |
only |
T5765 |
8259-8261 |
IN |
denotes |
in |
T5766 |
8262-8265 |
DT |
denotes |
the |
T5767 |
8266-8274 |
NN |
denotes |
presence |
T5768 |
8275-8277 |
IN |
denotes |
of |
T5769 |
8278-8279 |
DT |
denotes |
a |
T5770 |
8299-8303 |
NN |
denotes |
tail |
T5771 |
8280-8286 |
JJ |
denotes |
single |
T5772 |
8287-8295 |
VBN |
denotes |
stranded |
T5773 |
8286-8287 |
HYPH |
denotes |
- |
T5774 |
8296-8297 |
CD |
denotes |
3 |
T5775 |
8297-8298 |
SYM |
denotes |
′ |
T5776 |
8298-8299 |
HYPH |
denotes |
- |
T5777 |
8303-8304 |
. |
denotes |
. |
T5933 |
8306-8307 |
CD |
denotes |
3 |
T5934 |
8309-8318 |
NN |
denotes |
extension |
T5935 |
8307-8308 |
SYM |
denotes |
′ |
T5936 |
8308-8309 |
HYPH |
denotes |
- |
T5937 |
8341-8350 |
VBN |
denotes |
displaced |
T5938 |
8319-8323 |
IN |
denotes |
with |
T5939 |
8324-8328 |
NN |
denotes |
poly |
T5940 |
8329-8331 |
NN |
denotes |
dT |
T5941 |
8328-8329 |
-LRB- |
denotes |
( |
T5942 |
8333-8337 |
NN |
denotes |
tail |
T5943 |
8331-8332 |
-RRB- |
denotes |
) |
T5944 |
8338-8340 |
VBZ |
denotes |
is |
T5945 |
8351-8353 |
IN |
denotes |
by |
T5946 |
8354-8358 |
NN |
denotes |
Mcm4 |
T5947 |
8358-8359 |
HYPH |
denotes |
/ |
T5948 |
8359-8360 |
CD |
denotes |
6 |
T5949 |
8360-8361 |
HYPH |
denotes |
/ |
T5950 |
8361-8362 |
CD |
denotes |
7 |
T5951 |
8362-8515 |
sentence |
denotes |
It has been reported that the 3′-extension can be unwound by the archaeal Mcm homohexamer but not by fission and budding yeast Mcm complexes (14,26,27). |
T5952 |
8363-8365 |
PRP |
denotes |
It |
T5953 |
8375-8383 |
VBN |
denotes |
reported |
T5954 |
8366-8369 |
VBZ |
denotes |
has |
T5955 |
8370-8374 |
VBN |
denotes |
been |
T5956 |
8384-8388 |
IN |
denotes |
that |
T5957 |
8413-8420 |
JJ |
denotes |
unwound |
T5958 |
8389-8392 |
DT |
denotes |
the |
T5959 |
8396-8405 |
NN |
denotes |
extension |
T5960 |
8393-8394 |
CD |
denotes |
3 |
T5961 |
8394-8395 |
SYM |
denotes |
′ |
T5962 |
8395-8396 |
HYPH |
denotes |
- |
T5963 |
8406-8409 |
MD |
denotes |
can |
T5964 |
8410-8412 |
VB |
denotes |
be |
T5965 |
8421-8423 |
IN |
denotes |
by |
T5966 |
8424-8427 |
DT |
denotes |
the |
T5967 |
8441-8452 |
NN |
denotes |
homohexamer |
T5968 |
8428-8436 |
JJ |
denotes |
archaeal |
T5969 |
8437-8440 |
NN |
denotes |
Mcm |
T5970 |
8453-8456 |
CC |
denotes |
but |
T5971 |
8457-8460 |
RB |
denotes |
not |
T5972 |
8461-8463 |
IN |
denotes |
by |
T5973 |
8464-8471 |
NN |
denotes |
fission |
T5974 |
8494-8503 |
NNS |
denotes |
complexes |
T5975 |
8472-8475 |
CC |
denotes |
and |
T5976 |
8476-8483 |
NN |
denotes |
budding |
T5977 |
8484-8489 |
NN |
denotes |
yeast |
T5978 |
8490-8493 |
NN |
denotes |
Mcm |
T5979 |
8504-8505 |
-LRB- |
denotes |
( |
T5980 |
8511-8513 |
CD |
denotes |
27 |
T5981 |
8505-8507 |
CD |
denotes |
14 |
T5982 |
8507-8508 |
, |
denotes |
, |
T5983 |
8508-8510 |
CD |
denotes |
26 |
T5984 |
8510-8511 |
, |
denotes |
, |
T5985 |
8513-8514 |
-RRB- |
denotes |
) |
T5986 |
8514-8515 |
. |
denotes |
. |
T5987 |
8515-8695 |
sentence |
denotes |
We have constructed 3′-extension substrates containing poly(dT), poly(dA), poly(dC) and poly(dG) 3′-tails in order to examine whether mouse Mcm4/6/7 can displace these substrates. |
T5988 |
8516-8518 |
PRP |
denotes |
We |
T5989 |
8524-8535 |
VBN |
denotes |
constructed |
T5990 |
8519-8523 |
VBP |
denotes |
have |
T5991 |
8536-8537 |
CD |
denotes |
3 |
T5992 |
8539-8548 |
NN |
denotes |
extension |
T5993 |
8537-8538 |
SYM |
denotes |
′ |
T5994 |
8538-8539 |
HYPH |
denotes |
- |
T5995 |
8549-8559 |
NNS |
denotes |
substrates |
T5996 |
8560-8570 |
VBG |
denotes |
containing |
T5997 |
8571-8575 |
NN |
denotes |
poly |
T5998 |
8576-8578 |
NN |
denotes |
dT |
T5999 |
8575-8576 |
-LRB- |
denotes |
( |
T6000 |
8616-8621 |
NNS |
denotes |
tails |
T6001 |
8578-8579 |
-RRB- |
denotes |
) |
T6002 |
8579-8581 |
, |
denotes |
, |
T6003 |
8581-8585 |
NN |
denotes |
poly |
T6004 |
8586-8588 |
NN |
denotes |
dA |
T6005 |
8585-8586 |
-LRB- |
denotes |
( |
T6006 |
8588-8589 |
-RRB- |
denotes |
) |
T6007 |
8589-8591 |
, |
denotes |
, |
T6008 |
8591-8595 |
NN |
denotes |
poly |
T6009 |
8596-8598 |
NN |
denotes |
dC |
T6010 |
8595-8596 |
-LRB- |
denotes |
( |
T6011 |
8598-8599 |
-RRB- |
denotes |
) |
T6012 |
8600-8603 |
CC |
denotes |
and |
T6013 |
8604-8608 |
NN |
denotes |
poly |
T6014 |
8609-8611 |
NN |
denotes |
dG |
T6015 |
8608-8609 |
-LRB- |
denotes |
( |
T6016 |
8611-8612 |
-RRB- |
denotes |
) |
T6017 |
8613-8614 |
CD |
denotes |
3 |
T6018 |
8614-8615 |
SYM |
denotes |
′ |
T6019 |
8615-8616 |
HYPH |
denotes |
- |
T6020 |
8622-8624 |
IN |
denotes |
in |
T6021 |
8625-8630 |
NN |
denotes |
order |
T6022 |
8631-8633 |
TO |
denotes |
to |
T6023 |
8634-8641 |
VB |
denotes |
examine |
T6024 |
8642-8649 |
IN |
denotes |
whether |
T6025 |
8669-8677 |
VB |
denotes |
displace |
T6026 |
8650-8655 |
NN |
denotes |
mouse |
T6027 |
8656-8660 |
NN |
denotes |
Mcm4 |
T6028 |
8660-8661 |
HYPH |
denotes |
/ |
T6029 |
8661-8662 |
CD |
denotes |
6 |
T6030 |
8662-8663 |
HYPH |
denotes |
/ |
T6031 |
8663-8664 |
CD |
denotes |
7 |
T6032 |
8665-8668 |
MD |
denotes |
can |
T6033 |
8678-8683 |
DT |
denotes |
these |
T6034 |
8684-8694 |
NNS |
denotes |
substrates |
T6035 |
8694-8695 |
. |
denotes |
. |
T6036 |
8695-8846 |
sentence |
denotes |
We first found that Mcm4/6/7 binds to dT-, dC- and dG-3′-extension with similar affinity, and to dA-3′-extension with much lower affinity (Figure 5A). |
T6037 |
8696-8698 |
PRP |
denotes |
We |
T6038 |
8705-8710 |
VBD |
denotes |
found |
T6039 |
8699-8704 |
RB |
denotes |
first |
T6040 |
8711-8715 |
IN |
denotes |
that |
T6041 |
8725-8730 |
VBZ |
denotes |
binds |
T6042 |
8716-8720 |
NN |
denotes |
Mcm4 |
T6043 |
8720-8721 |
HYPH |
denotes |
/ |
T6044 |
8721-8722 |
CD |
denotes |
6 |
T6045 |
8722-8723 |
HYPH |
denotes |
/ |
T6046 |
8723-8724 |
CD |
denotes |
7 |
T6047 |
8731-8733 |
IN |
denotes |
to |
T6048 |
8734-8736 |
NN |
denotes |
dT |
T6049 |
8753-8762 |
NN |
denotes |
extension |
T6050 |
8736-8737 |
HYPH |
denotes |
- |
T6051 |
8737-8739 |
, |
denotes |
, |
T6052 |
8739-8741 |
NN |
denotes |
dC |
T6053 |
8741-8742 |
HYPH |
denotes |
- |
T6054 |
8743-8746 |
CC |
denotes |
and |
T6055 |
8747-8749 |
NN |
denotes |
dG |
T6056 |
8749-8750 |
HYPH |
denotes |
- |
T6057 |
8750-8751 |
CD |
denotes |
3 |
T6058 |
8751-8752 |
SYM |
denotes |
′ |
T6059 |
8752-8753 |
HYPH |
denotes |
- |
T6060 |
8763-8767 |
IN |
denotes |
with |
T6061 |
8768-8775 |
JJ |
denotes |
similar |
T6062 |
8776-8784 |
NN |
denotes |
affinity |
T6063 |
8784-8786 |
, |
denotes |
, |
T6064 |
8786-8789 |
CC |
denotes |
and |
T6065 |
8790-8792 |
IN |
denotes |
to |
T6066 |
8793-8795 |
NN |
denotes |
dA |
T6067 |
8799-8808 |
NN |
denotes |
extension |
T6068 |
8795-8796 |
HYPH |
denotes |
- |
T6069 |
8796-8797 |
CD |
denotes |
3 |
T6070 |
8797-8798 |
SYM |
denotes |
′ |
T6071 |
8798-8799 |
HYPH |
denotes |
- |
T6072 |
8809-8813 |
IN |
denotes |
with |
T6073 |
8814-8818 |
RB |
denotes |
much |
T6074 |
8819-8824 |
JJR |
denotes |
lower |
T6075 |
8825-8833 |
NN |
denotes |
affinity |
T6076 |
8834-8835 |
-LRB- |
denotes |
( |
T6077 |
8842-8844 |
NN |
denotes |
5A |
T6078 |
8835-8841 |
NN |
denotes |
Figure |
T6079 |
8844-8845 |
-RRB- |
denotes |
) |
T6080 |
8845-8846 |
. |
denotes |
. |
T6081 |
8846-8977 |
sentence |
denotes |
This is consistent with the previous results that Mcm4/6/7 binds to 50mer oligo-dT, -dC and -dG, but not to a 50mer oligo-dA (13). |
T6082 |
8847-8851 |
DT |
denotes |
This |
T6083 |
8852-8854 |
VBZ |
denotes |
is |
T6084 |
8855-8865 |
JJ |
denotes |
consistent |
T6085 |
8866-8870 |
IN |
denotes |
with |
T6086 |
8871-8874 |
DT |
denotes |
the |
T6087 |
8884-8891 |
NNS |
denotes |
results |
T6088 |
8875-8883 |
JJ |
denotes |
previous |
T6089 |
8892-8896 |
IN |
denotes |
that |
T6090 |
8906-8911 |
VBZ |
denotes |
binds |
T6091 |
8897-8901 |
NN |
denotes |
Mcm4 |
T6092 |
8901-8902 |
HYPH |
denotes |
/ |
T6093 |
8902-8903 |
CD |
denotes |
6 |
T6094 |
8903-8904 |
HYPH |
denotes |
/ |
T6095 |
8904-8905 |
CD |
denotes |
7 |
T6096 |
8912-8914 |
IN |
denotes |
to |
T6097 |
8915-8920 |
NN |
denotes |
50mer |
T6098 |
8927-8929 |
NN |
denotes |
dT |
T6099 |
8921-8926 |
NN |
denotes |
oligo |
T6100 |
8926-8927 |
HYPH |
denotes |
- |
T6101 |
8929-8931 |
, |
denotes |
, |
T6102 |
8931-8932 |
HYPH |
denotes |
- |
T6103 |
8932-8934 |
NN |
denotes |
dC |
T6104 |
8935-8938 |
CC |
denotes |
and |
T6105 |
8939-8940 |
HYPH |
denotes |
- |
T6106 |
8940-8942 |
NN |
denotes |
dG |
T6107 |
8942-8944 |
, |
denotes |
, |
T6108 |
8944-8947 |
CC |
denotes |
but |
T6109 |
8948-8951 |
RB |
denotes |
not |
T6110 |
8952-8954 |
IN |
denotes |
to |
T6111 |
8955-8956 |
DT |
denotes |
a |
T6112 |
8969-8971 |
NN |
denotes |
dA |
T6113 |
8957-8962 |
NN |
denotes |
50mer |
T6114 |
8963-8968 |
NN |
denotes |
oligo |
T6115 |
8968-8969 |
HYPH |
denotes |
- |
T6116 |
8972-8973 |
-LRB- |
denotes |
( |
T6117 |
8973-8975 |
CD |
denotes |
13 |
T6118 |
8975-8976 |
-RRB- |
denotes |
) |
T6119 |
8976-8977 |
. |
denotes |
. |
T6120 |
8977-9145 |
sentence |
denotes |
We found that dT-tailed 3′-extension was displaced efficiently by Mcm 4/6/7 while almost no or very little activity was detected on other substrates (Figure 5B and C). |
T6121 |
8978-8980 |
PRP |
denotes |
We |
T6122 |
8981-8986 |
VBD |
denotes |
found |
T6123 |
8987-8991 |
IN |
denotes |
that |
T6124 |
9019-9028 |
VBN |
denotes |
displaced |
T6125 |
8992-8994 |
NN |
denotes |
dT |
T6126 |
8995-9001 |
VBN |
denotes |
tailed |
T6127 |
8994-8995 |
HYPH |
denotes |
- |
T6128 |
9005-9014 |
NN |
denotes |
extension |
T6129 |
9002-9003 |
CD |
denotes |
3 |
T6130 |
9003-9004 |
SYM |
denotes |
′ |
T6131 |
9004-9005 |
HYPH |
denotes |
- |
T6132 |
9015-9018 |
VBD |
denotes |
was |
T6133 |
9029-9040 |
RB |
denotes |
efficiently |
T6134 |
9041-9043 |
IN |
denotes |
by |
T6135 |
9044-9047 |
NN |
denotes |
Mcm |
T6136 |
9048-9049 |
CD |
denotes |
4 |
T6137 |
9049-9050 |
HYPH |
denotes |
/ |
T6138 |
9050-9051 |
CD |
denotes |
6 |
T6139 |
9051-9052 |
HYPH |
denotes |
/ |
T6140 |
9052-9053 |
CD |
denotes |
7 |
T6141 |
9054-9059 |
IN |
denotes |
while |
T6142 |
9098-9106 |
VBN |
denotes |
detected |
T6143 |
9060-9066 |
RB |
denotes |
almost |
T6144 |
9067-9069 |
DT |
denotes |
no |
T6145 |
9070-9072 |
CC |
denotes |
or |
T6146 |
9073-9077 |
RB |
denotes |
very |
T6147 |
9078-9084 |
JJ |
denotes |
little |
T6148 |
9085-9093 |
NN |
denotes |
activity |
T6149 |
9094-9097 |
VBD |
denotes |
was |
T6150 |
9107-9109 |
IN |
denotes |
on |
T6151 |
9110-9115 |
JJ |
denotes |
other |
T6152 |
9116-9126 |
NNS |
denotes |
substrates |
T6153 |
9127-9128 |
-LRB- |
denotes |
( |
T6154 |
9135-9137 |
NN |
denotes |
5B |
T6155 |
9128-9134 |
NN |
denotes |
Figure |
T6156 |
9138-9141 |
CC |
denotes |
and |
T6157 |
9142-9143 |
NN |
denotes |
C |
T6158 |
9143-9144 |
-RRB- |
denotes |
) |
T6159 |
9144-9145 |
. |
denotes |
. |
T6160 |
9145-9259 |
sentence |
denotes |
This is in sharp contrast to yeast Mcm4/6/7 helicases which are not capable of unwinding 3′-extension substrates. |
T6161 |
9146-9150 |
DT |
denotes |
This |
T6162 |
9151-9153 |
VBZ |
denotes |
is |
T6163 |
9154-9156 |
IN |
denotes |
in |
T6164 |
9157-9162 |
JJ |
denotes |
sharp |
T6165 |
9163-9171 |
NN |
denotes |
contrast |
T6166 |
9172-9174 |
IN |
denotes |
to |
T6167 |
9175-9180 |
NN |
denotes |
yeast |
T6168 |
9190-9199 |
NNS |
denotes |
helicases |
T6169 |
9181-9185 |
NN |
denotes |
Mcm4 |
T6170 |
9185-9186 |
HYPH |
denotes |
/ |
T6171 |
9186-9187 |
CD |
denotes |
6 |
T6172 |
9187-9188 |
HYPH |
denotes |
/ |
T6173 |
9188-9189 |
CD |
denotes |
7 |
T6174 |
9200-9205 |
WDT |
denotes |
which |
T6175 |
9206-9209 |
VBP |
denotes |
are |
T6176 |
9210-9213 |
RB |
denotes |
not |
T6177 |
9214-9221 |
JJ |
denotes |
capable |
T6178 |
9222-9224 |
IN |
denotes |
of |
T6179 |
9225-9234 |
VBG |
denotes |
unwinding |
T6180 |
9235-9236 |
CD |
denotes |
3 |
T6181 |
9238-9247 |
NN |
denotes |
extension |
T6182 |
9236-9237 |
SYM |
denotes |
′ |
T6183 |
9237-9238 |
HYPH |
denotes |
- |
T6184 |
9248-9258 |
NNS |
denotes |
substrates |
T6185 |
9258-9259 |
. |
denotes |
. |
T6186 |
9259-9365 |
sentence |
denotes |
Furthermore, dT-tailed 5′-extension, to which Mcm4/6/7 could bind, was not displaced by the Mcm helicase. |
T6187 |
9260-9271 |
RB |
denotes |
Furthermore |
T6188 |
9335-9344 |
VBN |
denotes |
displaced |
T6189 |
9271-9273 |
, |
denotes |
, |
T6190 |
9273-9275 |
NN |
denotes |
dT |
T6191 |
9276-9282 |
VBN |
denotes |
tailed |
T6192 |
9275-9276 |
HYPH |
denotes |
- |
T6193 |
9286-9295 |
NN |
denotes |
extension |
T6194 |
9283-9284 |
CD |
denotes |
5 |
T6195 |
9284-9285 |
SYM |
denotes |
′ |
T6196 |
9285-9286 |
HYPH |
denotes |
- |
T6197 |
9295-9297 |
, |
denotes |
, |
T6198 |
9297-9299 |
IN |
denotes |
to |
T6199 |
9321-9325 |
VB |
denotes |
bind |
T6200 |
9300-9305 |
WDT |
denotes |
which |
T6201 |
9306-9310 |
NN |
denotes |
Mcm4 |
T6202 |
9310-9311 |
HYPH |
denotes |
/ |
T6203 |
9311-9312 |
CD |
denotes |
6 |
T6204 |
9312-9313 |
HYPH |
denotes |
/ |
T6205 |
9313-9314 |
CD |
denotes |
7 |
T6206 |
9315-9320 |
MD |
denotes |
could |
T6207 |
9325-9327 |
, |
denotes |
, |
T6208 |
9327-9330 |
VBD |
denotes |
was |
T6209 |
9331-9334 |
RB |
denotes |
not |
T6210 |
9345-9347 |
IN |
denotes |
by |
T6211 |
9348-9351 |
DT |
denotes |
the |
T6212 |
9356-9364 |
NN |
denotes |
helicase |
T6213 |
9352-9355 |
NN |
denotes |
Mcm |
T6214 |
9364-9365 |
. |
denotes |
. |
T6215 |
9365-9556 |
sentence |
denotes |
The addition of the 5′-tail to dT-tailed 3′-extension further stimulated the displacement (Figure 5D), confirming the previous report that the fork structures facilitate the helicase action. |
T6216 |
9366-9369 |
DT |
denotes |
The |
T6217 |
9370-9378 |
NN |
denotes |
addition |
T6218 |
9428-9438 |
VBD |
denotes |
stimulated |
T6219 |
9379-9381 |
IN |
denotes |
of |
T6220 |
9382-9385 |
DT |
denotes |
the |
T6221 |
9389-9393 |
NN |
denotes |
tail |
T6222 |
9386-9387 |
CD |
denotes |
5 |
T6223 |
9387-9388 |
SYM |
denotes |
′ |
T6224 |
9388-9389 |
HYPH |
denotes |
- |
T6225 |
9394-9396 |
IN |
denotes |
to |
T6226 |
9397-9399 |
NN |
denotes |
dT |
T6227 |
9400-9406 |
VBN |
denotes |
tailed |
T6228 |
9399-9400 |
HYPH |
denotes |
- |
T6229 |
9410-9419 |
NN |
denotes |
extension |
T6230 |
9407-9408 |
CD |
denotes |
3 |
T6231 |
9408-9409 |
SYM |
denotes |
′ |
T6232 |
9409-9410 |
HYPH |
denotes |
- |
T6233 |
9420-9427 |
RB |
denotes |
further |
T6234 |
9439-9442 |
DT |
denotes |
the |
T6235 |
9443-9455 |
NN |
denotes |
displacement |
T6236 |
9456-9457 |
-LRB- |
denotes |
( |
T6237 |
9464-9466 |
NN |
denotes |
5D |
T6238 |
9457-9463 |
NN |
denotes |
Figure |
T6239 |
9466-9467 |
-RRB- |
denotes |
) |
T6240 |
9467-9469 |
, |
denotes |
, |
T6241 |
9469-9479 |
VBG |
denotes |
confirming |
T6242 |
9480-9483 |
DT |
denotes |
the |
T6243 |
9493-9499 |
NN |
denotes |
report |
T6244 |
9484-9492 |
JJ |
denotes |
previous |
T6245 |
9500-9504 |
IN |
denotes |
that |
T6246 |
9525-9535 |
VBP |
denotes |
facilitate |
T6247 |
9505-9508 |
DT |
denotes |
the |
T6248 |
9514-9524 |
NNS |
denotes |
structures |
T6249 |
9509-9513 |
NN |
denotes |
fork |
T6250 |
9536-9539 |
DT |
denotes |
the |
T6251 |
9549-9555 |
NN |
denotes |
action |
T6252 |
9540-9548 |
NN |
denotes |
helicase |
T6253 |
9555-9556 |
. |
denotes |
. |
T6254 |
9556-9720 |
sentence |
denotes |
Thus, these results further strengthen our conclusion that the mammalian Mcm helicase is generally activated by the thymine-stretch on the 3′-single-stranded tail. |
T6255 |
9557-9561 |
RB |
denotes |
Thus |
T6256 |
9585-9595 |
VB |
denotes |
strengthen |
T6257 |
9561-9563 |
, |
denotes |
, |
T6258 |
9563-9568 |
DT |
denotes |
these |
T6259 |
9569-9576 |
NNS |
denotes |
results |
T6260 |
9577-9584 |
RB |
denotes |
further |
T6261 |
9596-9599 |
PRP$ |
denotes |
our |
T6262 |
9600-9610 |
NN |
denotes |
conclusion |
T6263 |
9611-9615 |
IN |
denotes |
that |
T6264 |
9656-9665 |
VBN |
denotes |
activated |
T6265 |
9616-9619 |
DT |
denotes |
the |
T6266 |
9634-9642 |
NN |
denotes |
helicase |
T6267 |
9620-9629 |
JJ |
denotes |
mammalian |
T6268 |
9630-9633 |
NN |
denotes |
Mcm |
T6269 |
9643-9645 |
VBZ |
denotes |
is |
T6270 |
9646-9655 |
RB |
denotes |
generally |
T6271 |
9666-9668 |
IN |
denotes |
by |
T6272 |
9669-9672 |
DT |
denotes |
the |
T6273 |
9681-9688 |
NN |
denotes |
stretch |
T6274 |
9673-9680 |
NN |
denotes |
thymine |
T6275 |
9680-9681 |
HYPH |
denotes |
- |
T6276 |
9689-9691 |
IN |
denotes |
on |
T6277 |
9692-9695 |
DT |
denotes |
the |
T6278 |
9715-9719 |
NN |
denotes |
tail |
T6279 |
9696-9697 |
CD |
denotes |
3 |
T6280 |
9697-9698 |
SYM |
denotes |
′ |
T6281 |
9698-9699 |
HYPH |
denotes |
- |
T6282 |
9699-9705 |
JJ |
denotes |
single |
T6283 |
9706-9714 |
VBN |
denotes |
stranded |
T6284 |
9705-9706 |
HYPH |
denotes |
- |
T6285 |
9719-9720 |
. |
denotes |
. |
T6404 |
9722-9725 |
DT |
denotes |
The |
T6405 |
9726-9733 |
NNS |
denotes |
effects |
T6406 |
9734-9736 |
IN |
denotes |
of |
T6407 |
9737-9740 |
DT |
denotes |
the |
T6408 |
9749-9756 |
NN |
denotes |
content |
T6409 |
9741-9748 |
NN |
denotes |
thymine |
T6410 |
9757-9759 |
IN |
denotes |
of |
T6411 |
9760-9763 |
DT |
denotes |
the |
T6412 |
9767-9771 |
NN |
denotes |
tail |
T6413 |
9764-9765 |
CD |
denotes |
3 |
T6414 |
9765-9766 |
SYM |
denotes |
′ |
T6415 |
9766-9767 |
HYPH |
denotes |
- |
T6416 |
9772-9774 |
IN |
denotes |
on |
T6417 |
9775-9778 |
NN |
denotes |
Mcm |
T6418 |
9779-9787 |
NN |
denotes |
helicase |
T6419 |
9788-9796 |
NN |
denotes |
activity |
T6420 |
9796-9933 |
sentence |
denotes |
We next examined more systematically the effect of the compositions of the thymine residues of the 3′-tail on the Mcm helicase activity. |
T6421 |
9797-9799 |
PRP |
denotes |
We |
T6422 |
9805-9813 |
VBD |
denotes |
examined |
T6423 |
9800-9804 |
RB |
denotes |
next |
T6424 |
9814-9818 |
RBR |
denotes |
more |
T6425 |
9819-9833 |
RB |
denotes |
systematically |
T6426 |
9834-9837 |
DT |
denotes |
the |
T6427 |
9838-9844 |
NN |
denotes |
effect |
T6428 |
9845-9847 |
IN |
denotes |
of |
T6429 |
9848-9851 |
DT |
denotes |
the |
T6430 |
9852-9864 |
NNS |
denotes |
compositions |
T6431 |
9865-9867 |
IN |
denotes |
of |
T6432 |
9868-9871 |
DT |
denotes |
the |
T6433 |
9880-9888 |
NNS |
denotes |
residues |
T6434 |
9872-9879 |
NN |
denotes |
thymine |
T6435 |
9889-9891 |
IN |
denotes |
of |
T6436 |
9892-9895 |
DT |
denotes |
the |
T6437 |
9899-9903 |
NN |
denotes |
tail |
T6438 |
9896-9897 |
CD |
denotes |
3 |
T6439 |
9897-9898 |
SYM |
denotes |
′ |
T6440 |
9898-9899 |
HYPH |
denotes |
- |
T6441 |
9904-9906 |
IN |
denotes |
on |
T6442 |
9907-9910 |
DT |
denotes |
the |
T6443 |
9924-9932 |
NN |
denotes |
activity |
T6444 |
9911-9914 |
NN |
denotes |
Mcm |
T6445 |
9915-9923 |
NN |
denotes |
helicase |
T6446 |
9932-9933 |
. |
denotes |
. |
T6447 |
9933-10180 |
sentence |
denotes |
A partial heteroduplex M13 single-stranded DNA containing a 37 bp duplex region in the presence or absence of the 50 nt long 3′-tail of various nucleotide compositions were constructed and the unwinding by mouse Mcm4/6/7 was examined (Figure 6A). |
T6448 |
9934-9935 |
DT |
denotes |
A |
T6449 |
9977-9980 |
NN |
denotes |
DNA |
T6450 |
9936-9943 |
JJ |
denotes |
partial |
T6451 |
9944-9956 |
NN |
denotes |
heteroduplex |
T6452 |
9957-9960 |
NN |
denotes |
M13 |
T6453 |
9961-9967 |
JJ |
denotes |
single |
T6454 |
9968-9976 |
VBN |
denotes |
stranded |
T6455 |
9967-9968 |
HYPH |
denotes |
- |
T6456 |
10107-10118 |
VBN |
denotes |
constructed |
T6457 |
9981-9991 |
VBG |
denotes |
containing |
T6458 |
9992-9993 |
DT |
denotes |
a |
T6459 |
10007-10013 |
NN |
denotes |
region |
T6460 |
9994-9996 |
CD |
denotes |
37 |
T6461 |
9997-9999 |
NN |
denotes |
bp |
T6462 |
10000-10006 |
NN |
denotes |
duplex |
T6463 |
10014-10016 |
IN |
denotes |
in |
T6464 |
10017-10020 |
DT |
denotes |
the |
T6465 |
10021-10029 |
NN |
denotes |
presence |
T6466 |
10030-10032 |
CC |
denotes |
or |
T6467 |
10033-10040 |
NN |
denotes |
absence |
T6468 |
10041-10043 |
IN |
denotes |
of |
T6469 |
10044-10047 |
DT |
denotes |
the |
T6470 |
10062-10066 |
NN |
denotes |
tail |
T6471 |
10048-10050 |
CD |
denotes |
50 |
T6472 |
10051-10053 |
NN |
denotes |
nt |
T6473 |
10054-10058 |
JJ |
denotes |
long |
T6474 |
10059-10060 |
CD |
denotes |
3 |
T6475 |
10060-10061 |
SYM |
denotes |
′ |
T6476 |
10061-10062 |
HYPH |
denotes |
- |
T6477 |
10067-10069 |
IN |
denotes |
of |
T6478 |
10070-10077 |
JJ |
denotes |
various |
T6479 |
10089-10101 |
NNS |
denotes |
compositions |
T6480 |
10078-10088 |
NN |
denotes |
nucleotide |
T6481 |
10102-10106 |
VBD |
denotes |
were |
T6482 |
10119-10122 |
CC |
denotes |
and |
T6483 |
10123-10126 |
DT |
denotes |
the |
T6484 |
10127-10136 |
NN |
denotes |
unwinding |
T6485 |
10159-10167 |
VBN |
denotes |
examined |
T6486 |
10137-10139 |
IN |
denotes |
by |
T6487 |
10140-10145 |
NN |
denotes |
mouse |
T6488 |
10146-10150 |
NN |
denotes |
Mcm4 |
T6489 |
10150-10151 |
HYPH |
denotes |
/ |
T6490 |
10151-10152 |
CD |
denotes |
6 |
T6491 |
10152-10153 |
HYPH |
denotes |
/ |
T6492 |
10153-10154 |
CD |
denotes |
7 |
T6493 |
10155-10158 |
VBD |
denotes |
was |
T6494 |
10168-10169 |
-LRB- |
denotes |
( |
T6495 |
10176-10178 |
NN |
denotes |
6A |
T6496 |
10169-10175 |
NN |
denotes |
Figure |
T6497 |
10178-10179 |
-RRB- |
denotes |
) |
T6498 |
10179-10180 |
. |
denotes |
. |
T6499 |
10180-10308 |
sentence |
denotes |
Due to its low processivity, Mcm4/6/7 barely displaced the annealed 37mer oligonucleotide without a 3′-tail (37mer; Figure 6A). |
T6500 |
10181-10184 |
IN |
denotes |
Due |
T6501 |
10226-10235 |
VBD |
denotes |
displaced |
T6502 |
10185-10187 |
IN |
denotes |
to |
T6503 |
10188-10191 |
PRP$ |
denotes |
its |
T6504 |
10196-10208 |
NN |
denotes |
processivity |
T6505 |
10192-10195 |
JJ |
denotes |
low |
T6506 |
10208-10210 |
, |
denotes |
, |
T6507 |
10210-10214 |
NN |
denotes |
Mcm4 |
T6508 |
10214-10215 |
HYPH |
denotes |
/ |
T6509 |
10215-10216 |
CD |
denotes |
6 |
T6510 |
10216-10217 |
HYPH |
denotes |
/ |
T6511 |
10217-10218 |
CD |
denotes |
7 |
T6512 |
10219-10225 |
RB |
denotes |
barely |
T6513 |
10236-10239 |
DT |
denotes |
the |
T6514 |
10255-10270 |
NN |
denotes |
oligonucleotide |
T6515 |
10240-10248 |
JJ |
denotes |
annealed |
T6516 |
10249-10254 |
NN |
denotes |
37mer |
T6517 |
10271-10278 |
IN |
denotes |
without |
T6518 |
10279-10280 |
DT |
denotes |
a |
T6519 |
10284-10288 |
NN |
denotes |
tail |
T6520 |
10281-10282 |
CD |
denotes |
3 |
T6521 |
10282-10283 |
SYM |
denotes |
′ |
T6522 |
10283-10284 |
HYPH |
denotes |
- |
T6523 |
10289-10290 |
-LRB- |
denotes |
( |
T6524 |
10304-10306 |
NN |
denotes |
6A |
T6525 |
10290-10295 |
NN |
denotes |
37mer |
T6526 |
10295-10296 |
: |
denotes |
; |
T6527 |
10297-10303 |
NN |
denotes |
Figure |
T6528 |
10306-10307 |
-RRB- |
denotes |
) |
T6529 |
10307-10308 |
. |
denotes |
. |
T6530 |
10308-10501 |
sentence |
denotes |
Only weak helicase activity was observed on the substrate carrying the 3′-tail of 25 repeats of TA dinucleotide (37-TA25; Figure 6A), whereas strong helicase activity was observed on 37-TTA17. |
T6531 |
10309-10313 |
RB |
denotes |
Only |
T6532 |
10328-10336 |
NN |
denotes |
activity |
T6533 |
10314-10318 |
JJ |
denotes |
weak |
T6534 |
10319-10327 |
NN |
denotes |
helicase |
T6535 |
10341-10349 |
VBN |
denotes |
observed |
T6536 |
10337-10340 |
VBD |
denotes |
was |
T6537 |
10350-10352 |
IN |
denotes |
on |
T6538 |
10353-10356 |
DT |
denotes |
the |
T6539 |
10357-10366 |
NN |
denotes |
substrate |
T6540 |
10367-10375 |
VBG |
denotes |
carrying |
T6541 |
10376-10379 |
DT |
denotes |
the |
T6542 |
10383-10387 |
NN |
denotes |
tail |
T6543 |
10380-10381 |
CD |
denotes |
3 |
T6544 |
10381-10382 |
SYM |
denotes |
′ |
T6545 |
10382-10383 |
HYPH |
denotes |
- |
T6546 |
10388-10390 |
IN |
denotes |
of |
T6547 |
10391-10393 |
CD |
denotes |
25 |
T6548 |
10394-10401 |
NNS |
denotes |
repeats |
T6549 |
10402-10404 |
IN |
denotes |
of |
T6550 |
10405-10407 |
NN |
denotes |
TA |
T6551 |
10408-10420 |
NN |
denotes |
dinucleotide |
T6552 |
10421-10422 |
-LRB- |
denotes |
( |
T6553 |
10438-10440 |
NN |
denotes |
6A |
T6554 |
10422-10424 |
CD |
denotes |
37 |
T6555 |
10425-10429 |
NN |
denotes |
TA25 |
T6556 |
10424-10425 |
HYPH |
denotes |
- |
T6557 |
10429-10430 |
: |
denotes |
; |
T6558 |
10431-10437 |
NN |
denotes |
Figure |
T6559 |
10440-10441 |
-RRB- |
denotes |
) |
T6560 |
10441-10443 |
, |
denotes |
, |
T6561 |
10443-10450 |
IN |
denotes |
whereas |
T6562 |
10480-10488 |
VBN |
denotes |
observed |
T6563 |
10451-10457 |
JJ |
denotes |
strong |
T6564 |
10467-10475 |
NN |
denotes |
activity |
T6565 |
10458-10466 |
NN |
denotes |
helicase |
T6566 |
10476-10479 |
VBD |
denotes |
was |
T6567 |
10489-10491 |
IN |
denotes |
on |
T6568 |
10492-10494 |
CD |
denotes |
37 |
T6569 |
10495-10500 |
NN |
denotes |
TTA17 |
T6570 |
10494-10495 |
HYPH |
denotes |
- |
T6571 |
10500-10501 |
. |
denotes |
. |
T6572 |
10501-10751 |
sentence |
denotes |
Increase of thymine content on the 3′-tail did not further increase the extent of unwinding (37-TTTA13, 37-TTTTA10 and 37-T50; Figure 6A), suggesting that 17 repeats of TT dinucleotides (67% thymine) may be sufficient for activation of Mcm helicase. |
T6573 |
10502-10510 |
NN |
denotes |
Increase |
T6574 |
10561-10569 |
VB |
denotes |
increase |
T6575 |
10511-10513 |
IN |
denotes |
of |
T6576 |
10514-10521 |
NN |
denotes |
thymine |
T6577 |
10522-10529 |
NN |
denotes |
content |
T6578 |
10530-10532 |
IN |
denotes |
on |
T6579 |
10533-10536 |
DT |
denotes |
the |
T6580 |
10540-10544 |
NN |
denotes |
tail |
T6581 |
10537-10538 |
CD |
denotes |
3 |
T6582 |
10538-10539 |
SYM |
denotes |
′ |
T6583 |
10539-10540 |
HYPH |
denotes |
- |
T6584 |
10545-10548 |
VBD |
denotes |
did |
T6585 |
10549-10552 |
RB |
denotes |
not |
T6586 |
10553-10560 |
RB |
denotes |
further |
T6587 |
10570-10573 |
DT |
denotes |
the |
T6588 |
10574-10580 |
NN |
denotes |
extent |
T6589 |
10581-10583 |
IN |
denotes |
of |
T6590 |
10584-10593 |
NN |
denotes |
unwinding |
T6591 |
10594-10595 |
-LRB- |
denotes |
( |
T6592 |
10636-10638 |
NN |
denotes |
6A |
T6593 |
10595-10597 |
CD |
denotes |
37 |
T6594 |
10598-10604 |
NN |
denotes |
TTTA13 |
T6595 |
10597-10598 |
HYPH |
denotes |
- |
T6596 |
10604-10606 |
, |
denotes |
, |
T6597 |
10606-10608 |
CD |
denotes |
37 |
T6598 |
10609-10616 |
NN |
denotes |
TTTTA10 |
T6599 |
10608-10609 |
HYPH |
denotes |
- |
T6600 |
10617-10620 |
CC |
denotes |
and |
T6601 |
10621-10623 |
CD |
denotes |
37 |
T6602 |
10624-10627 |
NN |
denotes |
T50 |
T6603 |
10623-10624 |
HYPH |
denotes |
- |
T6604 |
10627-10628 |
: |
denotes |
; |
T6605 |
10629-10635 |
NN |
denotes |
Figure |
T6606 |
10638-10639 |
-RRB- |
denotes |
) |
T6607 |
10639-10641 |
, |
denotes |
, |
T6608 |
10641-10651 |
VBG |
denotes |
suggesting |
T6609 |
10652-10656 |
IN |
denotes |
that |
T6610 |
10706-10708 |
VB |
denotes |
be |
T6611 |
10657-10659 |
CD |
denotes |
17 |
T6612 |
10660-10667 |
NNS |
denotes |
repeats |
T6613 |
10668-10670 |
IN |
denotes |
of |
T6614 |
10671-10673 |
NN |
denotes |
TT |
T6615 |
10674-10687 |
NNS |
denotes |
dinucleotides |
T6616 |
10688-10689 |
-LRB- |
denotes |
( |
T6617 |
10693-10700 |
NN |
denotes |
thymine |
T6618 |
10689-10691 |
CD |
denotes |
67 |
T6619 |
10691-10692 |
NN |
denotes |
% |
T6620 |
10700-10701 |
-RRB- |
denotes |
) |
T6621 |
10702-10705 |
MD |
denotes |
may |
T6622 |
10709-10719 |
JJ |
denotes |
sufficient |
T6623 |
10720-10723 |
IN |
denotes |
for |
T6624 |
10724-10734 |
NN |
denotes |
activation |
T6625 |
10735-10737 |
IN |
denotes |
of |
T6626 |
10738-10741 |
NN |
denotes |
Mcm |
T6627 |
10742-10750 |
NN |
denotes |
helicase |
T6628 |
10750-10751 |
. |
denotes |
. |
T6629 |
10751-10952 |
sentence |
denotes |
It should be noted that the TA25 tail would self-anneal and this would prevent the loading of Mcm, since the 3′-tail containing TTAA13 or TTTAAA8 did not enhance the unwinding either (data not shown). |
T6630 |
10752-10754 |
PRP |
denotes |
It |
T6631 |
10765-10770 |
VBN |
denotes |
noted |
T6632 |
10755-10761 |
MD |
denotes |
should |
T6633 |
10762-10764 |
VB |
denotes |
be |
T6634 |
10771-10775 |
IN |
denotes |
that |
T6635 |
10801-10807 |
VB |
denotes |
anneal |
T6636 |
10776-10779 |
DT |
denotes |
the |
T6637 |
10785-10789 |
NN |
denotes |
tail |
T6638 |
10780-10784 |
NN |
denotes |
TA25 |
T6639 |
10790-10795 |
MD |
denotes |
would |
T6640 |
10796-10800 |
NN |
denotes |
self |
T6641 |
10800-10801 |
HYPH |
denotes |
- |
T6642 |
10808-10811 |
CC |
denotes |
and |
T6643 |
10812-10816 |
DT |
denotes |
this |
T6644 |
10823-10830 |
VB |
denotes |
prevent |
T6645 |
10817-10822 |
MD |
denotes |
would |
T6646 |
10831-10834 |
DT |
denotes |
the |
T6647 |
10835-10842 |
NN |
denotes |
loading |
T6648 |
10843-10845 |
IN |
denotes |
of |
T6649 |
10846-10849 |
NN |
denotes |
Mcm |
T6650 |
10849-10851 |
, |
denotes |
, |
T6651 |
10851-10856 |
IN |
denotes |
since |
T6652 |
10906-10913 |
VB |
denotes |
enhance |
T6653 |
10857-10860 |
DT |
denotes |
the |
T6654 |
10864-10868 |
NN |
denotes |
tail |
T6655 |
10861-10862 |
CD |
denotes |
3 |
T6656 |
10862-10863 |
SYM |
denotes |
′ |
T6657 |
10863-10864 |
HYPH |
denotes |
- |
T6658 |
10869-10879 |
VBG |
denotes |
containing |
T6659 |
10880-10886 |
NN |
denotes |
TTAA13 |
T6660 |
10887-10889 |
CC |
denotes |
or |
T6661 |
10890-10897 |
NN |
denotes |
TTTAAA8 |
T6662 |
10898-10901 |
VBD |
denotes |
did |
T6663 |
10902-10905 |
RB |
denotes |
not |
T6664 |
10914-10917 |
DT |
denotes |
the |
T6665 |
10918-10927 |
NN |
denotes |
unwinding |
T6666 |
10928-10934 |
RB |
denotes |
either |
T6667 |
10935-10936 |
-LRB- |
denotes |
( |
T6668 |
10945-10950 |
VBN |
denotes |
shown |
T6669 |
10936-10940 |
NNS |
denotes |
data |
T6670 |
10941-10944 |
RB |
denotes |
not |
T6671 |
10950-10951 |
-RRB- |
denotes |
) |
T6672 |
10951-10952 |
. |
denotes |
. |
T6673 |
10952-11052 |
sentence |
denotes |
Therefore, we next examined the effects of repeating sequences of thymine and cytosine (Figure 6B). |
T6674 |
10953-10962 |
RB |
denotes |
Therefore |
T6675 |
10972-10980 |
VBD |
denotes |
examined |
T6676 |
10962-10964 |
, |
denotes |
, |
T6677 |
10964-10966 |
PRP |
denotes |
we |
T6678 |
10967-10971 |
RB |
denotes |
next |
T6679 |
10981-10984 |
DT |
denotes |
the |
T6680 |
10985-10992 |
NNS |
denotes |
effects |
T6681 |
10993-10995 |
IN |
denotes |
of |
T6682 |
10996-11005 |
VBG |
denotes |
repeating |
T6683 |
11006-11015 |
NNS |
denotes |
sequences |
T6684 |
11016-11018 |
IN |
denotes |
of |
T6685 |
11019-11026 |
NN |
denotes |
thymine |
T6686 |
11027-11030 |
CC |
denotes |
and |
T6687 |
11031-11039 |
NN |
denotes |
cytosine |
T6688 |
11040-11041 |
-LRB- |
denotes |
( |
T6689 |
11048-11050 |
NN |
denotes |
6B |
T6690 |
11041-11047 |
NN |
denotes |
Figure |
T6691 |
11050-11051 |
-RRB- |
denotes |
) |
T6692 |
11051-11052 |
. |
denotes |
. |
T6693 |
11052-11326 |
sentence |
denotes |
Partial heteroduplex substrates containing the 3′-tail of TC25, TTCC13, TTTCCC8, TTTTCCCC6, TTCC17 were displaced by the Mcm4/6/7 complex to the extent similar to that achieved by TTA17, suggesting that 50% thymine content is sufficient for full activation of Mcm helicase. |
T6694 |
11053-11060 |
JJ |
denotes |
Partial |
T6695 |
11074-11084 |
NNS |
denotes |
substrates |
T6696 |
11061-11073 |
NN |
denotes |
heteroduplex |
T6697 |
11157-11166 |
VBN |
denotes |
displaced |
T6698 |
11085-11095 |
VBG |
denotes |
containing |
T6699 |
11096-11099 |
DT |
denotes |
the |
T6700 |
11103-11107 |
NN |
denotes |
tail |
T6701 |
11100-11101 |
CD |
denotes |
3 |
T6702 |
11101-11102 |
SYM |
denotes |
′ |
T6703 |
11102-11103 |
HYPH |
denotes |
- |
T6704 |
11108-11110 |
IN |
denotes |
of |
T6705 |
11111-11115 |
NN |
denotes |
TC25 |
T6706 |
11145-11151 |
NN |
denotes |
TTCC17 |
T6707 |
11115-11117 |
, |
denotes |
, |
T6708 |
11117-11123 |
NN |
denotes |
TTCC13 |
T6709 |
11123-11125 |
, |
denotes |
, |
T6710 |
11125-11132 |
NN |
denotes |
TTTCCC8 |
T6711 |
11132-11134 |
, |
denotes |
, |
T6712 |
11134-11143 |
NN |
denotes |
TTTTCCCC6 |
T6713 |
11143-11145 |
, |
denotes |
, |
T6714 |
11152-11156 |
VBD |
denotes |
were |
T6715 |
11167-11169 |
IN |
denotes |
by |
T6716 |
11170-11173 |
DT |
denotes |
the |
T6717 |
11183-11190 |
NN |
denotes |
complex |
T6718 |
11174-11178 |
NN |
denotes |
Mcm4 |
T6719 |
11178-11179 |
HYPH |
denotes |
/ |
T6720 |
11179-11180 |
CD |
denotes |
6 |
T6721 |
11180-11181 |
HYPH |
denotes |
/ |
T6722 |
11181-11182 |
CD |
denotes |
7 |
T6723 |
11191-11193 |
IN |
denotes |
to |
T6724 |
11194-11197 |
DT |
denotes |
the |
T6725 |
11198-11204 |
NN |
denotes |
extent |
T6726 |
11205-11212 |
JJ |
denotes |
similar |
T6727 |
11213-11215 |
IN |
denotes |
to |
T6728 |
11216-11220 |
DT |
denotes |
that |
T6729 |
11221-11229 |
VBN |
denotes |
achieved |
T6730 |
11230-11232 |
IN |
denotes |
by |
T6731 |
11233-11238 |
NN |
denotes |
TTA17 |
T6732 |
11238-11240 |
, |
denotes |
, |
T6733 |
11240-11250 |
VBG |
denotes |
suggesting |
T6734 |
11251-11255 |
IN |
denotes |
that |
T6735 |
11276-11278 |
VBZ |
denotes |
is |
T6736 |
11256-11258 |
CD |
denotes |
50 |
T6737 |
11258-11259 |
NN |
denotes |
% |
T6738 |
11268-11275 |
NN |
denotes |
content |
T6739 |
11260-11267 |
NN |
denotes |
thymine |
T6740 |
11279-11289 |
JJ |
denotes |
sufficient |
T6741 |
11290-11293 |
IN |
denotes |
for |
T6742 |
11294-11298 |
JJ |
denotes |
full |
T6743 |
11299-11309 |
NN |
denotes |
activation |
T6744 |
11310-11312 |
IN |
denotes |
of |
T6745 |
11313-11316 |
NN |
denotes |
Mcm |
T6746 |
11317-11325 |
NN |
denotes |
helicase |
T6747 |
11325-11326 |
. |
denotes |
. |
T6748 |
11326-11468 |
sentence |
denotes |
TTCC13 and TTCC17 were displaced to a similar extent, consistent with the earlier result that a 40 nt tail is sufficient for activation (13). |
T6749 |
11327-11333 |
NN |
denotes |
TTCC13 |
T6750 |
11350-11359 |
VBN |
denotes |
displaced |
T6751 |
11334-11337 |
CC |
denotes |
and |
T6752 |
11338-11344 |
NN |
denotes |
TTCC17 |
T6753 |
11345-11349 |
VBD |
denotes |
were |
T6754 |
11360-11362 |
IN |
denotes |
to |
T6755 |
11363-11364 |
DT |
denotes |
a |
T6756 |
11373-11379 |
NN |
denotes |
extent |
T6757 |
11365-11372 |
JJ |
denotes |
similar |
T6758 |
11379-11381 |
, |
denotes |
, |
T6759 |
11381-11391 |
JJ |
denotes |
consistent |
T6760 |
11392-11396 |
IN |
denotes |
with |
T6761 |
11397-11400 |
DT |
denotes |
the |
T6762 |
11409-11415 |
NN |
denotes |
result |
T6763 |
11401-11408 |
JJR |
denotes |
earlier |
T6764 |
11416-11420 |
IN |
denotes |
that |
T6765 |
11434-11436 |
VBZ |
denotes |
is |
T6766 |
11421-11422 |
DT |
denotes |
a |
T6767 |
11429-11433 |
NN |
denotes |
tail |
T6768 |
11423-11425 |
CD |
denotes |
40 |
T6769 |
11426-11428 |
NN |
denotes |
nt |
T6770 |
11437-11447 |
JJ |
denotes |
sufficient |
T6771 |
11448-11451 |
IN |
denotes |
for |
T6772 |
11452-11462 |
NN |
denotes |
activation |
T6773 |
11463-11464 |
-LRB- |
denotes |
( |
T6774 |
11464-11466 |
CD |
denotes |
13 |
T6775 |
11466-11467 |
-RRB- |
denotes |
) |
T6776 |
11467-11468 |
. |
denotes |
. |
T6777 |
11468-11630 |
sentence |
denotes |
However, the efficiency of the displacement significantly decreased as the thymine content of the 3′-tail dropped to 33%, as in TAA17 or TCC17 (Figure 6B and C). |
T6778 |
11469-11476 |
RB |
denotes |
However |
T6779 |
11527-11536 |
VBD |
denotes |
decreased |
T6780 |
11476-11478 |
, |
denotes |
, |
T6781 |
11478-11481 |
DT |
denotes |
the |
T6782 |
11482-11492 |
NN |
denotes |
efficiency |
T6783 |
11493-11495 |
IN |
denotes |
of |
T6784 |
11496-11499 |
DT |
denotes |
the |
T6785 |
11500-11512 |
NN |
denotes |
displacement |
T6786 |
11513-11526 |
RB |
denotes |
significantly |
T6787 |
11537-11539 |
IN |
denotes |
as |
T6788 |
11575-11582 |
VBD |
denotes |
dropped |
T6789 |
11540-11543 |
DT |
denotes |
the |
T6790 |
11552-11559 |
NN |
denotes |
content |
T6791 |
11544-11551 |
NN |
denotes |
thymine |
T6792 |
11560-11562 |
IN |
denotes |
of |
T6793 |
11563-11566 |
DT |
denotes |
the |
T6794 |
11570-11574 |
NN |
denotes |
tail |
T6795 |
11567-11568 |
CD |
denotes |
3 |
T6796 |
11568-11569 |
SYM |
denotes |
′ |
T6797 |
11569-11570 |
HYPH |
denotes |
- |
T6798 |
11583-11585 |
IN |
denotes |
to |
T6799 |
11586-11588 |
CD |
denotes |
33 |
T6800 |
11588-11589 |
NN |
denotes |
% |
T6801 |
11589-11591 |
, |
denotes |
, |
T6802 |
11591-11593 |
IN |
denotes |
as |
T6803 |
11594-11596 |
IN |
denotes |
in |
T6804 |
11597-11602 |
NN |
denotes |
TAA17 |
T6805 |
11603-11605 |
CC |
denotes |
or |
T6806 |
11606-11611 |
NN |
denotes |
TCC17 |
T6807 |
11612-11613 |
-LRB- |
denotes |
( |
T6808 |
11620-11622 |
NN |
denotes |
6B |
T6809 |
11613-11619 |
NN |
denotes |
Figure |
T6810 |
11623-11626 |
CC |
denotes |
and |
T6811 |
11627-11628 |
NN |
denotes |
C |
T6812 |
11628-11629 |
-RRB- |
denotes |
) |
T6813 |
11629-11630 |
. |
denotes |
. |
T6814 |
11630-11745 |
sentence |
denotes |
Thus, the minimal thymine content required for activation of the Mcm helicase may be somewhere between 33 and 50%. |
T6815 |
11631-11635 |
RB |
denotes |
Thus |
T6816 |
11713-11715 |
VB |
denotes |
be |
T6817 |
11635-11637 |
, |
denotes |
, |
T6818 |
11637-11640 |
DT |
denotes |
the |
T6819 |
11657-11664 |
NN |
denotes |
content |
T6820 |
11641-11648 |
JJ |
denotes |
minimal |
T6821 |
11649-11656 |
NN |
denotes |
thymine |
T6822 |
11665-11673 |
VBN |
denotes |
required |
T6823 |
11674-11677 |
IN |
denotes |
for |
T6824 |
11678-11688 |
NN |
denotes |
activation |
T6825 |
11689-11691 |
IN |
denotes |
of |
T6826 |
11692-11695 |
DT |
denotes |
the |
T6827 |
11700-11708 |
NN |
denotes |
helicase |
T6828 |
11696-11699 |
NN |
denotes |
Mcm |
T6829 |
11709-11712 |
MD |
denotes |
may |
T6830 |
11716-11725 |
RB |
denotes |
somewhere |
T6831 |
11726-11733 |
IN |
denotes |
between |
T6832 |
11734-11736 |
CD |
denotes |
33 |
T6833 |
11743-11744 |
NN |
denotes |
% |
T6834 |
11737-11740 |
CC |
denotes |
and |
T6835 |
11741-11743 |
CD |
denotes |
50 |
T6836 |
11744-11745 |
. |
denotes |
. |
T7008 |
11747-11750 |
NN |
denotes |
DUE |
T7009 |
11751-11760 |
NNS |
denotes |
sequences |
T7010 |
11783-11791 |
VBP |
denotes |
activate |
T7011 |
11761-11765 |
IN |
denotes |
from |
T7012 |
11766-11769 |
DT |
denotes |
the |
T7013 |
11776-11782 |
NN |
denotes |
origin |
T7014 |
11770-11771 |
NN |
denotes |
c |
T7015 |
11772-11775 |
NN |
denotes |
myc |
T7016 |
11771-11772 |
HYPH |
denotes |
- |
T7017 |
11792-11795 |
NN |
denotes |
Mcm |
T7018 |
11796-11804 |
NN |
denotes |
helicase |
T7019 |
11804-12104 |
sentence |
denotes |
Our previous studies have shown that the sequences containing periodic (dT)n tracts derived from the human lamin B2 origin (48% thymine content) can serve as an efficient activator for the Mcm helicase on a bubble, and replacement of thymines with guanines abolished the helicase activation (13,28). |
T7020 |
11805-11808 |
PRP$ |
denotes |
Our |
T7021 |
11818-11825 |
NNS |
denotes |
studies |
T7022 |
11809-11817 |
JJ |
denotes |
previous |
T7023 |
11831-11836 |
VBN |
denotes |
shown |
T7024 |
11826-11830 |
VBP |
denotes |
have |
T7025 |
11837-11841 |
IN |
denotes |
that |
T7026 |
11954-11959 |
VB |
denotes |
serve |
T7027 |
11842-11845 |
DT |
denotes |
the |
T7028 |
11846-11855 |
NNS |
denotes |
sequences |
T7029 |
11856-11866 |
VBG |
denotes |
containing |
T7030 |
11867-11875 |
JJ |
denotes |
periodic |
T7031 |
11882-11888 |
NNS |
denotes |
tracts |
T7032 |
11876-11877 |
-LRB- |
denotes |
( |
T7033 |
11880-11881 |
NN |
denotes |
n |
T7034 |
11877-11879 |
NN |
denotes |
dT |
T7035 |
11879-11880 |
-RRB- |
denotes |
) |
T7036 |
11889-11896 |
VBN |
denotes |
derived |
T7037 |
11897-11901 |
IN |
denotes |
from |
T7038 |
11902-11905 |
DT |
denotes |
the |
T7039 |
11921-11927 |
NN |
denotes |
origin |
T7040 |
11906-11911 |
JJ |
denotes |
human |
T7041 |
11912-11917 |
NN |
denotes |
lamin |
T7042 |
11918-11920 |
NN |
denotes |
B2 |
T7043 |
11928-11929 |
-LRB- |
denotes |
( |
T7044 |
11941-11948 |
NN |
denotes |
content |
T7045 |
11929-11931 |
CD |
denotes |
48 |
T7046 |
11931-11932 |
NN |
denotes |
% |
T7047 |
11933-11940 |
NN |
denotes |
thymine |
T7048 |
11948-11949 |
-RRB- |
denotes |
) |
T7049 |
11950-11953 |
MD |
denotes |
can |
T7050 |
11960-11962 |
IN |
denotes |
as |
T7051 |
11963-11965 |
DT |
denotes |
an |
T7052 |
11976-11985 |
NN |
denotes |
activator |
T7053 |
11966-11975 |
JJ |
denotes |
efficient |
T7054 |
11986-11989 |
IN |
denotes |
for |
T7055 |
11990-11993 |
DT |
denotes |
the |
T7056 |
11998-12006 |
NN |
denotes |
helicase |
T7057 |
11994-11997 |
NN |
denotes |
Mcm |
T7058 |
12007-12009 |
IN |
denotes |
on |
T7059 |
12010-12011 |
DT |
denotes |
a |
T7060 |
12012-12018 |
NN |
denotes |
bubble |
T7061 |
12018-12020 |
, |
denotes |
, |
T7062 |
12020-12023 |
CC |
denotes |
and |
T7063 |
12024-12035 |
NN |
denotes |
replacement |
T7064 |
12062-12071 |
VBD |
denotes |
abolished |
T7065 |
12036-12038 |
IN |
denotes |
of |
T7066 |
12039-12047 |
NNS |
denotes |
thymines |
T7067 |
12048-12052 |
IN |
denotes |
with |
T7068 |
12053-12061 |
NNS |
denotes |
guanines |
T7069 |
12072-12075 |
DT |
denotes |
the |
T7070 |
12085-12095 |
NN |
denotes |
activation |
T7071 |
12076-12084 |
NN |
denotes |
helicase |
T7072 |
12096-12097 |
-LRB- |
denotes |
( |
T7073 |
12100-12102 |
CD |
denotes |
28 |
T7074 |
12097-12099 |
CD |
denotes |
13 |
T7075 |
12099-12100 |
, |
denotes |
, |
T7076 |
12102-12103 |
-RRB- |
denotes |
) |
T7077 |
12103-12104 |
. |
denotes |
. |
T7078 |
12104-12462 |
sentence |
denotes |
In order to examine other natural replication origins with different thymine contents for the ability to activate Mcm helicase on a bubble substrate, we constructed new bubble substrates, Bub82/c-myc, containing sequences derived from the DUE (DNA unwinding element) region of the human c-myc origin which is essential for c-myc replicator activity (29,30). |
T7079 |
12105-12107 |
IN |
denotes |
In |
T7080 |
12258-12269 |
VBD |
denotes |
constructed |
T7081 |
12108-12113 |
NN |
denotes |
order |
T7082 |
12114-12116 |
TO |
denotes |
to |
T7083 |
12117-12124 |
VB |
denotes |
examine |
T7084 |
12125-12130 |
JJ |
denotes |
other |
T7085 |
12151-12158 |
NNS |
denotes |
origins |
T7086 |
12131-12138 |
JJ |
denotes |
natural |
T7087 |
12139-12150 |
NN |
denotes |
replication |
T7088 |
12159-12163 |
IN |
denotes |
with |
T7089 |
12164-12173 |
JJ |
denotes |
different |
T7090 |
12182-12190 |
NNS |
denotes |
contents |
T7091 |
12174-12181 |
NN |
denotes |
thymine |
T7092 |
12191-12194 |
IN |
denotes |
for |
T7093 |
12195-12198 |
DT |
denotes |
the |
T7094 |
12199-12206 |
NN |
denotes |
ability |
T7095 |
12207-12209 |
TO |
denotes |
to |
T7096 |
12210-12218 |
VB |
denotes |
activate |
T7097 |
12219-12222 |
NN |
denotes |
Mcm |
T7098 |
12223-12231 |
NN |
denotes |
helicase |
T7099 |
12232-12234 |
IN |
denotes |
on |
T7100 |
12235-12236 |
DT |
denotes |
a |
T7101 |
12244-12253 |
NN |
denotes |
substrate |
T7102 |
12237-12243 |
NN |
denotes |
bubble |
T7103 |
12253-12255 |
, |
denotes |
, |
T7104 |
12255-12257 |
PRP |
denotes |
we |
T7105 |
12270-12273 |
JJ |
denotes |
new |
T7106 |
12281-12291 |
NNS |
denotes |
substrates |
T7107 |
12274-12280 |
NN |
denotes |
bubble |
T7108 |
12291-12293 |
, |
denotes |
, |
T7109 |
12293-12298 |
NN |
denotes |
Bub82 |
T7110 |
12301-12304 |
NN |
denotes |
myc |
T7111 |
12298-12299 |
HYPH |
denotes |
/ |
T7112 |
12299-12300 |
NN |
denotes |
c |
T7113 |
12300-12301 |
HYPH |
denotes |
- |
T7114 |
12304-12306 |
, |
denotes |
, |
T7115 |
12306-12316 |
VBG |
denotes |
containing |
T7116 |
12317-12326 |
NNS |
denotes |
sequences |
T7117 |
12327-12334 |
VBN |
denotes |
derived |
T7118 |
12335-12339 |
IN |
denotes |
from |
T7119 |
12340-12343 |
DT |
denotes |
the |
T7120 |
12372-12378 |
NN |
denotes |
region |
T7121 |
12344-12347 |
NN |
denotes |
DUE |
T7122 |
12348-12349 |
-LRB- |
denotes |
( |
T7123 |
12349-12352 |
NN |
denotes |
DNA |
T7124 |
12363-12370 |
NN |
denotes |
element |
T7125 |
12353-12362 |
NN |
denotes |
unwinding |
T7126 |
12370-12371 |
-RRB- |
denotes |
) |
T7127 |
12379-12381 |
IN |
denotes |
of |
T7128 |
12382-12385 |
DT |
denotes |
the |
T7129 |
12398-12404 |
NN |
denotes |
origin |
T7130 |
12386-12391 |
JJ |
denotes |
human |
T7131 |
12392-12393 |
NN |
denotes |
c |
T7132 |
12394-12397 |
NN |
denotes |
myc |
T7133 |
12393-12394 |
HYPH |
denotes |
- |
T7134 |
12405-12410 |
WDT |
denotes |
which |
T7135 |
12411-12413 |
VBZ |
denotes |
is |
T7136 |
12414-12423 |
JJ |
denotes |
essential |
T7137 |
12424-12427 |
IN |
denotes |
for |
T7138 |
12428-12429 |
NN |
denotes |
c |
T7139 |
12430-12433 |
NN |
denotes |
myc |
T7140 |
12429-12430 |
HYPH |
denotes |
- |
T7141 |
12445-12453 |
NN |
denotes |
activity |
T7142 |
12434-12444 |
NN |
denotes |
replicator |
T7143 |
12454-12455 |
-LRB- |
denotes |
( |
T7144 |
12458-12460 |
CD |
denotes |
30 |
T7145 |
12455-12457 |
CD |
denotes |
29 |
T7146 |
12457-12458 |
, |
denotes |
, |
T7147 |
12460-12461 |
-RRB- |
denotes |
) |
T7148 |
12461-12462 |
. |
denotes |
. |
T7149 |
12462-12584 |
sentence |
denotes |
The unpaired segment in Bub82/c-myc/DUE contains one strand of DUE and that in Bub82/c-myc/DUE-C contains another strand. |
T7150 |
12463-12466 |
DT |
denotes |
The |
T7151 |
12476-12483 |
NN |
denotes |
segment |
T7152 |
12467-12475 |
JJ |
denotes |
unpaired |
T7153 |
12503-12511 |
VBZ |
denotes |
contains |
T7154 |
12484-12486 |
IN |
denotes |
in |
T7155 |
12487-12492 |
NN |
denotes |
Bub82 |
T7156 |
12499-12502 |
NN |
denotes |
DUE |
T7157 |
12492-12493 |
HYPH |
denotes |
/ |
T7158 |
12493-12494 |
NN |
denotes |
c |
T7159 |
12495-12498 |
NN |
denotes |
myc |
T7160 |
12494-12495 |
HYPH |
denotes |
- |
T7161 |
12498-12499 |
HYPH |
denotes |
/ |
T7162 |
12512-12515 |
CD |
denotes |
one |
T7163 |
12516-12522 |
NN |
denotes |
strand |
T7164 |
12523-12525 |
IN |
denotes |
of |
T7165 |
12526-12529 |
NN |
denotes |
DUE |
T7166 |
12530-12533 |
CC |
denotes |
and |
T7167 |
12534-12538 |
DT |
denotes |
that |
T7168 |
12560-12568 |
VBZ |
denotes |
contains |
T7169 |
12539-12541 |
IN |
denotes |
in |
T7170 |
12542-12547 |
NN |
denotes |
Bub82 |
T7171 |
12558-12559 |
NN |
denotes |
C |
T7172 |
12547-12548 |
HYPH |
denotes |
/ |
T7173 |
12548-12549 |
NN |
denotes |
c |
T7174 |
12550-12553 |
NN |
denotes |
myc |
T7175 |
12549-12550 |
HYPH |
denotes |
- |
T7176 |
12553-12554 |
HYPH |
denotes |
/ |
T7177 |
12554-12557 |
NN |
denotes |
DUE |
T7178 |
12557-12558 |
HYPH |
denotes |
- |
T7179 |
12569-12576 |
DT |
denotes |
another |
T7180 |
12577-12583 |
NN |
denotes |
strand |
T7181 |
12583-12584 |
. |
denotes |
. |
T7182 |
12584-12746 |
sentence |
denotes |
This DUE is believed to coincide with the initially unwound region of the c-myc origin (29), and its deletion substantially reduced the replicator activity (30). |
T7183 |
12585-12589 |
DT |
denotes |
This |
T7184 |
12590-12593 |
NN |
denotes |
DUE |
T7185 |
12597-12605 |
VBN |
denotes |
believed |
T7186 |
12594-12596 |
VBZ |
denotes |
is |
T7187 |
12606-12608 |
TO |
denotes |
to |
T7188 |
12609-12617 |
VB |
denotes |
coincide |
T7189 |
12618-12622 |
IN |
denotes |
with |
T7190 |
12623-12626 |
DT |
denotes |
the |
T7191 |
12645-12651 |
NN |
denotes |
region |
T7192 |
12627-12636 |
RB |
denotes |
initially |
T7193 |
12637-12644 |
JJ |
denotes |
unwound |
T7194 |
12652-12654 |
IN |
denotes |
of |
T7195 |
12655-12658 |
DT |
denotes |
the |
T7196 |
12665-12671 |
NN |
denotes |
origin |
T7197 |
12659-12660 |
NN |
denotes |
c |
T7198 |
12661-12664 |
NN |
denotes |
myc |
T7199 |
12660-12661 |
HYPH |
denotes |
- |
T7200 |
12672-12673 |
-LRB- |
denotes |
( |
T7201 |
12673-12675 |
CD |
denotes |
29 |
T7202 |
12675-12676 |
-RRB- |
denotes |
) |
T7203 |
12676-12678 |
, |
denotes |
, |
T7204 |
12678-12681 |
CC |
denotes |
and |
T7205 |
12682-12685 |
PRP$ |
denotes |
its |
T7206 |
12686-12694 |
NN |
denotes |
deletion |
T7207 |
12709-12716 |
VBD |
denotes |
reduced |
T7208 |
12695-12708 |
RB |
denotes |
substantially |
T7209 |
12717-12720 |
DT |
denotes |
the |
T7210 |
12732-12740 |
NN |
denotes |
activity |
T7211 |
12721-12731 |
NN |
denotes |
replicator |
T7212 |
12741-12742 |
-LRB- |
denotes |
( |
T7213 |
12742-12744 |
CD |
denotes |
30 |
T7214 |
12744-12745 |
-RRB- |
denotes |
) |
T7215 |
12745-12746 |
. |
denotes |
. |
T7216 |
12746-12992 |
sentence |
denotes |
Mcm4/6/7 unwound Bub82/lamin B2 (thymine 48%), Bub82/c-myc/DUE (37%) and Bub82/c-myc/DUE-C (39%) with similar efficiency (Figure 7A), indicating that the sequences from the c-myc origin also can serve as efficient activators of the Mcm helicase. |
T7217 |
12747-12751 |
NN |
denotes |
Mcm4 |
T7218 |
12756-12763 |
VBN |
denotes |
unwound |
T7219 |
12751-12752 |
HYPH |
denotes |
/ |
T7220 |
12752-12753 |
CD |
denotes |
6 |
T7221 |
12753-12754 |
HYPH |
denotes |
/ |
T7222 |
12754-12755 |
CD |
denotes |
7 |
T7223 |
12764-12769 |
NN |
denotes |
Bub82 |
T7224 |
12776-12778 |
NN |
denotes |
B2 |
T7225 |
12769-12770 |
HYPH |
denotes |
/ |
T7226 |
12770-12775 |
NN |
denotes |
lamin |
T7227 |
12779-12780 |
-LRB- |
denotes |
( |
T7228 |
12790-12791 |
NN |
denotes |
% |
T7229 |
12780-12787 |
NN |
denotes |
thymine |
T7230 |
12788-12790 |
CD |
denotes |
48 |
T7231 |
12791-12792 |
-RRB- |
denotes |
) |
T7232 |
12792-12794 |
, |
denotes |
, |
T7233 |
12794-12799 |
NN |
denotes |
Bub82 |
T7234 |
12806-12809 |
NN |
denotes |
DUE |
T7235 |
12799-12800 |
HYPH |
denotes |
/ |
T7236 |
12800-12801 |
NN |
denotes |
c |
T7237 |
12802-12805 |
NN |
denotes |
myc |
T7238 |
12801-12802 |
HYPH |
denotes |
- |
T7239 |
12805-12806 |
HYPH |
denotes |
/ |
T7240 |
12810-12811 |
-LRB- |
denotes |
( |
T7241 |
12813-12814 |
NN |
denotes |
% |
T7242 |
12811-12813 |
CD |
denotes |
37 |
T7243 |
12814-12815 |
-RRB- |
denotes |
) |
T7244 |
12816-12819 |
CC |
denotes |
and |
T7245 |
12820-12825 |
NN |
denotes |
Bub82 |
T7246 |
12836-12837 |
NN |
denotes |
C |
T7247 |
12825-12826 |
HYPH |
denotes |
/ |
T7248 |
12826-12827 |
NN |
denotes |
c |
T7249 |
12828-12831 |
NN |
denotes |
myc |
T7250 |
12827-12828 |
HYPH |
denotes |
- |
T7251 |
12831-12832 |
HYPH |
denotes |
/ |
T7252 |
12832-12835 |
NN |
denotes |
DUE |
T7253 |
12835-12836 |
HYPH |
denotes |
- |
T7254 |
12838-12839 |
-LRB- |
denotes |
( |
T7255 |
12841-12842 |
NN |
denotes |
% |
T7256 |
12839-12841 |
CD |
denotes |
39 |
T7257 |
12842-12843 |
-RRB- |
denotes |
) |
T7258 |
12844-12848 |
IN |
denotes |
with |
T7259 |
12849-12856 |
JJ |
denotes |
similar |
T7260 |
12857-12867 |
NN |
denotes |
efficiency |
T7261 |
12868-12869 |
-LRB- |
denotes |
( |
T7262 |
12876-12878 |
NN |
denotes |
7A |
T7263 |
12869-12875 |
NN |
denotes |
Figure |
T7264 |
12878-12879 |
-RRB- |
denotes |
) |
T7265 |
12879-12881 |
, |
denotes |
, |
T7266 |
12881-12891 |
VBG |
denotes |
indicating |
T7267 |
12892-12896 |
IN |
denotes |
that |
T7268 |
12942-12947 |
VB |
denotes |
serve |
T7269 |
12897-12900 |
DT |
denotes |
the |
T7270 |
12901-12910 |
NNS |
denotes |
sequences |
T7271 |
12911-12915 |
IN |
denotes |
from |
T7272 |
12916-12919 |
DT |
denotes |
the |
T7273 |
12926-12932 |
NN |
denotes |
origin |
T7274 |
12920-12921 |
NN |
denotes |
c |
T7275 |
12922-12925 |
NN |
denotes |
myc |
T7276 |
12921-12922 |
HYPH |
denotes |
- |
T7277 |
12933-12937 |
RB |
denotes |
also |
T7278 |
12938-12941 |
MD |
denotes |
can |
T7279 |
12948-12950 |
IN |
denotes |
as |
T7280 |
12951-12960 |
JJ |
denotes |
efficient |
T7281 |
12961-12971 |
NNS |
denotes |
activators |
T7282 |
12972-12974 |
IN |
denotes |
of |
T7283 |
12975-12978 |
DT |
denotes |
the |
T7284 |
12983-12991 |
NN |
denotes |
helicase |
T7285 |
12979-12982 |
NN |
denotes |
Mcm |
T7286 |
12991-12992 |
. |
denotes |
. |
T7287 |
12992-13258 |
sentence |
denotes |
This result also indicates that sequences with 37% thymine content can activate Mcm4/6/7 to displace 24 nt duplex on both sides in a bubble substrate, suggesting that the not only thymine content but also the sequence context may affect the Mcm helicase activation. |
T7288 |
12993-12997 |
DT |
denotes |
This |
T7289 |
12998-13004 |
NN |
denotes |
result |
T7290 |
13010-13019 |
VBZ |
denotes |
indicates |
T7291 |
13005-13009 |
RB |
denotes |
also |
T7292 |
13020-13024 |
IN |
denotes |
that |
T7293 |
13064-13072 |
VB |
denotes |
activate |
T7294 |
13025-13034 |
NNS |
denotes |
sequences |
T7295 |
13035-13039 |
IN |
denotes |
with |
T7296 |
13040-13042 |
CD |
denotes |
37 |
T7297 |
13042-13043 |
NN |
denotes |
% |
T7298 |
13052-13059 |
NN |
denotes |
content |
T7299 |
13044-13051 |
NN |
denotes |
thymine |
T7300 |
13060-13063 |
MD |
denotes |
can |
T7301 |
13073-13077 |
NN |
denotes |
Mcm4 |
T7302 |
13077-13078 |
HYPH |
denotes |
/ |
T7303 |
13078-13079 |
CD |
denotes |
6 |
T7304 |
13079-13080 |
HYPH |
denotes |
/ |
T7305 |
13080-13081 |
CD |
denotes |
7 |
T7306 |
13082-13084 |
TO |
denotes |
to |
T7307 |
13085-13093 |
VB |
denotes |
displace |
T7308 |
13094-13096 |
CD |
denotes |
24 |
T7309 |
13097-13099 |
NN |
denotes |
nt |
T7310 |
13100-13106 |
NN |
denotes |
duplex |
T7311 |
13107-13109 |
IN |
denotes |
on |
T7312 |
13110-13114 |
DT |
denotes |
both |
T7313 |
13115-13120 |
NNS |
denotes |
sides |
T7314 |
13121-13123 |
IN |
denotes |
in |
T7315 |
13124-13125 |
DT |
denotes |
a |
T7316 |
13133-13142 |
NN |
denotes |
substrate |
T7317 |
13126-13132 |
NN |
denotes |
bubble |
T7318 |
13142-13144 |
, |
denotes |
, |
T7319 |
13144-13154 |
VBG |
denotes |
suggesting |
T7320 |
13155-13159 |
IN |
denotes |
that |
T7321 |
13223-13229 |
VB |
denotes |
affect |
T7322 |
13160-13163 |
DT |
denotes |
the |
T7323 |
13181-13188 |
NN |
denotes |
content |
T7324 |
13164-13167 |
RB |
denotes |
not |
T7325 |
13168-13172 |
RB |
denotes |
only |
T7326 |
13173-13180 |
NN |
denotes |
thymine |
T7327 |
13189-13192 |
CC |
denotes |
but |
T7328 |
13193-13197 |
RB |
denotes |
also |
T7329 |
13198-13201 |
DT |
denotes |
the |
T7330 |
13211-13218 |
NN |
denotes |
context |
T7331 |
13202-13210 |
NN |
denotes |
sequence |
T7332 |
13219-13222 |
MD |
denotes |
may |
T7333 |
13230-13233 |
DT |
denotes |
the |
T7334 |
13247-13257 |
NN |
denotes |
activation |
T7335 |
13234-13237 |
NN |
denotes |
Mcm |
T7336 |
13238-13246 |
NN |
denotes |
helicase |
T7337 |
13257-13258 |
. |
denotes |
. |
T7338 |
13258-13446 |
sentence |
denotes |
In gel shift assays, MCM4/6/7 bound to all the three bubbles, although the affinity to Bub82/c-myc/DUE and to Bub82/c-myc/DUE-C is slightly lower than that to Bub-82/lamin B2 (Figure 7B). |
T7339 |
13259-13261 |
IN |
denotes |
In |
T7340 |
13289-13294 |
VBD |
denotes |
bound |
T7341 |
13262-13265 |
NN |
denotes |
gel |
T7342 |
13266-13271 |
NN |
denotes |
shift |
T7343 |
13272-13278 |
NNS |
denotes |
assays |
T7344 |
13278-13280 |
, |
denotes |
, |
T7345 |
13280-13284 |
NN |
denotes |
MCM4 |
T7346 |
13284-13285 |
HYPH |
denotes |
/ |
T7347 |
13285-13286 |
CD |
denotes |
6 |
T7348 |
13286-13287 |
HYPH |
denotes |
/ |
T7349 |
13287-13288 |
CD |
denotes |
7 |
T7350 |
13295-13297 |
IN |
denotes |
to |
T7351 |
13298-13301 |
PDT |
denotes |
all |
T7352 |
13312-13319 |
NNS |
denotes |
bubbles |
T7353 |
13302-13305 |
DT |
denotes |
the |
T7354 |
13306-13311 |
CD |
denotes |
three |
T7355 |
13319-13321 |
, |
denotes |
, |
T7356 |
13321-13329 |
IN |
denotes |
although |
T7357 |
13387-13389 |
VBZ |
denotes |
is |
T7358 |
13330-13333 |
DT |
denotes |
the |
T7359 |
13334-13342 |
NN |
denotes |
affinity |
T7360 |
13343-13345 |
IN |
denotes |
to |
T7361 |
13346-13351 |
NN |
denotes |
Bub82 |
T7362 |
13358-13361 |
NN |
denotes |
DUE |
T7363 |
13351-13352 |
HYPH |
denotes |
/ |
T7364 |
13352-13353 |
NN |
denotes |
c |
T7365 |
13354-13357 |
NN |
denotes |
myc |
T7366 |
13353-13354 |
HYPH |
denotes |
- |
T7367 |
13357-13358 |
HYPH |
denotes |
/ |
T7368 |
13362-13365 |
CC |
denotes |
and |
T7369 |
13366-13368 |
IN |
denotes |
to |
T7370 |
13369-13374 |
NN |
denotes |
Bub82 |
T7371 |
13385-13386 |
NN |
denotes |
C |
T7372 |
13374-13375 |
HYPH |
denotes |
/ |
T7373 |
13375-13376 |
NN |
denotes |
c |
T7374 |
13377-13380 |
NN |
denotes |
myc |
T7375 |
13376-13377 |
HYPH |
denotes |
- |
T7376 |
13380-13381 |
HYPH |
denotes |
/ |
T7377 |
13381-13384 |
NN |
denotes |
DUE |
T7378 |
13384-13385 |
HYPH |
denotes |
- |
T7379 |
13390-13398 |
RB |
denotes |
slightly |
T7380 |
13399-13404 |
JJR |
denotes |
lower |
T7381 |
13405-13409 |
IN |
denotes |
than |
T7382 |
13410-13414 |
DT |
denotes |
that |
T7383 |
13415-13417 |
IN |
denotes |
to |
T7384 |
13418-13421 |
NN |
denotes |
Bub |
T7385 |
13431-13433 |
NN |
denotes |
B2 |
T7386 |
13421-13422 |
HYPH |
denotes |
- |
T7387 |
13422-13424 |
CD |
denotes |
82 |
T7388 |
13424-13425 |
HYPH |
denotes |
/ |
T7389 |
13425-13430 |
NN |
denotes |
lamin |
T7390 |
13434-13435 |
-LRB- |
denotes |
( |
T7391 |
13442-13444 |
NN |
denotes |
7B |
T7392 |
13435-13441 |
NN |
denotes |
Figure |
T7393 |
13444-13445 |
-RRB- |
denotes |
) |
T7394 |
13445-13446 |
. |
denotes |
. |
T7395 |
13446-13539 |
sentence |
denotes |
Therefore, helicase and DNA binding activities do not necessarily correlate with each other. |
T7396 |
13447-13456 |
RB |
denotes |
Therefore |
T7397 |
13513-13522 |
VB |
denotes |
correlate |
T7398 |
13456-13458 |
, |
denotes |
, |
T7399 |
13458-13466 |
NN |
denotes |
helicase |
T7400 |
13483-13493 |
NNS |
denotes |
activities |
T7401 |
13467-13470 |
CC |
denotes |
and |
T7402 |
13471-13474 |
NN |
denotes |
DNA |
T7403 |
13475-13482 |
NN |
denotes |
binding |
T7404 |
13494-13496 |
VBP |
denotes |
do |
T7405 |
13497-13500 |
RB |
denotes |
not |
T7406 |
13501-13512 |
RB |
denotes |
necessarily |
T7407 |
13523-13527 |
IN |
denotes |
with |
T7408 |
13528-13532 |
DT |
denotes |
each |
T7409 |
13533-13538 |
JJ |
denotes |
other |
T7410 |
13538-13539 |
. |
denotes |
. |
T7411 |
13539-13678 |
sentence |
denotes |
This was also indicated by our previous results that guanine and cytosine stretches can bind to Mcm but cannot activate the helicase (13). |
T7412 |
13540-13544 |
DT |
denotes |
This |
T7413 |
13554-13563 |
VBN |
denotes |
indicated |
T7414 |
13545-13548 |
VBD |
denotes |
was |
T7415 |
13549-13553 |
RB |
denotes |
also |
T7416 |
13564-13566 |
IN |
denotes |
by |
T7417 |
13567-13570 |
PRP$ |
denotes |
our |
T7418 |
13580-13587 |
NNS |
denotes |
results |
T7419 |
13571-13579 |
JJ |
denotes |
previous |
T7420 |
13588-13592 |
IN |
denotes |
that |
T7421 |
13628-13632 |
VB |
denotes |
bind |
T7422 |
13593-13600 |
NN |
denotes |
guanine |
T7423 |
13614-13623 |
NNS |
denotes |
stretches |
T7424 |
13601-13604 |
CC |
denotes |
and |
T7425 |
13605-13613 |
NN |
denotes |
cytosine |
T7426 |
13624-13627 |
MD |
denotes |
can |
T7427 |
13633-13635 |
IN |
denotes |
to |
T7428 |
13636-13639 |
NN |
denotes |
Mcm |
T7429 |
13640-13643 |
CC |
denotes |
but |
T7430 |
13644-13647 |
MD |
denotes |
can |
T7431 |
13651-13659 |
VB |
denotes |
activate |
T7432 |
13647-13650 |
RB |
denotes |
not |
T7433 |
13660-13663 |
DT |
denotes |
the |
T7434 |
13664-13672 |
NN |
denotes |
helicase |
T7435 |
13673-13674 |
-LRB- |
denotes |
( |
T7436 |
13674-13676 |
CD |
denotes |
13 |
T7437 |
13676-13677 |
-RRB- |
denotes |
) |
T7438 |
13677-13678 |
. |
denotes |
. |
T7722 |
13680-13683 |
NN |
denotes |
DNA |
T7723 |
13684-13693 |
NN |
denotes |
unwinding |
T7724 |
13709-13718 |
VBN |
denotes |
inhibited |
T7725 |
13694-13696 |
IN |
denotes |
by |
T7726 |
13697-13701 |
NN |
denotes |
Mcm4 |
T7727 |
13701-13702 |
HYPH |
denotes |
/ |
T7728 |
13702-13703 |
CD |
denotes |
6 |
T7729 |
13703-13704 |
HYPH |
denotes |
/ |
T7730 |
13704-13705 |
CD |
denotes |
7 |
T7731 |
13706-13708 |
VBZ |
denotes |
is |
T7732 |
13719-13721 |
IN |
denotes |
by |
T7733 |
13722-13725 |
DT |
denotes |
the |
T7734 |
13734-13743 |
NNS |
denotes |
sequences |
T7735 |
13726-13728 |
NN |
denotes |
GC |
T7736 |
13729-13733 |
JJ |
denotes |
rich |
T7737 |
13728-13729 |
HYPH |
denotes |
- |
T7738 |
13744-13746 |
IN |
denotes |
on |
T7739 |
13747-13750 |
DT |
denotes |
the |
T7740 |
13758-13765 |
NN |
denotes |
segment |
T7741 |
13751-13757 |
NN |
denotes |
duplex |
T7742 |
13765-13892 |
sentence |
denotes |
Our results indicate that thymine-rich single-stranded DNA is required for initial loading and activation of the Mcm helicase. |
T7743 |
13766-13769 |
PRP$ |
denotes |
Our |
T7744 |
13770-13777 |
NNS |
denotes |
results |
T7745 |
13778-13786 |
VBP |
denotes |
indicate |
T7746 |
13787-13791 |
IN |
denotes |
that |
T7747 |
13828-13836 |
VBN |
denotes |
required |
T7748 |
13792-13799 |
NN |
denotes |
thymine |
T7749 |
13800-13804 |
JJ |
denotes |
rich |
T7750 |
13799-13800 |
HYPH |
denotes |
- |
T7751 |
13821-13824 |
NN |
denotes |
DNA |
T7752 |
13805-13811 |
JJ |
denotes |
single |
T7753 |
13812-13820 |
VBN |
denotes |
stranded |
T7754 |
13811-13812 |
HYPH |
denotes |
- |
T7755 |
13825-13827 |
VBZ |
denotes |
is |
T7756 |
13837-13840 |
IN |
denotes |
for |
T7757 |
13841-13848 |
JJ |
denotes |
initial |
T7758 |
13849-13856 |
NN |
denotes |
loading |
T7759 |
13857-13860 |
CC |
denotes |
and |
T7760 |
13861-13871 |
NN |
denotes |
activation |
T7761 |
13872-13874 |
IN |
denotes |
of |
T7762 |
13875-13878 |
DT |
denotes |
the |
T7763 |
13883-13891 |
NN |
denotes |
helicase |
T7764 |
13879-13882 |
NN |
denotes |
Mcm |
T7765 |
13891-13892 |
. |
denotes |
. |
T7766 |
13892-13996 |
sentence |
denotes |
However, it is not known whether thymine sequences are required for processive unwinding of duplex DNA. |
T7767 |
13893-13900 |
RB |
denotes |
However |
T7768 |
13912-13917 |
VBN |
denotes |
known |
T7769 |
13900-13902 |
, |
denotes |
, |
T7770 |
13902-13904 |
PRP |
denotes |
it |
T7771 |
13905-13907 |
VBZ |
denotes |
is |
T7772 |
13908-13911 |
RB |
denotes |
not |
T7773 |
13918-13925 |
IN |
denotes |
whether |
T7774 |
13948-13956 |
VBN |
denotes |
required |
T7775 |
13926-13933 |
NN |
denotes |
thymine |
T7776 |
13934-13943 |
NNS |
denotes |
sequences |
T7777 |
13944-13947 |
VBP |
denotes |
are |
T7778 |
13957-13960 |
IN |
denotes |
for |
T7779 |
13961-13971 |
JJ |
denotes |
processive |
T7780 |
13972-13981 |
NN |
denotes |
unwinding |
T7781 |
13982-13984 |
IN |
denotes |
of |
T7782 |
13985-13991 |
NN |
denotes |
duplex |
T7783 |
13992-13995 |
NN |
denotes |
DNA |
T7784 |
13995-13996 |
. |
denotes |
. |
T7785 |
13996-14112 |
sentence |
denotes |
Therefore, we have examined whether the nucleotide composition of the duplex region affects its unwinding activity. |
T7786 |
13997-14006 |
RB |
denotes |
Therefore |
T7787 |
14016-14024 |
VBN |
denotes |
examined |
T7788 |
14006-14008 |
, |
denotes |
, |
T7789 |
14008-14010 |
PRP |
denotes |
we |
T7790 |
14011-14015 |
VBP |
denotes |
have |
T7791 |
14025-14032 |
IN |
denotes |
whether |
T7792 |
14081-14088 |
VBZ |
denotes |
affects |
T7793 |
14033-14036 |
DT |
denotes |
the |
T7794 |
14048-14059 |
NN |
denotes |
composition |
T7795 |
14037-14047 |
NN |
denotes |
nucleotide |
T7796 |
14060-14062 |
IN |
denotes |
of |
T7797 |
14063-14066 |
DT |
denotes |
the |
T7798 |
14074-14080 |
NN |
denotes |
region |
T7799 |
14067-14073 |
NN |
denotes |
duplex |
T7800 |
14089-14092 |
PRP$ |
denotes |
its |
T7801 |
14103-14111 |
NN |
denotes |
activity |
T7802 |
14093-14102 |
NN |
denotes |
unwinding |
T7803 |
14111-14112 |
. |
denotes |
. |
T7804 |
14112-14250 |
sentence |
denotes |
To address this issue, we constructed a series of T-tailed Y-fork structures (T-fork) containing various sequences in the duplex segment. |
T7805 |
14113-14115 |
TO |
denotes |
To |
T7806 |
14116-14123 |
VB |
denotes |
address |
T7807 |
14139-14150 |
VBD |
denotes |
constructed |
T7808 |
14124-14128 |
DT |
denotes |
this |
T7809 |
14129-14134 |
NN |
denotes |
issue |
T7810 |
14134-14136 |
, |
denotes |
, |
T7811 |
14136-14138 |
PRP |
denotes |
we |
T7812 |
14151-14152 |
DT |
denotes |
a |
T7813 |
14153-14159 |
NN |
denotes |
series |
T7814 |
14160-14162 |
IN |
denotes |
of |
T7815 |
14163-14164 |
NN |
denotes |
T |
T7816 |
14165-14171 |
VBN |
denotes |
tailed |
T7817 |
14164-14165 |
HYPH |
denotes |
- |
T7818 |
14179-14189 |
NNS |
denotes |
structures |
T7819 |
14172-14173 |
NN |
denotes |
Y |
T7820 |
14174-14178 |
NN |
denotes |
fork |
T7821 |
14173-14174 |
HYPH |
denotes |
- |
T7822 |
14190-14191 |
-LRB- |
denotes |
( |
T7823 |
14191-14192 |
NN |
denotes |
T |
T7824 |
14193-14197 |
NN |
denotes |
fork |
T7825 |
14192-14193 |
HYPH |
denotes |
- |
T7826 |
14197-14198 |
-RRB- |
denotes |
) |
T7827 |
14199-14209 |
VBG |
denotes |
containing |
T7828 |
14210-14217 |
JJ |
denotes |
various |
T7829 |
14218-14227 |
NNS |
denotes |
sequences |
T7830 |
14228-14230 |
IN |
denotes |
in |
T7831 |
14231-14234 |
DT |
denotes |
the |
T7832 |
14242-14249 |
NN |
denotes |
segment |
T7833 |
14235-14241 |
NN |
denotes |
duplex |
T7834 |
14249-14250 |
. |
denotes |
. |
T7835 |
14250-14323 |
sentence |
denotes |
They carried varied contents of cytosine residues on the 3′-tail strand. |
T7836 |
14251-14255 |
PRP |
denotes |
They |
T7837 |
14256-14263 |
VBD |
denotes |
carried |
T7838 |
14264-14270 |
VBN |
denotes |
varied |
T7839 |
14271-14279 |
NNS |
denotes |
contents |
T7840 |
14280-14282 |
IN |
denotes |
of |
T7841 |
14283-14291 |
NN |
denotes |
cytosine |
T7842 |
14292-14300 |
NNS |
denotes |
residues |
T7843 |
14301-14303 |
IN |
denotes |
on |
T7844 |
14304-14307 |
DT |
denotes |
the |
T7845 |
14316-14322 |
NN |
denotes |
strand |
T7846 |
14308-14309 |
CD |
denotes |
3 |
T7847 |
14311-14315 |
NN |
denotes |
tail |
T7848 |
14309-14310 |
SYM |
denotes |
′ |
T7849 |
14310-14311 |
HYPH |
denotes |
- |
T7850 |
14322-14323 |
. |
denotes |
. |
T7851 |
14323-14500 |
sentence |
denotes |
In gel shift assays, Mcm4/6/7 bound to these Y-fork substrates with identical affinity (Figure 8A), consistent with the notion that the Mcm4/6/7 binds to single-stranded tails. |
T7852 |
14324-14326 |
IN |
denotes |
In |
T7853 |
14354-14359 |
VBD |
denotes |
bound |
T7854 |
14327-14330 |
NN |
denotes |
gel |
T7855 |
14331-14336 |
NN |
denotes |
shift |
T7856 |
14337-14343 |
NNS |
denotes |
assays |
T7857 |
14343-14345 |
, |
denotes |
, |
T7858 |
14345-14349 |
NN |
denotes |
Mcm4 |
T7859 |
14349-14350 |
HYPH |
denotes |
/ |
T7860 |
14350-14351 |
CD |
denotes |
6 |
T7861 |
14351-14352 |
HYPH |
denotes |
/ |
T7862 |
14352-14353 |
CD |
denotes |
7 |
T7863 |
14360-14362 |
IN |
denotes |
to |
T7864 |
14363-14368 |
DT |
denotes |
these |
T7865 |
14376-14386 |
NNS |
denotes |
substrates |
T7866 |
14369-14370 |
NN |
denotes |
Y |
T7867 |
14371-14375 |
NN |
denotes |
fork |
T7868 |
14370-14371 |
HYPH |
denotes |
- |
T7869 |
14387-14391 |
IN |
denotes |
with |
T7870 |
14392-14401 |
JJ |
denotes |
identical |
T7871 |
14402-14410 |
NN |
denotes |
affinity |
T7872 |
14411-14412 |
-LRB- |
denotes |
( |
T7873 |
14419-14421 |
NN |
denotes |
8A |
T7874 |
14412-14418 |
NN |
denotes |
Figure |
T7875 |
14421-14422 |
-RRB- |
denotes |
) |
T7876 |
14422-14424 |
, |
denotes |
, |
T7877 |
14424-14434 |
JJ |
denotes |
consistent |
T7878 |
14435-14439 |
IN |
denotes |
with |
T7879 |
14440-14443 |
DT |
denotes |
the |
T7880 |
14444-14450 |
NN |
denotes |
notion |
T7881 |
14451-14455 |
IN |
denotes |
that |
T7882 |
14469-14474 |
VBZ |
denotes |
binds |
T7883 |
14456-14459 |
DT |
denotes |
the |
T7884 |
14460-14464 |
NN |
denotes |
Mcm4 |
T7885 |
14464-14465 |
HYPH |
denotes |
/ |
T7886 |
14465-14466 |
CD |
denotes |
6 |
T7887 |
14466-14467 |
HYPH |
denotes |
/ |
T7888 |
14467-14468 |
CD |
denotes |
7 |
T7889 |
14475-14477 |
IN |
denotes |
to |
T7890 |
14478-14484 |
JJ |
denotes |
single |
T7891 |
14485-14493 |
VBN |
denotes |
stranded |
T7892 |
14484-14485 |
HYPH |
denotes |
- |
T7893 |
14494-14499 |
NNS |
denotes |
tails |
T7894 |
14499-14500 |
. |
denotes |
. |
T7895 |
14500-14652 |
sentence |
denotes |
However, in DNA helicase assays, T-fork/(C:G)49 was hardly displaced by Mcm4/6/7, but was readily displaced by SV40 T-antigen DNA helicase (Figure 8B). |
T7896 |
14501-14508 |
RB |
denotes |
However |
T7897 |
14560-14569 |
VBN |
denotes |
displaced |
T7898 |
14508-14510 |
, |
denotes |
, |
T7899 |
14510-14512 |
IN |
denotes |
in |
T7900 |
14513-14516 |
NN |
denotes |
DNA |
T7901 |
14517-14525 |
NN |
denotes |
helicase |
T7902 |
14526-14532 |
NNS |
denotes |
assays |
T7903 |
14532-14534 |
, |
denotes |
, |
T7904 |
14534-14535 |
NN |
denotes |
T |
T7905 |
14536-14540 |
NN |
denotes |
fork |
T7906 |
14535-14536 |
HYPH |
denotes |
- |
T7907 |
14540-14541 |
HYPH |
denotes |
/ |
T7908 |
14541-14542 |
-LRB- |
denotes |
( |
T7909 |
14544-14545 |
NN |
denotes |
G |
T7910 |
14542-14543 |
NN |
denotes |
C |
T7911 |
14543-14544 |
: |
denotes |
: |
T7912 |
14545-14546 |
-RRB- |
denotes |
) |
T7913 |
14546-14548 |
CD |
denotes |
49 |
T7914 |
14549-14552 |
VBD |
denotes |
was |
T7915 |
14553-14559 |
RB |
denotes |
hardly |
T7916 |
14570-14572 |
IN |
denotes |
by |
T7917 |
14573-14577 |
NN |
denotes |
Mcm4 |
T7918 |
14577-14578 |
HYPH |
denotes |
/ |
T7919 |
14578-14579 |
CD |
denotes |
6 |
T7920 |
14579-14580 |
HYPH |
denotes |
/ |
T7921 |
14580-14581 |
CD |
denotes |
7 |
T7922 |
14581-14583 |
, |
denotes |
, |
T7923 |
14583-14586 |
CC |
denotes |
but |
T7924 |
14587-14590 |
VBD |
denotes |
was |
T7925 |
14599-14608 |
VBN |
denotes |
displaced |
T7926 |
14591-14598 |
RB |
denotes |
readily |
T7927 |
14609-14611 |
IN |
denotes |
by |
T7928 |
14612-14616 |
NN |
denotes |
SV40 |
T7929 |
14631-14639 |
NN |
denotes |
helicase |
T7930 |
14617-14618 |
NN |
denotes |
T |
T7931 |
14619-14626 |
NN |
denotes |
antigen |
T7932 |
14618-14619 |
HYPH |
denotes |
- |
T7933 |
14627-14630 |
NN |
denotes |
DNA |
T7934 |
14640-14641 |
-LRB- |
denotes |
( |
T7935 |
14648-14650 |
NN |
denotes |
8B |
T7936 |
14641-14647 |
NN |
denotes |
Figure |
T7937 |
14650-14651 |
-RRB- |
denotes |
) |
T7938 |
14651-14652 |
. |
denotes |
. |
T7939 |
14652-14818 |
sentence |
denotes |
When thymine or adenine is inserted as every third nucleotide (repeats of CCT or CCA), the extent of unwinding increased (T-fork/(CCT:GGA)16 and T-fork/(CCA:GGT)16). |
T7940 |
14653-14657 |
WRB |
denotes |
When |
T7941 |
14680-14688 |
VBN |
denotes |
inserted |
T7942 |
14658-14665 |
NN |
denotes |
thymine |
T7943 |
14666-14668 |
CC |
denotes |
or |
T7944 |
14669-14676 |
NN |
denotes |
adenine |
T7945 |
14677-14679 |
VBZ |
denotes |
is |
T7946 |
14764-14773 |
VBD |
denotes |
increased |
T7947 |
14689-14691 |
IN |
denotes |
as |
T7948 |
14692-14697 |
DT |
denotes |
every |
T7949 |
14704-14714 |
NN |
denotes |
nucleotide |
T7950 |
14698-14703 |
JJ |
denotes |
third |
T7951 |
14715-14716 |
-LRB- |
denotes |
( |
T7952 |
14716-14723 |
NNS |
denotes |
repeats |
T7953 |
14724-14726 |
IN |
denotes |
of |
T7954 |
14727-14730 |
NN |
denotes |
CCT |
T7955 |
14731-14733 |
CC |
denotes |
or |
T7956 |
14734-14737 |
NN |
denotes |
CCA |
T7957 |
14737-14738 |
-RRB- |
denotes |
) |
T7958 |
14738-14740 |
, |
denotes |
, |
T7959 |
14740-14743 |
DT |
denotes |
the |
T7960 |
14744-14750 |
NN |
denotes |
extent |
T7961 |
14751-14753 |
IN |
denotes |
of |
T7962 |
14754-14763 |
NN |
denotes |
unwinding |
T7963 |
14774-14775 |
-LRB- |
denotes |
( |
T7964 |
14787-14790 |
NN |
denotes |
GGA |
T7965 |
14775-14776 |
NN |
denotes |
T |
T7966 |
14777-14781 |
NN |
denotes |
fork |
T7967 |
14776-14777 |
HYPH |
denotes |
- |
T7968 |
14781-14782 |
HYPH |
denotes |
/ |
T7969 |
14782-14783 |
-LRB- |
denotes |
( |
T7970 |
14783-14786 |
NN |
denotes |
CCT |
T7971 |
14786-14787 |
: |
denotes |
: |
T7972 |
14790-14791 |
-RRB- |
denotes |
) |
T7973 |
14791-14793 |
CD |
denotes |
16 |
T7974 |
14794-14797 |
CC |
denotes |
and |
T7975 |
14798-14799 |
NN |
denotes |
T |
T7976 |
14800-14804 |
NN |
denotes |
fork |
T7977 |
14799-14800 |
HYPH |
denotes |
- |
T7978 |
14810-14813 |
NN |
denotes |
GGT |
T7979 |
14804-14805 |
HYPH |
denotes |
/ |
T7980 |
14805-14806 |
-LRB- |
denotes |
( |
T7981 |
14806-14809 |
NN |
denotes |
CCA |
T7982 |
14809-14810 |
: |
denotes |
: |
T7983 |
14813-14814 |
-RRB- |
denotes |
) |
T7984 |
14814-14816 |
CD |
denotes |
16 |
T7985 |
14816-14817 |
-RRB- |
denotes |
) |
T7986 |
14817-14818 |
. |
denotes |
. |
T7987 |
14818-15023 |
sentence |
denotes |
The efficiency of unwinding is roughly correlated with the content of GC pairs in the duplex segment [T-fork/(CCAA:GGTT)12, T-fork/(CCTT:GGAA)12, T-fork/(CAAA:GTTT)12 and T-fork/(CTTT:GAAA)12; Figure 8B]. |
T7988 |
14819-14822 |
DT |
denotes |
The |
T7989 |
14823-14833 |
NN |
denotes |
efficiency |
T7990 |
14858-14868 |
VBN |
denotes |
correlated |
T7991 |
14834-14836 |
IN |
denotes |
of |
T7992 |
14837-14846 |
NN |
denotes |
unwinding |
T7993 |
14847-14849 |
VBZ |
denotes |
is |
T7994 |
14850-14857 |
RB |
denotes |
roughly |
T7995 |
14869-14873 |
IN |
denotes |
with |
T7996 |
14874-14877 |
DT |
denotes |
the |
T7997 |
14878-14885 |
NN |
denotes |
content |
T7998 |
14886-14888 |
IN |
denotes |
of |
T7999 |
14889-14891 |
NN |
denotes |
GC |
T8000 |
14892-14897 |
NNS |
denotes |
pairs |
T8001 |
14898-14900 |
IN |
denotes |
in |
T8002 |
14901-14904 |
DT |
denotes |
the |
T8003 |
14912-14919 |
NN |
denotes |
segment |
T8004 |
14905-14911 |
NN |
denotes |
duplex |
T8005 |
14920-14921 |
-LRB- |
denotes |
[ |
T8006 |
14934-14938 |
NN |
denotes |
GGTT |
T8007 |
14921-14922 |
NN |
denotes |
T |
T8008 |
14923-14927 |
NN |
denotes |
fork |
T8009 |
14922-14923 |
HYPH |
denotes |
- |
T8010 |
14927-14928 |
HYPH |
denotes |
/ |
T8011 |
14928-14929 |
-LRB- |
denotes |
( |
T8012 |
14929-14933 |
NN |
denotes |
CCAA |
T8013 |
14933-14934 |
: |
denotes |
: |
T8014 |
14938-14939 |
-RRB- |
denotes |
) |
T8015 |
14939-14941 |
CD |
denotes |
12 |
T8016 |
14941-14943 |
, |
denotes |
, |
T8017 |
14943-14944 |
NN |
denotes |
T |
T8018 |
14945-14949 |
NN |
denotes |
fork |
T8019 |
14944-14945 |
HYPH |
denotes |
- |
T8020 |
14956-14960 |
NN |
denotes |
GGAA |
T8021 |
14949-14950 |
HYPH |
denotes |
/ |
T8022 |
14950-14951 |
-LRB- |
denotes |
( |
T8023 |
14951-14955 |
NN |
denotes |
CCTT |
T8024 |
14955-14956 |
: |
denotes |
: |
T8025 |
14960-14961 |
-RRB- |
denotes |
) |
T8026 |
14961-14963 |
CD |
denotes |
12 |
T8027 |
14963-14965 |
, |
denotes |
, |
T8028 |
14965-14966 |
NN |
denotes |
T |
T8029 |
14967-14971 |
NN |
denotes |
fork |
T8030 |
14966-14967 |
HYPH |
denotes |
- |
T8031 |
14978-14982 |
NN |
denotes |
GTTT |
T8032 |
14971-14972 |
HYPH |
denotes |
/ |
T8033 |
14972-14973 |
-LRB- |
denotes |
( |
T8034 |
14973-14977 |
NN |
denotes |
CAAA |
T8035 |
14977-14978 |
: |
denotes |
: |
T8036 |
14982-14983 |
-RRB- |
denotes |
) |
T8037 |
14983-14985 |
CD |
denotes |
12 |
T8038 |
14986-14989 |
CC |
denotes |
and |
T8039 |
14990-14991 |
NN |
denotes |
T |
T8040 |
14992-14996 |
NN |
denotes |
fork |
T8041 |
14991-14992 |
HYPH |
denotes |
- |
T8042 |
15003-15007 |
NN |
denotes |
GAAA |
T8043 |
14996-14997 |
HYPH |
denotes |
/ |
T8044 |
14997-14998 |
-LRB- |
denotes |
( |
T8045 |
14998-15002 |
NN |
denotes |
CTTT |
T8046 |
15002-15003 |
: |
denotes |
: |
T8047 |
15007-15008 |
-RRB- |
denotes |
) |
T8048 |
15008-15010 |
CD |
denotes |
12 |
T8049 |
15010-15011 |
: |
denotes |
; |
T8050 |
15019-15021 |
NN |
denotes |
8B |
T8051 |
15012-15018 |
NN |
denotes |
Figure |
T8052 |
15021-15022 |
-RRB- |
denotes |
] |
T8053 |
15022-15023 |
. |
denotes |
. |
T8054 |
15023-15119 |
sentence |
denotes |
It appears that the duplex segment containing <50% GC pairs is efficiently unwound (Figure 8C). |
T8055 |
15024-15026 |
PRP |
denotes |
It |
T8056 |
15027-15034 |
VBZ |
denotes |
appears |
T8057 |
15035-15039 |
IN |
denotes |
that |
T8058 |
15099-15106 |
VBN |
denotes |
unwound |
T8059 |
15040-15043 |
DT |
denotes |
the |
T8060 |
15051-15058 |
NN |
denotes |
segment |
T8061 |
15044-15050 |
NN |
denotes |
duplex |
T8062 |
15059-15069 |
VBG |
denotes |
containing |
T8063 |
15070-15071 |
SYM |
denotes |
< |
T8064 |
15071-15073 |
CD |
denotes |
50 |
T8065 |
15073-15074 |
NN |
denotes |
% |
T8066 |
15078-15083 |
NNS |
denotes |
pairs |
T8067 |
15075-15077 |
NN |
denotes |
GC |
T8068 |
15084-15086 |
VBZ |
denotes |
is |
T8069 |
15087-15098 |
RB |
denotes |
efficiently |
T8070 |
15107-15108 |
-LRB- |
denotes |
( |
T8071 |
15115-15117 |
NN |
denotes |
8C |
T8072 |
15108-15114 |
NN |
denotes |
Figure |
T8073 |
15117-15118 |
-RRB- |
denotes |
) |
T8074 |
15118-15119 |
. |
denotes |
. |
T8075 |
15119-15232 |
sentence |
denotes |
We next examined the effect of GC-rich segments on a partial heteroduplex DNA on a single-stranded circular DNA. |
T8076 |
15120-15122 |
PRP |
denotes |
We |
T8077 |
15128-15136 |
VBD |
denotes |
examined |
T8078 |
15123-15127 |
RB |
denotes |
next |
T8079 |
15137-15140 |
DT |
denotes |
the |
T8080 |
15141-15147 |
NN |
denotes |
effect |
T8081 |
15148-15150 |
IN |
denotes |
of |
T8082 |
15151-15153 |
NN |
denotes |
GC |
T8083 |
15154-15158 |
JJ |
denotes |
rich |
T8084 |
15153-15154 |
HYPH |
denotes |
- |
T8085 |
15159-15167 |
NNS |
denotes |
segments |
T8086 |
15168-15170 |
IN |
denotes |
on |
T8087 |
15171-15172 |
DT |
denotes |
a |
T8088 |
15194-15197 |
NN |
denotes |
DNA |
T8089 |
15173-15180 |
JJ |
denotes |
partial |
T8090 |
15181-15193 |
NN |
denotes |
heteroduplex |
T8091 |
15198-15200 |
IN |
denotes |
on |
T8092 |
15201-15202 |
DT |
denotes |
a |
T8093 |
15228-15231 |
NN |
denotes |
DNA |
T8094 |
15203-15209 |
JJ |
denotes |
single |
T8095 |
15210-15218 |
VBN |
denotes |
stranded |
T8096 |
15209-15210 |
HYPH |
denotes |
- |
T8097 |
15219-15227 |
JJ |
denotes |
circular |
T8098 |
15231-15232 |
. |
denotes |
. |
T8099 |
15232-15490 |
sentence |
denotes |
We have constructed two sets of 5′-tailed partial heteroduplex DNA substrates containing duplex regions of variable lengths; one on M13mp18 vector and the other on M13mp19 containing a 66 nt long G-rich segment downstream of the hybridizing oligonucleotide. |
T8100 |
15233-15235 |
PRP |
denotes |
We |
T8101 |
15241-15252 |
VBN |
denotes |
constructed |
T8102 |
15236-15240 |
VBP |
denotes |
have |
T8103 |
15253-15256 |
CD |
denotes |
two |
T8104 |
15257-15261 |
NNS |
denotes |
sets |
T8105 |
15262-15264 |
IN |
denotes |
of |
T8106 |
15265-15266 |
CD |
denotes |
5 |
T8107 |
15268-15274 |
VBN |
denotes |
tailed |
T8108 |
15266-15267 |
SYM |
denotes |
′ |
T8109 |
15267-15268 |
HYPH |
denotes |
- |
T8110 |
15300-15310 |
NNS |
denotes |
substrates |
T8111 |
15275-15282 |
JJ |
denotes |
partial |
T8112 |
15283-15295 |
NN |
denotes |
heteroduplex |
T8113 |
15296-15299 |
NN |
denotes |
DNA |
T8114 |
15311-15321 |
VBG |
denotes |
containing |
T8115 |
15322-15328 |
NN |
denotes |
duplex |
T8116 |
15329-15336 |
NNS |
denotes |
regions |
T8117 |
15337-15339 |
IN |
denotes |
of |
T8118 |
15340-15348 |
JJ |
denotes |
variable |
T8119 |
15349-15356 |
NNS |
denotes |
lengths |
T8120 |
15356-15357 |
: |
denotes |
; |
T8121 |
15358-15361 |
CD |
denotes |
one |
T8122 |
15362-15364 |
IN |
denotes |
on |
T8123 |
15365-15372 |
NN |
denotes |
M13mp18 |
T8124 |
15373-15379 |
NN |
denotes |
vector |
T8125 |
15380-15383 |
CC |
denotes |
and |
T8126 |
15384-15387 |
DT |
denotes |
the |
T8127 |
15388-15393 |
JJ |
denotes |
other |
T8128 |
15394-15396 |
IN |
denotes |
on |
T8129 |
15397-15404 |
NN |
denotes |
M13mp19 |
T8130 |
15405-15415 |
VBG |
denotes |
containing |
T8131 |
15416-15417 |
DT |
denotes |
a |
T8132 |
15436-15443 |
NN |
denotes |
segment |
T8133 |
15418-15420 |
CD |
denotes |
66 |
T8134 |
15421-15423 |
NN |
denotes |
nt |
T8135 |
15424-15428 |
JJ |
denotes |
long |
T8136 |
15429-15430 |
NN |
denotes |
G |
T8137 |
15431-15435 |
JJ |
denotes |
rich |
T8138 |
15430-15431 |
HYPH |
denotes |
- |
T8139 |
15444-15454 |
RB |
denotes |
downstream |
T8140 |
15455-15457 |
IN |
denotes |
of |
T8141 |
15458-15461 |
DT |
denotes |
the |
T8142 |
15474-15489 |
NN |
denotes |
oligonucleotide |
T8143 |
15462-15473 |
VBG |
denotes |
hybridizing |
T8144 |
15489-15490 |
. |
denotes |
. |
T8145 |
15490-15661 |
sentence |
denotes |
We found that the Mcm4/6/7 helicase can displace duplex DNA up to 350 nt long on its own on the former substrate (Figure 8D, left), consistent with previous results (13). |
T8146 |
15491-15493 |
PRP |
denotes |
We |
T8147 |
15494-15499 |
VBD |
denotes |
found |
T8148 |
15500-15504 |
IN |
denotes |
that |
T8149 |
15531-15539 |
VB |
denotes |
displace |
T8150 |
15505-15508 |
DT |
denotes |
the |
T8151 |
15518-15526 |
NN |
denotes |
helicase |
T8152 |
15509-15513 |
NN |
denotes |
Mcm4 |
T8153 |
15513-15514 |
HYPH |
denotes |
/ |
T8154 |
15514-15515 |
CD |
denotes |
6 |
T8155 |
15515-15516 |
HYPH |
denotes |
/ |
T8156 |
15516-15517 |
CD |
denotes |
7 |
T8157 |
15527-15530 |
MD |
denotes |
can |
T8158 |
15540-15546 |
NN |
denotes |
duplex |
T8159 |
15547-15550 |
NN |
denotes |
DNA |
T8160 |
15551-15553 |
IN |
denotes |
up |
T8161 |
15557-15560 |
CD |
denotes |
350 |
T8162 |
15554-15556 |
IN |
denotes |
to |
T8163 |
15561-15563 |
NN |
denotes |
nt |
T8164 |
15564-15568 |
JJ |
denotes |
long |
T8165 |
15569-15571 |
IN |
denotes |
on |
T8166 |
15572-15575 |
PRP$ |
denotes |
its |
T8167 |
15576-15579 |
JJ |
denotes |
own |
T8168 |
15580-15582 |
IN |
denotes |
on |
T8169 |
15583-15586 |
DT |
denotes |
the |
T8170 |
15594-15603 |
NN |
denotes |
substrate |
T8171 |
15587-15593 |
JJ |
denotes |
former |
T8172 |
15604-15605 |
-LRB- |
denotes |
( |
T8173 |
15612-15614 |
NN |
denotes |
8D |
T8174 |
15605-15611 |
NN |
denotes |
Figure |
T8175 |
15614-15616 |
, |
denotes |
, |
T8176 |
15616-15620 |
JJ |
denotes |
left |
T8177 |
15620-15621 |
-RRB- |
denotes |
) |
T8178 |
15621-15623 |
, |
denotes |
, |
T8179 |
15623-15633 |
JJ |
denotes |
consistent |
T8180 |
15634-15638 |
IN |
denotes |
with |
T8181 |
15639-15647 |
JJ |
denotes |
previous |
T8182 |
15648-15655 |
NNS |
denotes |
results |
T8183 |
15656-15657 |
-LRB- |
denotes |
( |
T8184 |
15657-15659 |
CD |
denotes |
13 |
T8185 |
15659-15660 |
-RRB- |
denotes |
) |
T8186 |
15660-15661 |
. |
denotes |
. |
T8187 |
15661-15908 |
sentence |
denotes |
In contrast, displacement was inhibited over the GC-rich segments on the latter substrate (Figure 8D, right panel), although displacement up to 250 nt in length, albeit at a reduced level, was observed at a high concentration of Mcm4/6/7 complex. |
T8188 |
15662-15664 |
IN |
denotes |
In |
T8189 |
15692-15701 |
VBN |
denotes |
inhibited |
T8190 |
15665-15673 |
NN |
denotes |
contrast |
T8191 |
15673-15675 |
, |
denotes |
, |
T8192 |
15675-15687 |
NN |
denotes |
displacement |
T8193 |
15688-15691 |
VBD |
denotes |
was |
T8194 |
15702-15706 |
IN |
denotes |
over |
T8195 |
15707-15710 |
DT |
denotes |
the |
T8196 |
15719-15727 |
NNS |
denotes |
segments |
T8197 |
15711-15713 |
NN |
denotes |
GC |
T8198 |
15714-15718 |
JJ |
denotes |
rich |
T8199 |
15713-15714 |
HYPH |
denotes |
- |
T8200 |
15728-15730 |
IN |
denotes |
on |
T8201 |
15731-15734 |
DT |
denotes |
the |
T8202 |
15742-15751 |
NN |
denotes |
substrate |
T8203 |
15735-15741 |
JJ |
denotes |
latter |
T8204 |
15752-15753 |
-LRB- |
denotes |
( |
T8205 |
15770-15775 |
NN |
denotes |
panel |
T8206 |
15753-15759 |
NN |
denotes |
Figure |
T8207 |
15760-15762 |
NN |
denotes |
8D |
T8208 |
15762-15764 |
, |
denotes |
, |
T8209 |
15764-15769 |
JJ |
denotes |
right |
T8210 |
15775-15776 |
-RRB- |
denotes |
) |
T8211 |
15776-15778 |
, |
denotes |
, |
T8212 |
15778-15786 |
IN |
denotes |
although |
T8213 |
15855-15863 |
VBN |
denotes |
observed |
T8214 |
15787-15799 |
NN |
denotes |
displacement |
T8215 |
15800-15802 |
IN |
denotes |
up |
T8216 |
15806-15809 |
CD |
denotes |
250 |
T8217 |
15803-15805 |
IN |
denotes |
to |
T8218 |
15810-15812 |
NN |
denotes |
nt |
T8219 |
15813-15815 |
IN |
denotes |
in |
T8220 |
15816-15822 |
NN |
denotes |
length |
T8221 |
15822-15824 |
, |
denotes |
, |
T8222 |
15824-15830 |
IN |
denotes |
albeit |
T8223 |
15831-15833 |
IN |
denotes |
at |
T8224 |
15834-15835 |
DT |
denotes |
a |
T8225 |
15844-15849 |
NN |
denotes |
level |
T8226 |
15836-15843 |
VBN |
denotes |
reduced |
T8227 |
15849-15851 |
, |
denotes |
, |
T8228 |
15851-15854 |
VBD |
denotes |
was |
T8229 |
15864-15866 |
IN |
denotes |
at |
T8230 |
15867-15868 |
DT |
denotes |
a |
T8231 |
15874-15887 |
NN |
denotes |
concentration |
T8232 |
15869-15873 |
JJ |
denotes |
high |
T8233 |
15888-15890 |
IN |
denotes |
of |
T8234 |
15891-15895 |
NN |
denotes |
Mcm4 |
T8235 |
15900-15907 |
NN |
denotes |
complex |
T8236 |
15895-15896 |
HYPH |
denotes |
/ |
T8237 |
15896-15897 |
CD |
denotes |
6 |
T8238 |
15897-15898 |
HYPH |
denotes |
/ |
T8239 |
15898-15899 |
CD |
denotes |
7 |
T8240 |
15907-15908 |
. |
denotes |
. |
T8241 |
15908-16045 |
sentence |
denotes |
This result is consistent with that on Y-fork and indicates that GC-rich duplex segment is inhibitory for unwinding by the Mcm helicase. |
T8242 |
15909-15913 |
DT |
denotes |
This |
T8243 |
15914-15920 |
NN |
denotes |
result |
T8244 |
15921-15923 |
VBZ |
denotes |
is |
T8245 |
15924-15934 |
JJ |
denotes |
consistent |
T8246 |
15935-15939 |
IN |
denotes |
with |
T8247 |
15940-15944 |
DT |
denotes |
that |
T8248 |
15945-15947 |
IN |
denotes |
on |
T8249 |
15948-15949 |
NN |
denotes |
Y |
T8250 |
15950-15954 |
NN |
denotes |
fork |
T8251 |
15949-15950 |
HYPH |
denotes |
- |
T8252 |
15955-15958 |
CC |
denotes |
and |
T8253 |
15959-15968 |
VBZ |
denotes |
indicates |
T8254 |
15969-15973 |
IN |
denotes |
that |
T8255 |
15997-15999 |
VBZ |
denotes |
is |
T8256 |
15974-15976 |
NN |
denotes |
GC |
T8257 |
15977-15981 |
JJ |
denotes |
rich |
T8258 |
15976-15977 |
HYPH |
denotes |
- |
T8259 |
15989-15996 |
NN |
denotes |
segment |
T8260 |
15982-15988 |
NN |
denotes |
duplex |
T8261 |
16000-16010 |
JJ |
denotes |
inhibitory |
T8262 |
16011-16014 |
IN |
denotes |
for |
T8263 |
16015-16024 |
NN |
denotes |
unwinding |
T8264 |
16025-16027 |
IN |
denotes |
by |
T8265 |
16028-16031 |
DT |
denotes |
the |
T8266 |
16036-16044 |
NN |
denotes |
helicase |
T8267 |
16032-16035 |
NN |
denotes |
Mcm |
T8268 |
16044-16045 |
. |
denotes |
. |
T8269 |
16045-16210 |
sentence |
denotes |
These results may indicate that the presence of thymine–adenine pairs with a certain frequency in the duplex region may facilitate continuous unwinding by Mcm4/6/7. |
T8270 |
16046-16051 |
DT |
denotes |
These |
T8271 |
16052-16059 |
NNS |
denotes |
results |
T8272 |
16064-16072 |
VB |
denotes |
indicate |
T8273 |
16060-16063 |
MD |
denotes |
may |
T8274 |
16073-16077 |
IN |
denotes |
that |
T8275 |
16166-16176 |
VB |
denotes |
facilitate |
T8276 |
16078-16081 |
DT |
denotes |
the |
T8277 |
16082-16090 |
NN |
denotes |
presence |
T8278 |
16091-16093 |
IN |
denotes |
of |
T8279 |
16094-16101 |
NN |
denotes |
thymine |
T8280 |
16102-16109 |
NN |
denotes |
adenine |
T8281 |
16101-16102 |
HYPH |
denotes |
– |
T8282 |
16110-16115 |
NNS |
denotes |
pairs |
T8283 |
16116-16120 |
IN |
denotes |
with |
T8284 |
16121-16122 |
DT |
denotes |
a |
T8285 |
16131-16140 |
NN |
denotes |
frequency |
T8286 |
16123-16130 |
JJ |
denotes |
certain |
T8287 |
16141-16143 |
IN |
denotes |
in |
T8288 |
16144-16147 |
DT |
denotes |
the |
T8289 |
16155-16161 |
NN |
denotes |
region |
T8290 |
16148-16154 |
NN |
denotes |
duplex |
T8291 |
16162-16165 |
MD |
denotes |
may |
T8292 |
16177-16187 |
JJ |
denotes |
continuous |
T8293 |
16188-16197 |
NN |
denotes |
unwinding |
T8294 |
16198-16200 |
IN |
denotes |
by |
T8295 |
16201-16205 |
NN |
denotes |
Mcm4 |
T8296 |
16205-16206 |
HYPH |
denotes |
/ |
T8297 |
16206-16207 |
CD |
denotes |
6 |
T8298 |
16207-16208 |
HYPH |
denotes |
/ |
T8299 |
16208-16209 |
CD |
denotes |
7 |
T8300 |
16209-16210 |
. |
denotes |
. |
T8301 |
16210-16319 |
sentence |
denotes |
Alternatively, Mcm4/6/7 is not efficient enough to displace thermodynamically stable GC-base-paired segment. |
T8302 |
16211-16224 |
RB |
denotes |
Alternatively |
T8303 |
16235-16237 |
VBZ |
denotes |
is |
T8304 |
16224-16226 |
, |
denotes |
, |
T8305 |
16226-16230 |
NN |
denotes |
Mcm4 |
T8306 |
16230-16231 |
HYPH |
denotes |
/ |
T8307 |
16231-16232 |
CD |
denotes |
6 |
T8308 |
16232-16233 |
HYPH |
denotes |
/ |
T8309 |
16233-16234 |
CD |
denotes |
7 |
T8310 |
16238-16241 |
RB |
denotes |
not |
T8311 |
16242-16251 |
JJ |
denotes |
efficient |
T8312 |
16252-16258 |
RB |
denotes |
enough |
T8313 |
16259-16261 |
TO |
denotes |
to |
T8314 |
16262-16270 |
VB |
denotes |
displace |
T8315 |
16271-16288 |
RB |
denotes |
thermodynamically |
T8316 |
16289-16295 |
JJ |
denotes |
stable |
T8317 |
16311-16318 |
NN |
denotes |
segment |
T8318 |
16296-16298 |
NN |
denotes |
GC |
T8319 |
16304-16310 |
VBN |
denotes |
paired |
T8320 |
16298-16299 |
HYPH |
denotes |
- |
T8321 |
16299-16303 |
NN |
denotes |
base |
T8322 |
16303-16304 |
HYPH |
denotes |
- |
T8323 |
16318-16319 |
. |
denotes |
. |
T8324 |
16319-16464 |
sentence |
denotes |
In order to distinguish these two possibilities, we designed a new T-fork substrate containing inosine (I) residue instead of guanosine residue. |
T8325 |
16320-16322 |
IN |
denotes |
In |
T8326 |
16372-16380 |
VBD |
denotes |
designed |
T8327 |
16323-16328 |
NN |
denotes |
order |
T8328 |
16329-16331 |
TO |
denotes |
to |
T8329 |
16332-16343 |
VB |
denotes |
distinguish |
T8330 |
16344-16349 |
DT |
denotes |
these |
T8331 |
16354-16367 |
NNS |
denotes |
possibilities |
T8332 |
16350-16353 |
CD |
denotes |
two |
T8333 |
16367-16369 |
, |
denotes |
, |
T8334 |
16369-16371 |
PRP |
denotes |
we |
T8335 |
16381-16382 |
DT |
denotes |
a |
T8336 |
16394-16403 |
NN |
denotes |
substrate |
T8337 |
16383-16386 |
JJ |
denotes |
new |
T8338 |
16387-16388 |
NN |
denotes |
T |
T8339 |
16389-16393 |
NN |
denotes |
fork |
T8340 |
16388-16389 |
HYPH |
denotes |
- |
T8341 |
16404-16414 |
VBG |
denotes |
containing |
T8342 |
16415-16422 |
NN |
denotes |
inosine |
T8343 |
16427-16434 |
NN |
denotes |
residue |
T8344 |
16423-16424 |
-LRB- |
denotes |
( |
T8345 |
16424-16425 |
NN |
denotes |
I |
T8346 |
16425-16426 |
-RRB- |
denotes |
) |
T8347 |
16435-16442 |
RB |
denotes |
instead |
T8348 |
16443-16445 |
IN |
denotes |
of |
T8349 |
16446-16455 |
NN |
denotes |
guanosine |
T8350 |
16456-16463 |
NN |
denotes |
residue |
T8351 |
16463-16464 |
. |
denotes |
. |
T8352 |
16464-16637 |
sentence |
denotes |
The thermal stability of the I:C base pair is lower than that of the G:C base pair in duplex DNA due to loss of one hydrogen bond and is even lower than A:T base pair (31). |
T8353 |
16465-16468 |
DT |
denotes |
The |
T8354 |
16477-16486 |
NN |
denotes |
stability |
T8355 |
16469-16476 |
JJ |
denotes |
thermal |
T8356 |
16508-16510 |
VBZ |
denotes |
is |
T8357 |
16487-16489 |
IN |
denotes |
of |
T8358 |
16490-16493 |
DT |
denotes |
the |
T8359 |
16503-16507 |
NN |
denotes |
pair |
T8360 |
16494-16495 |
NN |
denotes |
I |
T8361 |
16496-16497 |
NN |
denotes |
C |
T8362 |
16495-16496 |
: |
denotes |
: |
T8363 |
16498-16502 |
NN |
denotes |
base |
T8364 |
16511-16516 |
JJR |
denotes |
lower |
T8365 |
16517-16521 |
IN |
denotes |
than |
T8366 |
16522-16526 |
DT |
denotes |
that |
T8367 |
16527-16529 |
IN |
denotes |
of |
T8368 |
16530-16533 |
DT |
denotes |
the |
T8369 |
16543-16547 |
NN |
denotes |
pair |
T8370 |
16534-16535 |
NN |
denotes |
G |
T8371 |
16536-16537 |
NN |
denotes |
C |
T8372 |
16535-16536 |
: |
denotes |
: |
T8373 |
16538-16542 |
NN |
denotes |
base |
T8374 |
16548-16550 |
IN |
denotes |
in |
T8375 |
16551-16557 |
NN |
denotes |
duplex |
T8376 |
16558-16561 |
NN |
denotes |
DNA |
T8377 |
16562-16565 |
IN |
denotes |
due |
T8378 |
16566-16568 |
IN |
denotes |
to |
T8379 |
16569-16573 |
NN |
denotes |
loss |
T8380 |
16574-16576 |
IN |
denotes |
of |
T8381 |
16577-16580 |
CD |
denotes |
one |
T8382 |
16590-16594 |
NN |
denotes |
bond |
T8383 |
16581-16589 |
NN |
denotes |
hydrogen |
T8384 |
16595-16598 |
CC |
denotes |
and |
T8385 |
16599-16601 |
VBZ |
denotes |
is |
T8386 |
16602-16606 |
RB |
denotes |
even |
T8387 |
16607-16612 |
JJR |
denotes |
lower |
T8388 |
16613-16617 |
IN |
denotes |
than |
T8389 |
16618-16619 |
NN |
denotes |
A |
T8390 |
16620-16621 |
NN |
denotes |
T |
T8391 |
16619-16620 |
: |
denotes |
: |
T8392 |
16627-16631 |
NN |
denotes |
pair |
T8393 |
16622-16626 |
NN |
denotes |
base |
T8394 |
16632-16633 |
-LRB- |
denotes |
( |
T8395 |
16633-16635 |
CD |
denotes |
31 |
T8396 |
16635-16636 |
-RRB- |
denotes |
) |
T8397 |
16636-16637 |
. |
denotes |
. |
T8398 |
16637-16768 |
sentence |
denotes |
We constructed the T-tailed fork substrates containing the (GCC:CGG)10, (GCC:CIG)10 or (GAA:CTT)10 duplex DNA segment (Figure 8E). |
T8399 |
16638-16640 |
PRP |
denotes |
We |
T8400 |
16641-16652 |
VBD |
denotes |
constructed |
T8401 |
16653-16656 |
DT |
denotes |
the |
T8402 |
16671-16681 |
NNS |
denotes |
substrates |
T8403 |
16657-16658 |
NN |
denotes |
T |
T8404 |
16659-16665 |
VBN |
denotes |
tailed |
T8405 |
16658-16659 |
HYPH |
denotes |
- |
T8406 |
16666-16670 |
NN |
denotes |
fork |
T8407 |
16682-16692 |
VBG |
denotes |
containing |
T8408 |
16693-16696 |
DT |
denotes |
the |
T8409 |
16748-16755 |
NN |
denotes |
segment |
T8410 |
16697-16698 |
-LRB- |
denotes |
( |
T8411 |
16702-16705 |
NN |
denotes |
CGG |
T8412 |
16698-16701 |
NN |
denotes |
GCC |
T8413 |
16701-16702 |
: |
denotes |
: |
T8414 |
16705-16706 |
-RRB- |
denotes |
) |
T8415 |
16706-16708 |
CD |
denotes |
10 |
T8416 |
16708-16710 |
, |
denotes |
, |
T8417 |
16710-16711 |
-LRB- |
denotes |
( |
T8418 |
16715-16718 |
NN |
denotes |
CIG |
T8419 |
16711-16714 |
NN |
denotes |
GCC |
T8420 |
16714-16715 |
: |
denotes |
: |
T8421 |
16718-16719 |
-RRB- |
denotes |
) |
T8422 |
16719-16721 |
CD |
denotes |
10 |
T8423 |
16722-16724 |
CC |
denotes |
or |
T8424 |
16725-16726 |
-LRB- |
denotes |
( |
T8425 |
16730-16733 |
NN |
denotes |
CTT |
T8426 |
16726-16729 |
NN |
denotes |
GAA |
T8427 |
16729-16730 |
: |
denotes |
: |
T8428 |
16733-16734 |
-RRB- |
denotes |
) |
T8429 |
16734-16736 |
CD |
denotes |
10 |
T8430 |
16737-16743 |
NN |
denotes |
duplex |
T8431 |
16744-16747 |
NN |
denotes |
DNA |
T8432 |
16756-16757 |
-LRB- |
denotes |
( |
T8433 |
16764-16766 |
NN |
denotes |
8E |
T8434 |
16757-16763 |
NN |
denotes |
Figure |
T8435 |
16766-16767 |
-RRB- |
denotes |
) |
T8436 |
16767-16768 |
. |
denotes |
. |
T8437 |
16768-16914 |
sentence |
denotes |
Mcm4/6/7 hardly displaced the 31 nt long duplex of GCC:CGG repeats, whereas the T-fork/(GAA:CTT)10 was displaced efficiently, as described above. |
T8438 |
16769-16773 |
NN |
denotes |
Mcm4 |
T8439 |
16785-16794 |
VBD |
denotes |
displaced |
T8440 |
16773-16774 |
HYPH |
denotes |
/ |
T8441 |
16774-16775 |
CD |
denotes |
6 |
T8442 |
16775-16776 |
HYPH |
denotes |
/ |
T8443 |
16776-16777 |
CD |
denotes |
7 |
T8444 |
16778-16784 |
RB |
denotes |
hardly |
T8445 |
16795-16798 |
DT |
denotes |
the |
T8446 |
16810-16816 |
NN |
denotes |
duplex |
T8447 |
16799-16801 |
CD |
denotes |
31 |
T8448 |
16802-16804 |
NN |
denotes |
nt |
T8449 |
16805-16809 |
JJ |
denotes |
long |
T8450 |
16817-16819 |
IN |
denotes |
of |
T8451 |
16820-16823 |
NN |
denotes |
GCC |
T8452 |
16824-16827 |
NN |
denotes |
CGG |
T8453 |
16823-16824 |
: |
denotes |
: |
T8454 |
16828-16835 |
NNS |
denotes |
repeats |
T8455 |
16835-16837 |
, |
denotes |
, |
T8456 |
16837-16844 |
IN |
denotes |
whereas |
T8457 |
16872-16881 |
VBN |
denotes |
displaced |
T8458 |
16845-16848 |
DT |
denotes |
the |
T8459 |
16861-16864 |
NN |
denotes |
CTT |
T8460 |
16849-16850 |
NN |
denotes |
T |
T8461 |
16851-16855 |
NN |
denotes |
fork |
T8462 |
16850-16851 |
HYPH |
denotes |
- |
T8463 |
16855-16856 |
HYPH |
denotes |
/ |
T8464 |
16856-16857 |
-LRB- |
denotes |
( |
T8465 |
16857-16860 |
NN |
denotes |
GAA |
T8466 |
16860-16861 |
: |
denotes |
: |
T8467 |
16864-16865 |
-RRB- |
denotes |
) |
T8468 |
16865-16867 |
CD |
denotes |
10 |
T8469 |
16868-16871 |
VBD |
denotes |
was |
T8470 |
16882-16893 |
RB |
denotes |
efficiently |
T8471 |
16893-16895 |
, |
denotes |
, |
T8472 |
16895-16897 |
IN |
denotes |
as |
T8473 |
16898-16907 |
VBN |
denotes |
described |
T8474 |
16908-16913 |
RB |
denotes |
above |
T8475 |
16913-16914 |
. |
denotes |
. |
T8476 |
16914-17163 |
sentence |
denotes |
T-fork/(GCC:CIG)10 was displaced with efficiency much greater than that of T-fork/(GCC:CGG)10, indicating that the thermostability of the duplex segment, not the lack of AT base pair, is responsible for inability of Mcm4/6/7 to displace the duplex. |
T8477 |
16915-16916 |
NN |
denotes |
T |
T8478 |
16917-16921 |
NN |
denotes |
fork |
T8479 |
16916-16917 |
HYPH |
denotes |
- |
T8480 |
16927-16930 |
NN |
denotes |
CIG |
T8481 |
16921-16922 |
HYPH |
denotes |
/ |
T8482 |
16922-16923 |
-LRB- |
denotes |
( |
T8483 |
16923-16926 |
NN |
denotes |
GCC |
T8484 |
16926-16927 |
: |
denotes |
: |
T8485 |
16938-16947 |
VBN |
denotes |
displaced |
T8486 |
16930-16931 |
-RRB- |
denotes |
) |
T8487 |
16931-16933 |
CD |
denotes |
10 |
T8488 |
16934-16937 |
VBD |
denotes |
was |
T8489 |
16948-16952 |
IN |
denotes |
with |
T8490 |
16953-16963 |
NN |
denotes |
efficiency |
T8491 |
16964-16968 |
RB |
denotes |
much |
T8492 |
16969-16976 |
JJR |
denotes |
greater |
T8493 |
16977-16981 |
IN |
denotes |
than |
T8494 |
16982-16986 |
DT |
denotes |
that |
T8495 |
16987-16989 |
IN |
denotes |
of |
T8496 |
16990-16991 |
NN |
denotes |
T |
T8497 |
16992-16996 |
NN |
denotes |
fork |
T8498 |
16991-16992 |
HYPH |
denotes |
- |
T8499 |
17002-17005 |
NN |
denotes |
CGG |
T8500 |
16996-16997 |
HYPH |
denotes |
/ |
T8501 |
16997-16998 |
-LRB- |
denotes |
( |
T8502 |
16998-17001 |
NN |
denotes |
GCC |
T8503 |
17001-17002 |
: |
denotes |
: |
T8504 |
17005-17006 |
-RRB- |
denotes |
) |
T8505 |
17006-17008 |
CD |
denotes |
10 |
T8506 |
17008-17010 |
, |
denotes |
, |
T8507 |
17010-17020 |
VBG |
denotes |
indicating |
T8508 |
17021-17025 |
IN |
denotes |
that |
T8509 |
17099-17101 |
VBZ |
denotes |
is |
T8510 |
17026-17029 |
DT |
denotes |
the |
T8511 |
17030-17045 |
NN |
denotes |
thermostability |
T8512 |
17046-17048 |
IN |
denotes |
of |
T8513 |
17049-17052 |
DT |
denotes |
the |
T8514 |
17060-17067 |
NN |
denotes |
segment |
T8515 |
17053-17059 |
NN |
denotes |
duplex |
T8516 |
17067-17069 |
, |
denotes |
, |
T8517 |
17069-17072 |
CC |
denotes |
not |
T8518 |
17073-17076 |
DT |
denotes |
the |
T8519 |
17077-17081 |
NN |
denotes |
lack |
T8520 |
17082-17084 |
IN |
denotes |
of |
T8521 |
17085-17087 |
NN |
denotes |
AT |
T8522 |
17093-17097 |
NN |
denotes |
pair |
T8523 |
17088-17092 |
NN |
denotes |
base |
T8524 |
17097-17099 |
, |
denotes |
, |
T8525 |
17102-17113 |
JJ |
denotes |
responsible |
T8526 |
17114-17117 |
IN |
denotes |
for |
T8527 |
17118-17127 |
NN |
denotes |
inability |
T8528 |
17128-17130 |
IN |
denotes |
of |
T8529 |
17131-17135 |
NN |
denotes |
Mcm4 |
T8530 |
17135-17136 |
HYPH |
denotes |
/ |
T8531 |
17136-17137 |
CD |
denotes |
6 |
T8532 |
17137-17138 |
HYPH |
denotes |
/ |
T8533 |
17138-17139 |
CD |
denotes |
7 |
T8534 |
17140-17142 |
TO |
denotes |
to |
T8535 |
17143-17151 |
VB |
denotes |
displace |
T8536 |
17152-17155 |
DT |
denotes |
the |
T8537 |
17156-17162 |
NN |
denotes |
duplex |
T8538 |
17162-17163 |
. |
denotes |
. |
R2153 |
T3428 |
T3429 |
nmod |
Mcm4,complex |
R2154 |
T3429 |
T3434 |
nsubj |
complex,interacts |
R2155 |
T3430 |
T3428 |
punct |
/,Mcm4 |
R2156 |
T3431 |
T3428 |
nummod |
6,Mcm4 |
R2157 |
T3432 |
T3428 |
punct |
/,Mcm4 |
R2158 |
T3433 |
T3428 |
nummod |
7,Mcm4 |
R2159 |
T3435 |
T3434 |
advmod |
primarily,interacts |
R2160 |
T3436 |
T3434 |
prep |
with,interacts |
R2161 |
T3437 |
T3438 |
det |
the,segment |
R2162 |
T3438 |
T3436 |
pobj |
segment,with |
R2163 |
T3439 |
T3440 |
amod |
single,stranded |
R2164 |
T3440 |
T3438 |
amod |
stranded,segment |
R2165 |
T3441 |
T3440 |
punct |
-,stranded |
R2166 |
T3442 |
T3438 |
compound |
DNA,segment |
R2167 |
T3444 |
T3445 |
nsubj |
Mcm4,binds |
R2168 |
T3446 |
T3444 |
punct |
/,Mcm4 |
R2169 |
T3447 |
T3444 |
nummod |
6,Mcm4 |
R2170 |
T3448 |
T3444 |
punct |
/,Mcm4 |
R2171 |
T3449 |
T3444 |
nummod |
7,Mcm4 |
R2172 |
T3450 |
T3445 |
prep |
to,binds |
R2173 |
T3451 |
T3452 |
punct |
‘,substrates |
R2174 |
T3452 |
T3450 |
pobj |
substrates,to |
R2175 |
T3453 |
T3452 |
nmod |
bubble,substrates |
R2176 |
T3454 |
T3452 |
punct |
’,substrates |
R2177 |
T3455 |
T3452 |
compound |
DNA,substrates |
R2178 |
T3456 |
T3445 |
cc |
and,binds |
R2179 |
T3457 |
T3445 |
conj |
unwinds,binds |
R2180 |
T3458 |
T3459 |
det |
the,segments |
R2181 |
T3459 |
T3457 |
dobj |
segments,unwinds |
R2182 |
T3460 |
T3459 |
compound |
duplex,segments |
R2183 |
T3461 |
T3462 |
advmod |
when,contains |
R2184 |
T3462 |
T3457 |
advcl |
contains,unwinds |
R2185 |
T3463 |
T3464 |
det |
the,segment |
R2186 |
T3464 |
T3462 |
nsubj |
segment,contains |
R2187 |
T3465 |
T3464 |
amod |
central,segment |
R2188 |
T3466 |
T3467 |
amod |
single,stranded |
R2189 |
T3467 |
T3464 |
amod |
stranded,segment |
R2190 |
T3468 |
T3467 |
punct |
-,stranded |
R2191 |
T3469 |
T3470 |
compound |
thymine,stretches |
R2192 |
T3470 |
T3462 |
dobj |
stretches,contains |
R2193 |
T3471 |
T3472 |
punct |
(,13 |
R2194 |
T3472 |
T3462 |
parataxis |
13,contains |
R2195 |
T3473 |
T3472 |
punct |
),13 |
R2196 |
T3474 |
T3445 |
punct |
.,binds |
R2197 |
T3476 |
T3477 |
prep |
In,conducted |
R2198 |
T3478 |
T3476 |
pobj |
order,In |
R2199 |
T3479 |
T3480 |
aux |
to,examine |
R2200 |
T3480 |
T3478 |
acl |
examine,order |
R2201 |
T3481 |
T3482 |
det |
the,mode |
R2202 |
T3482 |
T3480 |
dobj |
mode,examine |
R2203 |
T3483 |
T3482 |
prep |
of,mode |
R2204 |
T3484 |
T3483 |
pobj |
binding,of |
R2205 |
T3485 |
T3484 |
prep |
of,binding |
R2206 |
T3486 |
T3485 |
pobj |
Mcm4,of |
R2207 |
T3487 |
T3486 |
punct |
/,Mcm4 |
R2208 |
T3488 |
T3486 |
nummod |
6,Mcm4 |
R2209 |
T3489 |
T3486 |
punct |
/,Mcm4 |
R2210 |
T3490 |
T3486 |
nummod |
7,Mcm4 |
R2211 |
T3491 |
T3484 |
prep |
on,binding |
R2212 |
T3492 |
T3493 |
compound |
bubble,DNAs |
R2213 |
T3493 |
T3491 |
pobj |
DNAs,on |
R2214 |
T3494 |
T3477 |
punct |
", ",conducted |
R2215 |
T3495 |
T3477 |
nsubj |
we,conducted |
R2216 |
T3496 |
T3497 |
compound |
nuclease,assays |
R2217 |
T3497 |
T3477 |
dobj |
assays,conducted |
R2218 |
T3498 |
T3497 |
compound |
protection,assays |
R2219 |
T3499 |
T3477 |
advcl |
using,conducted |
R2220 |
T3500 |
T3501 |
amod |
labeled,DNAs |
R2221 |
T3501 |
T3499 |
dobj |
DNAs,using |
R2222 |
T3502 |
T3503 |
compound |
bubble,substrate |
R2223 |
T3503 |
T3501 |
compound |
substrate,DNAs |
R2224 |
T3504 |
T3501 |
cc |
and,DNAs |
R2225 |
T3505 |
T3501 |
conj |
Mcm4,DNAs |
R2226 |
T3506 |
T3505 |
punct |
/,Mcm4 |
R2227 |
T3507 |
T3505 |
nummod |
6,Mcm4 |
R2228 |
T3508 |
T3505 |
punct |
/,Mcm4 |
R2229 |
T3509 |
T3505 |
nummod |
7,Mcm4 |
R2230 |
T3510 |
T3477 |
prep |
in,conducted |
R2231 |
T3511 |
T3512 |
det |
the,presence |
R2232 |
T3512 |
T3510 |
pobj |
presence,in |
R2233 |
T3513 |
T3512 |
prep |
of,presence |
R2234 |
T3514 |
T3515 |
nmod |
ATP,S |
R2235 |
T3515 |
T3513 |
pobj |
S,of |
R2236 |
T3516 |
T3515 |
punct |
-,S |
R2237 |
T3517 |
T3515 |
punct |
γ,S |
R2238 |
T3518 |
T3515 |
punct |
-,S |
R2239 |
T3519 |
T3520 |
dep |
which,permits |
R2240 |
T3520 |
T3515 |
relcl |
permits,S |
R2241 |
T3521 |
T3520 |
dobj |
binding,permits |
R2242 |
T3522 |
T3521 |
prep |
to,binding |
R2243 |
T3523 |
T3524 |
compound |
substrate,DNA |
R2244 |
T3524 |
T3522 |
pobj |
DNA,to |
R2245 |
T3525 |
T3520 |
cc |
but,permits |
R2246 |
T3526 |
T3527 |
aux |
does,mobilize |
R2247 |
T3527 |
T3520 |
conj |
mobilize,permits |
R2248 |
T3528 |
T3527 |
neg |
not,mobilize |
R2249 |
T3529 |
T3530 |
det |
the,helicase |
R2250 |
T3530 |
T3527 |
dobj |
helicase,mobilize |
R2251 |
T3531 |
T3477 |
punct |
.,conducted |
R2252 |
T3533 |
T3534 |
prep |
At,detected |
R2253 |
T3535 |
T3536 |
det |
an,concentration |
R2254 |
T3536 |
T3533 |
pobj |
concentration,At |
R2255 |
T3537 |
T3536 |
amod |
optimum,concentration |
R2256 |
T3538 |
T3536 |
prep |
of,concentration |
R2257 |
T3539 |
T3538 |
pobj |
DNase,of |
R2258 |
T3540 |
T3539 |
nummod |
I,DNase |
R2259 |
T3541 |
T3534 |
punct |
", ",detected |
R2260 |
T3542 |
T3543 |
amod |
strong,cleavages |
R2261 |
T3543 |
T3534 |
nsubjpass |
cleavages,detected |
R2262 |
T3544 |
T3534 |
auxpass |
were,detected |
R2263 |
T3545 |
T3534 |
prep |
on,detected |
R2264 |
T3546 |
T3547 |
det |
the,regions |
R2265 |
T3547 |
T3545 |
pobj |
regions,on |
R2266 |
T3548 |
T3549 |
nummod |
21,bp |
R2267 |
T3549 |
T3547 |
compound |
bp,regions |
R2268 |
T3550 |
T3547 |
compound |
duplex,regions |
R2269 |
T3551 |
T3534 |
prep |
at,detected |
R2270 |
T3552 |
T3553 |
det |
both,ends |
R2271 |
T3553 |
T3551 |
pobj |
ends,at |
R2272 |
T3554 |
T3553 |
prep |
of,ends |
R2273 |
T3555 |
T3556 |
det |
the,substrates |
R2274 |
T3556 |
T3554 |
pobj |
substrates,of |
R2275 |
T3557 |
T3534 |
punct |
", ",detected |
R2276 |
T3558 |
T3559 |
mark |
whereas,detected |
R2277 |
T3559 |
T3534 |
advcl |
detected,detected |
R2278 |
T3560 |
T3561 |
amod |
weaker,cleavages |
R2279 |
T3561 |
T3559 |
nsubjpass |
cleavages,detected |
R2280 |
T3562 |
T3559 |
auxpass |
were,detected |
R2281 |
T3563 |
T3559 |
prep |
on,detected |
R2282 |
T3564 |
T3565 |
det |
the,region |
R2283 |
T3565 |
T3563 |
pobj |
region,on |
R2284 |
T3566 |
T3565 |
amod |
central,region |
R2285 |
T3567 |
T3568 |
amod |
single,stranded |
R2286 |
T3568 |
T3565 |
amod |
stranded,region |
R2287 |
T3569 |
T3568 |
punct |
-,stranded |
R2288 |
T3570 |
T3559 |
punct |
", ",detected |
R2289 |
T3571 |
T3559 |
advcl |
consistent,detected |
R2290 |
T3572 |
T3571 |
prep |
with,consistent |
R2291 |
T3573 |
T3572 |
pobj |
preference,with |
R2292 |
T3574 |
T3573 |
prep |
of,preference |
R2293 |
T3575 |
T3574 |
pobj |
DNase,of |
R2294 |
T3576 |
T3575 |
nummod |
I,DNase |
R2295 |
T3577 |
T3573 |
prep |
to,preference |
R2296 |
T3578 |
T3579 |
amod |
double,stranded |
R2297 |
T3579 |
T3581 |
amod |
stranded,DNA |
R2298 |
T3580 |
T3579 |
punct |
-,stranded |
R2299 |
T3581 |
T3577 |
pobj |
DNA,to |
R2300 |
T3582 |
T3534 |
punct |
.,detected |
R2301 |
T3584 |
T3585 |
prep |
With,detected |
R2302 |
T3586 |
T3587 |
det |
the,substrate |
R2303 |
T3587 |
T3584 |
pobj |
substrate,With |
R2304 |
T3588 |
T3587 |
nmod |
Bub66,substrate |
R2305 |
T3589 |
T3588 |
punct |
/,Bub66 |
R2306 |
T3590 |
T3588 |
appos |
T,Bub66 |
R2307 |
T3591 |
T3590 |
punct |
-,T |
R2308 |
T3592 |
T3590 |
amod |
rich,T |
R2309 |
T3593 |
T3585 |
punct |
", ",detected |
R2310 |
T3594 |
T3595 |
amod |
strong,protection |
R2311 |
T3595 |
T3585 |
nsubjpass |
protection,detected |
R2312 |
T3596 |
T3585 |
auxpass |
was,detected |
R2313 |
T3597 |
T3585 |
prep |
on,detected |
R2314 |
T3598 |
T3599 |
det |
the,regions |
R2315 |
T3599 |
T3597 |
pobj |
regions,on |
R2316 |
T3600 |
T3599 |
amod |
entire,regions |
R2317 |
T3601 |
T3602 |
amod |
single,stranded |
R2318 |
T3602 |
T3599 |
amod |
stranded,regions |
R2319 |
T3603 |
T3602 |
punct |
-,stranded |
R2320 |
T3604 |
T3599 |
prep |
of,regions |
R2321 |
T3605 |
T3606 |
preconj |
both,top |
R2322 |
T3606 |
T3607 |
amod |
top,strands |
R2323 |
T3607 |
T3604 |
pobj |
strands,of |
R2324 |
T3608 |
T3606 |
cc |
and,top |
R2325 |
T3609 |
T3606 |
conj |
bottom,top |
R2326 |
T3610 |
T3585 |
prep |
with,detected |
R2327 |
T3611 |
T3612 |
amod |
increasing,concentration |
R2328 |
T3612 |
T3610 |
pobj |
concentration,with |
R2329 |
T3613 |
T3612 |
prep |
of,concentration |
R2330 |
T3614 |
T3613 |
pobj |
Mcm4,of |
R2331 |
T3615 |
T3614 |
punct |
/,Mcm4 |
R2332 |
T3616 |
T3614 |
nummod |
6,Mcm4 |
R2333 |
T3617 |
T3614 |
punct |
/,Mcm4 |
R2334 |
T3618 |
T3614 |
nummod |
7,Mcm4 |
R2335 |
T3619 |
T3585 |
punct |
", ",detected |
R2336 |
T3620 |
T3585 |
advcl |
consistent,detected |
R2337 |
T3621 |
T3620 |
prep |
with,consistent |
R2338 |
T3622 |
T3623 |
amod |
high,affinity |
R2339 |
T3623 |
T3621 |
pobj |
affinity,with |
R2340 |
T3624 |
T3623 |
prep |
of,affinity |
R2341 |
T3625 |
T3624 |
pobj |
Mcm4,of |
R2342 |
T3626 |
T3625 |
punct |
/,Mcm4 |
R2343 |
T3627 |
T3625 |
nummod |
6,Mcm4 |
R2344 |
T3628 |
T3625 |
punct |
/,Mcm4 |
R2345 |
T3629 |
T3625 |
nummod |
7,Mcm4 |
R2346 |
T3630 |
T3623 |
prep |
to,affinity |
R2347 |
T3631 |
T3632 |
nmod |
T,sequences |
R2348 |
T3632 |
T3630 |
pobj |
sequences,to |
R2349 |
T3633 |
T3631 |
punct |
-,T |
R2350 |
T3634 |
T3631 |
amod |
rich,T |
R2351 |
T3635 |
T3632 |
compound |
bubble,sequences |
R2352 |
T3636 |
T3637 |
punct |
(,1A |
R2353 |
T3637 |
T3585 |
parataxis |
1A,detected |
R2354 |
T3638 |
T3637 |
compound |
Figure,1A |
R2355 |
T3639 |
T3637 |
punct |
),1A |
R2356 |
T3640 |
T3585 |
punct |
.,detected |
R2357 |
T3642 |
T3643 |
amod |
Similar,protection |
R2358 |
T3643 |
T3648 |
nsubjpass |
protection,detected |
R2359 |
T3644 |
T3642 |
punct |
", ",Similar |
R2360 |
T3645 |
T3642 |
cc |
but,Similar |
R2361 |
T3646 |
T3647 |
advmod |
less,significant |
R2362 |
T3647 |
T3642 |
conj |
significant,Similar |
R2363 |
T3649 |
T3648 |
auxpass |
was,detected |
R2364 |
T3650 |
T3648 |
prep |
on,detected |
R2365 |
T3651 |
T3652 |
det |
the,segment |
R2366 |
T3652 |
T3650 |
pobj |
segment,on |
R2367 |
T3653 |
T3654 |
amod |
single,stranded |
R2368 |
T3654 |
T3652 |
amod |
stranded,segment |
R2369 |
T3655 |
T3654 |
punct |
-,stranded |
R2370 |
T3656 |
T3652 |
compound |
DNA,segment |
R2371 |
T3657 |
T3652 |
prep |
with,segment |
R2372 |
T3658 |
T3659 |
compound |
P1,nucleases |
R2373 |
T3659 |
T3657 |
pobj |
nucleases,with |
R2374 |
T3660 |
T3661 |
punct |
(,1A |
R2375 |
T3661 |
T3652 |
parataxis |
1A,segment |
R2376 |
T3662 |
T3661 |
compound |
Figure,1A |
R2377 |
T3663 |
T3661 |
punct |
),1A |
R2378 |
T3664 |
T3652 |
punct |
", ",segment |
R2379 |
T3665 |
T3666 |
dep |
which,is |
R2380 |
T3666 |
T3652 |
relcl |
is,segment |
R2381 |
T3667 |
T3666 |
acomp |
specific,is |
R2382 |
T3668 |
T3667 |
prep |
to,specific |
R2383 |
T3669 |
T3670 |
amod |
single,stranded |
R2384 |
T3670 |
T3672 |
amod |
stranded,DNA |
R2385 |
T3671 |
T3670 |
punct |
-,stranded |
R2386 |
T3672 |
T3668 |
pobj |
DNA,to |
R2387 |
T3673 |
T3648 |
punct |
.,detected |
R2388 |
T3675 |
T3676 |
det |
The,results |
R2389 |
T3676 |
T3677 |
nsubj |
results,indicate |
R2390 |
T3678 |
T3679 |
mark |
that,loaded |
R2391 |
T3679 |
T3677 |
ccomp |
loaded,indicate |
R2392 |
T3680 |
T3681 |
det |
the,complex |
R2393 |
T3681 |
T3679 |
nsubjpass |
complex,loaded |
R2394 |
T3682 |
T3681 |
compound |
Mcm,complex |
R2395 |
T3683 |
T3679 |
auxpass |
is,loaded |
R2396 |
T3684 |
T3679 |
prep |
onto,loaded |
R2397 |
T3685 |
T3686 |
compound |
bubble,DNA |
R2398 |
T3686 |
T3684 |
pobj |
DNA,onto |
R2399 |
T3687 |
T3679 |
prep |
through,loaded |
R2400 |
T3688 |
T3687 |
pobj |
binding,through |
R2401 |
T3689 |
T3688 |
prep |
to,binding |
R2402 |
T3690 |
T3691 |
det |
both,strands |
R2403 |
T3691 |
T3689 |
pobj |
strands,to |
R2404 |
T3692 |
T3691 |
prep |
of,strands |
R2405 |
T3693 |
T3694 |
det |
the,region |
R2406 |
T3694 |
T3692 |
pobj |
region,of |
R2407 |
T3695 |
T3696 |
amod |
single,stranded |
R2408 |
T3696 |
T3694 |
amod |
stranded,region |
R2409 |
T3697 |
T3696 |
punct |
-,stranded |
R2410 |
T3698 |
T3677 |
punct |
.,indicate |
R2411 |
T3700 |
T3701 |
amod |
Careful,examination |
R2412 |
T3701 |
T3702 |
nsubj |
examination,indicated |
R2413 |
T3703 |
T3701 |
prep |
of,examination |
R2414 |
T3704 |
T3705 |
nmod |
Mcm4,footprints |
R2415 |
T3705 |
T3703 |
pobj |
footprints,of |
R2416 |
T3706 |
T3704 |
punct |
/,Mcm4 |
R2417 |
T3707 |
T3704 |
nummod |
6,Mcm4 |
R2418 |
T3708 |
T3704 |
punct |
/,Mcm4 |
R2419 |
T3709 |
T3704 |
nummod |
7,Mcm4 |
R2420 |
T3710 |
T3705 |
prep |
on,footprints |
R2421 |
T3711 |
T3712 |
det |
a,bubble |
R2422 |
T3712 |
T3710 |
pobj |
bubble,on |
R2423 |
T3713 |
T3714 |
amod |
strong,protection |
R2424 |
T3714 |
T3702 |
dobj |
protection,indicated |
R2425 |
T3715 |
T3714 |
prep |
on,protection |
R2426 |
T3716 |
T3717 |
det |
the,half |
R2427 |
T3717 |
T3715 |
pobj |
half,on |
R2428 |
T3718 |
T3717 |
nummod |
5,half |
R2429 |
T3719 |
T3718 |
punct |
′,5 |
R2430 |
T3720 |
T3717 |
punct |
-,half |
R2431 |
T3721 |
T3717 |
prep |
of,half |
R2432 |
T3722 |
T3723 |
det |
the,strand |
R2433 |
T3723 |
T3721 |
pobj |
strand,of |
R2434 |
T3724 |
T3723 |
amod |
top,strand |
R2435 |
T3725 |
T3714 |
cc |
and,protection |
R2436 |
T3726 |
T3727 |
amod |
moderate,protection |
R2437 |
T3727 |
T3714 |
conj |
protection,protection |
R2438 |
T3728 |
T3727 |
prep |
on,protection |
R2439 |
T3729 |
T3730 |
det |
the,half |
R2440 |
T3730 |
T3728 |
pobj |
half,on |
R2441 |
T3731 |
T3730 |
amod |
remaining,half |
R2442 |
T3732 |
T3730 |
nummod |
3,half |
R2443 |
T3733 |
T3732 |
punct |
′,3 |
R2444 |
T3734 |
T3730 |
punct |
-,half |
R2445 |
T3735 |
T3728 |
punct |
", ",on |
R2446 |
T3736 |
T3737 |
advmod |
as,as |
R2447 |
T3737 |
T3728 |
cc |
as,on |
R2448 |
T3738 |
T3737 |
advmod |
well,as |
R2449 |
T3739 |
T3728 |
conj |
on,on |
R2450 |
T3740 |
T3741 |
amod |
several,segment |
R2451 |
T3741 |
T3739 |
pobj |
segment,on |
R2452 |
T3742 |
T3743 |
compound |
base,pair |
R2453 |
T3743 |
T3741 |
compound |
pair,segment |
R2454 |
T3744 |
T3743 |
punct |
-,pair |
R2455 |
T3745 |
T3741 |
compound |
duplex,segment |
R2456 |
T3746 |
T3741 |
amod |
adjacent,segment |
R2457 |
T3747 |
T3746 |
prep |
to,adjacent |
R2458 |
T3748 |
T3749 |
det |
the,point |
R2459 |
T3749 |
T3747 |
pobj |
point,to |
R2460 |
T3750 |
T3749 |
compound |
branch,point |
R2461 |
T3751 |
T3752 |
punct |
(,1A |
R2462 |
T3752 |
T3739 |
parataxis |
1A,on |
R2463 |
T3753 |
T3752 |
compound |
Figure,1A |
R2464 |
T3754 |
T3752 |
cc |
and,1A |
R2465 |
T3755 |
T3752 |
conj |
data,1A |
R2466 |
T3756 |
T3757 |
neg |
not,shown |
R2467 |
T3757 |
T3755 |
acl |
shown,data |
R2468 |
T3758 |
T3752 |
punct |
),1A |
R2469 |
T3759 |
T3702 |
punct |
.,indicated |
R2470 |
T3761 |
T3762 |
det |
A,pattern |
R2471 |
T3762 |
T3764 |
nsubjpass |
pattern,observed |
R2472 |
T3763 |
T3762 |
amod |
similar,pattern |
R2473 |
T3765 |
T3762 |
prep |
of,pattern |
R2474 |
T3766 |
T3765 |
pobj |
protection,of |
R2475 |
T3767 |
T3764 |
auxpass |
was,observed |
R2476 |
T3768 |
T3764 |
advmod |
also,observed |
R2477 |
T3769 |
T3764 |
prep |
on,observed |
R2478 |
T3770 |
T3771 |
det |
the,strand |
R2479 |
T3771 |
T3769 |
pobj |
strand,on |
R2480 |
T3772 |
T3771 |
amod |
bottom,strand |
R2481 |
T3773 |
T3764 |
punct |
.,observed |
R2482 |
T3775 |
T3776 |
nsubj |
This,suggests |
R2483 |
T3777 |
T3778 |
mark |
that,bind |
R2484 |
T3778 |
T3776 |
ccomp |
bind,suggests |
R2485 |
T3779 |
T3778 |
nsubj |
Mcm4,bind |
R2486 |
T3780 |
T3779 |
punct |
/,Mcm4 |
R2487 |
T3781 |
T3779 |
nummod |
6,Mcm4 |
R2488 |
T3782 |
T3779 |
punct |
/,Mcm4 |
R2489 |
T3783 |
T3779 |
nummod |
7,Mcm4 |
R2490 |
T3784 |
T3778 |
aux |
may,bind |
R2491 |
T3785 |
T3778 |
prep |
to,bind |
R2492 |
T3786 |
T3787 |
det |
a,substrate |
R2493 |
T3787 |
T3785 |
pobj |
substrate,to |
R2494 |
T3788 |
T3787 |
compound |
replication,substrate |
R2495 |
T3789 |
T3787 |
compound |
bubble,substrate |
R2496 |
T3790 |
T3787 |
prep |
with,substrate |
R2497 |
T3791 |
T3792 |
det |
a,symmetry |
R2498 |
T3792 |
T3790 |
pobj |
symmetry,with |
R2499 |
T3793 |
T3792 |
nummod |
2-fold,symmetry |
R2500 |
T3794 |
T3778 |
prep |
as,bind |
R2501 |
T3795 |
T3796 |
det |
a,hexamer |
R2502 |
T3796 |
T3794 |
pobj |
hexamer,as |
R2503 |
T3797 |
T3796 |
amod |
double,hexamer |
R2504 |
T3798 |
T3799 |
punct |
(,1A |
R2505 |
T3799 |
T3796 |
parataxis |
1A,hexamer |
R2506 |
T3800 |
T3799 |
compound |
Figure,1A |
R2507 |
T3801 |
T3799 |
punct |
", ",1A |
R2508 |
T3802 |
T3799 |
advcl |
see,1A |
R2509 |
T3803 |
T3804 |
det |
the,scheme |
R2510 |
T3804 |
T3802 |
dobj |
scheme,see |
R2511 |
T3805 |
T3804 |
amod |
lower,scheme |
R2512 |
T3806 |
T3799 |
punct |
),1A |
R2513 |
T3807 |
T3778 |
punct |
", ",bind |
R2514 |
T3808 |
T3778 |
prep |
in,bind |
R2515 |
T3809 |
T3810 |
det |
a,manner |
R2516 |
T3810 |
T3808 |
pobj |
manner,in |
R2517 |
T3811 |
T3810 |
amod |
similar,manner |
R2518 |
T3812 |
T3811 |
prep |
to,similar |
R2519 |
T3813 |
T3814 |
compound |
SV40,antigen |
R2520 |
T3814 |
T3812 |
pobj |
antigen,to |
R2521 |
T3815 |
T3814 |
compound |
T,antigen |
R2522 |
T3816 |
T3814 |
punct |
-,antigen |
R2523 |
T3817 |
T3818 |
punct |
(,21 |
R2524 |
T3818 |
T3778 |
parataxis |
21,bind |
R2525 |
T3819 |
T3818 |
punct |
),21 |
R2526 |
T3820 |
T3776 |
punct |
.,suggests |
R2527 |
T3822 |
T3823 |
compound |
Nuclease,protection |
R2528 |
T3823 |
T3824 |
compound |
protection,assays |
R2529 |
T3824 |
T3825 |
nsubjpass |
assays,conducted |
R2530 |
T3826 |
T3825 |
auxpass |
were,conducted |
R2531 |
T3827 |
T3825 |
advmod |
also,conducted |
R2532 |
T3828 |
T3825 |
prep |
on,conducted |
R2533 |
T3829 |
T3830 |
det |
a,structure |
R2534 |
T3830 |
T3828 |
pobj |
structure,on |
R2535 |
T3831 |
T3832 |
npadvmod |
T,tailed |
R2536 |
T3832 |
T3830 |
amod |
tailed,structure |
R2537 |
T3833 |
T3832 |
punct |
-,tailed |
R2538 |
T3834 |
T3835 |
compound |
Y,fork |
R2539 |
T3835 |
T3830 |
compound |
fork,structure |
R2540 |
T3836 |
T3835 |
punct |
-,fork |
R2541 |
T3837 |
T3838 |
punct |
(,1B |
R2542 |
T3838 |
T3825 |
parataxis |
1B,conducted |
R2543 |
T3839 |
T3838 |
compound |
Figure,1B |
R2544 |
T3840 |
T3838 |
punct |
),1B |
R2545 |
T3841 |
T3825 |
punct |
.,conducted |
R2546 |
T3843 |
T3844 |
preconj |
Not,region |
R2547 |
T3844 |
T3851 |
nsubjpass |
region,protected |
R2548 |
T3845 |
T3843 |
advmod |
only,Not |
R2549 |
T3846 |
T3844 |
det |
the,region |
R2550 |
T3847 |
T3848 |
amod |
single,stranded |
R2551 |
T3848 |
T3844 |
amod |
stranded,region |
R2552 |
T3849 |
T3848 |
punct |
-,stranded |
R2553 |
T3850 |
T3844 |
compound |
tail,region |
R2554 |
T3852 |
T3844 |
cc |
but,region |
R2555 |
T3853 |
T3852 |
advmod |
also,but |
R2556 |
T3854 |
T3855 |
det |
the,DNA |
R2557 |
T3855 |
T3844 |
conj |
DNA,region |
R2558 |
T3856 |
T3857 |
nummod |
7,bp |
R2559 |
T3857 |
T3855 |
compound |
bp,DNA |
R2560 |
T3858 |
T3855 |
compound |
duplex,DNA |
R2561 |
T3859 |
T3855 |
amod |
adjacent,DNA |
R2562 |
T3860 |
T3859 |
prep |
to,adjacent |
R2563 |
T3861 |
T3862 |
det |
the,junction |
R2564 |
T3862 |
T3860 |
pobj |
junction,to |
R2565 |
T3863 |
T3862 |
nmod |
duplex,junction |
R2566 |
T3864 |
T3863 |
punct |
-,duplex |
R2567 |
T3865 |
T3863 |
prep |
to,duplex |
R2568 |
T3866 |
T3865 |
punct |
-,to |
R2569 |
T3867 |
T3868 |
amod |
single,strand |
R2570 |
T3868 |
T3865 |
pobj |
strand,to |
R2571 |
T3869 |
T3868 |
punct |
-,strand |
R2572 |
T3870 |
T3851 |
auxpass |
were,protected |
R2573 |
T3871 |
T3851 |
agent |
by,protected |
R2574 |
T3872 |
T3873 |
compound |
Mcm,binding |
R2575 |
T3873 |
T3871 |
pobj |
binding,by |
R2576 |
T3874 |
T3873 |
prep |
from,binding |
R2577 |
T3875 |
T3876 |
compound |
DNaseI,digestion |
R2578 |
T3876 |
T3874 |
pobj |
digestion,from |
R2579 |
T3877 |
T3851 |
punct |
.,protected |
R2580 |
T3879 |
T3880 |
det |
These,results |
R2581 |
T3880 |
T3881 |
nsubj |
results,indicate |
R2582 |
T3882 |
T3883 |
mark |
that,interacts |
R2583 |
T3883 |
T3881 |
advcl |
interacts,indicate |
R2584 |
T3884 |
T3885 |
nmod |
Mcm4,protein |
R2585 |
T3885 |
T3883 |
nsubj |
protein,interacts |
R2586 |
T3886 |
T3884 |
punct |
/,Mcm4 |
R2587 |
T3887 |
T3884 |
nummod |
6,Mcm4 |
R2588 |
T3888 |
T3884 |
punct |
/,Mcm4 |
R2589 |
T3889 |
T3884 |
nummod |
7,Mcm4 |
R2590 |
T3890 |
T3883 |
advmod |
primarily,interacts |
R2591 |
T3891 |
T3883 |
prep |
with,interacts |
R2592 |
T3892 |
T3893 |
amod |
single,stranded |
R2593 |
T3893 |
T3895 |
amod |
stranded,region |
R2594 |
T3894 |
T3893 |
punct |
-,stranded |
R2595 |
T3895 |
T3891 |
pobj |
region,with |
R2596 |
T3896 |
T3895 |
compound |
DNA,region |
R2597 |
T3897 |
T3883 |
cc |
and,interacts |
R2598 |
T3898 |
T3899 |
mark |
that,spans |
R2599 |
T3899 |
T3883 |
conj |
spans,interacts |
R2600 |
T3900 |
T3901 |
det |
the,interaction |
R2601 |
T3901 |
T3899 |
nsubj |
interaction,spans |
R2602 |
T3902 |
T3899 |
advmod |
also,spans |
R2603 |
T3903 |
T3904 |
det |
the,segments |
R2604 |
T3904 |
T3899 |
dobj |
segments,spans |
R2605 |
T3905 |
T3904 |
compound |
duplex,segments |
R2606 |
T3906 |
T3904 |
prep |
near,segments |
R2607 |
T3907 |
T3908 |
det |
the,branchpoint |
R2608 |
T3908 |
T3906 |
pobj |
branchpoint,near |
R2609 |
T3909 |
T3908 |
prep |
of,branchpoint |
R2610 |
T3910 |
T3911 |
det |
the,fork |
R2611 |
T3911 |
T3909 |
pobj |
fork,of |
R2612 |
T3912 |
T3911 |
compound |
replication,fork |
R2613 |
T3913 |
T3881 |
punct |
.,indicate |
R2617 |
T4077 |
T4078 |
nsubj |
Formation,facilitates |
R2618 |
T4079 |
T4077 |
prep |
of,Formation |
R2619 |
T4080 |
T4081 |
amod |
double,hexameric |
R2620 |
T4081 |
T4082 |
amod |
hexameric,complexes |
R2621 |
T4082 |
T4079 |
pobj |
complexes,of |
R2622 |
T4083 |
T4082 |
nmod |
Mcm4,complexes |
R2623 |
T4084 |
T4083 |
punct |
/,Mcm4 |
R2624 |
T4085 |
T4083 |
nummod |
6,Mcm4 |
R2625 |
T4086 |
T4083 |
punct |
/,Mcm4 |
R2626 |
T4087 |
T4083 |
nummod |
7,Mcm4 |
R2627 |
T4088 |
T4089 |
compound |
helicase,actions |
R2628 |
T4089 |
T4078 |
dobj |
actions,facilitates |
R2629 |
T4090 |
T4078 |
prep |
on,facilitates |
R2630 |
T4091 |
T4092 |
compound |
bubble,substrates |
R2631 |
T4092 |
T4090 |
pobj |
substrates,on |
R2632 |
T4094 |
T4095 |
det |
The,results |
R2633 |
T4095 |
T4097 |
nsubj |
results,suggest |
R2634 |
T4096 |
T4095 |
amod |
above,results |
R2635 |
T4098 |
T4099 |
mark |
that,generates |
R2636 |
T4099 |
T4097 |
ccomp |
generates,suggest |
R2637 |
T4100 |
T4099 |
nsubj |
Mcm4,generates |
R2638 |
T4101 |
T4100 |
punct |
/,Mcm4 |
R2639 |
T4102 |
T4100 |
nummod |
6,Mcm4 |
R2640 |
T4103 |
T4100 |
punct |
/,Mcm4 |
R2641 |
T4104 |
T4100 |
nummod |
7,Mcm4 |
R2642 |
T4105 |
T4106 |
det |
a,complex |
R2643 |
T4106 |
T4099 |
dobj |
complex,generates |
R2644 |
T4107 |
T4108 |
amod |
double,hexameric |
R2645 |
T4108 |
T4106 |
amod |
hexameric,complex |
R2646 |
T4109 |
T4099 |
prep |
on,generates |
R2647 |
T4110 |
T4111 |
det |
a,bubble |
R2648 |
T4111 |
T4109 |
pobj |
bubble,on |
R2649 |
T4112 |
T4099 |
punct |
", ",generates |
R2650 |
T4113 |
T4114 |
det |
each,hexamer |
R2651 |
T4114 |
T4115 |
dep |
hexamer,makes |
R2652 |
T4115 |
T4099 |
ccomp |
makes,generates |
R2653 |
T4116 |
T4114 |
prep |
of,hexamer |
R2654 |
T4117 |
T4116 |
pobj |
which,of |
R2655 |
T4118 |
T4119 |
amod |
symmetric,contact |
R2656 |
T4119 |
T4115 |
dobj |
contact,makes |
R2657 |
T4120 |
T4119 |
prep |
with,contact |
R2658 |
T4121 |
T4122 |
det |
the,segment |
R2659 |
T4122 |
T4120 |
pobj |
segment,with |
R2660 |
T4123 |
T4124 |
npadvmod |
5,proximal |
R2661 |
T4124 |
T4122 |
amod |
proximal,segment |
R2662 |
T4125 |
T4123 |
punct |
′,5 |
R2663 |
T4126 |
T4124 |
punct |
-,proximal |
R2664 |
T4127 |
T4122 |
amod |
central,segment |
R2665 |
T4128 |
T4129 |
amod |
single,stranded |
R2666 |
T4129 |
T4122 |
amod |
stranded,segment |
R2667 |
T4130 |
T4129 |
punct |
-,stranded |
R2668 |
T4131 |
T4097 |
punct |
.,suggest |
R2669 |
T4133 |
T4134 |
nsubj |
This,predicts |
R2670 |
T4135 |
T4136 |
mark |
that,needs |
R2671 |
T4136 |
T4134 |
ccomp |
needs,predicts |
R2672 |
T4137 |
T4138 |
det |
the,segment |
R2673 |
T4138 |
T4136 |
nsubj |
segment,needs |
R2674 |
T4139 |
T4140 |
amod |
single,stranded |
R2675 |
T4140 |
T4138 |
amod |
stranded,segment |
R2676 |
T4141 |
T4140 |
punct |
-,stranded |
R2677 |
T4142 |
T4143 |
aux |
to,be |
R2678 |
T4143 |
T4136 |
xcomp |
be,needs |
R2679 |
T4144 |
T4143 |
prep |
of,be |
R2680 |
T4145 |
T4146 |
det |
a,length |
R2681 |
T4146 |
T4144 |
pobj |
length,of |
R2682 |
T4147 |
T4146 |
amod |
sufficient,length |
R2683 |
T4148 |
T4143 |
prep |
in,be |
R2684 |
T4149 |
T4148 |
pobj |
order,in |
R2685 |
T4150 |
T4151 |
aux |
to,accommodate |
R2686 |
T4151 |
T4149 |
acl |
accommodate,order |
R2687 |
T4152 |
T4153 |
det |
the,complex |
R2688 |
T4153 |
T4151 |
dobj |
complex,accommodate |
R2689 |
T4154 |
T4153 |
compound |
Mcm,complex |
R2690 |
T4155 |
T4134 |
punct |
.,predicts |
R2691 |
T4157 |
T4158 |
prep |
In,showed |
R2692 |
T4159 |
T4157 |
pobj |
fact,In |
R2693 |
T4160 |
T4158 |
punct |
", ",showed |
R2694 |
T4161 |
T4158 |
nsubj |
we,showed |
R2695 |
T4162 |
T4158 |
advmod |
previously,showed |
R2696 |
T4163 |
T4164 |
mark |
that,forms |
R2697 |
T4164 |
T4158 |
ccomp |
forms,showed |
R2698 |
T4165 |
T4166 |
det |
the,Mcm4 |
R2699 |
T4166 |
T4164 |
nsubj |
Mcm4,forms |
R2700 |
T4167 |
T4166 |
punct |
/,Mcm4 |
R2701 |
T4168 |
T4166 |
nummod |
6,Mcm4 |
R2702 |
T4169 |
T4166 |
punct |
/,Mcm4 |
R2703 |
T4170 |
T4166 |
nummod |
7,Mcm4 |
R2704 |
T4171 |
T4164 |
advmod |
mainly,forms |
R2705 |
T4172 |
T4173 |
det |
a,complex |
R2706 |
T4173 |
T4164 |
dobj |
complex,forms |
R2707 |
T4174 |
T4175 |
amod |
single,hexameric |
R2708 |
T4175 |
T4173 |
amod |
hexameric,complex |
R2709 |
T4176 |
T4173 |
prep |
on,complex |
R2710 |
T4177 |
T4176 |
pobj |
bubble,on |
R2711 |
T4178 |
T4177 |
punct |
-,bubble |
R2712 |
T4179 |
T4177 |
nummod |
20,bubble |
R2713 |
T4180 |
T4177 |
punct |
(,bubble |
R2714 |
T4181 |
T4182 |
det |
a,substrate |
R2715 |
T4182 |
T4177 |
appos |
substrate,bubble |
R2716 |
T4183 |
T4182 |
compound |
bubble,substrate |
R2717 |
T4184 |
T4182 |
prep |
with,substrate |
R2718 |
T4185 |
T4186 |
nummod |
20,nt |
R2719 |
T4186 |
T4187 |
npadvmod |
nt,long |
R2720 |
T4187 |
T4188 |
amod |
long,segment |
R2721 |
T4188 |
T4184 |
pobj |
segment,with |
R2722 |
T4189 |
T4188 |
amod |
central,segment |
R2723 |
T4190 |
T4191 |
amod |
single,stranded |
R2724 |
T4191 |
T4188 |
amod |
stranded,segment |
R2725 |
T4192 |
T4191 |
punct |
-,stranded |
R2726 |
T4193 |
T4173 |
punct |
),complex |
R2727 |
T4194 |
T4173 |
cc |
and,complex |
R2728 |
T4195 |
T4196 |
det |
a,complex |
R2729 |
T4196 |
T4173 |
conj |
complex,complex |
R2730 |
T4197 |
T4198 |
amod |
double,hexameric |
R2731 |
T4198 |
T4196 |
amod |
hexameric,complex |
R2732 |
T4199 |
T4196 |
prep |
on,complex |
R2733 |
T4200 |
T4201 |
nmod |
bubble,DNA |
R2734 |
T4201 |
T4199 |
pobj |
DNA,on |
R2735 |
T4202 |
T4200 |
punct |
-,bubble |
R2736 |
T4203 |
T4200 |
nummod |
60,bubble |
R2737 |
T4204 |
T4205 |
punct |
(,13 |
R2738 |
T4205 |
T4196 |
parataxis |
13,complex |
R2739 |
T4206 |
T4205 |
punct |
),13 |
R2740 |
T4207 |
T4158 |
punct |
.,showed |
R2741 |
T4209 |
T4210 |
prep |
In,constructed |
R2742 |
T4211 |
T4209 |
pobj |
order,In |
R2743 |
T4212 |
T4213 |
aux |
to,determine |
R2744 |
T4213 |
T4211 |
acl |
determine,order |
R2745 |
T4214 |
T4215 |
det |
the,requirement |
R2746 |
T4215 |
T4213 |
dobj |
requirement,determine |
R2747 |
T4216 |
T4215 |
amod |
minimum,requirement |
R2748 |
T4217 |
T4215 |
prep |
for,requirement |
R2749 |
T4218 |
T4219 |
amod |
double,hexamer |
R2750 |
T4219 |
T4221 |
compound |
hexamer,formation |
R2751 |
T4220 |
T4219 |
punct |
-,hexamer |
R2752 |
T4221 |
T4217 |
pobj |
formation,for |
R2753 |
T4222 |
T4210 |
punct |
", ",constructed |
R2754 |
T4223 |
T4224 |
det |
a,set |
R2755 |
T4224 |
T4210 |
nsubjpass |
set,constructed |
R2756 |
T4225 |
T4224 |
prep |
of,set |
R2757 |
T4226 |
T4227 |
amod |
synthetic,substrates |
R2758 |
T4227 |
T4225 |
pobj |
substrates,of |
R2759 |
T4228 |
T4229 |
npadvmod |
bubble,like |
R2760 |
T4229 |
T4227 |
amod |
like,substrates |
R2761 |
T4230 |
T4229 |
punct |
-,like |
R2762 |
T4231 |
T4227 |
punct |
(,substrates |
R2763 |
T4232 |
T4233 |
compound |
Bub,T10 |
R2764 |
T4233 |
T4227 |
appos |
T10,substrates |
R2765 |
T4234 |
T4233 |
punct |
-,T10 |
R2766 |
T4235 |
T4233 |
punct |
", ",T10 |
R2767 |
T4236 |
T4237 |
compound |
Bub,T20 |
R2768 |
T4237 |
T4233 |
conj |
T20,T10 |
R2769 |
T4238 |
T4237 |
punct |
-,T20 |
R2770 |
T4239 |
T4237 |
punct |
", ",T20 |
R2771 |
T4240 |
T4241 |
compound |
Bub,T30 |
R2772 |
T4241 |
T4237 |
conj |
T30,T20 |
R2773 |
T4242 |
T4241 |
punct |
-,T30 |
R2774 |
T4243 |
T4241 |
punct |
", ",T30 |
R2775 |
T4244 |
T4245 |
compound |
Bub,T40 |
R2776 |
T4245 |
T4241 |
conj |
T40,T30 |
R2777 |
T4246 |
T4245 |
punct |
-,T40 |
R2778 |
T4247 |
T4245 |
cc |
and,T40 |
R2779 |
T4248 |
T4249 |
compound |
Bub,T50 |
R2780 |
T4249 |
T4245 |
conj |
T50,T40 |
R2781 |
T4250 |
T4249 |
punct |
-,T50 |
R2782 |
T4251 |
T4227 |
punct |
),substrates |
R2783 |
T4252 |
T4253 |
dep |
that,differed |
R2784 |
T4253 |
T4227 |
relcl |
differed,substrates |
R2785 |
T4254 |
T4253 |
prep |
in,differed |
R2786 |
T4255 |
T4256 |
det |
the,length |
R2787 |
T4256 |
T4254 |
pobj |
length,in |
R2788 |
T4257 |
T4256 |
prep |
of,length |
R2789 |
T4258 |
T4259 |
det |
the,segment |
R2790 |
T4259 |
T4257 |
pobj |
segment,of |
R2791 |
T4260 |
T4259 |
amod |
central,segment |
R2792 |
T4261 |
T4259 |
amod |
unpaired,segment |
R2793 |
T4262 |
T4210 |
auxpass |
were,constructed |
R2794 |
T4263 |
T4210 |
punct |
", ",constructed |
R2795 |
T4264 |
T4210 |
cc |
and,constructed |
R2796 |
T4265 |
T4266 |
det |
the,activities |
R2797 |
T4266 |
T4270 |
nsubjpass |
activities,examined |
R2798 |
T4267 |
T4266 |
nmod |
binding,activities |
R2799 |
T4268 |
T4267 |
cc |
and,binding |
R2800 |
T4269 |
T4267 |
conj |
helicase,binding |
R2801 |
T4270 |
T4210 |
conj |
examined,constructed |
R2802 |
T4271 |
T4266 |
prep |
of,activities |
R2803 |
T4272 |
T4271 |
pobj |
Mcm4,of |
R2804 |
T4273 |
T4272 |
punct |
/,Mcm4 |
R2805 |
T4274 |
T4272 |
nummod |
6,Mcm4 |
R2806 |
T4275 |
T4272 |
punct |
/,Mcm4 |
R2807 |
T4276 |
T4272 |
nummod |
7,Mcm4 |
R2808 |
T4277 |
T4266 |
prep |
on,activities |
R2809 |
T4278 |
T4279 |
det |
these,substrates |
R2810 |
T4279 |
T4277 |
pobj |
substrates,on |
R2811 |
T4280 |
T4270 |
auxpass |
were,examined |
R2812 |
T4281 |
T4210 |
punct |
.,constructed |
R2813 |
T4283 |
T4284 |
nsubjpass |
Mcm4,incubated |
R2814 |
T4285 |
T4283 |
punct |
/,Mcm4 |
R2815 |
T4286 |
T4283 |
nummod |
6,Mcm4 |
R2816 |
T4287 |
T4283 |
punct |
/,Mcm4 |
R2817 |
T4288 |
T4283 |
nummod |
7,Mcm4 |
R2818 |
T4289 |
T4284 |
auxpass |
was,incubated |
R2819 |
T4290 |
T4284 |
prep |
with,incubated |
R2820 |
T4291 |
T4292 |
det |
a,substrate |
R2821 |
T4292 |
T4290 |
pobj |
substrate,with |
R2822 |
T4293 |
T4292 |
amod |
radiolabeled,substrate |
R2823 |
T4294 |
T4292 |
amod |
synthetic,substrate |
R2824 |
T4295 |
T4292 |
compound |
bubble,substrate |
R2825 |
T4296 |
T4284 |
prep |
in,incubated |
R2826 |
T4297 |
T4298 |
det |
the,presence |
R2827 |
T4298 |
T4296 |
pobj |
presence,in |
R2828 |
T4299 |
T4298 |
prep |
of,presence |
R2829 |
T4300 |
T4301 |
nummod |
0.5,mM |
R2830 |
T4301 |
T4302 |
nmod |
mM,S |
R2831 |
T4302 |
T4299 |
pobj |
S,of |
R2832 |
T4303 |
T4302 |
nmod |
ATP,S |
R2833 |
T4304 |
T4302 |
punct |
-,S |
R2834 |
T4305 |
T4302 |
punct |
γ,S |
R2835 |
T4306 |
T4302 |
punct |
-,S |
R2836 |
T4307 |
T4308 |
aux |
to,allow |
R2837 |
T4308 |
T4284 |
advcl |
allow,incubated |
R2838 |
T4309 |
T4310 |
compound |
complex,formation |
R2839 |
T4310 |
T4308 |
dobj |
formation,allow |
R2840 |
T4311 |
T4284 |
punct |
.,incubated |
R2841 |
T4313 |
T4314 |
det |
A,half |
R2842 |
T4314 |
T4315 |
nsubjpass |
half,analyzed |
R2843 |
T4316 |
T4314 |
prep |
of,half |
R2844 |
T4317 |
T4318 |
det |
these,mixtures |
R2845 |
T4318 |
T4316 |
pobj |
mixtures,of |
R2846 |
T4319 |
T4318 |
compound |
reaction,mixtures |
R2847 |
T4320 |
T4315 |
auxpass |
were,analyzed |
R2848 |
T4321 |
T4315 |
prep |
for,analyzed |
R2849 |
T4322 |
T4323 |
compound |
DNA,binding |
R2850 |
T4323 |
T4321 |
pobj |
binding,for |
R2851 |
T4324 |
T4315 |
prep |
in,analyzed |
R2852 |
T4325 |
T4326 |
compound |
gel,shift |
R2853 |
T4326 |
T4327 |
compound |
shift,assays |
R2854 |
T4327 |
T4324 |
pobj |
assays,in |
R2855 |
T4328 |
T4329 |
punct |
(,2A |
R2856 |
T4329 |
T4315 |
parataxis |
2A,analyzed |
R2857 |
T4330 |
T4329 |
compound |
Figure,2A |
R2858 |
T4331 |
T4329 |
punct |
),2A |
R2859 |
T4332 |
T4315 |
punct |
", ",analyzed |
R2860 |
T4333 |
T4315 |
cc |
and,analyzed |
R2861 |
T4334 |
T4335 |
det |
the,remainder |
R2862 |
T4335 |
T4336 |
nsubjpass |
remainder,incubated |
R2863 |
T4336 |
T4315 |
conj |
incubated,analyzed |
R2864 |
T4337 |
T4336 |
auxpass |
was,incubated |
R2865 |
T4338 |
T4336 |
advmod |
further,incubated |
R2866 |
T4339 |
T4336 |
prep |
in,incubated |
R2867 |
T4340 |
T4341 |
det |
the,presence |
R2868 |
T4341 |
T4339 |
pobj |
presence,in |
R2869 |
T4342 |
T4341 |
prep |
of,presence |
R2870 |
T4343 |
T4344 |
nummod |
10,mM |
R2871 |
T4344 |
T4345 |
compound |
mM,ATP |
R2872 |
T4345 |
T4342 |
pobj |
ATP,of |
R2873 |
T4346 |
T4347 |
aux |
to,measure |
R2874 |
T4347 |
T4336 |
advcl |
measure,incubated |
R2875 |
T4348 |
T4349 |
compound |
DNA,helicase |
R2876 |
T4349 |
T4350 |
compound |
helicase,activity |
R2877 |
T4350 |
T4347 |
dobj |
activity,measure |
R2878 |
T4351 |
T4352 |
punct |
(,2B |
R2879 |
T4352 |
T4347 |
parataxis |
2B,measure |
R2880 |
T4353 |
T4352 |
compound |
Figure,2B |
R2881 |
T4354 |
T4352 |
punct |
),2B |
R2882 |
T4355 |
T4336 |
punct |
.,incubated |
R2883 |
T4357 |
T4358 |
nsubj |
Bub,generated |
R2884 |
T4359 |
T4357 |
punct |
-,Bub |
R2885 |
T4360 |
T4357 |
nummod |
10,Bub |
R2886 |
T4361 |
T4362 |
advmod |
only,level |
R2887 |
T4362 |
T4358 |
dobj |
level,generated |
R2888 |
T4363 |
T4362 |
det |
a,level |
R2889 |
T4364 |
T4362 |
amod |
low,level |
R2890 |
T4365 |
T4362 |
prep |
of,level |
R2891 |
T4366 |
T4365 |
pobj |
complexes,of |
R2892 |
T4367 |
T4366 |
prep |
with,complexes |
R2893 |
T4368 |
T4367 |
pobj |
Mcm4,with |
R2894 |
T4369 |
T4368 |
punct |
/,Mcm4 |
R2895 |
T4370 |
T4368 |
nummod |
6,Mcm4 |
R2896 |
T4371 |
T4368 |
punct |
/,Mcm4 |
R2897 |
T4372 |
T4368 |
nummod |
7,Mcm4 |
R2898 |
T4373 |
T4358 |
punct |
", ",generated |
R2899 |
T4374 |
T4358 |
cc |
and,generated |
R2900 |
T4375 |
T4376 |
nsubj |
Bub,generated |
R2901 |
T4376 |
T4358 |
conj |
generated,generated |
R2902 |
T4377 |
T4375 |
punct |
-,Bub |
R2903 |
T4378 |
T4375 |
nummod |
20,Bub |
R2904 |
T4379 |
T4376 |
advmod |
primarily,generated |
R2905 |
T4380 |
T4381 |
det |
a,form |
R2906 |
T4381 |
T4376 |
dobj |
form,generated |
R2907 |
T4382 |
T4381 |
amod |
single,form |
R2908 |
T4383 |
T4384 |
npadvmod |
mobility,shifted |
R2909 |
T4384 |
T4381 |
amod |
shifted,form |
R2910 |
T4385 |
T4384 |
punct |
-,shifted |
R2911 |
T4386 |
T4381 |
punct |
", ",form |
R2912 |
T4387 |
T4388 |
dep |
which,contain |
R2913 |
T4388 |
T4381 |
relcl |
contain,form |
R2914 |
T4389 |
T4388 |
aux |
may,contain |
R2915 |
T4390 |
T4391 |
det |
a,hexamer |
R2916 |
T4391 |
T4388 |
dobj |
hexamer,contain |
R2917 |
T4392 |
T4391 |
amod |
single,hexamer |
R2918 |
T4393 |
T4391 |
prep |
of,hexamer |
R2919 |
T4394 |
T4393 |
pobj |
Mcm4,of |
R2920 |
T4395 |
T4394 |
punct |
/,Mcm4 |
R2921 |
T4396 |
T4394 |
nummod |
6,Mcm4 |
R2922 |
T4397 |
T4394 |
punct |
/,Mcm4 |
R2923 |
T4398 |
T4394 |
nummod |
7,Mcm4 |
R2924 |
T4399 |
T4376 |
punct |
.,generated |
R2925 |
T4401 |
T4402 |
prep |
On,generated |
R2926 |
T4403 |
T4401 |
pobj |
Bub,On |
R2927 |
T4404 |
T4403 |
punct |
-,Bub |
R2928 |
T4405 |
T4403 |
nummod |
30,Bub |
R2929 |
T4406 |
T4402 |
punct |
", ",generated |
R2930 |
T4407 |
T4408 |
amod |
significant,amount |
R2931 |
T4408 |
T4402 |
nsubjpass |
amount,generated |
R2932 |
T4409 |
T4408 |
prep |
of,amount |
R2933 |
T4410 |
T4409 |
pobj |
complexes,of |
R2934 |
T4411 |
T4410 |
acl |
containing,complexes |
R2935 |
T4412 |
T4413 |
det |
a,hexamer |
R2936 |
T4413 |
T4411 |
dobj |
hexamer,containing |
R2937 |
T4414 |
T4413 |
amod |
double,hexamer |
R2938 |
T4415 |
T4402 |
auxpass |
were,generated |
R2939 |
T4416 |
T4402 |
prep |
in,generated |
R2940 |
T4417 |
T4416 |
pobj |
addition,in |
R2941 |
T4418 |
T4417 |
prep |
to,addition |
R2942 |
T4419 |
T4418 |
pobj |
those,to |
R2943 |
T4420 |
T4419 |
acl |
containing,those |
R2944 |
T4421 |
T4422 |
det |
a,hexamer |
R2945 |
T4422 |
T4420 |
dobj |
hexamer,containing |
R2946 |
T4423 |
T4422 |
amod |
single,hexamer |
R2947 |
T4424 |
T4425 |
punct |
(,2A |
R2948 |
T4425 |
T4402 |
parataxis |
2A,generated |
R2949 |
T4426 |
T4425 |
compound |
Figure,2A |
R2950 |
T4427 |
T4425 |
punct |
),2A |
R2951 |
T4428 |
T4429 |
punct |
(,21 |
R2952 |
T4429 |
T4402 |
parataxis |
21,generated |
R2953 |
T4430 |
T4429 |
nummod |
13,21 |
R2954 |
T4431 |
T4429 |
punct |
",",21 |
R2955 |
T4432 |
T4429 |
punct |
),21 |
R2956 |
T4433 |
T4402 |
punct |
.,generated |
R2957 |
T4435 |
T4436 |
det |
The,amounts |
R2958 |
T4436 |
T4437 |
nsubj |
amounts,increased |
R2959 |
T4438 |
T4436 |
prep |
of,amounts |
R2960 |
T4439 |
T4440 |
amod |
double,hexamer |
R2961 |
T4440 |
T4441 |
compound |
hexamer,complexes |
R2962 |
T4441 |
T4438 |
pobj |
complexes,of |
R2963 |
T4442 |
T4437 |
prep |
on,increased |
R2964 |
T4443 |
T4444 |
compound |
Bub,T40 |
R2965 |
T4444 |
T4442 |
pobj |
T40,on |
R2966 |
T4445 |
T4444 |
punct |
-,T40 |
R2967 |
T4446 |
T4444 |
cc |
and,T40 |
R2968 |
T4447 |
T4448 |
compound |
Bub,T50 |
R2969 |
T4448 |
T4444 |
conj |
T50,T40 |
R2970 |
T4449 |
T4448 |
punct |
-,T50 |
R2971 |
T4450 |
T4437 |
prep |
with,increased |
R2972 |
T4451 |
T4452 |
amod |
concomitant,decrease |
R2973 |
T4452 |
T4450 |
pobj |
decrease,with |
R2974 |
T4453 |
T4452 |
prep |
of,decrease |
R2975 |
T4454 |
T4455 |
amod |
single,hexamer |
R2976 |
T4455 |
T4456 |
compound |
hexamer,complexes |
R2977 |
T4456 |
T4453 |
pobj |
complexes,of |
R2978 |
T4457 |
T4458 |
punct |
(,2A |
R2979 |
T4458 |
T4437 |
parataxis |
2A,increased |
R2980 |
T4459 |
T4458 |
compound |
Figure,2A |
R2981 |
T4460 |
T4458 |
punct |
),2A |
R2982 |
T4461 |
T4437 |
punct |
.,increased |
R2983 |
T4463 |
T4464 |
det |
The,results |
R2984 |
T4464 |
T4465 |
nsubj |
results,indicate |
R2985 |
T4466 |
T4467 |
mark |
that,required |
R2986 |
T4467 |
T4465 |
ccomp |
required,indicate |
R2987 |
T4468 |
T4469 |
det |
a,segment |
R2988 |
T4469 |
T4467 |
nsubjpass |
segment,required |
R2989 |
T4470 |
T4471 |
amod |
single,stranded |
R2990 |
T4471 |
T4469 |
amod |
stranded,segment |
R2991 |
T4472 |
T4471 |
punct |
-,stranded |
R2992 |
T4473 |
T4469 |
prep |
of,segment |
R2993 |
T4474 |
T4475 |
advmod |
at,least |
R2994 |
T4475 |
T4476 |
advmod |
least,40 |
R2995 |
T4476 |
T4477 |
nummod |
40,nt |
R2996 |
T4477 |
T4473 |
pobj |
nt,of |
R2997 |
T4478 |
T4477 |
amod |
long,nt |
R2998 |
T4479 |
T4467 |
auxpass |
is,required |
R2999 |
T4480 |
T4467 |
prep |
for,required |
R3000 |
T4481 |
T4482 |
amod |
efficient,loading |
R3001 |
T4482 |
T4480 |
pobj |
loading,for |
R3002 |
T4483 |
T4482 |
prep |
of,loading |
R3003 |
T4484 |
T4485 |
det |
the,helicase |
R3004 |
T4485 |
T4483 |
pobj |
helicase,of |
R3005 |
T4486 |
T4487 |
amod |
double,hexameric |
R3006 |
T4487 |
T4485 |
amod |
hexameric,helicase |
R3007 |
T4488 |
T4487 |
punct |
-,hexameric |
R3008 |
T4489 |
T4485 |
compound |
Mcm,helicase |
R3009 |
T4490 |
T4482 |
prep |
on,loading |
R3010 |
T4491 |
T4492 |
det |
a,substrate |
R3011 |
T4492 |
T4490 |
pobj |
substrate,on |
R3012 |
T4493 |
T4492 |
compound |
bubble,substrate |
R3013 |
T4494 |
T4465 |
punct |
.,indicate |
R3014 |
T4496 |
T4497 |
prep |
In,show |
R3015 |
T4498 |
T4499 |
compound |
DNA,helicase |
R3016 |
T4499 |
T4500 |
compound |
helicase,assays |
R3017 |
T4500 |
T4496 |
pobj |
assays,In |
R3018 |
T4501 |
T4497 |
punct |
", ",show |
R3019 |
T4502 |
T4503 |
nmod |
Mcm4,complex |
R3020 |
T4503 |
T4497 |
nsubj |
complex,show |
R3021 |
T4504 |
T4502 |
punct |
/,Mcm4 |
R3022 |
T4505 |
T4502 |
nummod |
6,Mcm4 |
R3023 |
T4506 |
T4502 |
punct |
/,Mcm4 |
R3024 |
T4507 |
T4502 |
nummod |
7,Mcm4 |
R3025 |
T4508 |
T4497 |
aux |
did,show |
R3026 |
T4509 |
T4497 |
neg |
not,show |
R3027 |
T4510 |
T4511 |
compound |
helicase,activity |
R3028 |
T4511 |
T4497 |
dobj |
activity,show |
R3029 |
T4512 |
T4497 |
prep |
on,show |
R3030 |
T4513 |
T4514 |
preconj |
either,Bub |
R3031 |
T4514 |
T4515 |
nmod |
Bub,substrate |
R3032 |
T4515 |
T4512 |
pobj |
substrate,on |
R3033 |
T4516 |
T4514 |
punct |
-,Bub |
R3034 |
T4517 |
T4514 |
nummod |
10,Bub |
R3035 |
T4518 |
T4514 |
cc |
or,Bub |
R3036 |
T4519 |
T4514 |
conj |
Bub,Bub |
R3037 |
T4520 |
T4519 |
punct |
-,Bub |
R3038 |
T4521 |
T4519 |
nummod |
20,Bub |
R3039 |
T4522 |
T4497 |
punct |
.,show |
R3040 |
T4524 |
T4525 |
det |
The,efficiency |
R3041 |
T4525 |
T4526 |
nsubj |
efficiency,improved |
R3042 |
T4527 |
T4525 |
prep |
of,efficiency |
R3043 |
T4528 |
T4527 |
pobj |
displacement,of |
R3044 |
T4529 |
T4526 |
advmod |
slightly,improved |
R3045 |
T4530 |
T4531 |
mark |
as,increased |
R3046 |
T4531 |
T4526 |
advcl |
increased,improved |
R3047 |
T4532 |
T4533 |
det |
the,length |
R3048 |
T4533 |
T4531 |
nsubj |
length,increased |
R3049 |
T4534 |
T4533 |
prep |
of,length |
R3050 |
T4535 |
T4536 |
det |
the,segment |
R3051 |
T4536 |
T4534 |
pobj |
segment,of |
R3052 |
T4537 |
T4538 |
amod |
single,stranded |
R3053 |
T4538 |
T4536 |
amod |
stranded,segment |
R3054 |
T4539 |
T4538 |
punct |
-,stranded |
R3055 |
T4540 |
T4541 |
quantmod |
up,30 |
R3056 |
T4541 |
T4543 |
nummod |
30,nt |
R3057 |
T4542 |
T4541 |
quantmod |
to,30 |
R3058 |
T4543 |
T4531 |
npadvmod |
nt,increased |
R3059 |
T4544 |
T4526 |
punct |
.,improved |
R3060 |
T4546 |
T4547 |
prep |
On,observed |
R3061 |
T4548 |
T4549 |
compound |
Bub,T40 |
R3062 |
T4549 |
T4546 |
pobj |
T40,On |
R3063 |
T4550 |
T4549 |
punct |
-,T40 |
R3064 |
T4551 |
T4549 |
cc |
and,T40 |
R3065 |
T4552 |
T4553 |
compound |
Bub,T50 |
R3066 |
T4553 |
T4549 |
conj |
T50,T40 |
R3067 |
T4554 |
T4553 |
punct |
-,T50 |
R3068 |
T4555 |
T4547 |
punct |
", ",observed |
R3069 |
T4556 |
T4547 |
prep |
on,observed |
R3070 |
T4557 |
T4558 |
det |
the,hand |
R3071 |
T4558 |
T4556 |
pobj |
hand,on |
R3072 |
T4559 |
T4558 |
amod |
other,hand |
R3073 |
T4560 |
T4547 |
punct |
", ",observed |
R3074 |
T4561 |
T4562 |
amod |
significant,displacement |
R3075 |
T4562 |
T4547 |
nsubjpass |
displacement,observed |
R3076 |
T4563 |
T4547 |
auxpass |
was,observed |
R3077 |
T4564 |
T4547 |
punct |
", ",observed |
R3078 |
T4565 |
T4547 |
advcl |
indicating,observed |
R3079 |
T4566 |
T4567 |
mark |
that,required |
R3080 |
T4567 |
T4565 |
ccomp |
required,indicating |
R3081 |
T4568 |
T4569 |
det |
a,segment |
R3082 |
T4569 |
T4567 |
nsubjpass |
segment,required |
R3083 |
T4570 |
T4571 |
amod |
single,stranded |
R3084 |
T4571 |
T4569 |
amod |
stranded,segment |
R3085 |
T4572 |
T4571 |
punct |
-,stranded |
R3086 |
T4573 |
T4569 |
prep |
of,segment |
R3087 |
T4574 |
T4575 |
advmod |
at,least |
R3088 |
T4575 |
T4576 |
advmod |
least,40 |
R3089 |
T4576 |
T4577 |
nummod |
40,nt |
R3090 |
T4577 |
T4573 |
pobj |
nt,of |
R3091 |
T4578 |
T4577 |
amod |
long,nt |
R3092 |
T4579 |
T4567 |
auxpass |
is,required |
R3093 |
T4580 |
T4567 |
prep |
for,required |
R3094 |
T4581 |
T4582 |
amod |
efficient,actions |
R3095 |
T4582 |
T4580 |
pobj |
actions,for |
R3096 |
T4583 |
T4582 |
compound |
helicase,actions |
R3097 |
T4584 |
T4582 |
prep |
on,actions |
R3098 |
T4585 |
T4586 |
compound |
bubble,substrates |
R3099 |
T4586 |
T4584 |
pobj |
substrates,on |
R3100 |
T4587 |
T4588 |
punct |
(,2B |
R3101 |
T4588 |
T4567 |
parataxis |
2B,required |
R3102 |
T4589 |
T4588 |
compound |
Figure,2B |
R3103 |
T4590 |
T4588 |
punct |
),2B |
R3104 |
T4591 |
T4547 |
punct |
.,observed |
R3105 |
T4593 |
T4594 |
advcl |
Taken,are |
R3106 |
T4595 |
T4593 |
advmod |
together,Taken |
R3107 |
T4596 |
T4594 |
punct |
", ",are |
R3108 |
T4597 |
T4598 |
det |
the,results |
R3109 |
T4598 |
T4594 |
nsubj |
results,are |
R3110 |
T4599 |
T4598 |
amod |
above,results |
R3111 |
T4600 |
T4594 |
acomp |
consistent,are |
R3112 |
T4601 |
T4600 |
prep |
with,consistent |
R3113 |
T4602 |
T4603 |
det |
the,notion |
R3114 |
T4603 |
T4601 |
pobj |
notion,with |
R3115 |
T4604 |
T4605 |
mark |
that,unwinds |
R3116 |
T4605 |
T4603 |
acl |
unwinds,notion |
R3117 |
T4606 |
T4607 |
det |
the,complex |
R3118 |
T4607 |
T4605 |
nsubj |
complex,unwinds |
R3119 |
T4608 |
T4607 |
nmod |
Mcm4,complex |
R3120 |
T4609 |
T4608 |
punct |
/,Mcm4 |
R3121 |
T4610 |
T4608 |
nummod |
6,Mcm4 |
R3122 |
T4611 |
T4608 |
punct |
/,Mcm4 |
R3123 |
T4612 |
T4608 |
nummod |
7,Mcm4 |
R3124 |
T4613 |
T4607 |
punct |
", ",complex |
R3125 |
T4614 |
T4607 |
acl |
loaded,complex |
R3126 |
T4615 |
T4614 |
prep |
onto,loaded |
R3127 |
T4616 |
T4615 |
pobj |
DNA,onto |
R3128 |
T4617 |
T4614 |
prep |
as,loaded |
R3129 |
T4618 |
T4619 |
det |
a,complex |
R3130 |
T4619 |
T4617 |
pobj |
complex,as |
R3131 |
T4620 |
T4621 |
amod |
double,hexameric |
R3132 |
T4621 |
T4619 |
amod |
hexameric,complex |
R3133 |
T4622 |
T4605 |
punct |
", ",unwinds |
R3134 |
T4623 |
T4605 |
advmod |
efficiently,unwinds |
R3135 |
T4624 |
T4625 |
det |
the,region |
R3136 |
T4625 |
T4605 |
dobj |
region,unwinds |
R3137 |
T4626 |
T4625 |
compound |
duplex,region |
R3138 |
T4627 |
T4625 |
prep |
of,region |
R3139 |
T4628 |
T4629 |
det |
the,DNA |
R3140 |
T4629 |
T4627 |
pobj |
DNA,of |
R3141 |
T4630 |
T4629 |
compound |
substrate,DNA |
R3142 |
T4631 |
T4594 |
punct |
.,are |
R3145 |
T4737 |
T4738 |
det |
Both,strands |
R3146 |
T4738 |
T4739 |
nsubjpass |
strands,required |
R3147 |
T4740 |
T4738 |
prep |
of,strands |
R3148 |
T4741 |
T4742 |
npadvmod |
thymine,rich |
R3149 |
T4742 |
T4744 |
amod |
rich,segments |
R3150 |
T4743 |
T4742 |
punct |
-,rich |
R3151 |
T4744 |
T4740 |
pobj |
segments,of |
R3152 |
T4745 |
T4746 |
amod |
single,stranded |
R3153 |
T4746 |
T4744 |
amod |
stranded,segments |
R3154 |
T4747 |
T4746 |
punct |
-,stranded |
R3155 |
T4748 |
T4739 |
auxpass |
are,required |
R3156 |
T4749 |
T4739 |
prep |
for,required |
R3157 |
T4750 |
T4751 |
amod |
efficient,unwinding |
R3158 |
T4751 |
T4749 |
pobj |
unwinding,for |
R3159 |
T4752 |
T4751 |
prep |
of,unwinding |
R3160 |
T4753 |
T4754 |
compound |
bubble,DNA |
R3161 |
T4754 |
T4752 |
pobj |
DNA,of |
R3162 |
T4755 |
T4751 |
prep |
by,unwinding |
R3163 |
T4756 |
T4755 |
pobj |
Mcm4,by |
R3164 |
T4757 |
T4756 |
punct |
/,Mcm4 |
R3165 |
T4758 |
T4756 |
nummod |
6,Mcm4 |
R3166 |
T4759 |
T4756 |
punct |
/,Mcm4 |
R3167 |
T4760 |
T4756 |
nummod |
7,Mcm4 |
R3168 |
T4762 |
T4763 |
amod |
Symmetric,binding |
R3169 |
T4763 |
T4764 |
nsubj |
binding,suggests |
R3170 |
T4765 |
T4763 |
prep |
of,binding |
R3171 |
T4766 |
T4767 |
det |
the,hexamer |
R3172 |
T4767 |
T4765 |
pobj |
hexamer,of |
R3173 |
T4768 |
T4767 |
nmod |
Mcm4,hexamer |
R3174 |
T4769 |
T4768 |
punct |
/,Mcm4 |
R3175 |
T4770 |
T4768 |
nummod |
6,Mcm4 |
R3176 |
T4771 |
T4768 |
punct |
/,Mcm4 |
R3177 |
T4772 |
T4768 |
nummod |
7,Mcm4 |
R3178 |
T4773 |
T4767 |
amod |
double,hexamer |
R3179 |
T4774 |
T4763 |
prep |
to,binding |
R3180 |
T4775 |
T4774 |
pobj |
bubble,to |
R3181 |
T4776 |
T4777 |
mark |
that,catalyzes |
R3182 |
T4777 |
T4764 |
ccomp |
catalyzes,suggests |
R3183 |
T4778 |
T4779 |
det |
each,hexamer |
R3184 |
T4779 |
T4777 |
nsubj |
hexamer,catalyzes |
R3185 |
T4780 |
T4777 |
dobj |
unwinding,catalyzes |
R3186 |
T4781 |
T4780 |
prep |
of,unwinding |
R3187 |
T4782 |
T4781 |
pobj |
one,of |
R3188 |
T4783 |
T4782 |
prep |
of,one |
R3189 |
T4784 |
T4785 |
det |
the,segments |
R3190 |
T4785 |
T4783 |
pobj |
segments,of |
R3191 |
T4786 |
T4785 |
nummod |
two,segments |
R3192 |
T4787 |
T4785 |
compound |
duplex,segments |
R3193 |
T4788 |
T4764 |
punct |
.,suggests |
R3194 |
T4790 |
T4791 |
nsubj |
We,asked |
R3195 |
T4792 |
T4793 |
mark |
whether,required |
R3196 |
T4793 |
T4791 |
ccomp |
required,asked |
R3197 |
T4794 |
T4793 |
nsubjpass |
activation,required |
R3198 |
T4795 |
T4794 |
prep |
of,activation |
R3199 |
T4796 |
T4797 |
det |
both,hexamers |
R3200 |
T4797 |
T4795 |
pobj |
hexamers,of |
R3201 |
T4798 |
T4793 |
auxpass |
is,required |
R3202 |
T4799 |
T4793 |
prep |
for,required |
R3203 |
T4800 |
T4799 |
pobj |
unwinding,for |
R3204 |
T4801 |
T4800 |
prep |
of,unwinding |
R3205 |
T4802 |
T4803 |
det |
the,substrate |
R3206 |
T4803 |
T4801 |
pobj |
substrate,of |
R3207 |
T4804 |
T4803 |
compound |
bubble,substrate |
R3208 |
T4805 |
T4791 |
punct |
.,asked |
R3209 |
T4807 |
T4808 |
det |
The,substrate |
R3210 |
T4808 |
T4811 |
nsubj |
substrate,contains |
R3211 |
T4809 |
T4808 |
amod |
preferred,substrate |
R3212 |
T4810 |
T4808 |
compound |
bubble,substrate |
R3213 |
T4812 |
T4813 |
dep |
which,unwound |
R3214 |
T4813 |
T4808 |
relcl |
unwound,substrate |
R3215 |
T4814 |
T4813 |
auxpass |
is,unwound |
R3216 |
T4815 |
T4813 |
advmod |
efficiently,unwound |
R3217 |
T4816 |
T4813 |
agent |
by,unwound |
R3218 |
T4817 |
T4816 |
pobj |
Mcm4,by |
R3219 |
T4818 |
T4817 |
punct |
/,Mcm4 |
R3220 |
T4819 |
T4817 |
nummod |
6,Mcm4 |
R3221 |
T4820 |
T4817 |
punct |
/,Mcm4 |
R3222 |
T4821 |
T4817 |
nummod |
7,Mcm4 |
R3223 |
T4822 |
T4823 |
compound |
thymine,stretches |
R3224 |
T4823 |
T4811 |
dobj |
stretches,contains |
R3225 |
T4824 |
T4823 |
prep |
on,stretches |
R3226 |
T4825 |
T4826 |
det |
both,strands |
R3227 |
T4826 |
T4824 |
pobj |
strands,on |
R3228 |
T4827 |
T4826 |
prep |
of,strands |
R3229 |
T4828 |
T4829 |
det |
the,segment |
R3230 |
T4829 |
T4827 |
pobj |
segment,of |
R3231 |
T4830 |
T4831 |
amod |
single,stranded |
R3232 |
T4831 |
T4829 |
amod |
stranded,segment |
R3233 |
T4832 |
T4831 |
punct |
-,stranded |
R3234 |
T4833 |
T4811 |
punct |
.,contains |
R3235 |
T4835 |
T4836 |
nsubj |
We,constructed |
R3236 |
T4837 |
T4838 |
det |
a,hetero-bubble |
R3237 |
T4838 |
T4836 |
dobj |
hetero-bubble,constructed |
R3238 |
T4839 |
T4838 |
punct |
(,hetero-bubble |
R3239 |
T4840 |
T4841 |
compound |
Bub66,G |
R3240 |
T4841 |
T4838 |
appos |
G,hetero-bubble |
R3241 |
T4842 |
T4841 |
punct |
/,G |
R3242 |
T4843 |
T4841 |
compound |
T,G |
R3243 |
T4844 |
T4841 |
punct |
–,G |
R3244 |
T4845 |
T4841 |
punct |
-,G |
R3245 |
T4846 |
T4841 |
amod |
rich,G |
R3246 |
T4847 |
T4838 |
punct |
),hetero-bubble |
R3247 |
T4848 |
T4849 |
prep |
in,is |
R3248 |
T4849 |
T4838 |
relcl |
is,hetero-bubble |
R3249 |
T4850 |
T4848 |
pobj |
which,in |
R3250 |
T4851 |
T4852 |
nummod |
one,strand |
R3251 |
T4852 |
T4849 |
nsubj |
strand,is |
R3252 |
T4853 |
T4854 |
npadvmod |
T,rich |
R3253 |
T4854 |
T4849 |
acomp |
rich,is |
R3254 |
T4855 |
T4854 |
punct |
-,rich |
R3255 |
T4856 |
T4857 |
punct |
(,same |
R3256 |
T4857 |
T4854 |
parataxis |
same,rich |
R3257 |
T4858 |
T4857 |
prep |
as,same |
R3258 |
T4859 |
T4860 |
compound |
Bub66,T |
R3259 |
T4860 |
T4858 |
pobj |
T,as |
R3260 |
T4861 |
T4860 |
punct |
/,T |
R3261 |
T4862 |
T4860 |
punct |
-,T |
R3262 |
T4863 |
T4860 |
amod |
rich,T |
R3263 |
T4864 |
T4857 |
punct |
),same |
R3264 |
T4865 |
T4849 |
cc |
and,is |
R3265 |
T4866 |
T4867 |
det |
the,strand |
R3266 |
T4867 |
T4869 |
nsubj |
strand,is |
R3267 |
T4868 |
T4867 |
amod |
other,strand |
R3268 |
T4869 |
T4849 |
conj |
is,is |
R3269 |
T4870 |
T4871 |
npadvmod |
G,rich |
R3270 |
T4871 |
T4869 |
acomp |
rich,is |
R3271 |
T4872 |
T4871 |
punct |
-,rich |
R3272 |
T4873 |
T4874 |
punct |
(,same |
R3273 |
T4874 |
T4871 |
parataxis |
same,rich |
R3274 |
T4875 |
T4874 |
prep |
as,same |
R3275 |
T4876 |
T4877 |
compound |
Bub66,G |
R3276 |
T4877 |
T4875 |
pobj |
G,as |
R3277 |
T4878 |
T4877 |
punct |
/,G |
R3278 |
T4879 |
T4877 |
punct |
-,G |
R3279 |
T4880 |
T4877 |
amod |
rich,G |
R3280 |
T4881 |
T4874 |
punct |
),same |
R3281 |
T4882 |
T4883 |
punct |
(,13 |
R3282 |
T4883 |
T4871 |
parataxis |
13,rich |
R3283 |
T4884 |
T4883 |
punct |
),13 |
R3284 |
T4885 |
T4836 |
punct |
", ",constructed |
R3285 |
T4886 |
T4836 |
cc |
and,constructed |
R3286 |
T4887 |
T4888 |
compound |
helicase,assays |
R3287 |
T4888 |
T4889 |
nsubjpass |
assays,conducted |
R3288 |
T4889 |
T4836 |
conj |
conducted,constructed |
R3289 |
T4890 |
T4889 |
auxpass |
were,conducted |
R3290 |
T4891 |
T4889 |
prep |
with,conducted |
R3291 |
T4892 |
T4893 |
amod |
increasing,amount |
R3292 |
T4893 |
T4891 |
pobj |
amount,with |
R3293 |
T4894 |
T4893 |
prep |
of,amount |
R3294 |
T4895 |
T4894 |
pobj |
Mcm4,of |
R3295 |
T4896 |
T4895 |
punct |
/,Mcm4 |
R3296 |
T4897 |
T4895 |
nummod |
6,Mcm4 |
R3297 |
T4898 |
T4895 |
punct |
/,Mcm4 |
R3298 |
T4899 |
T4895 |
nummod |
7,Mcm4 |
R3299 |
T4900 |
T4889 |
punct |
.,conducted |
R3300 |
T4902 |
T4903 |
advmod |
Only,unwinding |
R3301 |
T4903 |
T4905 |
nsubjpass |
unwinding,detected |
R3302 |
T4904 |
T4903 |
amod |
weak,unwinding |
R3303 |
T4906 |
T4905 |
auxpass |
was,detected |
R3304 |
T4907 |
T4905 |
prep |
on,detected |
R3305 |
T4908 |
T4909 |
det |
this,substrate |
R3306 |
T4909 |
T4907 |
pobj |
substrate,on |
R3307 |
T4910 |
T4905 |
prep |
compared,detected |
R3308 |
T4911 |
T4910 |
prep |
to,compared |
R3309 |
T4912 |
T4913 |
compound |
Bub66,T |
R3310 |
T4913 |
T4911 |
pobj |
T,to |
R3311 |
T4914 |
T4913 |
punct |
/,T |
R3312 |
T4915 |
T4913 |
punct |
-,T |
R3313 |
T4916 |
T4913 |
amod |
rich,T |
R3314 |
T4917 |
T4918 |
punct |
(,3A |
R3315 |
T4918 |
T4905 |
parataxis |
3A,detected |
R3316 |
T4919 |
T4918 |
compound |
Figure,3A |
R3317 |
T4920 |
T4918 |
punct |
),3A |
R3318 |
T4921 |
T4905 |
punct |
.,detected |
R3319 |
T4923 |
T4924 |
mark |
Since,bind |
R3320 |
T4924 |
T4931 |
advcl |
bind,is |
R3321 |
T4925 |
T4924 |
nsubj |
Mcm4,bind |
R3322 |
T4926 |
T4925 |
punct |
/,Mcm4 |
R3323 |
T4927 |
T4925 |
nummod |
6,Mcm4 |
R3324 |
T4928 |
T4925 |
punct |
/,Mcm4 |
R3325 |
T4929 |
T4925 |
nummod |
7,Mcm4 |
R3326 |
T4930 |
T4924 |
aux |
can,bind |
R3327 |
T4932 |
T4924 |
prep |
to,bind |
R3328 |
T4933 |
T4934 |
compound |
Bub66,G |
R3329 |
T4934 |
T4932 |
pobj |
G,to |
R3330 |
T4935 |
T4934 |
punct |
/,G |
R3331 |
T4936 |
T4934 |
compound |
T,G |
R3332 |
T4937 |
T4934 |
punct |
–,G |
R3333 |
T4938 |
T4934 |
punct |
-,G |
R3334 |
T4939 |
T4934 |
amod |
rich,G |
R3335 |
T4940 |
T4924 |
cc |
and,bind |
R3336 |
T4941 |
T4924 |
conj |
forms,bind |
R3337 |
T4942 |
T4943 |
det |
a,complex |
R3338 |
T4943 |
T4941 |
dobj |
complex,forms |
R3339 |
T4944 |
T4945 |
amod |
double,hexameric |
R3340 |
T4945 |
T4943 |
amod |
hexameric,complex |
R3341 |
T4946 |
T4947 |
punct |
(,shown |
R3342 |
T4947 |
T4941 |
parataxis |
shown,forms |
R3343 |
T4948 |
T4947 |
nsubj |
data,shown |
R3344 |
T4949 |
T4947 |
neg |
not,shown |
R3345 |
T4950 |
T4947 |
punct |
),shown |
R3346 |
T4951 |
T4931 |
punct |
", ",is |
R3347 |
T4952 |
T4953 |
det |
the,unwinding |
R3348 |
T4953 |
T4931 |
nsubj |
unwinding,is |
R3349 |
T4954 |
T4953 |
amod |
defective,unwinding |
R3350 |
T4955 |
T4931 |
neg |
not,is |
R3351 |
T4956 |
T4931 |
prep |
due,is |
R3352 |
T4957 |
T4956 |
pcomp |
to,due |
R3353 |
T4958 |
T4959 |
amod |
inefficient,loading |
R3354 |
T4959 |
T4956 |
pobj |
loading,due |
R3355 |
T4960 |
T4959 |
prep |
of,loading |
R3356 |
T4961 |
T4962 |
det |
the,helicase |
R3357 |
T4962 |
T4960 |
pobj |
helicase,of |
R3358 |
T4963 |
T4959 |
prep |
onto,loading |
R3359 |
T4964 |
T4965 |
det |
the,substrate |
R3360 |
T4965 |
T4963 |
pobj |
substrate,onto |
R3361 |
T4966 |
T4931 |
punct |
.,is |
R3362 |
T4968 |
T4969 |
mark |
If,dissociates |
R3363 |
T4969 |
T4979 |
advcl |
dissociates,result |
R3364 |
T4970 |
T4971 |
nummod |
one,hexamer |
R3365 |
T4971 |
T4969 |
nsubj |
hexamer,dissociates |
R3366 |
T4972 |
T4971 |
acl |
interacting,hexamer |
R3367 |
T4973 |
T4972 |
prep |
with,interacting |
R3368 |
T4974 |
T4975 |
det |
the,strand |
R3369 |
T4975 |
T4973 |
pobj |
strand,with |
R3370 |
T4976 |
T4977 |
npadvmod |
thymine,rich |
R3371 |
T4977 |
T4975 |
amod |
rich,strand |
R3372 |
T4978 |
T4977 |
punct |
-,rich |
R3373 |
T4980 |
T4969 |
prep |
from,dissociates |
R3374 |
T4981 |
T4982 |
det |
the,hexamer |
R3375 |
T4982 |
T4980 |
pobj |
hexamer,from |
R3376 |
T4983 |
T4982 |
amod |
other,hexamer |
R3377 |
T4984 |
T4969 |
cc |
and,dissociates |
R3378 |
T4985 |
T4969 |
conj |
displaces,dissociates |
R3379 |
T4986 |
T4987 |
advmod |
only,one |
R3380 |
T4987 |
T4985 |
dobj |
one,displaces |
R3381 |
T4988 |
T4987 |
prep |
of,one |
R3382 |
T4989 |
T4990 |
det |
the,segments |
R3383 |
T4990 |
T4988 |
pobj |
segments,of |
R3384 |
T4991 |
T4990 |
compound |
duplex,segments |
R3385 |
T4992 |
T4979 |
punct |
", ",result |
R3386 |
T4993 |
T4979 |
advmod |
then,result |
R3387 |
T4994 |
T4979 |
nsubj |
it,result |
R3388 |
T4995 |
T4979 |
aux |
would,result |
R3389 |
T4996 |
T4979 |
prep |
in,result |
R3390 |
T4997 |
T4996 |
pobj |
generation,in |
R3391 |
T4998 |
T4997 |
prep |
of,generation |
R3392 |
T4999 |
T5000 |
compound |
Y,fork |
R3393 |
T5000 |
T5002 |
compound |
fork,structures |
R3394 |
T5001 |
T5000 |
punct |
-,fork |
R3395 |
T5002 |
T4998 |
pobj |
structures,of |
R3396 |
T5003 |
T5004 |
dep |
which,displaced |
R3397 |
T5004 |
T5002 |
relcl |
displaced,structures |
R3398 |
T5005 |
T5004 |
aux |
could,displaced |
R3399 |
T5006 |
T5004 |
neg |
not,displaced |
R3400 |
T5007 |
T5004 |
auxpass |
be,displaced |
R3401 |
T5008 |
T5004 |
advmod |
further,displaced |
R3402 |
T5009 |
T5004 |
prep |
due,displaced |
R3403 |
T5010 |
T5009 |
pcomp |
to,due |
R3404 |
T5011 |
T5012 |
det |
the,presence |
R3405 |
T5012 |
T5009 |
pobj |
presence,due |
R3406 |
T5013 |
T5012 |
prep |
of,presence |
R3407 |
T5014 |
T5015 |
npadvmod |
G,rich |
R3408 |
T5015 |
T5017 |
amod |
rich,tail |
R3409 |
T5016 |
T5015 |
punct |
-,rich |
R3410 |
T5017 |
T5013 |
pobj |
tail,of |
R3411 |
T5018 |
T5017 |
nummod |
3,tail |
R3412 |
T5019 |
T5018 |
punct |
′,3 |
R3413 |
T5020 |
T5017 |
punct |
-,tail |
R3414 |
T5021 |
T5004 |
cc |
and,displaced |
R3415 |
T5022 |
T5023 |
aux |
would,appear |
R3416 |
T5023 |
T5004 |
conj |
appear,displaced |
R3417 |
T5024 |
T5023 |
prep |
on,appear |
R3418 |
T5025 |
T5026 |
det |
the,gel |
R3419 |
T5026 |
T5024 |
pobj |
gel,on |
R3420 |
T5027 |
T4979 |
punct |
.,result |
R3421 |
T5029 |
T5030 |
advmod |
However,detect |
R3422 |
T5031 |
T5030 |
punct |
", ",detect |
R3423 |
T5032 |
T5030 |
nsubj |
we,detect |
R3424 |
T5033 |
T5030 |
aux |
did,detect |
R3425 |
T5034 |
T5030 |
neg |
not,detect |
R3426 |
T5035 |
T5036 |
amod |
such,intermediates |
R3427 |
T5036 |
T5030 |
dobj |
intermediates,detect |
R3428 |
T5037 |
T5030 |
prep |
during,detect |
R3429 |
T5038 |
T5039 |
det |
the,course |
R3430 |
T5039 |
T5037 |
pobj |
course,during |
R3431 |
T5040 |
T5039 |
prep |
of,course |
R3432 |
T5041 |
T5042 |
det |
the,experiment |
R3433 |
T5042 |
T5040 |
pobj |
experiment,of |
R3434 |
T5043 |
T5044 |
punct |
(,3B |
R3435 |
T5044 |
T5030 |
parataxis |
3B,detect |
R3436 |
T5045 |
T5044 |
compound |
Figure,3B |
R3437 |
T5046 |
T5044 |
punct |
),3B |
R3438 |
T5047 |
T5030 |
punct |
", ",detect |
R3439 |
T5048 |
T5030 |
advcl |
suggesting,detect |
R3440 |
T5049 |
T5050 |
mark |
that,displaced |
R3441 |
T5050 |
T5048 |
ccomp |
displaced,suggesting |
R3442 |
T5051 |
T5050 |
nsubjpass |
bubble,displaced |
R3443 |
T5052 |
T5050 |
aux |
can,displaced |
R3444 |
T5053 |
T5050 |
auxpass |
be,displaced |
R3445 |
T5054 |
T5050 |
advmod |
efficiently,displaced |
R3446 |
T5055 |
T5056 |
advmod |
only,activated |
R3447 |
T5056 |
T5050 |
advcl |
activated,displaced |
R3448 |
T5057 |
T5056 |
advmod |
when,activated |
R3449 |
T5058 |
T5059 |
nummod |
two,molecules |
R3450 |
T5059 |
T5056 |
nsubjpass |
molecules,activated |
R3451 |
T5060 |
T5059 |
prep |
of,molecules |
R3452 |
T5061 |
T5062 |
det |
the,hexamers |
R3453 |
T5062 |
T5060 |
pobj |
hexamers,of |
R3454 |
T5063 |
T5062 |
nmod |
Mcm4,hexamers |
R3455 |
T5064 |
T5063 |
punct |
/,Mcm4 |
R3456 |
T5065 |
T5063 |
nummod |
6,Mcm4 |
R3457 |
T5066 |
T5063 |
punct |
/,Mcm4 |
R3458 |
T5067 |
T5063 |
nummod |
7,Mcm4 |
R3459 |
T5068 |
T5056 |
auxpass |
are,activated |
R3460 |
T5069 |
T5056 |
advmod |
simultaneously,activated |
R3461 |
T5070 |
T5030 |
punct |
.,detect |
R3464 |
T5260 |
T5261 |
nmod |
Binding,actions |
R3465 |
T5262 |
T5260 |
cc |
and,Binding |
R3466 |
T5263 |
T5260 |
conj |
helicase,Binding |
R3467 |
T5264 |
T5261 |
prep |
of,actions |
R3468 |
T5265 |
T5264 |
pobj |
Mcm4,of |
R3469 |
T5266 |
T5265 |
punct |
/,Mcm4 |
R3470 |
T5267 |
T5265 |
nummod |
6,Mcm4 |
R3471 |
T5268 |
T5265 |
punct |
/,Mcm4 |
R3472 |
T5269 |
T5265 |
nummod |
7,Mcm4 |
R3473 |
T5270 |
T5261 |
prep |
on,actions |
R3474 |
T5271 |
T5272 |
amod |
forked,substrates |
R3475 |
T5272 |
T5270 |
pobj |
substrates,on |
R3476 |
T5273 |
T5271 |
cc |
and,forked |
R3477 |
T5274 |
T5275 |
nummod |
3,extension |
R3478 |
T5275 |
T5271 |
conj |
extension,forked |
R3479 |
T5276 |
T5274 |
punct |
′,3 |
R3480 |
T5277 |
T5274 |
punct |
-,3 |
R3481 |
T5278 |
T5274 |
cc |
or,3 |
R3482 |
T5279 |
T5274 |
conj |
5,3 |
R3483 |
T5280 |
T5279 |
punct |
′,5 |
R3484 |
T5281 |
T5275 |
punct |
-,extension |
R3485 |
T5283 |
T5284 |
prep |
In,constructed |
R3486 |
T5285 |
T5283 |
pobj |
order,In |
R3487 |
T5286 |
T5287 |
aux |
to,examine |
R3488 |
T5287 |
T5285 |
acl |
examine,order |
R3489 |
T5288 |
T5289 |
advmod |
more,precisely |
R3490 |
T5289 |
T5287 |
advmod |
precisely,examine |
R3491 |
T5290 |
T5291 |
det |
the,interaction |
R3492 |
T5291 |
T5287 |
dobj |
interaction,examine |
R3493 |
T5292 |
T5291 |
cc |
and,interaction |
R3494 |
T5293 |
T5294 |
compound |
helicase,actions |
R3495 |
T5294 |
T5291 |
conj |
actions,interaction |
R3496 |
T5295 |
T5291 |
prep |
with,interaction |
R3497 |
T5296 |
T5297 |
amod |
forked,substrates |
R3498 |
T5297 |
T5295 |
pobj |
substrates,with |
R3499 |
T5298 |
T5284 |
punct |
", ",constructed |
R3500 |
T5299 |
T5300 |
compound |
Y,fork |
R3501 |
T5300 |
T5302 |
compound |
fork,substrates |
R3502 |
T5301 |
T5300 |
punct |
-,fork |
R3503 |
T5302 |
T5284 |
nsubjpass |
substrates,constructed |
R3504 |
T5303 |
T5302 |
acl |
containing,substrates |
R3505 |
T5304 |
T5305 |
det |
a,strand |
R3506 |
T5305 |
T5303 |
dobj |
strand,containing |
R3507 |
T5306 |
T5305 |
amod |
nascent,strand |
R3508 |
T5307 |
T5305 |
amod |
leading,strand |
R3509 |
T5308 |
T5305 |
punct |
(,strand |
R3510 |
T5309 |
T5310 |
compound |
A,fork |
R3511 |
T5310 |
T5305 |
appos |
fork,strand |
R3512 |
T5311 |
T5310 |
punct |
-,fork |
R3513 |
T5312 |
T5310 |
punct |
[,fork |
R3514 |
T5313 |
T5310 |
nummod |
3,fork |
R3515 |
T5314 |
T5310 |
punct |
′,fork |
R3516 |
T5315 |
T5305 |
punct |
],strand |
R3517 |
T5316 |
T5305 |
punct |
),strand |
R3518 |
T5317 |
T5305 |
punct |
", ",strand |
R3519 |
T5318 |
T5319 |
amod |
nascent,strand |
R3520 |
T5319 |
T5305 |
appos |
strand,strand |
R3521 |
T5320 |
T5319 |
amod |
lagging,strand |
R3522 |
T5321 |
T5319 |
punct |
(,strand |
R3523 |
T5322 |
T5323 |
compound |
A,fork |
R3524 |
T5323 |
T5319 |
appos |
fork,strand |
R3525 |
T5324 |
T5323 |
punct |
-,fork |
R3526 |
T5325 |
T5323 |
punct |
[,fork |
R3527 |
T5326 |
T5323 |
nummod |
5,fork |
R3528 |
T5327 |
T5323 |
punct |
′,fork |
R3529 |
T5328 |
T5305 |
punct |
],strand |
R3530 |
T5329 |
T5305 |
punct |
),strand |
R3531 |
T5330 |
T5305 |
punct |
", ",strand |
R3532 |
T5331 |
T5305 |
cc |
or,strand |
R3533 |
T5332 |
T5305 |
conj |
both,strand |
R3534 |
T5333 |
T5332 |
prep |
of,both |
R3535 |
T5334 |
T5333 |
pobj |
them,of |
R3536 |
T5335 |
T5332 |
punct |
(,both |
R3537 |
T5336 |
T5337 |
nmod |
A,fork |
R3538 |
T5337 |
T5339 |
nmod |
fork,structures |
R3539 |
T5338 |
T5337 |
punct |
-,fork |
R3540 |
T5339 |
T5332 |
appos |
structures,both |
R3541 |
T5340 |
T5337 |
punct |
[,fork |
R3542 |
T5341 |
T5337 |
appos |
3,fork |
R3543 |
T5342 |
T5341 |
punct |
′,3 |
R3544 |
T5343 |
T5341 |
punct |
",",3 |
R3545 |
T5344 |
T5341 |
appos |
5,3 |
R3546 |
T5345 |
T5344 |
punct |
′,5 |
R3547 |
T5346 |
T5337 |
punct |
],fork |
R3548 |
T5347 |
T5337 |
punct |
),fork |
R3549 |
T5348 |
T5337 |
punct |
", ",fork |
R3550 |
T5349 |
T5350 |
advmod |
as,as |
R3551 |
T5350 |
T5337 |
cc |
as,fork |
R3552 |
T5351 |
T5350 |
advmod |
well,as |
R3553 |
T5352 |
T5353 |
nummod |
5,extension |
R3554 |
T5353 |
T5337 |
conj |
extension,fork |
R3555 |
T5354 |
T5352 |
punct |
′,5 |
R3556 |
T5355 |
T5353 |
punct |
-,extension |
R3557 |
T5356 |
T5353 |
cc |
or,extension |
R3558 |
T5357 |
T5358 |
nummod |
3,extension |
R3559 |
T5358 |
T5353 |
conj |
extension,extension |
R3560 |
T5359 |
T5357 |
punct |
′,3 |
R3561 |
T5360 |
T5358 |
punct |
-,extension |
R3562 |
T5361 |
T5284 |
auxpass |
were,constructed |
R3563 |
T5362 |
T5284 |
punct |
.,constructed |
R3564 |
T5364 |
T5365 |
nsubj |
Mcm4,bound |
R3565 |
T5366 |
T5364 |
punct |
/,Mcm4 |
R3566 |
T5367 |
T5364 |
nummod |
6,Mcm4 |
R3567 |
T5368 |
T5364 |
punct |
/,Mcm4 |
R3568 |
T5369 |
T5364 |
nummod |
7,Mcm4 |
R3569 |
T5370 |
T5365 |
prep |
to,bound |
R3570 |
T5371 |
T5372 |
compound |
A,fork |
R3571 |
T5372 |
T5370 |
pobj |
fork,to |
R3572 |
T5373 |
T5372 |
punct |
-,fork |
R3573 |
T5374 |
T5372 |
punct |
[,fork |
R3574 |
T5375 |
T5372 |
nummod |
3,fork |
R3575 |
T5376 |
T5372 |
punct |
′,fork |
R3576 |
T5377 |
T5372 |
punct |
],fork |
R3577 |
T5378 |
T5372 |
cc |
or,fork |
R3578 |
T5379 |
T5380 |
compound |
A,fork |
R3579 |
T5380 |
T5372 |
conj |
fork,fork |
R3580 |
T5381 |
T5380 |
punct |
-,fork |
R3581 |
T5382 |
T5380 |
punct |
[,fork |
R3582 |
T5383 |
T5380 |
nummod |
5,fork |
R3583 |
T5384 |
T5380 |
punct |
′,fork |
R3584 |
T5385 |
T5365 |
punct |
],bound |
R3585 |
T5386 |
T5365 |
prep |
with,bound |
R3586 |
T5387 |
T5386 |
pobj |
affinity,with |
R3587 |
T5388 |
T5387 |
amod |
similar,affinity |
R3588 |
T5389 |
T5388 |
prep |
to,similar |
R3589 |
T5390 |
T5389 |
pobj |
that,to |
R3590 |
T5391 |
T5390 |
prep |
of,that |
R3591 |
T5392 |
T5393 |
det |
a,fork |
R3592 |
T5393 |
T5391 |
pobj |
fork,of |
R3593 |
T5394 |
T5393 |
amod |
simple,fork |
R3594 |
T5395 |
T5393 |
compound |
Y,fork |
R3595 |
T5396 |
T5393 |
punct |
-,fork |
R3596 |
T5397 |
T5398 |
punct |
(,4A |
R3597 |
T5398 |
T5365 |
parataxis |
4A,bound |
R3598 |
T5399 |
T5398 |
compound |
Figure,4A |
R3599 |
T5400 |
T5398 |
cc |
and,4A |
R3600 |
T5401 |
T5402 |
nsubj |
data,shown |
R3601 |
T5402 |
T5398 |
conj |
shown,4A |
R3602 |
T5403 |
T5402 |
neg |
not,shown |
R3603 |
T5404 |
T5398 |
punct |
),4A |
R3604 |
T5405 |
T5365 |
punct |
.,bound |
R3605 |
T5407 |
T5408 |
prep |
In,bound |
R3606 |
T5409 |
T5407 |
pobj |
contrast,In |
R3607 |
T5410 |
T5408 |
punct |
", ",bound |
R3608 |
T5411 |
T5412 |
compound |
PriA,helicase |
R3609 |
T5412 |
T5408 |
nsubj |
helicase,bound |
R3610 |
T5413 |
T5412 |
punct |
", ",helicase |
R3611 |
T5414 |
T5412 |
acl |
used,helicase |
R3612 |
T5415 |
T5414 |
prep |
as,used |
R3613 |
T5416 |
T5417 |
det |
a,control |
R3614 |
T5417 |
T5415 |
pobj |
control,as |
R3615 |
T5418 |
T5408 |
punct |
", ",bound |
R3616 |
T5419 |
T5408 |
prep |
to,bound |
R3617 |
T5420 |
T5421 |
compound |
A,fork |
R3618 |
T5421 |
T5419 |
pobj |
fork,to |
R3619 |
T5422 |
T5421 |
punct |
-,fork |
R3620 |
T5423 |
T5421 |
punct |
[,fork |
R3621 |
T5424 |
T5421 |
nummod |
3,fork |
R3622 |
T5425 |
T5421 |
punct |
′,fork |
R3623 |
T5426 |
T5408 |
punct |
],bound |
R3624 |
T5427 |
T5428 |
advmod |
more,efficiently |
R3625 |
T5428 |
T5408 |
advmod |
efficiently,bound |
R3626 |
T5429 |
T5428 |
prep |
than,efficiently |
R3627 |
T5430 |
T5429 |
prep |
to,than |
R3628 |
T5431 |
T5432 |
compound |
A,fork |
R3629 |
T5432 |
T5430 |
pobj |
fork,to |
R3630 |
T5433 |
T5432 |
punct |
-,fork |
R3631 |
T5434 |
T5432 |
punct |
[,fork |
R3632 |
T5435 |
T5432 |
nummod |
5,fork |
R3633 |
T5436 |
T5432 |
punct |
′,fork |
R3634 |
T5437 |
T5408 |
punct |
],bound |
R3635 |
T5438 |
T5408 |
punct |
", ",bound |
R3636 |
T5439 |
T5440 |
mark |
as,reported |
R3637 |
T5440 |
T5408 |
advcl |
reported,bound |
R3638 |
T5441 |
T5440 |
advmod |
previously,reported |
R3639 |
T5442 |
T5443 |
punct |
(,25 |
R3640 |
T5443 |
T5440 |
parataxis |
25,reported |
R3641 |
T5444 |
T5443 |
nummod |
23,25 |
R3642 |
T5445 |
T5443 |
punct |
",",25 |
R3643 |
T5446 |
T5443 |
punct |
),25 |
R3644 |
T5447 |
T5408 |
punct |
.,bound |
R3645 |
T5449 |
T5450 |
nsubj |
Mcm4,bound |
R3646 |
T5451 |
T5449 |
punct |
/,Mcm4 |
R3647 |
T5452 |
T5449 |
nummod |
6,Mcm4 |
R3648 |
T5453 |
T5449 |
punct |
/,Mcm4 |
R3649 |
T5454 |
T5449 |
nummod |
7,Mcm4 |
R3650 |
T5455 |
T5450 |
advmod |
also,bound |
R3651 |
T5456 |
T5450 |
prep |
to,bound |
R3652 |
T5457 |
T5458 |
nummod |
5,extension |
R3653 |
T5458 |
T5456 |
pobj |
extension,to |
R3654 |
T5459 |
T5457 |
punct |
′,5 |
R3655 |
T5460 |
T5458 |
punct |
-,extension |
R3656 |
T5461 |
T5458 |
cc |
and,extension |
R3657 |
T5462 |
T5463 |
nummod |
3,extension |
R3658 |
T5463 |
T5458 |
conj |
extension,extension |
R3659 |
T5464 |
T5462 |
punct |
′,3 |
R3660 |
T5465 |
T5463 |
punct |
-,extension |
R3661 |
T5466 |
T5450 |
punct |
", ",bound |
R3662 |
T5467 |
T5468 |
dep |
albeit,with |
R3663 |
T5468 |
T5450 |
prep |
with,bound |
R3664 |
T5469 |
T5470 |
advmod |
slightly,reduced |
R3665 |
T5470 |
T5471 |
amod |
reduced,affinity |
R3666 |
T5471 |
T5468 |
pobj |
affinity,with |
R3667 |
T5472 |
T5471 |
prep |
compared,affinity |
R3668 |
T5473 |
T5472 |
prep |
to,compared |
R3669 |
T5474 |
T5475 |
compound |
A,fork |
R3670 |
T5475 |
T5473 |
pobj |
fork,to |
R3671 |
T5476 |
T5475 |
punct |
-,fork |
R3672 |
T5477 |
T5475 |
punct |
[,fork |
R3673 |
T5478 |
T5475 |
nummod |
3,fork |
R3674 |
T5479 |
T5475 |
punct |
′,fork |
R3675 |
T5480 |
T5475 |
punct |
],fork |
R3676 |
T5481 |
T5475 |
cc |
and,fork |
R3677 |
T5482 |
T5483 |
compound |
A,fork |
R3678 |
T5483 |
T5475 |
conj |
fork,fork |
R3679 |
T5484 |
T5483 |
punct |
-,fork |
R3680 |
T5485 |
T5483 |
punct |
[,fork |
R3681 |
T5486 |
T5483 |
nummod |
5,fork |
R3682 |
T5487 |
T5483 |
punct |
′,fork |
R3683 |
T5488 |
T5450 |
punct |
],bound |
R3684 |
T5489 |
T5490 |
punct |
(,4A |
R3685 |
T5490 |
T5450 |
parataxis |
4A,bound |
R3686 |
T5491 |
T5490 |
compound |
Figure,4A |
R3687 |
T5492 |
T5490 |
punct |
),4A |
R3688 |
T5493 |
T5450 |
punct |
.,bound |
R3689 |
T5495 |
T5496 |
nsubj |
Mcm4,bound |
R3690 |
T5497 |
T5495 |
punct |
/,Mcm4 |
R3691 |
T5498 |
T5495 |
nummod |
6,Mcm4 |
R3692 |
T5499 |
T5495 |
punct |
/,Mcm4 |
R3693 |
T5500 |
T5495 |
nummod |
7,Mcm4 |
R3694 |
T5501 |
T5496 |
prep |
to,bound |
R3695 |
T5502 |
T5503 |
compound |
A,fork |
R3696 |
T5503 |
T5501 |
pobj |
fork,to |
R3697 |
T5504 |
T5503 |
punct |
-,fork |
R3698 |
T5505 |
T5503 |
punct |
[,fork |
R3699 |
T5506 |
T5503 |
appos |
3,fork |
R3700 |
T5507 |
T5506 |
punct |
′,3 |
R3701 |
T5508 |
T5506 |
punct |
",",3 |
R3702 |
T5509 |
T5506 |
appos |
5,3 |
R3703 |
T5510 |
T5509 |
punct |
′,5 |
R3704 |
T5511 |
T5496 |
punct |
],bound |
R3705 |
T5512 |
T5496 |
prep |
with,bound |
R3706 |
T5513 |
T5514 |
advmod |
much,lower |
R3707 |
T5514 |
T5515 |
amod |
lower,affinity |
R3708 |
T5515 |
T5512 |
pobj |
affinity,with |
R3709 |
T5516 |
T5496 |
punct |
", ",bound |
R3710 |
T5517 |
T5496 |
cc |
and,bound |
R3711 |
T5518 |
T5519 |
det |
the,complex |
R3712 |
T5519 |
T5520 |
nsubj |
complex,gave |
R3713 |
T5520 |
T5496 |
conj |
gave,bound |
R3714 |
T5521 |
T5520 |
dobj |
rise,gave |
R3715 |
T5522 |
T5520 |
prep |
to,gave |
R3716 |
T5523 |
T5524 |
det |
a,band |
R3717 |
T5524 |
T5522 |
pobj |
band,to |
R3718 |
T5525 |
T5524 |
amod |
single,band |
R3719 |
T5526 |
T5520 |
punct |
.,gave |
R3720 |
T5528 |
T5529 |
det |
These,findings |
R3721 |
T5529 |
T5530 |
nsubj |
findings,indicate |
R3722 |
T5531 |
T5532 |
mark |
that,loaded |
R3723 |
T5532 |
T5530 |
ccomp |
loaded,indicate |
R3724 |
T5533 |
T5534 |
det |
the,complex |
R3725 |
T5534 |
T5532 |
nsubjpass |
complex,loaded |
R3726 |
T5535 |
T5534 |
nmod |
Mcm4,complex |
R3727 |
T5536 |
T5535 |
punct |
/,Mcm4 |
R3728 |
T5537 |
T5535 |
nummod |
6,Mcm4 |
R3729 |
T5538 |
T5535 |
punct |
/,Mcm4 |
R3730 |
T5539 |
T5535 |
nummod |
7,Mcm4 |
R3731 |
T5540 |
T5532 |
auxpass |
is,loaded |
R3732 |
T5541 |
T5532 |
prep |
onto,loaded |
R3733 |
T5542 |
T5541 |
pobj |
DNA,onto |
R3734 |
T5543 |
T5532 |
advmod |
preferentially,loaded |
R3735 |
T5544 |
T5543 |
cc |
and,preferentially |
R3736 |
T5545 |
T5543 |
conj |
efficiently,preferentially |
R3737 |
T5546 |
T5532 |
prep |
through,loaded |
R3738 |
T5547 |
T5548 |
amod |
single,stranded |
R3739 |
T5548 |
T5550 |
amod |
stranded,region |
R3740 |
T5549 |
T5548 |
punct |
-,stranded |
R3741 |
T5550 |
T5546 |
pobj |
region,through |
R3742 |
T5551 |
T5532 |
punct |
", ",loaded |
R3743 |
T5552 |
T5532 |
advmod |
regardless,loaded |
R3744 |
T5553 |
T5552 |
prep |
of,regardless |
R3745 |
T5554 |
T5555 |
det |
the,presence |
R3746 |
T5555 |
T5553 |
pobj |
presence,of |
R3747 |
T5556 |
T5555 |
prep |
of,presence |
R3748 |
T5557 |
T5558 |
nummod |
3,terminus |
R3749 |
T5558 |
T5556 |
pobj |
terminus,of |
R3750 |
T5559 |
T5557 |
punct |
′,3 |
R3751 |
T5560 |
T5557 |
punct |
-,3 |
R3752 |
T5561 |
T5557 |
cc |
or,3 |
R3753 |
T5562 |
T5557 |
conj |
5,3 |
R3754 |
T5563 |
T5562 |
punct |
′,5 |
R3755 |
T5564 |
T5558 |
punct |
-,terminus |
R3756 |
T5565 |
T5530 |
punct |
.,indicate |
R3757 |
T5567 |
T5568 |
prep |
In,unwound |
R3758 |
T5569 |
T5567 |
pobj |
contrast,In |
R3759 |
T5570 |
T5568 |
punct |
", ",unwound |
R3760 |
T5571 |
T5572 |
advmod |
only,substrate |
R3761 |
T5572 |
T5568 |
nsubjpass |
substrate,unwound |
R3762 |
T5573 |
T5572 |
det |
the,substrate |
R3763 |
T5574 |
T5572 |
acl |
containing,substrate |
R3764 |
T5575 |
T5576 |
det |
a,tail |
R3765 |
T5576 |
T5574 |
dobj |
tail,containing |
R3766 |
T5577 |
T5576 |
nummod |
3,tail |
R3767 |
T5578 |
T5577 |
punct |
′,3 |
R3768 |
T5579 |
T5580 |
amod |
single,stranded |
R3769 |
T5580 |
T5576 |
amod |
stranded,tail |
R3770 |
T5581 |
T5580 |
punct |
-,stranded |
R3771 |
T5582 |
T5576 |
compound |
DNA,tail |
R3772 |
T5583 |
T5584 |
punct |
(,fork |
R3773 |
T5584 |
T5572 |
appos |
fork,substrate |
R3774 |
T5585 |
T5584 |
compound |
A,fork |
R3775 |
T5586 |
T5584 |
punct |
-,fork |
R3776 |
T5587 |
T5584 |
punct |
[,fork |
R3777 |
T5588 |
T5584 |
nummod |
5,fork |
R3778 |
T5589 |
T5584 |
punct |
′,fork |
R3779 |
T5590 |
T5568 |
punct |
],unwound |
R3780 |
T5591 |
T5568 |
punct |
),unwound |
R3781 |
T5592 |
T5568 |
auxpass |
was,unwound |
R3782 |
T5593 |
T5568 |
advmod |
efficiently,unwound |
R3783 |
T5594 |
T5568 |
cc |
and,unwound |
R3784 |
T5595 |
T5596 |
compound |
A,fork |
R3785 |
T5596 |
T5598 |
nsubjpass |
fork,unwound |
R3786 |
T5597 |
T5596 |
punct |
-,fork |
R3788 |
T5599 |
T5596 |
punct |
[,fork |
R3789 |
T5600 |
T5596 |
nummod |
3,fork |
R3790 |
T5601 |
T5596 |
punct |
′,fork |
R3791 |
T5602 |
T5596 |
punct |
],fork |
R3792 |
T5603 |
T5596 |
cc |
or,fork |
R3793 |
T5604 |
T5605 |
compound |
A,fork |
R3794 |
T5605 |
T5596 |
conj |
fork,fork |
R3795 |
T5606 |
T5605 |
punct |
-,fork |
R3796 |
T5607 |
T5605 |
punct |
[,fork |
R3797 |
T5608 |
T5605 |
appos |
3,fork |
R3798 |
T5609 |
T5608 |
punct |
′,3 |
R3799 |
T5610 |
T5608 |
punct |
",",3 |
R3800 |
T5611 |
T5608 |
appos |
5,3 |
R3801 |
T5612 |
T5611 |
punct |
′,5 |
R3802 |
T5613 |
T5598 |
punct |
],unwound |
R3803 |
T5614 |
T5598 |
punct |
", ",unwound |
R3804 |
T5615 |
T5598 |
auxpass |
was,unwound |
R3805 |
T5616 |
T5598 |
neg |
not,unwound |
R3806 |
T5617 |
T5598 |
agent |
by,unwound |
R3807 |
T5618 |
T5617 |
pobj |
Mcm4,by |
R3808 |
T5619 |
T5618 |
punct |
/,Mcm4 |
R3809 |
T5620 |
T5618 |
nummod |
6,Mcm4 |
R3810 |
T5621 |
T5618 |
punct |
/,Mcm4 |
R3811 |
T5622 |
T5618 |
nummod |
7,Mcm4 |
R3812 |
T5623 |
T5624 |
punct |
(,4B |
R3813 |
T5624 |
T5598 |
parataxis |
4B,unwound |
R3814 |
T5625 |
T5624 |
compound |
Figure,4B |
R3815 |
T5626 |
T5624 |
punct |
),4B |
R3816 |
T5627 |
T5568 |
punct |
.,unwound |
R3817 |
T5629 |
T5630 |
nsubjpass |
Absence,expected |
R3818 |
T5631 |
T5629 |
prep |
of,Absence |
R3819 |
T5632 |
T5633 |
compound |
helicase,actions |
R3820 |
T5633 |
T5631 |
pobj |
actions,of |
R3821 |
T5634 |
T5629 |
prep |
on,Absence |
R3822 |
T5635 |
T5636 |
compound |
A,fork |
R3823 |
T5636 |
T5634 |
pobj |
fork,on |
R3824 |
T5637 |
T5636 |
punct |
-,fork |
R3825 |
T5638 |
T5636 |
punct |
[,fork |
R3826 |
T5639 |
T5636 |
appos |
3,fork |
R3827 |
T5640 |
T5639 |
punct |
′,3 |
R3828 |
T5641 |
T5639 |
punct |
",",3 |
R3829 |
T5642 |
T5639 |
appos |
5,3 |
R3830 |
T5643 |
T5642 |
punct |
′,5 |
R3831 |
T5644 |
T5636 |
punct |
],fork |
R3832 |
T5645 |
T5636 |
acl |
composed,fork |
R3833 |
T5646 |
T5647 |
advmod |
only,of |
R3834 |
T5647 |
T5645 |
prep |
of,composed |
R3835 |
T5648 |
T5649 |
compound |
duplex,regions |
R3836 |
T5649 |
T5647 |
pobj |
regions,of |
R3837 |
T5650 |
T5630 |
auxpass |
is,expected |
R3838 |
T5651 |
T5652 |
mark |
since,is |
R3839 |
T5652 |
T5630 |
advcl |
is,expected |
R3840 |
T5653 |
T5654 |
amod |
double,stranded |
R3841 |
T5654 |
T5656 |
amod |
stranded,DNA |
R3842 |
T5655 |
T5654 |
punct |
-,stranded |
R3843 |
T5656 |
T5652 |
nsubj |
DNA,is |
R3844 |
T5657 |
T5652 |
neg |
not,is |
R3845 |
T5658 |
T5652 |
acomp |
able,is |
R3846 |
T5659 |
T5660 |
aux |
to,activate |
R3847 |
T5660 |
T5658 |
xcomp |
activate,able |
R3848 |
T5661 |
T5662 |
det |
the,activity |
R3849 |
T5662 |
T5660 |
dobj |
activity,activate |
R3850 |
T5663 |
T5662 |
compound |
ATPase,activity |
R3851 |
T5664 |
T5662 |
prep |
of,activity |
R3852 |
T5665 |
T5664 |
pobj |
Mcm4,of |
R3853 |
T5666 |
T5665 |
punct |
/,Mcm4 |
R3854 |
T5667 |
T5665 |
nummod |
6,Mcm4 |
R3855 |
T5668 |
T5665 |
punct |
/,Mcm4 |
R3856 |
T5669 |
T5665 |
nummod |
7,Mcm4 |
R3857 |
T5670 |
T5671 |
punct |
(,10 |
R3858 |
T5671 |
T5652 |
parataxis |
10,is |
R3859 |
T5672 |
T5671 |
punct |
),10 |
R3860 |
T5673 |
T5630 |
punct |
.,expected |
R3861 |
T5675 |
T5676 |
prep |
In,binds |
R3862 |
T5677 |
T5675 |
pobj |
contrast,In |
R3863 |
T5678 |
T5676 |
punct |
", ",binds |
R3864 |
T5679 |
T5680 |
det |
the,PriA |
R3865 |
T5680 |
T5676 |
nsubj |
PriA,binds |
R3866 |
T5681 |
T5680 |
punct |
", ",PriA |
R3867 |
T5682 |
T5683 |
det |
a,helicase |
R3868 |
T5683 |
T5680 |
appos |
helicase,PriA |
R3869 |
T5684 |
T5685 |
npadvmod |
structure,specific |
R3870 |
T5685 |
T5683 |
amod |
specific,helicase |
R3871 |
T5686 |
T5685 |
punct |
-,specific |
R3872 |
T5687 |
T5683 |
acl |
used,helicase |
R3873 |
T5688 |
T5687 |
prep |
as,used |
R3874 |
T5689 |
T5690 |
det |
a,control |
R3875 |
T5690 |
T5688 |
pobj |
control,as |
R3876 |
T5691 |
T5676 |
punct |
", ",binds |
R3877 |
T5692 |
T5676 |
prep |
at,binds |
R3878 |
T5693 |
T5694 |
det |
the,junction |
R3879 |
T5694 |
T5692 |
pobj |
junction,at |
R3880 |
T5695 |
T5694 |
compound |
fork,junction |
R3881 |
T5696 |
T5676 |
cc |
and,binds |
R3882 |
T5697 |
T5676 |
conj |
unwinds,binds |
R3883 |
T5698 |
T5699 |
det |
the,fork |
R3884 |
T5699 |
T5697 |
dobj |
fork,unwinds |
R3885 |
T5700 |
T5699 |
cc |
and,fork |
R3886 |
T5701 |
T5702 |
det |
the,DNA |
R3887 |
T5702 |
T5699 |
conj |
DNA,fork |
R3888 |
T5703 |
T5702 |
amod |
nascent,DNA |
R3889 |
T5704 |
T5702 |
amod |
lagging,DNA |
R3890 |
T5705 |
T5702 |
compound |
strand,DNA |
R3891 |
T5706 |
T5702 |
prep |
on,DNA |
R3892 |
T5707 |
T5708 |
compound |
A,fork |
R3893 |
T5708 |
T5706 |
pobj |
fork,on |
R3894 |
T5709 |
T5708 |
punct |
-,fork |
R3895 |
T5710 |
T5708 |
punct |
[,fork |
R3896 |
T5711 |
T5708 |
nummod |
5,fork |
R3897 |
T5712 |
T5708 |
punct |
′,fork |
R3898 |
T5713 |
T5676 |
punct |
],binds |
R3899 |
T5714 |
T5676 |
punct |
", ",binds |
R3900 |
T5715 |
T5676 |
cc |
or,binds |
R3901 |
T5716 |
T5676 |
conj |
unwinds,binds |
R3902 |
T5717 |
T5718 |
det |
the,strand |
R3903 |
T5718 |
T5716 |
dobj |
strand,unwinds |
R3904 |
T5719 |
T5718 |
amod |
nascent,strand |
R3905 |
T5720 |
T5718 |
amod |
lagging,strand |
R3906 |
T5721 |
T5716 |
prep |
on,unwinds |
R3907 |
T5722 |
T5723 |
compound |
A,fork |
R3908 |
T5723 |
T5721 |
pobj |
fork,on |
R3909 |
T5724 |
T5723 |
punct |
-,fork |
R3910 |
T5725 |
T5723 |
punct |
[,fork |
R3911 |
T5726 |
T5723 |
appos |
3,fork |
R3912 |
T5727 |
T5726 |
punct |
′,3 |
R3913 |
T5728 |
T5726 |
punct |
",",3 |
R3914 |
T5729 |
T5726 |
appos |
5,3 |
R3915 |
T5730 |
T5729 |
punct |
′,5 |
R3916 |
T5731 |
T5676 |
punct |
],binds |
R3917 |
T5732 |
T5676 |
punct |
", ",binds |
R3918 |
T5733 |
T5734 |
mark |
as,reported |
R3919 |
T5734 |
T5676 |
advcl |
reported,binds |
R3920 |
T5735 |
T5734 |
advmod |
before,reported |
R3921 |
T5736 |
T5737 |
punct |
(,25 |
R3922 |
T5737 |
T5734 |
parataxis |
25,reported |
R3923 |
T5738 |
T5737 |
punct |
),25 |
R3924 |
T5739 |
T5676 |
punct |
.,binds |
R3925 |
T5741 |
T5742 |
det |
These,results |
R3926 |
T5742 |
T5743 |
nsubj |
results,indicate |
R3927 |
T5744 |
T5745 |
mark |
that,binds |
R3928 |
T5745 |
T5743 |
advcl |
binds,indicate |
R3929 |
T5746 |
T5747 |
det |
the,complex |
R3930 |
T5747 |
T5745 |
nsubj |
complex,binds |
R3931 |
T5748 |
T5747 |
nmod |
Mcm4,complex |
R3932 |
T5749 |
T5748 |
punct |
/,Mcm4 |
R3933 |
T5750 |
T5748 |
nummod |
6,Mcm4 |
R3934 |
T5751 |
T5748 |
punct |
/,Mcm4 |
R3935 |
T5752 |
T5748 |
nummod |
7,Mcm4 |
R3936 |
T5753 |
T5745 |
prep |
to,binds |
R3937 |
T5754 |
T5755 |
amod |
single,stranded |
R3938 |
T5755 |
T5757 |
amod |
stranded,DNA |
R3939 |
T5756 |
T5755 |
punct |
-,stranded |
R3940 |
T5757 |
T5753 |
pobj |
DNA,to |
R3941 |
T5758 |
T5745 |
cc |
and,binds |
R3942 |
T5759 |
T5760 |
mark |
that,activated |
R3943 |
T5760 |
T5745 |
conj |
activated,binds |
R3944 |
T5761 |
T5762 |
poss |
its,helicase |
R3945 |
T5762 |
T5760 |
nsubjpass |
helicase,activated |
R3946 |
T5763 |
T5760 |
auxpass |
is,activated |
R3947 |
T5764 |
T5765 |
advmod |
only,in |
R3948 |
T5765 |
T5760 |
prep |
in,activated |
R3949 |
T5766 |
T5767 |
det |
the,presence |
R3950 |
T5767 |
T5765 |
pobj |
presence,in |
R3951 |
T5768 |
T5767 |
prep |
of,presence |
R3952 |
T5769 |
T5770 |
det |
a,tail |
R3953 |
T5770 |
T5768 |
pobj |
tail,of |
R3954 |
T5771 |
T5772 |
amod |
single,stranded |
R3955 |
T5772 |
T5770 |
amod |
stranded,tail |
R3956 |
T5773 |
T5772 |
punct |
-,stranded |
R3957 |
T5774 |
T5770 |
nummod |
3,tail |
R3958 |
T5775 |
T5774 |
punct |
′,3 |
R3959 |
T5776 |
T5770 |
punct |
-,tail |
R3960 |
T5777 |
T5743 |
punct |
.,indicate |
R3967 |
T5933 |
T5934 |
nummod |
3,extension |
R3968 |
T5934 |
T5937 |
nsubjpass |
extension,displaced |
R3969 |
T5935 |
T5933 |
punct |
′,3 |
R3970 |
T5936 |
T5934 |
punct |
-,extension |
R3971 |
T5938 |
T5934 |
prep |
with,extension |
R3972 |
T5939 |
T5940 |
nmod |
poly,dT |
R3973 |
T5940 |
T5942 |
nmod |
dT,tail |
R3974 |
T5941 |
T5940 |
punct |
(,dT |
R3975 |
T5942 |
T5938 |
pobj |
tail,with |
R3976 |
T5943 |
T5942 |
punct |
),tail |
R3977 |
T5944 |
T5937 |
auxpass |
is,displaced |
R3978 |
T5945 |
T5937 |
agent |
by,displaced |
R3979 |
T5946 |
T5945 |
pobj |
Mcm4,by |
R3980 |
T5947 |
T5946 |
punct |
/,Mcm4 |
R3981 |
T5948 |
T5946 |
nummod |
6,Mcm4 |
R3982 |
T5949 |
T5946 |
punct |
/,Mcm4 |
R3983 |
T5950 |
T5946 |
nummod |
7,Mcm4 |
R3984 |
T5952 |
T5953 |
nsubjpass |
It,reported |
R3985 |
T5954 |
T5953 |
aux |
has,reported |
R3986 |
T5955 |
T5953 |
auxpass |
been,reported |
R3987 |
T5956 |
T5957 |
mark |
that,unwound |
R3988 |
T5957 |
T5953 |
ccomp |
unwound,reported |
R3989 |
T5958 |
T5959 |
det |
the,extension |
R3990 |
T5959 |
T5957 |
nsubj |
extension,unwound |
R3991 |
T5960 |
T5959 |
nummod |
3,extension |
R3992 |
T5961 |
T5960 |
punct |
′,3 |
R3993 |
T5962 |
T5959 |
punct |
-,extension |
R3994 |
T5963 |
T5957 |
aux |
can,unwound |
R3995 |
T5964 |
T5957 |
aux |
be,unwound |
R3996 |
T5965 |
T5957 |
agent |
by,unwound |
R3997 |
T5966 |
T5967 |
det |
the,homohexamer |
R3998 |
T5967 |
T5965 |
pobj |
homohexamer,by |
R3999 |
T5968 |
T5967 |
amod |
archaeal,homohexamer |
R4000 |
T5969 |
T5967 |
compound |
Mcm,homohexamer |
R4001 |
T5970 |
T5957 |
cc |
but,unwound |
R4002 |
T5971 |
T5957 |
conj |
not,unwound |
R4003 |
T5972 |
T5971 |
agent |
by,not |
R4004 |
T5973 |
T5974 |
nmod |
fission,complexes |
R4005 |
T5974 |
T5972 |
pobj |
complexes,by |
R4006 |
T5975 |
T5973 |
cc |
and,fission |
R4007 |
T5976 |
T5973 |
conj |
budding,fission |
R4008 |
T5977 |
T5974 |
compound |
yeast,complexes |
R4009 |
T5978 |
T5974 |
compound |
Mcm,complexes |
R4010 |
T5979 |
T5980 |
punct |
(,27 |
R4011 |
T5980 |
T5953 |
parataxis |
27,reported |
R4012 |
T5981 |
T5980 |
nummod |
14,27 |
R4013 |
T5982 |
T5980 |
punct |
",",27 |
R4014 |
T5983 |
T5980 |
nummod |
26,27 |
R4015 |
T5984 |
T5980 |
punct |
",",27 |
R4016 |
T5985 |
T5980 |
punct |
),27 |
R4017 |
T5986 |
T5953 |
punct |
.,reported |
R4018 |
T5988 |
T5989 |
nsubj |
We,constructed |
R4019 |
T5990 |
T5989 |
aux |
have,constructed |
R4020 |
T5991 |
T5992 |
nummod |
3,extension |
R4021 |
T5992 |
T5995 |
compound |
extension,substrates |
R4022 |
T5993 |
T5991 |
punct |
′,3 |
R4023 |
T5994 |
T5992 |
punct |
-,extension |
R4024 |
T5995 |
T5989 |
dobj |
substrates,constructed |
R4025 |
T5996 |
T5995 |
acl |
containing,substrates |
R4026 |
T5997 |
T5998 |
nmod |
poly,dT |
R4027 |
T5998 |
T6000 |
nmod |
dT,tails |
R4028 |
T5999 |
T5998 |
punct |
(,dT |
R4029 |
T6000 |
T5996 |
dobj |
tails,containing |
R4030 |
T6001 |
T5998 |
punct |
),dT |
R4031 |
T6002 |
T5998 |
punct |
", ",dT |
R4032 |
T6003 |
T6004 |
nmod |
poly,dA |
R4033 |
T6004 |
T5998 |
conj |
dA,dT |
R4034 |
T6005 |
T6004 |
punct |
(,dA |
R4035 |
T6006 |
T6004 |
punct |
),dA |
R4036 |
T6007 |
T6004 |
punct |
", ",dA |
R4037 |
T6008 |
T6009 |
nmod |
poly,dC |
R4038 |
T6009 |
T6004 |
conj |
dC,dA |
R4039 |
T6010 |
T6009 |
punct |
(,dC |
R4040 |
T6011 |
T6009 |
punct |
),dC |
R4041 |
T6012 |
T6009 |
cc |
and,dC |
R4042 |
T6013 |
T6014 |
nmod |
poly,dG |
R4043 |
T6014 |
T6009 |
conj |
dG,dC |
R4044 |
T6015 |
T6014 |
punct |
(,dG |
R4045 |
T6016 |
T6014 |
punct |
),dG |
R4046 |
T6017 |
T6000 |
nummod |
3,tails |
R4047 |
T6018 |
T6017 |
punct |
′,3 |
R4048 |
T6019 |
T6000 |
punct |
-,tails |
R4049 |
T6020 |
T5989 |
prep |
in,constructed |
R4050 |
T6021 |
T6020 |
pobj |
order,in |
R4051 |
T6022 |
T6023 |
aux |
to,examine |
R4052 |
T6023 |
T6021 |
acl |
examine,order |
R4053 |
T6024 |
T6025 |
mark |
whether,displace |
R4054 |
T6025 |
T6023 |
ccomp |
displace,examine |
R4055 |
T6026 |
T6027 |
compound |
mouse,Mcm4 |
R4056 |
T6027 |
T6025 |
nsubj |
Mcm4,displace |
R4057 |
T6028 |
T6027 |
punct |
/,Mcm4 |
R4058 |
T6029 |
T6027 |
nummod |
6,Mcm4 |
R4059 |
T6030 |
T6027 |
punct |
/,Mcm4 |
R4060 |
T6031 |
T6027 |
nummod |
7,Mcm4 |
R4061 |
T6032 |
T6025 |
aux |
can,displace |
R4062 |
T6033 |
T6034 |
det |
these,substrates |
R4063 |
T6034 |
T6025 |
dobj |
substrates,displace |
R4064 |
T6035 |
T5989 |
punct |
.,constructed |
R4065 |
T6037 |
T6038 |
nsubj |
We,found |
R4066 |
T6039 |
T6038 |
advmod |
first,found |
R4067 |
T6040 |
T6041 |
mark |
that,binds |
R4068 |
T6041 |
T6038 |
ccomp |
binds,found |
R4069 |
T6042 |
T6041 |
nsubj |
Mcm4,binds |
R4070 |
T6043 |
T6042 |
punct |
/,Mcm4 |
R4071 |
T6044 |
T6042 |
nummod |
6,Mcm4 |
R4072 |
T6045 |
T6042 |
punct |
/,Mcm4 |
R4073 |
T6046 |
T6042 |
nummod |
7,Mcm4 |
R4074 |
T6047 |
T6041 |
prep |
to,binds |
R4075 |
T6048 |
T6049 |
nmod |
dT,extension |
R4076 |
T6049 |
T6047 |
pobj |
extension,to |
R4077 |
T6050 |
T6048 |
punct |
-,dT |
R4078 |
T6051 |
T6048 |
punct |
", ",dT |
R4079 |
T6052 |
T6048 |
conj |
dC,dT |
R4080 |
T6053 |
T6052 |
punct |
-,dC |
R4081 |
T6054 |
T6052 |
cc |
and,dC |
R4082 |
T6055 |
T6052 |
conj |
dG,dC |
R4083 |
T6056 |
T6049 |
punct |
-,extension |
R4084 |
T6057 |
T6049 |
nummod |
3,extension |
R4085 |
T6058 |
T6057 |
punct |
′,3 |
R4086 |
T6059 |
T6049 |
punct |
-,extension |
R4087 |
T6060 |
T6041 |
prep |
with,binds |
R4088 |
T6061 |
T6062 |
amod |
similar,affinity |
R4089 |
T6062 |
T6060 |
pobj |
affinity,with |
R4090 |
T6063 |
T6041 |
punct |
", ",binds |
R4091 |
T6064 |
T6041 |
cc |
and,binds |
R4092 |
T6065 |
T6041 |
conj |
to,binds |
R4093 |
T6066 |
T6067 |
nmod |
dA,extension |
R4094 |
T6067 |
T6065 |
pobj |
extension,to |
R4095 |
T6068 |
T6067 |
punct |
-,extension |
R4096 |
T6069 |
T6067 |
nummod |
3,extension |
R4097 |
T6070 |
T6069 |
punct |
′,3 |
R4098 |
T6071 |
T6067 |
punct |
-,extension |
R4099 |
T6072 |
T6065 |
prep |
with,to |
R4100 |
T6073 |
T6074 |
advmod |
much,lower |
R4101 |
T6074 |
T6075 |
amod |
lower,affinity |
R4102 |
T6075 |
T6072 |
pobj |
affinity,with |
R4103 |
T6076 |
T6077 |
punct |
(,5A |
R4104 |
T6077 |
T6065 |
parataxis |
5A,to |
R4105 |
T6078 |
T6077 |
compound |
Figure,5A |
R4106 |
T6079 |
T6077 |
punct |
),5A |
R4107 |
T6080 |
T6038 |
punct |
.,found |
R4108 |
T6082 |
T6083 |
nsubj |
This,is |
R4109 |
T6084 |
T6083 |
acomp |
consistent,is |
R4110 |
T6085 |
T6084 |
prep |
with,consistent |
R4111 |
T6086 |
T6087 |
det |
the,results |
R4112 |
T6087 |
T6085 |
pobj |
results,with |
R4113 |
T6088 |
T6087 |
amod |
previous,results |
R4114 |
T6089 |
T6090 |
mark |
that,binds |
R4115 |
T6090 |
T6087 |
acl |
binds,results |
R4116 |
T6091 |
T6090 |
nsubj |
Mcm4,binds |
R4117 |
T6092 |
T6091 |
punct |
/,Mcm4 |
R4118 |
T6093 |
T6091 |
nummod |
6,Mcm4 |
R4119 |
T6094 |
T6091 |
punct |
/,Mcm4 |
R4120 |
T6095 |
T6091 |
nummod |
7,Mcm4 |
R4121 |
T6096 |
T6090 |
prep |
to,binds |
R4122 |
T6097 |
T6098 |
compound |
50mer,dT |
R4123 |
T6098 |
T6096 |
pobj |
dT,to |
R4124 |
T6099 |
T6098 |
compound |
oligo,dT |
R4125 |
T6100 |
T6098 |
punct |
-,dT |
R4126 |
T6101 |
T6098 |
punct |
", ",dT |
R4127 |
T6102 |
T6103 |
punct |
-,dC |
R4128 |
T6103 |
T6098 |
conj |
dC,dT |
R4129 |
T6104 |
T6103 |
cc |
and,dC |
R4130 |
T6105 |
T6106 |
punct |
-,dG |
R4131 |
T6106 |
T6103 |
conj |
dG,dC |
R4132 |
T6107 |
T6096 |
punct |
", ",to |
R4133 |
T6108 |
T6096 |
cc |
but,to |
R4134 |
T6109 |
T6108 |
neg |
not,but |
R4135 |
T6110 |
T6096 |
conj |
to,to |
R4136 |
T6111 |
T6112 |
det |
a,dA |
R4137 |
T6112 |
T6110 |
pobj |
dA,to |
R4138 |
T6113 |
T6112 |
compound |
50mer,dA |
R4139 |
T6114 |
T6112 |
compound |
oligo,dA |
R4140 |
T6115 |
T6112 |
punct |
-,dA |
R4141 |
T6116 |
T6117 |
punct |
(,13 |
R4142 |
T6117 |
T6083 |
parataxis |
13,is |
R4143 |
T6118 |
T6117 |
punct |
),13 |
R4144 |
T6119 |
T6083 |
punct |
.,is |
R4145 |
T6121 |
T6122 |
nsubj |
We,found |
R4146 |
T6123 |
T6124 |
mark |
that,displaced |
R4147 |
T6124 |
T6122 |
ccomp |
displaced,found |
R4148 |
T6125 |
T6126 |
npadvmod |
dT,tailed |
R4149 |
T6126 |
T6128 |
amod |
tailed,extension |
R4150 |
T6127 |
T6126 |
punct |
-,tailed |
R4151 |
T6128 |
T6124 |
nsubjpass |
extension,displaced |
R4152 |
T6129 |
T6128 |
nummod |
3,extension |
R4153 |
T6130 |
T6129 |
punct |
′,3 |
R4154 |
T6131 |
T6128 |
punct |
-,extension |
R4155 |
T6132 |
T6124 |
auxpass |
was,displaced |
R4156 |
T6133 |
T6124 |
advmod |
efficiently,displaced |
R4157 |
T6134 |
T6124 |
agent |
by,displaced |
R4158 |
T6135 |
T6134 |
pobj |
Mcm,by |
R4159 |
T6136 |
T6135 |
nummod |
4,Mcm |
R4160 |
T6137 |
T6135 |
punct |
/,Mcm |
R4161 |
T6138 |
T6135 |
nummod |
6,Mcm |
R4162 |
T6139 |
T6135 |
punct |
/,Mcm |
R4163 |
T6140 |
T6135 |
nummod |
7,Mcm |
R4164 |
T6141 |
T6142 |
mark |
while,detected |
R4165 |
T6142 |
T6124 |
advcl |
detected,displaced |
R4166 |
T6143 |
T6144 |
advmod |
almost,no |
R4167 |
T6144 |
T6142 |
nsubjpass |
no,detected |
R4168 |
T6145 |
T6144 |
cc |
or,no |
R4169 |
T6146 |
T6147 |
advmod |
very,little |
R4170 |
T6147 |
T6148 |
nmod |
little,activity |
R4171 |
T6148 |
T6144 |
conj |
activity,no |
R4172 |
T6149 |
T6142 |
auxpass |
was,detected |
R4173 |
T6150 |
T6142 |
prep |
on,detected |
R4174 |
T6151 |
T6152 |
amod |
other,substrates |
R4175 |
T6152 |
T6150 |
pobj |
substrates,on |
R4176 |
T6153 |
T6154 |
punct |
(,5B |
R4177 |
T6154 |
T6142 |
parataxis |
5B,detected |
R4178 |
T6155 |
T6154 |
compound |
Figure,5B |
R4179 |
T6156 |
T6154 |
cc |
and,5B |
R4180 |
T6157 |
T6154 |
conj |
C,5B |
R4181 |
T6158 |
T6154 |
punct |
),5B |
R4182 |
T6159 |
T6122 |
punct |
.,found |
R4183 |
T6161 |
T6162 |
nsubj |
This,is |
R4184 |
T6163 |
T6162 |
prep |
in,is |
R4185 |
T6164 |
T6165 |
amod |
sharp,contrast |
R4186 |
T6165 |
T6163 |
pobj |
contrast,in |
R4187 |
T6166 |
T6165 |
prep |
to,contrast |
R4188 |
T6167 |
T6168 |
nmod |
yeast,helicases |
R4189 |
T6168 |
T6166 |
pobj |
helicases,to |
R4190 |
T6169 |
T6168 |
nmod |
Mcm4,helicases |
R4191 |
T6170 |
T6169 |
punct |
/,Mcm4 |
R4192 |
T6171 |
T6169 |
nummod |
6,Mcm4 |
R4193 |
T6172 |
T6169 |
punct |
/,Mcm4 |
R4194 |
T6173 |
T6169 |
nummod |
7,Mcm4 |
R4195 |
T6174 |
T6175 |
dep |
which,are |
R4196 |
T6175 |
T6168 |
relcl |
are,helicases |
R4197 |
T6176 |
T6175 |
neg |
not,are |
R4198 |
T6177 |
T6175 |
acomp |
capable,are |
R4199 |
T6178 |
T6177 |
prep |
of,capable |
R4200 |
T6179 |
T6178 |
pcomp |
unwinding,of |
R4201 |
T6180 |
T6181 |
nummod |
3,extension |
R4202 |
T6181 |
T6184 |
compound |
extension,substrates |
R4203 |
T6182 |
T6180 |
punct |
′,3 |
R4204 |
T6183 |
T6181 |
punct |
-,extension |
R4205 |
T6184 |
T6179 |
dobj |
substrates,unwinding |
R4206 |
T6185 |
T6162 |
punct |
.,is |
R4207 |
T6187 |
T6188 |
advmod |
Furthermore,displaced |
R4208 |
T6189 |
T6188 |
punct |
", ",displaced |
R4209 |
T6190 |
T6191 |
npadvmod |
dT,tailed |
R4210 |
T6191 |
T6193 |
amod |
tailed,extension |
R4211 |
T6192 |
T6191 |
punct |
-,tailed |
R4212 |
T6193 |
T6188 |
nsubjpass |
extension,displaced |
R4213 |
T6194 |
T6193 |
nummod |
5,extension |
R4214 |
T6195 |
T6194 |
punct |
′,5 |
R4215 |
T6196 |
T6193 |
punct |
-,extension |
R4216 |
T6197 |
T6193 |
punct |
", ",extension |
R4217 |
T6198 |
T6199 |
prep |
to,bind |
R4218 |
T6199 |
T6193 |
relcl |
bind,extension |
R4219 |
T6200 |
T6198 |
pobj |
which,to |
R4220 |
T6201 |
T6199 |
nsubj |
Mcm4,bind |
R4221 |
T6202 |
T6201 |
punct |
/,Mcm4 |
R4222 |
T6203 |
T6201 |
nummod |
6,Mcm4 |
R4223 |
T6204 |
T6201 |
punct |
/,Mcm4 |
R4224 |
T6205 |
T6201 |
nummod |
7,Mcm4 |
R4225 |
T6206 |
T6199 |
aux |
could,bind |
R4226 |
T6207 |
T6188 |
punct |
", ",displaced |
R4227 |
T6208 |
T6188 |
auxpass |
was,displaced |
R4228 |
T6209 |
T6188 |
neg |
not,displaced |
R4229 |
T6210 |
T6188 |
agent |
by,displaced |
R4230 |
T6211 |
T6212 |
det |
the,helicase |
R4231 |
T6212 |
T6210 |
pobj |
helicase,by |
R4232 |
T6213 |
T6212 |
compound |
Mcm,helicase |
R4233 |
T6214 |
T6188 |
punct |
.,displaced |
R4234 |
T6216 |
T6217 |
det |
The,addition |
R4235 |
T6217 |
T6218 |
nsubj |
addition,stimulated |
R4236 |
T6219 |
T6217 |
prep |
of,addition |
R4237 |
T6220 |
T6221 |
det |
the,tail |
R4238 |
T6221 |
T6219 |
pobj |
tail,of |
R4239 |
T6222 |
T6221 |
nummod |
5,tail |
R4240 |
T6223 |
T6222 |
punct |
′,5 |
R4241 |
T6224 |
T6221 |
punct |
-,tail |
R4242 |
T6225 |
T6217 |
prep |
to,addition |
R4243 |
T6226 |
T6227 |
npadvmod |
dT,tailed |
R4244 |
T6227 |
T6229 |
amod |
tailed,extension |
R4245 |
T6228 |
T6227 |
punct |
-,tailed |
R4246 |
T6229 |
T6225 |
pobj |
extension,to |
R4247 |
T6230 |
T6229 |
nummod |
3,extension |
R4248 |
T6231 |
T6230 |
punct |
′,3 |
R4249 |
T6232 |
T6229 |
punct |
-,extension |
R4250 |
T6233 |
T6218 |
advmod |
further,stimulated |
R4251 |
T6234 |
T6235 |
det |
the,displacement |
R4252 |
T6235 |
T6218 |
dobj |
displacement,stimulated |
R4253 |
T6236 |
T6237 |
punct |
(,5D |
R4254 |
T6237 |
T6235 |
parataxis |
5D,displacement |
R4255 |
T6238 |
T6237 |
compound |
Figure,5D |
R4256 |
T6239 |
T6237 |
punct |
),5D |
R4257 |
T6240 |
T6218 |
punct |
", ",stimulated |
R4258 |
T6241 |
T6218 |
advcl |
confirming,stimulated |
R4259 |
T6242 |
T6243 |
det |
the,report |
R4260 |
T6243 |
T6241 |
dobj |
report,confirming |
R4261 |
T6244 |
T6243 |
amod |
previous,report |
R4262 |
T6245 |
T6246 |
mark |
that,facilitate |
R4263 |
T6246 |
T6243 |
acl |
facilitate,report |
R4264 |
T6247 |
T6248 |
det |
the,structures |
R4265 |
T6248 |
T6246 |
nsubj |
structures,facilitate |
R4266 |
T6249 |
T6248 |
compound |
fork,structures |
R4267 |
T6250 |
T6251 |
det |
the,action |
R4268 |
T6251 |
T6246 |
dobj |
action,facilitate |
R4269 |
T6252 |
T6251 |
compound |
helicase,action |
R4270 |
T6253 |
T6218 |
punct |
.,stimulated |
R4271 |
T6255 |
T6256 |
advmod |
Thus,strengthen |
R4272 |
T6257 |
T6256 |
punct |
", ",strengthen |
R4273 |
T6258 |
T6259 |
det |
these,results |
R4274 |
T6259 |
T6256 |
nsubj |
results,strengthen |
R4275 |
T6260 |
T6256 |
advmod |
further,strengthen |
R4276 |
T6261 |
T6262 |
poss |
our,conclusion |
R4277 |
T6262 |
T6256 |
dobj |
conclusion,strengthen |
R4278 |
T6263 |
T6264 |
mark |
that,activated |
R4279 |
T6264 |
T6262 |
acl |
activated,conclusion |
R4280 |
T6265 |
T6266 |
det |
the,helicase |
R4281 |
T6266 |
T6264 |
nsubjpass |
helicase,activated |
R4282 |
T6267 |
T6266 |
amod |
mammalian,helicase |
R4283 |
T6268 |
T6266 |
compound |
Mcm,helicase |
R4284 |
T6269 |
T6264 |
auxpass |
is,activated |
R4285 |
T6270 |
T6264 |
advmod |
generally,activated |
R4286 |
T6271 |
T6264 |
agent |
by,activated |
R4287 |
T6272 |
T6273 |
det |
the,stretch |
R4288 |
T6273 |
T6271 |
pobj |
stretch,by |
R4289 |
T6274 |
T6273 |
compound |
thymine,stretch |
R4290 |
T6275 |
T6273 |
punct |
-,stretch |
R4291 |
T6276 |
T6273 |
prep |
on,stretch |
R4292 |
T6277 |
T6278 |
det |
the,tail |
R4293 |
T6278 |
T6276 |
pobj |
tail,on |
R4294 |
T6279 |
T6278 |
nummod |
3,tail |
R4295 |
T6280 |
T6279 |
punct |
′,3 |
R4296 |
T6281 |
T6278 |
punct |
-,tail |
R4297 |
T6282 |
T6283 |
amod |
single,stranded |
R4298 |
T6283 |
T6278 |
amod |
stranded,tail |
R4299 |
T6284 |
T6283 |
punct |
-,stranded |
R4300 |
T6285 |
T6256 |
punct |
.,strengthen |
R4301 |
T6404 |
T6405 |
det |
The,effects |
R4302 |
T6406 |
T6405 |
prep |
of,effects |
R4303 |
T6407 |
T6408 |
det |
the,content |
R4304 |
T6408 |
T6406 |
pobj |
content,of |
R4305 |
T6409 |
T6408 |
compound |
thymine,content |
R4306 |
T6410 |
T6408 |
prep |
of,content |
R4307 |
T6411 |
T6412 |
det |
the,tail |
R4308 |
T6412 |
T6410 |
pobj |
tail,of |
R4309 |
T6413 |
T6412 |
nummod |
3,tail |
R4310 |
T6414 |
T6413 |
punct |
′,3 |
R4311 |
T6415 |
T6412 |
punct |
-,tail |
R4312 |
T6416 |
T6405 |
prep |
on,effects |
R4313 |
T6417 |
T6418 |
compound |
Mcm,helicase |
R4314 |
T6418 |
T6419 |
compound |
helicase,activity |
R4315 |
T6419 |
T6416 |
pobj |
activity,on |
R4316 |
T6421 |
T6422 |
nsubj |
We,examined |
R4317 |
T6423 |
T6422 |
advmod |
next,examined |
R4318 |
T6424 |
T6425 |
advmod |
more,systematically |
R4319 |
T6425 |
T6422 |
advmod |
systematically,examined |
R4320 |
T6426 |
T6427 |
det |
the,effect |
R4321 |
T6427 |
T6422 |
dobj |
effect,examined |
R4322 |
T6428 |
T6427 |
prep |
of,effect |
R4323 |
T6429 |
T6430 |
det |
the,compositions |
R4324 |
T6430 |
T6428 |
pobj |
compositions,of |
R4325 |
T6431 |
T6430 |
prep |
of,compositions |
R4326 |
T6432 |
T6433 |
det |
the,residues |
R4327 |
T6433 |
T6431 |
pobj |
residues,of |
R4328 |
T6434 |
T6433 |
compound |
thymine,residues |
R4329 |
T6435 |
T6433 |
prep |
of,residues |
R4330 |
T6436 |
T6437 |
det |
the,tail |
R4331 |
T6437 |
T6435 |
pobj |
tail,of |
R4332 |
T6438 |
T6437 |
nummod |
3,tail |
R4333 |
T6439 |
T6438 |
punct |
′,3 |
R4334 |
T6440 |
T6437 |
punct |
-,tail |
R4335 |
T6441 |
T6427 |
prep |
on,effect |
R4336 |
T6442 |
T6443 |
det |
the,activity |
R4337 |
T6443 |
T6441 |
pobj |
activity,on |
R4338 |
T6444 |
T6445 |
compound |
Mcm,helicase |
R4339 |
T6445 |
T6443 |
compound |
helicase,activity |
R4340 |
T6446 |
T6422 |
punct |
.,examined |
R4341 |
T6448 |
T6449 |
det |
A,DNA |
R4342 |
T6449 |
T6456 |
nsubjpass |
DNA,constructed |
R4343 |
T6450 |
T6449 |
amod |
partial,DNA |
R4344 |
T6451 |
T6449 |
nmod |
heteroduplex,DNA |
R4345 |
T6452 |
T6449 |
nmod |
M13,DNA |
R4346 |
T6453 |
T6454 |
amod |
single,stranded |
R4347 |
T6454 |
T6449 |
amod |
stranded,DNA |
R4348 |
T6455 |
T6454 |
punct |
-,stranded |
R4349 |
T6457 |
T6449 |
acl |
containing,DNA |
R4350 |
T6458 |
T6459 |
det |
a,region |
R4351 |
T6459 |
T6457 |
dobj |
region,containing |
R4352 |
T6460 |
T6461 |
nummod |
37,bp |
R4353 |
T6461 |
T6459 |
compound |
bp,region |
R4354 |
T6462 |
T6459 |
compound |
duplex,region |
R4355 |
T6463 |
T6457 |
prep |
in,containing |
R4356 |
T6464 |
T6465 |
det |
the,presence |
R4357 |
T6465 |
T6463 |
pobj |
presence,in |
R4358 |
T6466 |
T6465 |
cc |
or,presence |
R4359 |
T6467 |
T6465 |
conj |
absence,presence |
R4360 |
T6468 |
T6465 |
prep |
of,presence |
R4361 |
T6469 |
T6470 |
det |
the,tail |
R4362 |
T6470 |
T6468 |
pobj |
tail,of |
R4363 |
T6471 |
T6472 |
nummod |
50,nt |
R4364 |
T6472 |
T6473 |
npadvmod |
nt,long |
R4365 |
T6473 |
T6470 |
amod |
long,tail |
R4366 |
T6474 |
T6470 |
nummod |
3,tail |
R4367 |
T6475 |
T6474 |
punct |
′,3 |
R4368 |
T6476 |
T6470 |
punct |
-,tail |
R4369 |
T6477 |
T6470 |
prep |
of,tail |
R4370 |
T6478 |
T6479 |
amod |
various,compositions |
R4371 |
T6479 |
T6477 |
pobj |
compositions,of |
R4372 |
T6480 |
T6479 |
compound |
nucleotide,compositions |
R4373 |
T6481 |
T6456 |
auxpass |
were,constructed |
R4374 |
T6482 |
T6456 |
cc |
and,constructed |
R4375 |
T6483 |
T6484 |
det |
the,unwinding |
R4376 |
T6484 |
T6485 |
nsubjpass |
unwinding,examined |
R4377 |
T6485 |
T6456 |
conj |
examined,constructed |
R4378 |
T6486 |
T6484 |
prep |
by,unwinding |
R4379 |
T6487 |
T6488 |
compound |
mouse,Mcm4 |
R4380 |
T6488 |
T6486 |
pobj |
Mcm4,by |
R4381 |
T6489 |
T6488 |
punct |
/,Mcm4 |
R4382 |
T6490 |
T6488 |
nummod |
6,Mcm4 |
R4383 |
T6491 |
T6488 |
punct |
/,Mcm4 |
R4384 |
T6492 |
T6488 |
nummod |
7,Mcm4 |
R4385 |
T6493 |
T6485 |
auxpass |
was,examined |
R4386 |
T6494 |
T6495 |
punct |
(,6A |
R4387 |
T6495 |
T6485 |
parataxis |
6A,examined |
R4388 |
T6496 |
T6495 |
compound |
Figure,6A |
R4389 |
T6497 |
T6495 |
punct |
),6A |
R4390 |
T6498 |
T6485 |
punct |
.,examined |
R4391 |
T6500 |
T6501 |
prep |
Due,displaced |
R4392 |
T6502 |
T6500 |
pcomp |
to,Due |
R4393 |
T6503 |
T6504 |
poss |
its,processivity |
R4394 |
T6504 |
T6500 |
pobj |
processivity,Due |
R4395 |
T6505 |
T6504 |
amod |
low,processivity |
R4396 |
T6506 |
T6501 |
punct |
", ",displaced |
R4397 |
T6507 |
T6501 |
nsubj |
Mcm4,displaced |
R4398 |
T6508 |
T6507 |
punct |
/,Mcm4 |
R4399 |
T6509 |
T6507 |
nummod |
6,Mcm4 |
R4400 |
T6510 |
T6507 |
punct |
/,Mcm4 |
R4401 |
T6511 |
T6507 |
nummod |
7,Mcm4 |
R4402 |
T6512 |
T6501 |
advmod |
barely,displaced |
R4403 |
T6513 |
T6514 |
det |
the,oligonucleotide |
R4404 |
T6514 |
T6501 |
dobj |
oligonucleotide,displaced |
R4405 |
T6515 |
T6514 |
amod |
annealed,oligonucleotide |
R4406 |
T6516 |
T6514 |
compound |
37mer,oligonucleotide |
R4407 |
T6517 |
T6514 |
prep |
without,oligonucleotide |
R4408 |
T6518 |
T6519 |
det |
a,tail |
R4409 |
T6519 |
T6517 |
pobj |
tail,without |
R4410 |
T6520 |
T6519 |
nummod |
3,tail |
R4411 |
T6521 |
T6520 |
punct |
′,3 |
R4412 |
T6522 |
T6519 |
punct |
-,tail |
R4413 |
T6523 |
T6524 |
punct |
(,6A |
R4414 |
T6524 |
T6514 |
parataxis |
6A,oligonucleotide |
R4415 |
T6525 |
T6524 |
dep |
37mer,6A |
R4416 |
T6526 |
T6524 |
punct |
;,6A |
R4417 |
T6527 |
T6524 |
compound |
Figure,6A |
R4418 |
T6528 |
T6524 |
punct |
),6A |
R4419 |
T6529 |
T6501 |
punct |
.,displaced |
R4420 |
T6531 |
T6532 |
advmod |
Only,activity |
R4421 |
T6532 |
T6535 |
nsubjpass |
activity,observed |
R4422 |
T6533 |
T6532 |
amod |
weak,activity |
R4423 |
T6534 |
T6532 |
compound |
helicase,activity |
R4424 |
T6536 |
T6535 |
auxpass |
was,observed |
R4425 |
T6537 |
T6535 |
prep |
on,observed |
R4426 |
T6538 |
T6539 |
det |
the,substrate |
R4427 |
T6539 |
T6537 |
pobj |
substrate,on |
R4428 |
T6540 |
T6539 |
acl |
carrying,substrate |
R4429 |
T6541 |
T6542 |
det |
the,tail |
R4430 |
T6542 |
T6540 |
dobj |
tail,carrying |
R4431 |
T6543 |
T6542 |
nummod |
3,tail |
R4432 |
T6544 |
T6543 |
punct |
′,3 |
R4433 |
T6545 |
T6542 |
punct |
-,tail |
R4434 |
T6546 |
T6542 |
prep |
of,tail |
R4435 |
T6547 |
T6548 |
nummod |
25,repeats |
R4436 |
T6548 |
T6546 |
pobj |
repeats,of |
R4437 |
T6549 |
T6548 |
prep |
of,repeats |
R4438 |
T6550 |
T6551 |
compound |
TA,dinucleotide |
R4439 |
T6551 |
T6549 |
pobj |
dinucleotide,of |
R4440 |
T6552 |
T6553 |
punct |
(,6A |
R4441 |
T6553 |
T6540 |
parataxis |
6A,carrying |
R4442 |
T6554 |
T6555 |
nummod |
37,TA25 |
R4443 |
T6555 |
T6553 |
dep |
TA25,6A |
R4444 |
T6556 |
T6555 |
punct |
-,TA25 |
R4445 |
T6557 |
T6553 |
punct |
;,6A |
R4446 |
T6558 |
T6553 |
compound |
Figure,6A |
R4447 |
T6559 |
T6553 |
punct |
),6A |
R4448 |
T6560 |
T6535 |
punct |
", ",observed |
R4449 |
T6561 |
T6562 |
mark |
whereas,observed |
R4450 |
T6562 |
T6535 |
advcl |
observed,observed |
R4451 |
T6563 |
T6564 |
amod |
strong,activity |
R4452 |
T6564 |
T6562 |
nsubjpass |
activity,observed |
R4453 |
T6565 |
T6564 |
compound |
helicase,activity |
R4454 |
T6566 |
T6562 |
auxpass |
was,observed |
R4455 |
T6567 |
T6562 |
prep |
on,observed |
R4456 |
T6568 |
T6569 |
nummod |
37,TTA17 |
R4457 |
T6569 |
T6567 |
pobj |
TTA17,on |
R4458 |
T6570 |
T6569 |
punct |
-,TTA17 |
R4459 |
T6571 |
T6535 |
punct |
.,observed |
R4460 |
T6573 |
T6574 |
nsubj |
Increase,increase |
R4461 |
T6575 |
T6573 |
prep |
of,Increase |
R4462 |
T6576 |
T6577 |
compound |
thymine,content |
R4463 |
T6577 |
T6575 |
pobj |
content,of |
R4464 |
T6578 |
T6573 |
prep |
on,Increase |
R4465 |
T6579 |
T6580 |
det |
the,tail |
R4466 |
T6580 |
T6578 |
pobj |
tail,on |
R4467 |
T6581 |
T6580 |
nummod |
3,tail |
R4468 |
T6582 |
T6581 |
punct |
′,3 |
R4469 |
T6583 |
T6580 |
punct |
-,tail |
R4470 |
T6584 |
T6574 |
aux |
did,increase |
R4471 |
T6585 |
T6574 |
neg |
not,increase |
R4472 |
T6586 |
T6574 |
advmod |
further,increase |
R4473 |
T6587 |
T6588 |
det |
the,extent |
R4474 |
T6588 |
T6574 |
dobj |
extent,increase |
R4475 |
T6589 |
T6588 |
prep |
of,extent |
R4476 |
T6590 |
T6589 |
pobj |
unwinding,of |
R4477 |
T6591 |
T6592 |
punct |
(,6A |
R4478 |
T6592 |
T6590 |
parataxis |
6A,unwinding |
R4479 |
T6593 |
T6594 |
nummod |
37,TTTA13 |
R4480 |
T6594 |
T6592 |
dep |
TTTA13,6A |
R4481 |
T6595 |
T6594 |
punct |
-,TTTA13 |
R4482 |
T6596 |
T6594 |
punct |
", ",TTTA13 |
R4483 |
T6597 |
T6598 |
nummod |
37,TTTTA10 |
R4484 |
T6598 |
T6594 |
conj |
TTTTA10,TTTA13 |
R4485 |
T6599 |
T6598 |
punct |
-,TTTTA10 |
R4486 |
T6600 |
T6598 |
cc |
and,TTTTA10 |
R4487 |
T6601 |
T6602 |
nummod |
37,T50 |
R4488 |
T6602 |
T6598 |
conj |
T50,TTTTA10 |
R4489 |
T6603 |
T6602 |
punct |
-,T50 |
R4490 |
T6604 |
T6592 |
punct |
;,6A |
R4491 |
T6605 |
T6592 |
compound |
Figure,6A |
R4492 |
T6606 |
T6592 |
punct |
),6A |
R4493 |
T6607 |
T6574 |
punct |
", ",increase |
R4494 |
T6608 |
T6574 |
advcl |
suggesting,increase |
R4495 |
T6609 |
T6610 |
mark |
that,be |
R4496 |
T6610 |
T6608 |
ccomp |
be,suggesting |
R4497 |
T6611 |
T6612 |
nummod |
17,repeats |
R4498 |
T6612 |
T6610 |
nsubj |
repeats,be |
R4499 |
T6613 |
T6612 |
prep |
of,repeats |
R4500 |
T6614 |
T6615 |
compound |
TT,dinucleotides |
R4501 |
T6615 |
T6613 |
pobj |
dinucleotides,of |
R4502 |
T6616 |
T6617 |
punct |
(,thymine |
R4503 |
T6617 |
T6615 |
parataxis |
thymine,dinucleotides |
R4504 |
T6618 |
T6619 |
nummod |
67,% |
R4505 |
T6619 |
T6617 |
compound |
%,thymine |
R4506 |
T6620 |
T6617 |
punct |
),thymine |
R4507 |
T6621 |
T6610 |
aux |
may,be |
R4508 |
T6622 |
T6610 |
acomp |
sufficient,be |
R4509 |
T6623 |
T6622 |
prep |
for,sufficient |
R4510 |
T6624 |
T6623 |
pobj |
activation,for |
R4511 |
T6625 |
T6624 |
prep |
of,activation |
R4512 |
T6626 |
T6627 |
compound |
Mcm,helicase |
R4513 |
T6627 |
T6625 |
pobj |
helicase,of |
R4514 |
T6628 |
T6574 |
punct |
.,increase |
R4515 |
T6630 |
T6631 |
nsubjpass |
It,noted |
R4516 |
T6632 |
T6631 |
aux |
should,noted |
R4517 |
T6633 |
T6631 |
auxpass |
be,noted |
R4518 |
T6634 |
T6635 |
mark |
that,anneal |
R4519 |
T6635 |
T6631 |
ccomp |
anneal,noted |
R4520 |
T6636 |
T6637 |
det |
the,tail |
R4521 |
T6637 |
T6635 |
nsubj |
tail,anneal |
R4522 |
T6638 |
T6637 |
compound |
TA25,tail |
R4523 |
T6639 |
T6635 |
aux |
would,anneal |
R4524 |
T6640 |
T6635 |
dep |
self,anneal |
R4525 |
T6641 |
T6635 |
punct |
-,anneal |
R4526 |
T6642 |
T6635 |
cc |
and,anneal |
R4527 |
T6643 |
T6644 |
nsubj |
this,prevent |
R4528 |
T6644 |
T6635 |
conj |
prevent,anneal |
R4529 |
T6645 |
T6644 |
aux |
would,prevent |
R4530 |
T6646 |
T6647 |
det |
the,loading |
R4531 |
T6647 |
T6644 |
dobj |
loading,prevent |
R4532 |
T6648 |
T6647 |
prep |
of,loading |
R4533 |
T6649 |
T6648 |
pobj |
Mcm,of |
R4534 |
T6650 |
T6631 |
punct |
", ",noted |
R4535 |
T6651 |
T6652 |
mark |
since,enhance |
R4536 |
T6652 |
T6631 |
advcl |
enhance,noted |
R4537 |
T6653 |
T6654 |
det |
the,tail |
R4538 |
T6654 |
T6652 |
nsubj |
tail,enhance |
R4539 |
T6655 |
T6654 |
nummod |
3,tail |
R4540 |
T6656 |
T6655 |
punct |
′,3 |
R4541 |
T6657 |
T6654 |
punct |
-,tail |
R4542 |
T6658 |
T6654 |
acl |
containing,tail |
R4543 |
T6659 |
T6658 |
dobj |
TTAA13,containing |
R4544 |
T6660 |
T6659 |
cc |
or,TTAA13 |
R4545 |
T6661 |
T6659 |
conj |
TTTAAA8,TTAA13 |
R4546 |
T6662 |
T6652 |
aux |
did,enhance |
R4547 |
T6663 |
T6652 |
neg |
not,enhance |
R4548 |
T6664 |
T6665 |
det |
the,unwinding |
R4549 |
T6665 |
T6652 |
dobj |
unwinding,enhance |
R4550 |
T6666 |
T6652 |
advmod |
either,enhance |
R4551 |
T6667 |
T6668 |
punct |
(,shown |
R4552 |
T6668 |
T6652 |
parataxis |
shown,enhance |
R4553 |
T6669 |
T6668 |
nsubj |
data,shown |
R4554 |
T6670 |
T6668 |
neg |
not,shown |
R4555 |
T6671 |
T6668 |
punct |
),shown |
R4556 |
T6672 |
T6631 |
punct |
.,noted |
R4557 |
T6674 |
T6675 |
advmod |
Therefore,examined |
R4558 |
T6676 |
T6675 |
punct |
", ",examined |
R4559 |
T6677 |
T6675 |
nsubj |
we,examined |
R4560 |
T6678 |
T6675 |
advmod |
next,examined |
R4561 |
T6679 |
T6680 |
det |
the,effects |
R4562 |
T6680 |
T6675 |
dobj |
effects,examined |
R4563 |
T6681 |
T6680 |
prep |
of,effects |
R4564 |
T6682 |
T6683 |
amod |
repeating,sequences |
R4565 |
T6683 |
T6681 |
pobj |
sequences,of |
R4566 |
T6684 |
T6683 |
prep |
of,sequences |
R4567 |
T6685 |
T6684 |
pobj |
thymine,of |
R4568 |
T6686 |
T6685 |
cc |
and,thymine |
R4569 |
T6687 |
T6685 |
conj |
cytosine,thymine |
R4570 |
T6688 |
T6689 |
punct |
(,6B |
R4571 |
T6689 |
T6675 |
parataxis |
6B,examined |
R4572 |
T6690 |
T6689 |
compound |
Figure,6B |
R4573 |
T6691 |
T6689 |
punct |
),6B |
R4574 |
T6692 |
T6675 |
punct |
.,examined |
R4575 |
T6694 |
T6695 |
amod |
Partial,substrates |
R4576 |
T6695 |
T6697 |
nsubjpass |
substrates,displaced |
R4577 |
T6696 |
T6695 |
compound |
heteroduplex,substrates |
R4578 |
T6698 |
T6695 |
acl |
containing,substrates |
R4579 |
T6699 |
T6700 |
det |
the,tail |
R4580 |
T6700 |
T6698 |
dobj |
tail,containing |
R4581 |
T6701 |
T6700 |
nummod |
3,tail |
R4582 |
T6702 |
T6701 |
punct |
′,3 |
R4583 |
T6703 |
T6700 |
punct |
-,tail |
R4584 |
T6704 |
T6700 |
prep |
of,tail |
R4585 |
T6705 |
T6706 |
nmod |
TC25,TTCC17 |
R4586 |
T6706 |
T6704 |
pobj |
TTCC17,of |
R4587 |
T6707 |
T6706 |
punct |
", ",TTCC17 |
R4588 |
T6708 |
T6706 |
nmod |
TTCC13,TTCC17 |
R4589 |
T6709 |
T6706 |
punct |
", ",TTCC17 |
R4590 |
T6710 |
T6706 |
nmod |
TTTCCC8,TTCC17 |
R4591 |
T6711 |
T6706 |
punct |
", ",TTCC17 |
R4592 |
T6712 |
T6706 |
nmod |
TTTTCCCC6,TTCC17 |
R4593 |
T6713 |
T6706 |
punct |
", ",TTCC17 |
R4594 |
T6714 |
T6697 |
auxpass |
were,displaced |
R4595 |
T6715 |
T6697 |
agent |
by,displaced |
R4596 |
T6716 |
T6717 |
det |
the,complex |
R4597 |
T6717 |
T6715 |
pobj |
complex,by |
R4598 |
T6718 |
T6717 |
nmod |
Mcm4,complex |
R4599 |
T6719 |
T6718 |
punct |
/,Mcm4 |
R4600 |
T6720 |
T6718 |
nummod |
6,Mcm4 |
R4601 |
T6721 |
T6718 |
punct |
/,Mcm4 |
R4602 |
T6722 |
T6718 |
nummod |
7,Mcm4 |
R4603 |
T6723 |
T6697 |
prep |
to,displaced |
R4604 |
T6724 |
T6725 |
det |
the,extent |
R4605 |
T6725 |
T6723 |
pobj |
extent,to |
R4606 |
T6726 |
T6725 |
amod |
similar,extent |
R4607 |
T6727 |
T6726 |
prep |
to,similar |
R4608 |
T6728 |
T6727 |
pobj |
that,to |
R4609 |
T6729 |
T6728 |
acl |
achieved,that |
R4610 |
T6730 |
T6729 |
agent |
by,achieved |
R4611 |
T6731 |
T6730 |
pobj |
TTA17,by |
R4612 |
T6732 |
T6697 |
punct |
", ",displaced |
R4613 |
T6733 |
T6697 |
advcl |
suggesting,displaced |
R4614 |
T6734 |
T6735 |
mark |
that,is |
R4615 |
T6735 |
T6733 |
ccomp |
is,suggesting |
R4616 |
T6736 |
T6737 |
nummod |
50,% |
R4617 |
T6737 |
T6738 |
compound |
%,content |
R4618 |
T6738 |
T6735 |
nsubj |
content,is |
R4619 |
T6739 |
T6738 |
compound |
thymine,content |
R4620 |
T6740 |
T6735 |
acomp |
sufficient,is |
R4621 |
T6741 |
T6740 |
prep |
for,sufficient |
R4622 |
T6742 |
T6743 |
amod |
full,activation |
R4623 |
T6743 |
T6741 |
pobj |
activation,for |
R4624 |
T6744 |
T6743 |
prep |
of,activation |
R4625 |
T6745 |
T6746 |
compound |
Mcm,helicase |
R4626 |
T6746 |
T6744 |
pobj |
helicase,of |
R4627 |
T6747 |
T6697 |
punct |
.,displaced |
R4628 |
T6749 |
T6750 |
nsubjpass |
TTCC13,displaced |
R4629 |
T6751 |
T6749 |
cc |
and,TTCC13 |
R4630 |
T6752 |
T6749 |
conj |
TTCC17,TTCC13 |
R4631 |
T6753 |
T6750 |
auxpass |
were,displaced |
R4632 |
T6754 |
T6750 |
prep |
to,displaced |
R4633 |
T6755 |
T6756 |
det |
a,extent |
R4634 |
T6756 |
T6754 |
pobj |
extent,to |
R4635 |
T6757 |
T6756 |
amod |
similar,extent |
R4636 |
T6758 |
T6750 |
punct |
", ",displaced |
R4637 |
T6759 |
T6750 |
advcl |
consistent,displaced |
R4638 |
T6760 |
T6759 |
prep |
with,consistent |
R4639 |
T6761 |
T6762 |
det |
the,result |
R4640 |
T6762 |
T6760 |
pobj |
result,with |
R4641 |
T6763 |
T6762 |
amod |
earlier,result |
R4642 |
T6764 |
T6765 |
mark |
that,is |
R4643 |
T6765 |
T6762 |
acl |
is,result |
R4644 |
T6766 |
T6767 |
det |
a,tail |
R4645 |
T6767 |
T6765 |
nsubj |
tail,is |
R4646 |
T6768 |
T6769 |
nummod |
40,nt |
R4647 |
T6769 |
T6767 |
compound |
nt,tail |
R4648 |
T6770 |
T6765 |
acomp |
sufficient,is |
R4649 |
T6771 |
T6770 |
prep |
for,sufficient |
R4650 |
T6772 |
T6771 |
pobj |
activation,for |
R4651 |
T6773 |
T6774 |
punct |
(,13 |
R4652 |
T6774 |
T6765 |
parataxis |
13,is |
R4653 |
T6775 |
T6774 |
punct |
),13 |
R4654 |
T6776 |
T6750 |
punct |
.,displaced |
R4655 |
T6778 |
T6779 |
advmod |
However,decreased |
R4656 |
T6780 |
T6779 |
punct |
", ",decreased |
R4657 |
T6781 |
T6782 |
det |
the,efficiency |
R4658 |
T6782 |
T6779 |
nsubj |
efficiency,decreased |
R4659 |
T6783 |
T6782 |
prep |
of,efficiency |
R4660 |
T6784 |
T6785 |
det |
the,displacement |
R4661 |
T6785 |
T6783 |
pobj |
displacement,of |
R4662 |
T6786 |
T6779 |
advmod |
significantly,decreased |
R4663 |
T6787 |
T6788 |
mark |
as,dropped |
R4664 |
T6788 |
T6779 |
advcl |
dropped,decreased |
R4665 |
T6789 |
T6790 |
det |
the,content |
R4666 |
T6790 |
T6788 |
nsubj |
content,dropped |
R4667 |
T6791 |
T6790 |
compound |
thymine,content |
R4668 |
T6792 |
T6790 |
prep |
of,content |
R4669 |
T6793 |
T6794 |
det |
the,tail |
R4670 |
T6794 |
T6792 |
pobj |
tail,of |
R4671 |
T6795 |
T6794 |
nummod |
3,tail |
R4672 |
T6796 |
T6795 |
punct |
′,3 |
R4673 |
T6797 |
T6794 |
punct |
-,tail |
R4674 |
T6798 |
T6788 |
prep |
to,dropped |
R4675 |
T6799 |
T6800 |
nummod |
33,% |
R4676 |
T6800 |
T6798 |
pobj |
%,to |
R4677 |
T6801 |
T6788 |
punct |
", ",dropped |
R4678 |
T6802 |
T6788 |
prep |
as,dropped |
R4679 |
T6803 |
T6802 |
prep |
in,as |
R4680 |
T6804 |
T6803 |
pobj |
TAA17,in |
R4681 |
T6805 |
T6804 |
cc |
or,TAA17 |
R4682 |
T6806 |
T6804 |
conj |
TCC17,TAA17 |
R4683 |
T6807 |
T6808 |
punct |
(,6B |
R4684 |
T6808 |
T6788 |
parataxis |
6B,dropped |
R4685 |
T6809 |
T6808 |
compound |
Figure,6B |
R4686 |
T6810 |
T6808 |
cc |
and,6B |
R4687 |
T6811 |
T6808 |
conj |
C,6B |
R4688 |
T6812 |
T6808 |
punct |
),6B |
R4689 |
T6813 |
T6779 |
punct |
.,decreased |
R4690 |
T6815 |
T6816 |
advmod |
Thus,be |
R4691 |
T6817 |
T6816 |
punct |
", ",be |
R4692 |
T6818 |
T6819 |
det |
the,content |
R4693 |
T6819 |
T6816 |
nsubj |
content,be |
R4694 |
T6820 |
T6819 |
amod |
minimal,content |
R4695 |
T6821 |
T6819 |
compound |
thymine,content |
R4696 |
T6822 |
T6819 |
acl |
required,content |
R4697 |
T6823 |
T6822 |
prep |
for,required |
R4698 |
T6824 |
T6823 |
pobj |
activation,for |
R4699 |
T6825 |
T6824 |
prep |
of,activation |
R4700 |
T6826 |
T6827 |
det |
the,helicase |
R4701 |
T6827 |
T6825 |
pobj |
helicase,of |
R4702 |
T6828 |
T6827 |
compound |
Mcm,helicase |
R4703 |
T6829 |
T6816 |
aux |
may,be |
R4704 |
T6830 |
T6816 |
advmod |
somewhere,be |
R4705 |
T6831 |
T6830 |
prep |
between,somewhere |
R4706 |
T6832 |
T6833 |
nummod |
33,% |
R4707 |
T6833 |
T6831 |
pobj |
%,between |
R4708 |
T6834 |
T6832 |
cc |
and,33 |
R4709 |
T6835 |
T6832 |
conj |
50,33 |
R4710 |
T6836 |
T6816 |
punct |
.,be |
R4711 |
T7008 |
T7009 |
compound |
DUE,sequences |
R4712 |
T7009 |
T7010 |
nsubj |
sequences,activate |
R4713 |
T7011 |
T7009 |
prep |
from,sequences |
R4714 |
T7012 |
T7013 |
det |
the,origin |
R4715 |
T7013 |
T7011 |
pobj |
origin,from |
R4716 |
T7014 |
T7015 |
compound |
c,myc |
R4717 |
T7015 |
T7013 |
compound |
myc,origin |
R4718 |
T7016 |
T7015 |
punct |
-,myc |
R4719 |
T7017 |
T7018 |
compound |
Mcm,helicase |
R4720 |
T7018 |
T7010 |
dobj |
helicase,activate |
R4721 |
T7020 |
T7021 |
poss |
Our,studies |
R4722 |
T7021 |
T7023 |
nsubj |
studies,shown |
R4723 |
T7022 |
T7021 |
amod |
previous,studies |
R4724 |
T7024 |
T7023 |
aux |
have,shown |
R4725 |
T7025 |
T7026 |
mark |
that,serve |
R4726 |
T7026 |
T7023 |
ccomp |
serve,shown |
R4727 |
T7027 |
T7028 |
det |
the,sequences |
R4728 |
T7028 |
T7026 |
nsubj |
sequences,serve |
R4729 |
T7029 |
T7028 |
acl |
containing,sequences |
R4730 |
T7030 |
T7031 |
amod |
periodic,tracts |
R4731 |
T7031 |
T7029 |
dobj |
tracts,containing |
R4732 |
T7032 |
T7033 |
punct |
(,n |
R4733 |
T7033 |
T7031 |
compound |
n,tracts |
R4734 |
T7034 |
T7033 |
nmod |
dT,n |
R4735 |
T7035 |
T7033 |
punct |
),n |
R4736 |
T7036 |
T7031 |
acl |
derived,tracts |
R4737 |
T7037 |
T7036 |
prep |
from,derived |
R4738 |
T7038 |
T7039 |
det |
the,origin |
R4739 |
T7039 |
T7037 |
pobj |
origin,from |
R4740 |
T7040 |
T7039 |
amod |
human,origin |
R4741 |
T7041 |
T7042 |
compound |
lamin,B2 |
R4742 |
T7042 |
T7039 |
compound |
B2,origin |
R4743 |
T7043 |
T7044 |
punct |
(,content |
R4744 |
T7044 |
T7039 |
parataxis |
content,origin |
R4745 |
T7045 |
T7046 |
nummod |
48,% |
R4746 |
T7046 |
T7044 |
compound |
%,content |
R4747 |
T7047 |
T7044 |
compound |
thymine,content |
R4748 |
T7048 |
T7044 |
punct |
),content |
R4749 |
T7049 |
T7026 |
aux |
can,serve |
R4750 |
T7050 |
T7026 |
prep |
as,serve |
R4751 |
T7051 |
T7052 |
det |
an,activator |
R4752 |
T7052 |
T7050 |
pobj |
activator,as |
R4753 |
T7053 |
T7052 |
amod |
efficient,activator |
R4754 |
T7054 |
T7052 |
prep |
for,activator |
R4755 |
T7055 |
T7056 |
det |
the,helicase |
R4756 |
T7056 |
T7054 |
pobj |
helicase,for |
R4757 |
T7057 |
T7056 |
compound |
Mcm,helicase |
R4758 |
T7058 |
T7026 |
prep |
on,serve |
R4759 |
T7059 |
T7060 |
det |
a,bubble |
R4760 |
T7060 |
T7058 |
pobj |
bubble,on |
R4761 |
T7061 |
T7023 |
punct |
", ",shown |
R4762 |
T7062 |
T7023 |
cc |
and,shown |
R4763 |
T7063 |
T7064 |
nsubj |
replacement,abolished |
R4764 |
T7064 |
T7023 |
conj |
abolished,shown |
R4765 |
T7065 |
T7063 |
prep |
of,replacement |
R4766 |
T7066 |
T7065 |
pobj |
thymines,of |
R4767 |
T7067 |
T7063 |
prep |
with,replacement |
R4768 |
T7068 |
T7067 |
pobj |
guanines,with |
R4769 |
T7069 |
T7070 |
det |
the,activation |
R4770 |
T7070 |
T7064 |
dobj |
activation,abolished |
R4771 |
T7071 |
T7070 |
compound |
helicase,activation |
R4772 |
T7072 |
T7073 |
punct |
(,28 |
R4773 |
T7073 |
T7064 |
parataxis |
28,abolished |
R4774 |
T7074 |
T7073 |
nummod |
13,28 |
R4775 |
T7075 |
T7073 |
punct |
",",28 |
R4776 |
T7076 |
T7073 |
punct |
),28 |
R4777 |
T7077 |
T7064 |
punct |
.,abolished |
R4778 |
T7079 |
T7080 |
prep |
In,constructed |
R4779 |
T7081 |
T7079 |
pobj |
order,In |
R4780 |
T7082 |
T7083 |
aux |
to,examine |
R4781 |
T7083 |
T7081 |
acl |
examine,order |
R4782 |
T7084 |
T7085 |
amod |
other,origins |
R4783 |
T7085 |
T7083 |
dobj |
origins,examine |
R4784 |
T7086 |
T7085 |
amod |
natural,origins |
R4785 |
T7087 |
T7085 |
compound |
replication,origins |
R4786 |
T7088 |
T7085 |
prep |
with,origins |
R4787 |
T7089 |
T7090 |
amod |
different,contents |
R4788 |
T7090 |
T7088 |
pobj |
contents,with |
R4789 |
T7091 |
T7090 |
compound |
thymine,contents |
R4790 |
T7092 |
T7083 |
prep |
for,examine |
R4791 |
T7093 |
T7094 |
det |
the,ability |
R4792 |
T7094 |
T7092 |
pobj |
ability,for |
R4793 |
T7095 |
T7096 |
aux |
to,activate |
R4794 |
T7096 |
T7094 |
acl |
activate,ability |
R4795 |
T7097 |
T7098 |
compound |
Mcm,helicase |
R4796 |
T7098 |
T7096 |
dobj |
helicase,activate |
R4797 |
T7099 |
T7096 |
prep |
on,activate |
R4798 |
T7100 |
T7101 |
det |
a,substrate |
R4799 |
T7101 |
T7099 |
pobj |
substrate,on |
R4800 |
T7102 |
T7101 |
compound |
bubble,substrate |
R4801 |
T7103 |
T7080 |
punct |
", ",constructed |
R4802 |
T7104 |
T7080 |
nsubj |
we,constructed |
R4803 |
T7105 |
T7106 |
amod |
new,substrates |
R4804 |
T7106 |
T7080 |
dobj |
substrates,constructed |
R4805 |
T7107 |
T7106 |
compound |
bubble,substrates |
R4806 |
T7108 |
T7106 |
punct |
", ",substrates |
R4807 |
T7109 |
T7110 |
compound |
Bub82,myc |
R4808 |
T7110 |
T7106 |
appos |
myc,substrates |
R4809 |
T7111 |
T7110 |
punct |
/,myc |
R4810 |
T7112 |
T7110 |
compound |
c,myc |
R4811 |
T7113 |
T7110 |
punct |
-,myc |
R4812 |
T7114 |
T7106 |
punct |
", ",substrates |
R4813 |
T7115 |
T7106 |
acl |
containing,substrates |
R4814 |
T7116 |
T7115 |
dobj |
sequences,containing |
R4815 |
T7117 |
T7116 |
acl |
derived,sequences |
R4816 |
T7118 |
T7117 |
prep |
from,derived |
R4817 |
T7119 |
T7120 |
det |
the,region |
R4818 |
T7120 |
T7118 |
pobj |
region,from |
R4819 |
T7121 |
T7120 |
nmod |
DUE,region |
R4820 |
T7122 |
T7121 |
punct |
(,DUE |
R4821 |
T7123 |
T7124 |
compound |
DNA,element |
R4822 |
T7124 |
T7121 |
appos |
element,DUE |
R4823 |
T7125 |
T7124 |
compound |
unwinding,element |
R4824 |
T7126 |
T7120 |
punct |
),region |
R4825 |
T7127 |
T7120 |
prep |
of,region |
R4826 |
T7128 |
T7129 |
det |
the,origin |
R4827 |
T7129 |
T7127 |
pobj |
origin,of |
R4828 |
T7130 |
T7129 |
amod |
human,origin |
R4829 |
T7131 |
T7132 |
compound |
c,myc |
R4830 |
T7132 |
T7129 |
compound |
myc,origin |
R4831 |
T7133 |
T7132 |
punct |
-,myc |
R4832 |
T7134 |
T7135 |
dep |
which,is |
R4833 |
T7135 |
T7120 |
relcl |
is,region |
R4834 |
T7136 |
T7135 |
acomp |
essential,is |
R4835 |
T7137 |
T7136 |
prep |
for,essential |
R4836 |
T7138 |
T7139 |
compound |
c,myc |
R4837 |
T7139 |
T7141 |
compound |
myc,activity |
R4838 |
T7140 |
T7139 |
punct |
-,myc |
R4839 |
T7141 |
T7137 |
pobj |
activity,for |
R4840 |
T7142 |
T7141 |
compound |
replicator,activity |
R4841 |
T7143 |
T7144 |
punct |
(,30 |
R4842 |
T7144 |
T7135 |
parataxis |
30,is |
R4843 |
T7145 |
T7144 |
nummod |
29,30 |
R4844 |
T7146 |
T7144 |
punct |
",",30 |
R4845 |
T7147 |
T7144 |
punct |
),30 |
R4846 |
T7148 |
T7080 |
punct |
.,constructed |
R4847 |
T7150 |
T7151 |
det |
The,segment |
R4848 |
T7151 |
T7153 |
nsubj |
segment,contains |
R4849 |
T7152 |
T7151 |
amod |
unpaired,segment |
R4850 |
T7154 |
T7151 |
prep |
in,segment |
R4851 |
T7155 |
T7156 |
compound |
Bub82,DUE |
R4852 |
T7156 |
T7154 |
pobj |
DUE,in |
R4853 |
T7157 |
T7156 |
punct |
/,DUE |
R4854 |
T7158 |
T7159 |
compound |
c,myc |
R4855 |
T7159 |
T7156 |
compound |
myc,DUE |
R4856 |
T7160 |
T7159 |
punct |
-,myc |
R4857 |
T7161 |
T7156 |
punct |
/,DUE |
R4858 |
T7162 |
T7163 |
nummod |
one,strand |
R4859 |
T7163 |
T7153 |
dobj |
strand,contains |
R4860 |
T7164 |
T7163 |
prep |
of,strand |
R4861 |
T7165 |
T7164 |
pobj |
DUE,of |
R4862 |
T7166 |
T7153 |
cc |
and,contains |
R4863 |
T7167 |
T7168 |
nsubj |
that,contains |
R4864 |
T7168 |
T7153 |
conj |
contains,contains |
R4865 |
T7169 |
T7167 |
prep |
in,that |
R4866 |
T7170 |
T7171 |
compound |
Bub82,C |
R4867 |
T7171 |
T7169 |
pobj |
C,in |
R4868 |
T7172 |
T7171 |
punct |
/,C |
R4869 |
T7173 |
T7174 |
compound |
c,myc |
R4870 |
T7174 |
T7171 |
compound |
myc,C |
R4871 |
T7175 |
T7174 |
punct |
-,myc |
R4872 |
T7176 |
T7171 |
punct |
/,C |
R4873 |
T7177 |
T7171 |
compound |
DUE,C |
R4874 |
T7178 |
T7171 |
punct |
-,C |
R4875 |
T7179 |
T7180 |
det |
another,strand |
R4876 |
T7180 |
T7168 |
dobj |
strand,contains |
R4877 |
T7181 |
T7168 |
punct |
.,contains |
R4878 |
T7183 |
T7184 |
det |
This,DUE |
R4879 |
T7184 |
T7185 |
nsubjpass |
DUE,believed |
R4880 |
T7186 |
T7185 |
auxpass |
is,believed |
R4881 |
T7187 |
T7188 |
aux |
to,coincide |
R4882 |
T7188 |
T7185 |
xcomp |
coincide,believed |
R4883 |
T7189 |
T7188 |
prep |
with,coincide |
R4884 |
T7190 |
T7191 |
det |
the,region |
R4885 |
T7191 |
T7189 |
pobj |
region,with |
R4886 |
T7192 |
T7193 |
advmod |
initially,unwound |
R4887 |
T7193 |
T7191 |
amod |
unwound,region |
R4888 |
T7194 |
T7191 |
prep |
of,region |
R4889 |
T7195 |
T7196 |
det |
the,origin |
R4890 |
T7196 |
T7194 |
pobj |
origin,of |
R4891 |
T7197 |
T7198 |
compound |
c,myc |
R4892 |
T7198 |
T7196 |
compound |
myc,origin |
R4893 |
T7199 |
T7198 |
punct |
-,myc |
R4894 |
T7200 |
T7201 |
punct |
(,29 |
R4895 |
T7201 |
T7188 |
parataxis |
29,coincide |
R4896 |
T7202 |
T7201 |
punct |
),29 |
R4897 |
T7203 |
T7185 |
punct |
", ",believed |
R4898 |
T7204 |
T7185 |
cc |
and,believed |
R4899 |
T7205 |
T7206 |
poss |
its,deletion |
R4900 |
T7206 |
T7207 |
nsubj |
deletion,reduced |
R4901 |
T7207 |
T7185 |
conj |
reduced,believed |
R4902 |
T7208 |
T7207 |
advmod |
substantially,reduced |
R4903 |
T7209 |
T7210 |
det |
the,activity |
R4904 |
T7210 |
T7207 |
dobj |
activity,reduced |
R4905 |
T7211 |
T7210 |
compound |
replicator,activity |
R4906 |
T7212 |
T7213 |
punct |
(,30 |
R4907 |
T7213 |
T7207 |
parataxis |
30,reduced |
R4908 |
T7214 |
T7213 |
punct |
),30 |
R4909 |
T7215 |
T7207 |
punct |
.,reduced |
R4910 |
T7217 |
T7218 |
nsubj |
Mcm4,unwound |
R4911 |
T7219 |
T7217 |
punct |
/,Mcm4 |
R4912 |
T7220 |
T7217 |
nummod |
6,Mcm4 |
R4913 |
T7221 |
T7217 |
punct |
/,Mcm4 |
R4914 |
T7222 |
T7217 |
nummod |
7,Mcm4 |
R4915 |
T7223 |
T7224 |
compound |
Bub82,B2 |
R4916 |
T7224 |
T7218 |
dobj |
B2,unwound |
R4917 |
T7225 |
T7224 |
punct |
/,B2 |
R4918 |
T7226 |
T7224 |
compound |
lamin,B2 |
R4919 |
T7227 |
T7228 |
punct |
(,% |
R4920 |
T7228 |
T7224 |
parataxis |
%,B2 |
R4921 |
T7229 |
T7228 |
nmod |
thymine,% |
R4922 |
T7230 |
T7228 |
nummod |
48,% |
R4923 |
T7231 |
T7228 |
punct |
),% |
R4924 |
T7232 |
T7224 |
punct |
", ",B2 |
R4925 |
T7233 |
T7234 |
compound |
Bub82,DUE |
R4926 |
T7234 |
T7224 |
conj |
DUE,B2 |
R4927 |
T7235 |
T7234 |
punct |
/,DUE |
R4928 |
T7236 |
T7237 |
compound |
c,myc |
R4929 |
T7237 |
T7234 |
compound |
myc,DUE |
R4930 |
T7238 |
T7237 |
punct |
-,myc |
R4931 |
T7239 |
T7234 |
punct |
/,DUE |
R4932 |
T7240 |
T7241 |
punct |
(,% |
R4933 |
T7241 |
T7234 |
parataxis |
%,DUE |
R4934 |
T7242 |
T7241 |
nummod |
37,% |
R4935 |
T7243 |
T7241 |
punct |
),% |
R4936 |
T7244 |
T7234 |
cc |
and,DUE |
R4937 |
T7245 |
T7246 |
compound |
Bub82,C |
R4938 |
T7246 |
T7234 |
conj |
C,DUE |
R4939 |
T7247 |
T7246 |
punct |
/,C |
R4940 |
T7248 |
T7249 |
compound |
c,myc |
R4941 |
T7249 |
T7246 |
compound |
myc,C |
R4942 |
T7250 |
T7249 |
punct |
-,myc |
R4943 |
T7251 |
T7246 |
punct |
/,C |
R4944 |
T7252 |
T7246 |
compound |
DUE,C |
R4945 |
T7253 |
T7246 |
punct |
-,C |
R4946 |
T7254 |
T7255 |
punct |
(,% |
R4947 |
T7255 |
T7246 |
parataxis |
%,C |
R4948 |
T7256 |
T7255 |
nummod |
39,% |
R4949 |
T7257 |
T7255 |
punct |
),% |
R4950 |
T7258 |
T7218 |
prep |
with,unwound |
R4951 |
T7259 |
T7260 |
amod |
similar,efficiency |
R4952 |
T7260 |
T7258 |
pobj |
efficiency,with |
R4953 |
T7261 |
T7262 |
punct |
(,7A |
R4954 |
T7262 |
T7260 |
parataxis |
7A,efficiency |
R4955 |
T7263 |
T7262 |
compound |
Figure,7A |
R4956 |
T7264 |
T7262 |
punct |
),7A |
R4957 |
T7265 |
T7218 |
punct |
", ",unwound |
R4958 |
T7266 |
T7218 |
advcl |
indicating,unwound |
R4959 |
T7267 |
T7268 |
mark |
that,serve |
R4960 |
T7268 |
T7266 |
ccomp |
serve,indicating |
R4961 |
T7269 |
T7270 |
det |
the,sequences |
R4962 |
T7270 |
T7268 |
nsubj |
sequences,serve |
R4963 |
T7271 |
T7270 |
prep |
from,sequences |
R4964 |
T7272 |
T7273 |
det |
the,origin |
R4965 |
T7273 |
T7271 |
pobj |
origin,from |
R4966 |
T7274 |
T7275 |
compound |
c,myc |
R4967 |
T7275 |
T7273 |
compound |
myc,origin |
R4968 |
T7276 |
T7275 |
punct |
-,myc |
R4969 |
T7277 |
T7268 |
advmod |
also,serve |
R4970 |
T7278 |
T7268 |
aux |
can,serve |
R4971 |
T7279 |
T7268 |
prep |
as,serve |
R4972 |
T7280 |
T7281 |
amod |
efficient,activators |
R4973 |
T7281 |
T7279 |
pobj |
activators,as |
R4974 |
T7282 |
T7281 |
prep |
of,activators |
R4975 |
T7283 |
T7284 |
det |
the,helicase |
R4976 |
T7284 |
T7282 |
pobj |
helicase,of |
R4977 |
T7285 |
T7284 |
compound |
Mcm,helicase |
R4978 |
T7286 |
T7218 |
punct |
.,unwound |
R4979 |
T7288 |
T7289 |
det |
This,result |
R4980 |
T7289 |
T7290 |
nsubj |
result,indicates |
R4981 |
T7291 |
T7290 |
advmod |
also,indicates |
R4982 |
T7292 |
T7293 |
mark |
that,activate |
R4983 |
T7293 |
T7290 |
ccomp |
activate,indicates |
R4984 |
T7294 |
T7293 |
nsubj |
sequences,activate |
R4985 |
T7295 |
T7294 |
prep |
with,sequences |
R4986 |
T7296 |
T7297 |
nummod |
37,% |
R4987 |
T7297 |
T7298 |
compound |
%,content |
R4988 |
T7298 |
T7295 |
pobj |
content,with |
R4989 |
T7299 |
T7298 |
compound |
thymine,content |
R4990 |
T7300 |
T7293 |
aux |
can,activate |
R4991 |
T7301 |
T7293 |
dobj |
Mcm4,activate |
R4992 |
T7302 |
T7301 |
punct |
/,Mcm4 |
R4993 |
T7303 |
T7301 |
nummod |
6,Mcm4 |
R4994 |
T7304 |
T7301 |
punct |
/,Mcm4 |
R4995 |
T7305 |
T7301 |
nummod |
7,Mcm4 |
R4996 |
T7306 |
T7307 |
aux |
to,displace |
R4997 |
T7307 |
T7293 |
advcl |
displace,activate |
R4998 |
T7308 |
T7309 |
nummod |
24,nt |
R4999 |
T7309 |
T7310 |
compound |
nt,duplex |
R5000 |
T7310 |
T7307 |
dobj |
duplex,displace |
R5001 |
T7311 |
T7307 |
prep |
on,displace |
R5002 |
T7312 |
T7313 |
det |
both,sides |
R5003 |
T7313 |
T7311 |
pobj |
sides,on |
R5004 |
T7314 |
T7307 |
prep |
in,displace |
R5005 |
T7315 |
T7316 |
det |
a,substrate |
R5006 |
T7316 |
T7314 |
pobj |
substrate,in |
R5007 |
T7317 |
T7316 |
compound |
bubble,substrate |
R5008 |
T7318 |
T7293 |
punct |
", ",activate |
R5009 |
T7319 |
T7293 |
advcl |
suggesting,activate |
R5010 |
T7320 |
T7321 |
mark |
that,affect |
R5011 |
T7321 |
T7319 |
ccomp |
affect,suggesting |
R5012 |
T7322 |
T7323 |
det |
the,content |
R5013 |
T7323 |
T7321 |
nsubj |
content,affect |
R5014 |
T7324 |
T7323 |
preconj |
not,content |
R5015 |
T7325 |
T7324 |
advmod |
only,not |
R5016 |
T7326 |
T7323 |
compound |
thymine,content |
R5017 |
T7327 |
T7323 |
cc |
but,content |
R5018 |
T7328 |
T7327 |
advmod |
also,but |
R5019 |
T7329 |
T7330 |
det |
the,context |
R5020 |
T7330 |
T7323 |
conj |
context,content |
R5021 |
T7331 |
T7330 |
compound |
sequence,context |
R5022 |
T7332 |
T7321 |
aux |
may,affect |
R5023 |
T7333 |
T7334 |
det |
the,activation |
R5024 |
T7334 |
T7321 |
dobj |
activation,affect |
R5025 |
T7335 |
T7336 |
compound |
Mcm,helicase |
R5026 |
T7336 |
T7334 |
compound |
helicase,activation |
R5027 |
T7337 |
T7290 |
punct |
.,indicates |
R5028 |
T7339 |
T7340 |
prep |
In,bound |
R5029 |
T7341 |
T7342 |
compound |
gel,shift |
R5030 |
T7342 |
T7343 |
compound |
shift,assays |
R5031 |
T7343 |
T7339 |
pobj |
assays,In |
R5032 |
T7344 |
T7340 |
punct |
", ",bound |
R5033 |
T7345 |
T7340 |
nsubj |
MCM4,bound |
R5034 |
T7346 |
T7345 |
punct |
/,MCM4 |
R5035 |
T7347 |
T7345 |
nummod |
6,MCM4 |
R5036 |
T7348 |
T7345 |
punct |
/,MCM4 |
R5037 |
T7349 |
T7345 |
nummod |
7,MCM4 |
R5038 |
T7350 |
T7340 |
prep |
to,bound |
R5039 |
T7351 |
T7352 |
predet |
all,bubbles |
R5040 |
T7352 |
T7350 |
pobj |
bubbles,to |
R5041 |
T7353 |
T7352 |
det |
the,bubbles |
R5042 |
T7354 |
T7352 |
nummod |
three,bubbles |
R5043 |
T7355 |
T7340 |
punct |
", ",bound |
R5044 |
T7356 |
T7357 |
mark |
although,is |
R5045 |
T7357 |
T7340 |
advcl |
is,bound |
R5046 |
T7358 |
T7359 |
det |
the,affinity |
R5047 |
T7359 |
T7357 |
nsubj |
affinity,is |
R5048 |
T7360 |
T7359 |
prep |
to,affinity |
R5049 |
T7361 |
T7362 |
compound |
Bub82,DUE |
R5050 |
T7362 |
T7360 |
pobj |
DUE,to |
R5051 |
T7363 |
T7362 |
punct |
/,DUE |
R5052 |
T7364 |
T7365 |
compound |
c,myc |
R5053 |
T7365 |
T7362 |
compound |
myc,DUE |
R5054 |
T7366 |
T7365 |
punct |
-,myc |
R5055 |
T7367 |
T7362 |
punct |
/,DUE |
R5056 |
T7368 |
T7360 |
cc |
and,to |
R5057 |
T7369 |
T7360 |
conj |
to,to |
R5058 |
T7370 |
T7371 |
compound |
Bub82,C |
R5059 |
T7371 |
T7369 |
pobj |
C,to |
R5060 |
T7372 |
T7371 |
punct |
/,C |
R5061 |
T7373 |
T7374 |
compound |
c,myc |
R5062 |
T7374 |
T7371 |
compound |
myc,C |
R5063 |
T7375 |
T7374 |
punct |
-,myc |
R5064 |
T7376 |
T7371 |
punct |
/,C |
R5065 |
T7377 |
T7371 |
compound |
DUE,C |
R5066 |
T7378 |
T7371 |
punct |
-,C |
R5067 |
T7379 |
T7380 |
advmod |
slightly,lower |
R5068 |
T7380 |
T7357 |
acomp |
lower,is |
R5069 |
T7381 |
T7380 |
prep |
than,lower |
R5070 |
T7382 |
T7381 |
pobj |
that,than |
R5071 |
T7383 |
T7382 |
prep |
to,that |
R5072 |
T7384 |
T7385 |
nmod |
Bub,B2 |
R5073 |
T7385 |
T7383 |
pobj |
B2,to |
R5074 |
T7386 |
T7385 |
punct |
-,B2 |
R5075 |
T7387 |
T7385 |
nummod |
82,B2 |
R5076 |
T7388 |
T7385 |
punct |
/,B2 |
R5077 |
T7389 |
T7385 |
compound |
lamin,B2 |
R5078 |
T7390 |
T7391 |
punct |
(,7B |
R5079 |
T7391 |
T7357 |
parataxis |
7B,is |
R5080 |
T7392 |
T7391 |
compound |
Figure,7B |
R5081 |
T7393 |
T7391 |
punct |
),7B |
R5082 |
T7394 |
T7340 |
punct |
.,bound |
R5083 |
T7396 |
T7397 |
advmod |
Therefore,correlate |
R5084 |
T7398 |
T7397 |
punct |
", ",correlate |
R5085 |
T7399 |
T7400 |
nmod |
helicase,activities |
R5086 |
T7400 |
T7397 |
nsubj |
activities,correlate |
R5087 |
T7401 |
T7399 |
cc |
and,helicase |
R5088 |
T7402 |
T7403 |
compound |
DNA,binding |
R5089 |
T7403 |
T7399 |
conj |
binding,helicase |
R5090 |
T7404 |
T7397 |
aux |
do,correlate |
R5091 |
T7405 |
T7397 |
neg |
not,correlate |
R5092 |
T7406 |
T7397 |
advmod |
necessarily,correlate |
R5093 |
T7407 |
T7397 |
prep |
with,correlate |
R5094 |
T7408 |
T7409 |
det |
each,other |
R5095 |
T7409 |
T7407 |
pobj |
other,with |
R5096 |
T7410 |
T7397 |
punct |
.,correlate |
R5097 |
T7412 |
T7413 |
nsubjpass |
This,indicated |
R5098 |
T7414 |
T7413 |
auxpass |
was,indicated |
R5099 |
T7415 |
T7413 |
advmod |
also,indicated |
R5100 |
T7416 |
T7413 |
agent |
by,indicated |
R5101 |
T7417 |
T7418 |
poss |
our,results |
R5102 |
T7418 |
T7416 |
pobj |
results,by |
R5103 |
T7419 |
T7418 |
amod |
previous,results |
R5104 |
T7420 |
T7421 |
mark |
that,bind |
R5105 |
T7421 |
T7418 |
acl |
bind,results |
R5106 |
T7422 |
T7423 |
nmod |
guanine,stretches |
R5107 |
T7423 |
T7421 |
nsubj |
stretches,bind |
R5108 |
T7424 |
T7422 |
cc |
and,guanine |
R5109 |
T7425 |
T7422 |
conj |
cytosine,guanine |
R5110 |
T7426 |
T7421 |
aux |
can,bind |
R5111 |
T7427 |
T7421 |
prep |
to,bind |
R5112 |
T7428 |
T7427 |
pobj |
Mcm,to |
R5113 |
T7429 |
T7421 |
cc |
but,bind |
R5114 |
T7430 |
T7431 |
aux |
can,activate |
R5115 |
T7431 |
T7421 |
conj |
activate,bind |
R5116 |
T7432 |
T7431 |
neg |
not,activate |
R5117 |
T7433 |
T7434 |
det |
the,helicase |
R5118 |
T7434 |
T7431 |
dobj |
helicase,activate |
R5119 |
T7435 |
T7436 |
punct |
(,13 |
R5120 |
T7436 |
T7431 |
parataxis |
13,activate |
R5121 |
T7437 |
T7436 |
punct |
),13 |
R5122 |
T7438 |
T7413 |
punct |
.,indicated |
R5124 |
T7722 |
T7723 |
compound |
DNA,unwinding |
R5125 |
T7723 |
T7724 |
nsubjpass |
unwinding,inhibited |
R5126 |
T7725 |
T7723 |
prep |
by,unwinding |
R5127 |
T7726 |
T7725 |
pobj |
Mcm4,by |
R5128 |
T7727 |
T7726 |
punct |
/,Mcm4 |
R5129 |
T7728 |
T7726 |
nummod |
6,Mcm4 |
R5130 |
T7729 |
T7726 |
punct |
/,Mcm4 |
R5131 |
T7730 |
T7726 |
nummod |
7,Mcm4 |
R5132 |
T7731 |
T7724 |
auxpass |
is,inhibited |
R5133 |
T7732 |
T7724 |
agent |
by,inhibited |
R5134 |
T7733 |
T7734 |
det |
the,sequences |
R5135 |
T7734 |
T7732 |
pobj |
sequences,by |
R5136 |
T7735 |
T7736 |
npadvmod |
GC,rich |
R5137 |
T7736 |
T7734 |
amod |
rich,sequences |
R5138 |
T7737 |
T7736 |
punct |
-,rich |
R5139 |
T7738 |
T7734 |
prep |
on,sequences |
R5140 |
T7739 |
T7740 |
det |
the,segment |
R5141 |
T7740 |
T7738 |
pobj |
segment,on |
R5142 |
T7741 |
T7740 |
compound |
duplex,segment |
R5143 |
T7743 |
T7744 |
poss |
Our,results |
R5144 |
T7744 |
T7745 |
nsubj |
results,indicate |
R5145 |
T7746 |
T7747 |
mark |
that,required |
R5146 |
T7747 |
T7745 |
ccomp |
required,indicate |
R5147 |
T7748 |
T7749 |
npadvmod |
thymine,rich |
R5148 |
T7749 |
T7751 |
amod |
rich,DNA |
R5149 |
T7750 |
T7749 |
punct |
-,rich |
R5150 |
T7751 |
T7747 |
nsubjpass |
DNA,required |
R5151 |
T7752 |
T7753 |
amod |
single,stranded |
R5152 |
T7753 |
T7751 |
amod |
stranded,DNA |
R5153 |
T7754 |
T7753 |
punct |
-,stranded |
R5154 |
T7755 |
T7747 |
auxpass |
is,required |
R5155 |
T7756 |
T7747 |
prep |
for,required |
R5156 |
T7757 |
T7758 |
amod |
initial,loading |
R5157 |
T7758 |
T7756 |
pobj |
loading,for |
R5158 |
T7759 |
T7758 |
cc |
and,loading |
R5159 |
T7760 |
T7758 |
conj |
activation,loading |
R5160 |
T7761 |
T7758 |
prep |
of,loading |
R5161 |
T7762 |
T7763 |
det |
the,helicase |
R5162 |
T7763 |
T7761 |
pobj |
helicase,of |
R5163 |
T7764 |
T7763 |
compound |
Mcm,helicase |
R5164 |
T7765 |
T7745 |
punct |
.,indicate |
R5165 |
T7767 |
T7768 |
advmod |
However,known |
R5166 |
T7769 |
T7768 |
punct |
", ",known |
R5167 |
T7770 |
T7768 |
nsubjpass |
it,known |
R5168 |
T7771 |
T7768 |
auxpass |
is,known |
R5169 |
T7772 |
T7768 |
neg |
not,known |
R5170 |
T7773 |
T7774 |
mark |
whether,required |
R5171 |
T7774 |
T7768 |
ccomp |
required,known |
R5172 |
T7775 |
T7776 |
compound |
thymine,sequences |
R5173 |
T7776 |
T7774 |
nsubjpass |
sequences,required |
R5174 |
T7777 |
T7774 |
auxpass |
are,required |
R5175 |
T7778 |
T7774 |
prep |
for,required |
R5176 |
T7779 |
T7780 |
amod |
processive,unwinding |
R5177 |
T7780 |
T7778 |
pobj |
unwinding,for |
R5178 |
T7781 |
T7780 |
prep |
of,unwinding |
R5179 |
T7782 |
T7783 |
compound |
duplex,DNA |
R5180 |
T7783 |
T7781 |
pobj |
DNA,of |
R5181 |
T7784 |
T7768 |
punct |
.,known |
R5182 |
T7786 |
T7787 |
advmod |
Therefore,examined |
R5183 |
T7788 |
T7787 |
punct |
", ",examined |
R5184 |
T7789 |
T7787 |
nsubj |
we,examined |
R5185 |
T7790 |
T7787 |
aux |
have,examined |
R5186 |
T7791 |
T7792 |
mark |
whether,affects |
R5187 |
T7792 |
T7787 |
ccomp |
affects,examined |
R5188 |
T7793 |
T7794 |
det |
the,composition |
R5189 |
T7794 |
T7792 |
nsubj |
composition,affects |
R5190 |
T7795 |
T7794 |
compound |
nucleotide,composition |
R5191 |
T7796 |
T7794 |
prep |
of,composition |
R5192 |
T7797 |
T7798 |
det |
the,region |
R5193 |
T7798 |
T7796 |
pobj |
region,of |
R5194 |
T7799 |
T7798 |
compound |
duplex,region |
R5195 |
T7800 |
T7801 |
poss |
its,activity |
R5196 |
T7801 |
T7792 |
dobj |
activity,affects |
R5197 |
T7802 |
T7801 |
compound |
unwinding,activity |
R5198 |
T7803 |
T7787 |
punct |
.,examined |
R5199 |
T7805 |
T7806 |
aux |
To,address |
R5200 |
T7806 |
T7807 |
advcl |
address,constructed |
R5201 |
T7808 |
T7809 |
det |
this,issue |
R5202 |
T7809 |
T7806 |
dobj |
issue,address |
R5203 |
T7810 |
T7807 |
punct |
", ",constructed |
R5204 |
T7811 |
T7807 |
nsubj |
we,constructed |
R5205 |
T7812 |
T7813 |
det |
a,series |
R5206 |
T7813 |
T7807 |
dobj |
series,constructed |
R5207 |
T7814 |
T7813 |
prep |
of,series |
R5208 |
T7815 |
T7816 |
npadvmod |
T,tailed |
R5209 |
T7816 |
T7818 |
amod |
tailed,structures |
R5210 |
T7817 |
T7816 |
punct |
-,tailed |
R5211 |
T7818 |
T7814 |
pobj |
structures,of |
R5212 |
T7819 |
T7820 |
compound |
Y,fork |
R5213 |
T7820 |
T7818 |
compound |
fork,structures |
R5214 |
T7821 |
T7820 |
punct |
-,fork |
R5215 |
T7822 |
T7818 |
punct |
(,structures |
R5216 |
T7823 |
T7824 |
compound |
T,fork |
R5217 |
T7824 |
T7818 |
appos |
fork,structures |
R5218 |
T7825 |
T7824 |
punct |
-,fork |
R5219 |
T7826 |
T7818 |
punct |
),structures |
R5220 |
T7827 |
T7818 |
acl |
containing,structures |
R5221 |
T7828 |
T7829 |
amod |
various,sequences |
R5222 |
T7829 |
T7827 |
dobj |
sequences,containing |
R5223 |
T7830 |
T7807 |
prep |
in,constructed |
R5224 |
T7831 |
T7832 |
det |
the,segment |
R5225 |
T7832 |
T7830 |
pobj |
segment,in |
R5226 |
T7833 |
T7832 |
compound |
duplex,segment |
R5227 |
T7834 |
T7807 |
punct |
.,constructed |
R5228 |
T7836 |
T7837 |
nsubj |
They,carried |
R5229 |
T7838 |
T7839 |
amod |
varied,contents |
R5230 |
T7839 |
T7837 |
dobj |
contents,carried |
R5231 |
T7840 |
T7839 |
prep |
of,contents |
R5232 |
T7841 |
T7842 |
compound |
cytosine,residues |
R5233 |
T7842 |
T7840 |
pobj |
residues,of |
R5234 |
T7843 |
T7837 |
prep |
on,carried |
R5235 |
T7844 |
T7845 |
det |
the,strand |
R5236 |
T7845 |
T7843 |
pobj |
strand,on |
R5237 |
T7846 |
T7847 |
nummod |
3,tail |
R5238 |
T7847 |
T7845 |
compound |
tail,strand |
R5239 |
T7848 |
T7846 |
punct |
′,3 |
R5240 |
T7849 |
T7847 |
punct |
-,tail |
R5241 |
T7850 |
T7837 |
punct |
.,carried |
R5242 |
T7852 |
T7853 |
prep |
In,bound |
R5243 |
T7854 |
T7855 |
compound |
gel,shift |
R5244 |
T7855 |
T7856 |
compound |
shift,assays |
R5245 |
T7856 |
T7852 |
pobj |
assays,In |
R5246 |
T7857 |
T7853 |
punct |
", ",bound |
R5247 |
T7858 |
T7853 |
nsubj |
Mcm4,bound |
R5248 |
T7859 |
T7858 |
punct |
/,Mcm4 |
R5249 |
T7860 |
T7858 |
nummod |
6,Mcm4 |
R5250 |
T7861 |
T7858 |
punct |
/,Mcm4 |
R5251 |
T7862 |
T7858 |
nummod |
7,Mcm4 |
R5252 |
T7863 |
T7853 |
prep |
to,bound |
R5253 |
T7864 |
T7865 |
det |
these,substrates |
R5254 |
T7865 |
T7863 |
pobj |
substrates,to |
R5255 |
T7866 |
T7867 |
compound |
Y,fork |
R5256 |
T7867 |
T7865 |
compound |
fork,substrates |
R5257 |
T7868 |
T7867 |
punct |
-,fork |
R5258 |
T7869 |
T7853 |
prep |
with,bound |
R5259 |
T7870 |
T7871 |
amod |
identical,affinity |
R5260 |
T7871 |
T7869 |
pobj |
affinity,with |
R5261 |
T7872 |
T7873 |
punct |
(,8A |
R5262 |
T7873 |
T7871 |
parataxis |
8A,affinity |
R5263 |
T7874 |
T7873 |
compound |
Figure,8A |
R5264 |
T7875 |
T7873 |
punct |
),8A |
R5265 |
T7876 |
T7853 |
punct |
", ",bound |
R5266 |
T7877 |
T7853 |
advcl |
consistent,bound |
R5267 |
T7878 |
T7877 |
prep |
with,consistent |
R5268 |
T7879 |
T7880 |
det |
the,notion |
R5269 |
T7880 |
T7878 |
pobj |
notion,with |
R5270 |
T7881 |
T7882 |
mark |
that,binds |
R5271 |
T7882 |
T7880 |
acl |
binds,notion |
R5272 |
T7883 |
T7884 |
det |
the,Mcm4 |
R5273 |
T7884 |
T7882 |
nsubj |
Mcm4,binds |
R5274 |
T7885 |
T7884 |
punct |
/,Mcm4 |
R5275 |
T7886 |
T7884 |
nummod |
6,Mcm4 |
R5276 |
T7887 |
T7884 |
punct |
/,Mcm4 |
R5277 |
T7888 |
T7884 |
nummod |
7,Mcm4 |
R5278 |
T7889 |
T7882 |
prep |
to,binds |
R5279 |
T7890 |
T7891 |
amod |
single,stranded |
R5280 |
T7891 |
T7893 |
amod |
stranded,tails |
R5281 |
T7892 |
T7891 |
punct |
-,stranded |
R5282 |
T7893 |
T7889 |
pobj |
tails,to |
R5283 |
T7894 |
T7853 |
punct |
.,bound |
R5284 |
T7896 |
T7897 |
advmod |
However,displaced |
R5285 |
T7898 |
T7897 |
punct |
", ",displaced |
R5286 |
T7899 |
T7897 |
prep |
in,displaced |
R5287 |
T7900 |
T7901 |
compound |
DNA,helicase |
R5288 |
T7901 |
T7902 |
compound |
helicase,assays |
R5289 |
T7902 |
T7899 |
pobj |
assays,in |
R5290 |
T7903 |
T7897 |
punct |
", ",displaced |
R5291 |
T7904 |
T7905 |
compound |
T,fork |
R5292 |
T7905 |
T7897 |
nsubjpass |
fork,displaced |
R5293 |
T7906 |
T7905 |
punct |
-,fork |
R5294 |
T7907 |
T7905 |
punct |
/,fork |
R5295 |
T7908 |
T7909 |
punct |
(,G |
R5296 |
T7909 |
T7905 |
appos |
G,fork |
R5297 |
T7910 |
T7909 |
nmod |
C,G |
R5298 |
T7911 |
T7909 |
punct |
:,G |
R5299 |
T7912 |
T7909 |
punct |
),G |
R5300 |
T7913 |
T7909 |
nummod |
49,G |
R5301 |
T7914 |
T7897 |
auxpass |
was,displaced |
R5302 |
T7915 |
T7897 |
advmod |
hardly,displaced |
R5303 |
T7916 |
T7897 |
agent |
by,displaced |
R5304 |
T7917 |
T7916 |
pobj |
Mcm4,by |
R5305 |
T7918 |
T7917 |
punct |
/,Mcm4 |
R5306 |
T7919 |
T7917 |
nummod |
6,Mcm4 |
R5307 |
T7920 |
T7917 |
punct |
/,Mcm4 |
R5308 |
T7921 |
T7917 |
nummod |
7,Mcm4 |
R5309 |
T7922 |
T7897 |
punct |
", ",displaced |
R5310 |
T7923 |
T7897 |
cc |
but,displaced |
R5311 |
T7924 |
T7925 |
auxpass |
was,displaced |
R5312 |
T7925 |
T7897 |
conj |
displaced,displaced |
R5313 |
T7926 |
T7925 |
advmod |
readily,displaced |
R5314 |
T7927 |
T7925 |
agent |
by,displaced |
R5315 |
T7928 |
T7929 |
compound |
SV40,helicase |
R5316 |
T7929 |
T7927 |
pobj |
helicase,by |
R5317 |
T7930 |
T7931 |
compound |
T,antigen |
R5318 |
T7931 |
T7929 |
compound |
antigen,helicase |
R5319 |
T7932 |
T7931 |
punct |
-,antigen |
R5320 |
T7933 |
T7929 |
compound |
DNA,helicase |
R5321 |
T7934 |
T7935 |
punct |
(,8B |
R5322 |
T7935 |
T7925 |
parataxis |
8B,displaced |
R5323 |
T7936 |
T7935 |
compound |
Figure,8B |
R5324 |
T7937 |
T7935 |
punct |
),8B |
R5325 |
T7938 |
T7897 |
punct |
.,displaced |
R5326 |
T7940 |
T7941 |
advmod |
When,inserted |
R5327 |
T7941 |
T7946 |
advcl |
inserted,increased |
R5328 |
T7942 |
T7941 |
nsubjpass |
thymine,inserted |
R5329 |
T7943 |
T7942 |
cc |
or,thymine |
R5330 |
T7944 |
T7942 |
conj |
adenine,thymine |
R5331 |
T7945 |
T7941 |
auxpass |
is,inserted |
R5332 |
T7947 |
T7941 |
prep |
as,inserted |
R5333 |
T7948 |
T7949 |
det |
every,nucleotide |
R5334 |
T7949 |
T7947 |
pobj |
nucleotide,as |
R5335 |
T7950 |
T7949 |
amod |
third,nucleotide |
R5336 |
T7951 |
T7952 |
punct |
(,repeats |
R5337 |
T7952 |
T7949 |
parataxis |
repeats,nucleotide |
R5338 |
T7953 |
T7952 |
prep |
of,repeats |
R5339 |
T7954 |
T7953 |
pobj |
CCT,of |
R5340 |
T7955 |
T7954 |
cc |
or,CCT |
R5341 |
T7956 |
T7954 |
conj |
CCA,CCT |
R5342 |
T7957 |
T7952 |
punct |
),repeats |
R5343 |
T7958 |
T7946 |
punct |
", ",increased |
R5344 |
T7959 |
T7960 |
det |
the,extent |
R5345 |
T7960 |
T7946 |
nsubj |
extent,increased |
R5346 |
T7961 |
T7960 |
prep |
of,extent |
R5347 |
T7962 |
T7961 |
pobj |
unwinding,of |
R5348 |
T7963 |
T7964 |
punct |
(,GGA |
R5349 |
T7964 |
T7946 |
dobj |
GGA,increased |
R5350 |
T7965 |
T7966 |
nmod |
T,fork |
R5351 |
T7966 |
T7964 |
nmod |
fork,GGA |
R5352 |
T7967 |
T7966 |
punct |
-,fork |
R5353 |
T7968 |
T7964 |
punct |
/,GGA |
R5354 |
T7969 |
T7964 |
punct |
(,GGA |
R5355 |
T7970 |
T7964 |
nmod |
CCT,GGA |
R5356 |
T7971 |
T7964 |
punct |
:,GGA |
R5357 |
T7972 |
T7964 |
punct |
),GGA |
R5358 |
T7973 |
T7964 |
nummod |
16,GGA |
R5359 |
T7974 |
T7964 |
cc |
and,GGA |
R5360 |
T7975 |
T7976 |
nmod |
T,fork |
R5361 |
T7976 |
T7978 |
nmod |
fork,GGT |
R5362 |
T7977 |
T7976 |
punct |
-,fork |
R5363 |
T7978 |
T7964 |
conj |
GGT,GGA |
R5364 |
T7979 |
T7978 |
punct |
/,GGT |
R5365 |
T7980 |
T7978 |
punct |
(,GGT |
R5366 |
T7981 |
T7978 |
nmod |
CCA,GGT |
R5367 |
T7982 |
T7978 |
punct |
:,GGT |
R5368 |
T7983 |
T7978 |
punct |
),GGT |
R5369 |
T7984 |
T7978 |
nummod |
16,GGT |
R5370 |
T7985 |
T7946 |
punct |
),increased |
R5371 |
T7986 |
T7946 |
punct |
.,increased |
R5372 |
T7988 |
T7989 |
det |
The,efficiency |
R5373 |
T7989 |
T7990 |
nsubjpass |
efficiency,correlated |
R5374 |
T7991 |
T7989 |
prep |
of,efficiency |
R5375 |
T7992 |
T7991 |
pobj |
unwinding,of |
R5376 |
T7993 |
T7990 |
auxpass |
is,correlated |
R5377 |
T7994 |
T7990 |
advmod |
roughly,correlated |
R5378 |
T7995 |
T7990 |
prep |
with,correlated |
R5379 |
T7996 |
T7997 |
det |
the,content |
R5380 |
T7997 |
T7995 |
pobj |
content,with |
R5381 |
T7998 |
T7997 |
prep |
of,content |
R5382 |
T7999 |
T8000 |
compound |
GC,pairs |
R5383 |
T8000 |
T7998 |
pobj |
pairs,of |
R5384 |
T8001 |
T8000 |
prep |
in,pairs |
R5385 |
T8002 |
T8003 |
det |
the,segment |
R5386 |
T8003 |
T8001 |
pobj |
segment,in |
R5387 |
T8004 |
T8003 |
compound |
duplex,segment |
R5388 |
T8005 |
T8006 |
punct |
[,GGTT |
R5389 |
T8006 |
T8000 |
appos |
GGTT,pairs |
R5390 |
T8007 |
T8008 |
nmod |
T,fork |
R5391 |
T8008 |
T8006 |
nmod |
fork,GGTT |
R5392 |
T8009 |
T8008 |
punct |
-,fork |
R5393 |
T8010 |
T8006 |
punct |
/,GGTT |
R5394 |
T8011 |
T8006 |
punct |
(,GGTT |
R5395 |
T8012 |
T8006 |
nmod |
CCAA,GGTT |
R5396 |
T8013 |
T8006 |
punct |
:,GGTT |
R5397 |
T8014 |
T8006 |
punct |
),GGTT |
R5398 |
T8015 |
T8006 |
nummod |
12,GGTT |
R5399 |
T8016 |
T8006 |
punct |
", ",GGTT |
R5400 |
T8017 |
T8018 |
nmod |
T,fork |
R5401 |
T8018 |
T8020 |
nmod |
fork,GGAA |
R5402 |
T8019 |
T8018 |
punct |
-,fork |
R5403 |
T8020 |
T8006 |
conj |
GGAA,GGTT |
R5404 |
T8021 |
T8020 |
punct |
/,GGAA |
R5405 |
T8022 |
T8020 |
punct |
(,GGAA |
R5406 |
T8023 |
T8020 |
nmod |
CCTT,GGAA |
R5407 |
T8024 |
T8020 |
punct |
:,GGAA |
R5408 |
T8025 |
T8020 |
punct |
),GGAA |
R5409 |
T8026 |
T8020 |
nummod |
12,GGAA |
R5410 |
T8027 |
T8020 |
punct |
", ",GGAA |
R5411 |
T8028 |
T8029 |
nmod |
T,fork |
R5412 |
T8029 |
T8031 |
nmod |
fork,GTTT |
R5413 |
T8030 |
T8029 |
punct |
-,fork |
R5414 |
T8031 |
T8020 |
conj |
GTTT,GGAA |
R5415 |
T8032 |
T8031 |
punct |
/,GTTT |
R5416 |
T8033 |
T8031 |
punct |
(,GTTT |
R5417 |
T8034 |
T8031 |
nmod |
CAAA,GTTT |
R5418 |
T8035 |
T8031 |
punct |
:,GTTT |
R5419 |
T8036 |
T8031 |
punct |
),GTTT |
R5420 |
T8037 |
T8031 |
nummod |
12,GTTT |
R5421 |
T8038 |
T8031 |
cc |
and,GTTT |
R5422 |
T8039 |
T8040 |
nmod |
T,fork |
R5423 |
T8040 |
T8042 |
nmod |
fork,GAAA |
R5424 |
T8041 |
T8040 |
punct |
-,fork |
R5425 |
T8042 |
T8031 |
conj |
GAAA,GTTT |
R5426 |
T8043 |
T8042 |
punct |
/,GAAA |
R5427 |
T8044 |
T8042 |
punct |
(,GAAA |
R5428 |
T8045 |
T8042 |
nmod |
CTTT,GAAA |
R5429 |
T8046 |
T8042 |
punct |
:,GAAA |
R5430 |
T8047 |
T8042 |
punct |
),GAAA |
R5431 |
T8048 |
T8042 |
nummod |
12,GAAA |
R5432 |
T8049 |
T8050 |
punct |
;,8B |
R5433 |
T8050 |
T7990 |
parataxis |
8B,correlated |
R5434 |
T8051 |
T8050 |
compound |
Figure,8B |
R5435 |
T8052 |
T8050 |
punct |
],8B |
R5436 |
T8053 |
T7990 |
punct |
.,correlated |
R5437 |
T8055 |
T8056 |
nsubj |
It,appears |
R5438 |
T8057 |
T8058 |
mark |
that,unwound |
R5439 |
T8058 |
T8056 |
ccomp |
unwound,appears |
R5440 |
T8059 |
T8060 |
det |
the,segment |
R5441 |
T8060 |
T8058 |
nsubjpass |
segment,unwound |
R5442 |
T8061 |
T8060 |
compound |
duplex,segment |
R5443 |
T8062 |
T8060 |
acl |
containing,segment |
R5444 |
T8063 |
T8064 |
punct |
<,50 |
R5445 |
T8064 |
T8065 |
nummod |
50,% |
R5446 |
T8065 |
T8066 |
compound |
%,pairs |
R5447 |
T8066 |
T8062 |
dobj |
pairs,containing |
R5448 |
T8067 |
T8066 |
compound |
GC,pairs |
R5449 |
T8068 |
T8058 |
auxpass |
is,unwound |
R5450 |
T8069 |
T8058 |
advmod |
efficiently,unwound |
R5451 |
T8070 |
T8071 |
punct |
(,8C |
R5452 |
T8071 |
T8058 |
parataxis |
8C,unwound |
R5453 |
T8072 |
T8071 |
compound |
Figure,8C |
R5454 |
T8073 |
T8071 |
punct |
),8C |
R5455 |
T8074 |
T8056 |
punct |
.,appears |
R5456 |
T8076 |
T8077 |
nsubj |
We,examined |
R5457 |
T8078 |
T8077 |
advmod |
next,examined |
R5458 |
T8079 |
T8080 |
det |
the,effect |
R5459 |
T8080 |
T8077 |
dobj |
effect,examined |
R5460 |
T8081 |
T8080 |
prep |
of,effect |
R5461 |
T8082 |
T8083 |
npadvmod |
GC,rich |
R5462 |
T8083 |
T8085 |
amod |
rich,segments |
R5463 |
T8084 |
T8083 |
punct |
-,rich |
R5464 |
T8085 |
T8081 |
pobj |
segments,of |
R5465 |
T8086 |
T8080 |
prep |
on,effect |
R5466 |
T8087 |
T8088 |
det |
a,DNA |
R5467 |
T8088 |
T8086 |
pobj |
DNA,on |
R5468 |
T8089 |
T8088 |
amod |
partial,DNA |
R5469 |
T8090 |
T8088 |
compound |
heteroduplex,DNA |
R5470 |
T8091 |
T8088 |
prep |
on,DNA |
R5471 |
T8092 |
T8093 |
det |
a,DNA |
R5472 |
T8093 |
T8091 |
pobj |
DNA,on |
R5473 |
T8094 |
T8095 |
amod |
single,stranded |
R5474 |
T8095 |
T8093 |
amod |
stranded,DNA |
R5475 |
T8096 |
T8095 |
punct |
-,stranded |
R5476 |
T8097 |
T8093 |
amod |
circular,DNA |
R5477 |
T8098 |
T8077 |
punct |
.,examined |
R5478 |
T8100 |
T8101 |
nsubj |
We,constructed |
R5479 |
T8102 |
T8101 |
aux |
have,constructed |
R5480 |
T8103 |
T8104 |
nummod |
two,sets |
R5481 |
T8104 |
T8101 |
dobj |
sets,constructed |
R5482 |
T8105 |
T8104 |
prep |
of,sets |
R5483 |
T8106 |
T8107 |
npadvmod |
5,tailed |
R5484 |
T8107 |
T8110 |
amod |
tailed,substrates |
R5485 |
T8108 |
T8106 |
punct |
′,5 |
R5486 |
T8109 |
T8107 |
punct |
-,tailed |
R5487 |
T8110 |
T8105 |
pobj |
substrates,of |
R5488 |
T8111 |
T8112 |
amod |
partial,heteroduplex |
R5489 |
T8112 |
T8110 |
compound |
heteroduplex,substrates |
R5490 |
T8113 |
T8110 |
compound |
DNA,substrates |
R5491 |
T8114 |
T8110 |
acl |
containing,substrates |
R5492 |
T8115 |
T8116 |
compound |
duplex,regions |
R5493 |
T8116 |
T8114 |
dobj |
regions,containing |
R5494 |
T8117 |
T8116 |
prep |
of,regions |
R5495 |
T8118 |
T8119 |
amod |
variable,lengths |
R5496 |
T8119 |
T8117 |
pobj |
lengths,of |
R5497 |
T8120 |
T8104 |
punct |
;,sets |
R5498 |
T8121 |
T8104 |
appos |
one,sets |
R5499 |
T8122 |
T8121 |
prep |
on,one |
R5500 |
T8123 |
T8124 |
compound |
M13mp18,vector |
R5501 |
T8124 |
T8122 |
pobj |
vector,on |
R5502 |
T8125 |
T8121 |
cc |
and,one |
R5503 |
T8126 |
T8127 |
det |
the,other |
R5504 |
T8127 |
T8121 |
conj |
other,one |
R5505 |
T8128 |
T8127 |
prep |
on,other |
R5506 |
T8129 |
T8128 |
pobj |
M13mp19,on |
R5507 |
T8130 |
T8121 |
acl |
containing,one |
R5508 |
T8131 |
T8132 |
det |
a,segment |
R5509 |
T8132 |
T8130 |
dobj |
segment,containing |
R5510 |
T8133 |
T8134 |
nummod |
66,nt |
R5511 |
T8134 |
T8135 |
npadvmod |
nt,long |
R5512 |
T8135 |
T8132 |
amod |
long,segment |
R5513 |
T8136 |
T8137 |
npadvmod |
G,rich |
R5514 |
T8137 |
T8132 |
amod |
rich,segment |
R5515 |
T8138 |
T8137 |
punct |
-,rich |
R5516 |
T8139 |
T8132 |
advmod |
downstream,segment |
R5517 |
T8140 |
T8139 |
prep |
of,downstream |
R5518 |
T8141 |
T8142 |
det |
the,oligonucleotide |
R5519 |
T8142 |
T8140 |
pobj |
oligonucleotide,of |
R5520 |
T8143 |
T8142 |
amod |
hybridizing,oligonucleotide |
R5521 |
T8144 |
T8101 |
punct |
.,constructed |
R5522 |
T8146 |
T8147 |
nsubj |
We,found |
R5523 |
T8148 |
T8149 |
mark |
that,displace |
R5524 |
T8149 |
T8147 |
ccomp |
displace,found |
R5525 |
T8150 |
T8151 |
det |
the,helicase |
R5526 |
T8151 |
T8149 |
nsubj |
helicase,displace |
R5527 |
T8152 |
T8151 |
nmod |
Mcm4,helicase |
R5528 |
T8153 |
T8152 |
punct |
/,Mcm4 |
R5529 |
T8154 |
T8152 |
nummod |
6,Mcm4 |
R5530 |
T8155 |
T8152 |
punct |
/,Mcm4 |
R5531 |
T8156 |
T8152 |
nummod |
7,Mcm4 |
R5532 |
T8157 |
T8149 |
aux |
can,displace |
R5533 |
T8158 |
T8159 |
compound |
duplex,DNA |
R5534 |
T8159 |
T8149 |
dobj |
DNA,displace |
R5535 |
T8160 |
T8161 |
quantmod |
up,350 |
R5536 |
T8161 |
T8163 |
nummod |
350,nt |
R5537 |
T8162 |
T8161 |
quantmod |
to,350 |
R5538 |
T8163 |
T8164 |
npadvmod |
nt,long |
R5539 |
T8164 |
T8159 |
amod |
long,DNA |
R5540 |
T8165 |
T8149 |
prep |
on,displace |
R5541 |
T8166 |
T8167 |
poss |
its,own |
R5542 |
T8167 |
T8165 |
pobj |
own,on |
R5543 |
T8168 |
T8149 |
prep |
on,displace |
R5544 |
T8169 |
T8170 |
det |
the,substrate |
R5545 |
T8170 |
T8168 |
pobj |
substrate,on |
R5546 |
T8171 |
T8170 |
amod |
former,substrate |
R5547 |
T8172 |
T8173 |
punct |
(,8D |
R5548 |
T8173 |
T8149 |
parataxis |
8D,displace |
R5549 |
T8174 |
T8173 |
compound |
Figure,8D |
R5550 |
T8175 |
T8173 |
punct |
", ",8D |
R5551 |
T8176 |
T8173 |
amod |
left,8D |
R5552 |
T8177 |
T8173 |
punct |
),8D |
R5553 |
T8178 |
T8147 |
punct |
", ",found |
R5554 |
T8179 |
T8147 |
advcl |
consistent,found |
R5555 |
T8180 |
T8179 |
prep |
with,consistent |
R5556 |
T8181 |
T8182 |
amod |
previous,results |
R5557 |
T8182 |
T8180 |
pobj |
results,with |
R5558 |
T8183 |
T8184 |
punct |
(,13 |
R5559 |
T8184 |
T8182 |
parataxis |
13,results |
R5560 |
T8185 |
T8184 |
punct |
),13 |
R5561 |
T8186 |
T8147 |
punct |
.,found |
R5562 |
T8188 |
T8189 |
prep |
In,inhibited |
R5563 |
T8190 |
T8188 |
pobj |
contrast,In |
R5564 |
T8191 |
T8189 |
punct |
", ",inhibited |
R5565 |
T8192 |
T8189 |
nsubjpass |
displacement,inhibited |
R5566 |
T8193 |
T8189 |
auxpass |
was,inhibited |
R5567 |
T8194 |
T8189 |
prep |
over,inhibited |
R5568 |
T8195 |
T8196 |
det |
the,segments |
R5569 |
T8196 |
T8194 |
pobj |
segments,over |
R5570 |
T8197 |
T8198 |
npadvmod |
GC,rich |
R5571 |
T8198 |
T8196 |
amod |
rich,segments |
R5572 |
T8199 |
T8198 |
punct |
-,rich |
R5573 |
T8200 |
T8196 |
prep |
on,segments |
R5574 |
T8201 |
T8202 |
det |
the,substrate |
R5575 |
T8202 |
T8200 |
pobj |
substrate,on |
R5576 |
T8203 |
T8202 |
amod |
latter,substrate |
R5577 |
T8204 |
T8205 |
punct |
(,panel |
R5578 |
T8205 |
T8196 |
parataxis |
panel,segments |
R5579 |
T8206 |
T8207 |
compound |
Figure,8D |
R5580 |
T8207 |
T8205 |
dep |
8D,panel |
R5581 |
T8208 |
T8205 |
punct |
", ",panel |
R5582 |
T8209 |
T8205 |
amod |
right,panel |
R5583 |
T8210 |
T8205 |
punct |
),panel |
R5584 |
T8211 |
T8189 |
punct |
", ",inhibited |
R5585 |
T8212 |
T8213 |
mark |
although,observed |
R5586 |
T8213 |
T8189 |
advcl |
observed,inhibited |
R5587 |
T8214 |
T8213 |
nsubjpass |
displacement,observed |
R5588 |
T8215 |
T8216 |
quantmod |
up,250 |
R5589 |
T8216 |
T8218 |
nummod |
250,nt |
R5590 |
T8217 |
T8216 |
quantmod |
to,250 |
R5591 |
T8218 |
T8214 |
appos |
nt,displacement |
R5592 |
T8219 |
T8218 |
prep |
in,nt |
R5593 |
T8220 |
T8219 |
pobj |
length,in |
R5594 |
T8221 |
T8218 |
punct |
", ",nt |
R5595 |
T8222 |
T8223 |
dep |
albeit,at |
R5596 |
T8223 |
T8218 |
prep |
at,nt |
R5597 |
T8224 |
T8225 |
det |
a,level |
R5598 |
T8225 |
T8223 |
pobj |
level,at |
R5599 |
T8226 |
T8225 |
amod |
reduced,level |
R5600 |
T8227 |
T8213 |
punct |
", ",observed |
R5601 |
T8228 |
T8213 |
auxpass |
was,observed |
R5602 |
T8229 |
T8213 |
prep |
at,observed |
R5603 |
T8230 |
T8231 |
det |
a,concentration |
R5604 |
T8231 |
T8229 |
pobj |
concentration,at |
R5605 |
T8232 |
T8231 |
amod |
high,concentration |
R5606 |
T8233 |
T8231 |
prep |
of,concentration |
R5607 |
T8234 |
T8235 |
nmod |
Mcm4,complex |
R5608 |
T8235 |
T8233 |
pobj |
complex,of |
R5609 |
T8236 |
T8234 |
punct |
/,Mcm4 |
R5610 |
T8237 |
T8234 |
nummod |
6,Mcm4 |
R5611 |
T8238 |
T8234 |
punct |
/,Mcm4 |
R5612 |
T8239 |
T8234 |
nummod |
7,Mcm4 |
R5613 |
T8240 |
T8189 |
punct |
.,inhibited |
R5614 |
T8242 |
T8243 |
det |
This,result |
R5615 |
T8243 |
T8244 |
nsubj |
result,is |
R5616 |
T8245 |
T8244 |
acomp |
consistent,is |
R5617 |
T8246 |
T8245 |
prep |
with,consistent |
R5618 |
T8247 |
T8246 |
pobj |
that,with |
R5619 |
T8248 |
T8247 |
prep |
on,that |
R5620 |
T8249 |
T8250 |
compound |
Y,fork |
R5621 |
T8250 |
T8248 |
pobj |
fork,on |
R5622 |
T8251 |
T8250 |
punct |
-,fork |
R5623 |
T8252 |
T8244 |
cc |
and,is |
R5624 |
T8253 |
T8244 |
conj |
indicates,is |
R5625 |
T8254 |
T8255 |
mark |
that,is |
R5626 |
T8255 |
T8253 |
ccomp |
is,indicates |
R5627 |
T8256 |
T8257 |
npadvmod |
GC,rich |
R5628 |
T8257 |
T8259 |
amod |
rich,segment |
R5629 |
T8258 |
T8257 |
punct |
-,rich |
R5630 |
T8259 |
T8255 |
nsubj |
segment,is |
R5631 |
T8260 |
T8259 |
compound |
duplex,segment |
R5632 |
T8261 |
T8255 |
acomp |
inhibitory,is |
R5633 |
T8262 |
T8261 |
prep |
for,inhibitory |
R5634 |
T8263 |
T8262 |
pobj |
unwinding,for |
R5635 |
T8264 |
T8263 |
prep |
by,unwinding |
R5636 |
T8265 |
T8266 |
det |
the,helicase |
R5637 |
T8266 |
T8264 |
pobj |
helicase,by |
R5638 |
T8267 |
T8266 |
compound |
Mcm,helicase |
R5639 |
T8268 |
T8244 |
punct |
.,is |
R5640 |
T8270 |
T8271 |
det |
These,results |
R5641 |
T8271 |
T8272 |
nsubj |
results,indicate |
R5642 |
T8273 |
T8272 |
aux |
may,indicate |
R5643 |
T8274 |
T8275 |
mark |
that,facilitate |
R5644 |
T8275 |
T8272 |
ccomp |
facilitate,indicate |
R5645 |
T8276 |
T8277 |
det |
the,presence |
R5646 |
T8277 |
T8275 |
nsubj |
presence,facilitate |
R5647 |
T8278 |
T8277 |
prep |
of,presence |
R5648 |
T8279 |
T8280 |
compound |
thymine,adenine |
R5649 |
T8280 |
T8282 |
compound |
adenine,pairs |
R5650 |
T8281 |
T8280 |
punct |
–,adenine |
R5651 |
T8282 |
T8278 |
pobj |
pairs,of |
R5652 |
T8283 |
T8282 |
prep |
with,pairs |
R5653 |
T8284 |
T8285 |
det |
a,frequency |
R5654 |
T8285 |
T8283 |
pobj |
frequency,with |
R5655 |
T8286 |
T8285 |
amod |
certain,frequency |
R5656 |
T8287 |
T8277 |
prep |
in,presence |
R5657 |
T8288 |
T8289 |
det |
the,region |
R5658 |
T8289 |
T8287 |
pobj |
region,in |
R5659 |
T8290 |
T8289 |
compound |
duplex,region |
R5660 |
T8291 |
T8275 |
aux |
may,facilitate |
R5661 |
T8292 |
T8293 |
amod |
continuous,unwinding |
R5662 |
T8293 |
T8275 |
dobj |
unwinding,facilitate |
R5663 |
T8294 |
T8293 |
prep |
by,unwinding |
R5664 |
T8295 |
T8294 |
pobj |
Mcm4,by |
R5665 |
T8296 |
T8295 |
punct |
/,Mcm4 |
R5666 |
T8297 |
T8295 |
nummod |
6,Mcm4 |
R5667 |
T8298 |
T8295 |
punct |
/,Mcm4 |
R5668 |
T8299 |
T8295 |
nummod |
7,Mcm4 |
R5669 |
T8300 |
T8272 |
punct |
.,indicate |
R5670 |
T8302 |
T8303 |
advmod |
Alternatively,is |
R5671 |
T8304 |
T8303 |
punct |
", ",is |
R5672 |
T8305 |
T8303 |
nsubj |
Mcm4,is |
R5673 |
T8306 |
T8305 |
punct |
/,Mcm4 |
R5674 |
T8307 |
T8305 |
nummod |
6,Mcm4 |
R5675 |
T8308 |
T8305 |
punct |
/,Mcm4 |
R5676 |
T8309 |
T8305 |
nummod |
7,Mcm4 |
R5677 |
T8310 |
T8303 |
neg |
not,is |
R5678 |
T8311 |
T8303 |
acomp |
efficient,is |
R5679 |
T8312 |
T8311 |
advmod |
enough,efficient |
R5680 |
T8313 |
T8314 |
aux |
to,displace |
R5681 |
T8314 |
T8311 |
xcomp |
displace,efficient |
R5682 |
T8315 |
T8316 |
advmod |
thermodynamically,stable |
R5683 |
T8316 |
T8317 |
amod |
stable,segment |
R5684 |
T8317 |
T8314 |
dobj |
segment,displace |
R5685 |
T8318 |
T8319 |
npadvmod |
GC,paired |
R5686 |
T8319 |
T8317 |
amod |
paired,segment |
R5687 |
T8320 |
T8319 |
punct |
-,paired |
R5688 |
T8321 |
T8319 |
npadvmod |
base,paired |
R5689 |
T8322 |
T8319 |
punct |
-,paired |
R5690 |
T8323 |
T8303 |
punct |
.,is |
R5691 |
T8325 |
T8326 |
prep |
In,designed |
R5692 |
T8327 |
T8325 |
pobj |
order,In |
R5693 |
T8328 |
T8329 |
aux |
to,distinguish |
R5694 |
T8329 |
T8327 |
acl |
distinguish,order |
R5695 |
T8330 |
T8331 |
det |
these,possibilities |
R5696 |
T8331 |
T8329 |
dobj |
possibilities,distinguish |
R5697 |
T8332 |
T8331 |
nummod |
two,possibilities |
R5698 |
T8333 |
T8326 |
punct |
", ",designed |
R5699 |
T8334 |
T8326 |
nsubj |
we,designed |
R5700 |
T8335 |
T8336 |
det |
a,substrate |
R5701 |
T8336 |
T8326 |
dobj |
substrate,designed |
R5702 |
T8337 |
T8336 |
amod |
new,substrate |
R5703 |
T8338 |
T8339 |
compound |
T,fork |
R5704 |
T8339 |
T8336 |
compound |
fork,substrate |
R5705 |
T8340 |
T8339 |
punct |
-,fork |
R5706 |
T8341 |
T8336 |
acl |
containing,substrate |
R5707 |
T8342 |
T8343 |
nmod |
inosine,residue |
R5708 |
T8343 |
T8341 |
dobj |
residue,containing |
R5709 |
T8344 |
T8342 |
punct |
(,inosine |
R5710 |
T8345 |
T8342 |
appos |
I,inosine |
R5711 |
T8346 |
T8343 |
punct |
),residue |
R5712 |
T8347 |
T8348 |
advmod |
instead,of |
R5713 |
T8348 |
T8343 |
prep |
of,residue |
R5714 |
T8349 |
T8350 |
compound |
guanosine,residue |
R5715 |
T8350 |
T8348 |
pobj |
residue,of |
R5716 |
T8351 |
T8326 |
punct |
.,designed |
R5717 |
T8353 |
T8354 |
det |
The,stability |
R5718 |
T8354 |
T8356 |
nsubj |
stability,is |
R5719 |
T8355 |
T8354 |
amod |
thermal,stability |
R5720 |
T8357 |
T8354 |
prep |
of,stability |
R5721 |
T8358 |
T8359 |
det |
the,pair |
R5722 |
T8359 |
T8357 |
pobj |
pair,of |
R5723 |
T8360 |
T8361 |
nmod |
I,C |
R5724 |
T8361 |
T8359 |
compound |
C,pair |
R5725 |
T8362 |
T8361 |
punct |
:,C |
R5726 |
T8363 |
T8359 |
compound |
base,pair |
R5727 |
T8364 |
T8356 |
acomp |
lower,is |
R5728 |
T8365 |
T8364 |
prep |
than,lower |
R5729 |
T8366 |
T8365 |
pobj |
that,than |
R5730 |
T8367 |
T8366 |
prep |
of,that |
R5731 |
T8368 |
T8369 |
det |
the,pair |
R5732 |
T8369 |
T8367 |
pobj |
pair,of |
R5733 |
T8370 |
T8371 |
nmod |
G,C |
R5734 |
T8371 |
T8369 |
compound |
C,pair |
R5735 |
T8372 |
T8371 |
punct |
:,C |
R5736 |
T8373 |
T8369 |
compound |
base,pair |
R5737 |
T8374 |
T8356 |
prep |
in,is |
R5738 |
T8375 |
T8376 |
compound |
duplex,DNA |
R5739 |
T8376 |
T8374 |
pobj |
DNA,in |
R5740 |
T8377 |
T8356 |
prep |
due,is |
R5741 |
T8378 |
T8377 |
pcomp |
to,due |
R5742 |
T8379 |
T8377 |
pobj |
loss,due |
R5743 |
T8380 |
T8379 |
prep |
of,loss |
R5744 |
T8381 |
T8382 |
nummod |
one,bond |
R5745 |
T8382 |
T8380 |
pobj |
bond,of |
R5746 |
T8383 |
T8382 |
compound |
hydrogen,bond |
R5747 |
T8384 |
T8356 |
cc |
and,is |
R5748 |
T8385 |
T8356 |
conj |
is,is |
R5749 |
T8386 |
T8387 |
advmod |
even,lower |
R5750 |
T8387 |
T8385 |
acomp |
lower,is |
R5751 |
T8388 |
T8387 |
prep |
than,lower |
R5752 |
T8389 |
T8390 |
nmod |
A,T |
R5753 |
T8390 |
T8392 |
compound |
T,pair |
R5754 |
T8391 |
T8390 |
punct |
:,T |
R5755 |
T8392 |
T8388 |
pobj |
pair,than |
R5756 |
T8393 |
T8392 |
compound |
base,pair |
R5757 |
T8394 |
T8395 |
punct |
(,31 |
R5758 |
T8395 |
T8392 |
parataxis |
31,pair |
R5759 |
T8396 |
T8395 |
punct |
),31 |
R5760 |
T8397 |
T8356 |
punct |
.,is |
R5761 |
T8399 |
T8400 |
nsubj |
We,constructed |
R5762 |
T8401 |
T8402 |
det |
the,substrates |
R5763 |
T8402 |
T8400 |
dobj |
substrates,constructed |
R5764 |
T8403 |
T8404 |
npadvmod |
T,tailed |
R5765 |
T8404 |
T8402 |
amod |
tailed,substrates |
R5766 |
T8405 |
T8404 |
punct |
-,tailed |
R5767 |
T8406 |
T8402 |
compound |
fork,substrates |
R5768 |
T8407 |
T8402 |
acl |
containing,substrates |
R5769 |
T8408 |
T8409 |
det |
the,segment |
R5770 |
T8409 |
T8407 |
dobj |
segment,containing |
R5771 |
T8410 |
T8411 |
punct |
(,CGG |
R5772 |
T8411 |
T8409 |
nmod |
CGG,segment |
R5773 |
T8412 |
T8411 |
nmod |
GCC,CGG |
R5774 |
T8413 |
T8411 |
punct |
:,CGG |
R5775 |
T8414 |
T8411 |
punct |
),CGG |
R5776 |
T8415 |
T8411 |
nummod |
10,CGG |
R5777 |
T8416 |
T8411 |
punct |
", ",CGG |
R5778 |
T8417 |
T8418 |
punct |
(,CIG |
R5779 |
T8418 |
T8411 |
conj |
CIG,CGG |
R5780 |
T8419 |
T8418 |
nmod |
GCC,CIG |
R5781 |
T8420 |
T8418 |
punct |
:,CIG |
R5782 |
T8421 |
T8418 |
punct |
),CIG |
R5783 |
T8422 |
T8418 |
nummod |
10,CIG |
R5784 |
T8423 |
T8418 |
cc |
or,CIG |
R5785 |
T8424 |
T8425 |
punct |
(,CTT |
R5786 |
T8425 |
T8418 |
conj |
CTT,CIG |
R5787 |
T8426 |
T8425 |
nmod |
GAA,CTT |
R5788 |
T8427 |
T8425 |
punct |
:,CTT |
R5789 |
T8428 |
T8425 |
punct |
),CTT |
R5790 |
T8429 |
T8425 |
nummod |
10,CTT |
R5791 |
T8430 |
T8409 |
compound |
duplex,segment |
R5792 |
T8431 |
T8409 |
compound |
DNA,segment |
R5793 |
T8432 |
T8433 |
punct |
(,8E |
R5794 |
T8433 |
T8407 |
parataxis |
8E,containing |
R5795 |
T8434 |
T8433 |
compound |
Figure,8E |
R5796 |
T8435 |
T8433 |
punct |
),8E |
R5797 |
T8436 |
T8400 |
punct |
.,constructed |
R5798 |
T8438 |
T8439 |
nsubj |
Mcm4,displaced |
R5799 |
T8440 |
T8438 |
punct |
/,Mcm4 |
R5800 |
T8441 |
T8438 |
nummod |
6,Mcm4 |
R5801 |
T8442 |
T8438 |
punct |
/,Mcm4 |
R5802 |
T8443 |
T8438 |
nummod |
7,Mcm4 |
R5803 |
T8444 |
T8439 |
advmod |
hardly,displaced |
R5804 |
T8445 |
T8446 |
det |
the,duplex |
R5805 |
T8446 |
T8439 |
dobj |
duplex,displaced |
R5806 |
T8447 |
T8448 |
nummod |
31,nt |
R5807 |
T8448 |
T8449 |
npadvmod |
nt,long |
R5808 |
T8449 |
T8446 |
amod |
long,duplex |
R5809 |
T8450 |
T8446 |
prep |
of,duplex |
R5810 |
T8451 |
T8452 |
nmod |
GCC,CGG |
R5811 |
T8452 |
T8454 |
compound |
CGG,repeats |
R5812 |
T8453 |
T8452 |
punct |
:,CGG |
R5813 |
T8454 |
T8450 |
pobj |
repeats,of |
R5814 |
T8455 |
T8439 |
punct |
", ",displaced |
R5815 |
T8456 |
T8457 |
mark |
whereas,displaced |
R5816 |
T8457 |
T8439 |
advcl |
displaced,displaced |
R5817 |
T8458 |
T8459 |
det |
the,CTT |
R5818 |
T8459 |
T8457 |
nsubjpass |
CTT,displaced |
R5819 |
T8460 |
T8461 |
nmod |
T,fork |
R5820 |
T8461 |
T8459 |
nmod |
fork,CTT |
R5821 |
T8462 |
T8461 |
punct |
-,fork |
R5822 |
T8463 |
T8459 |
punct |
/,CTT |
R5823 |
T8464 |
T8459 |
punct |
(,CTT |
R5824 |
T8465 |
T8459 |
nmod |
GAA,CTT |
R5825 |
T8466 |
T8459 |
punct |
:,CTT |
R5826 |
T8467 |
T8459 |
punct |
),CTT |
R5827 |
T8468 |
T8459 |
nummod |
10,CTT |
R5828 |
T8469 |
T8457 |
auxpass |
was,displaced |
R5829 |
T8470 |
T8457 |
advmod |
efficiently,displaced |
R5830 |
T8471 |
T8457 |
punct |
", ",displaced |
R5831 |
T8472 |
T8473 |
mark |
as,described |
R5832 |
T8473 |
T8457 |
advcl |
described,displaced |
R5833 |
T8474 |
T8473 |
advmod |
above,described |
R5834 |
T8475 |
T8439 |
punct |
.,displaced |
R5835 |
T8477 |
T8478 |
nmod |
T,fork |
R5836 |
T8478 |
T8480 |
nmod |
fork,CIG |
R5837 |
T8479 |
T8478 |
punct |
-,fork |
R5838 |
T8480 |
T8485 |
nsubjpass |
CIG,displaced |
R5839 |
T8481 |
T8480 |
punct |
/,CIG |
R5840 |
T8482 |
T8480 |
punct |
(,CIG |
R5841 |
T8483 |
T8480 |
nmod |
GCC,CIG |
R5842 |
T8484 |
T8480 |
punct |
:,CIG |
R5843 |
T8486 |
T8480 |
punct |
),CIG |
R5844 |
T8487 |
T8480 |
nummod |
10,CIG |
R5845 |
T8488 |
T8485 |
auxpass |
was,displaced |
R5846 |
T8489 |
T8485 |
prep |
with,displaced |
R5847 |
T8490 |
T8489 |
pobj |
efficiency,with |
R5848 |
T8491 |
T8492 |
advmod |
much,greater |
R5849 |
T8492 |
T8490 |
amod |
greater,efficiency |
R5850 |
T8493 |
T8492 |
prep |
than,greater |
R5851 |
T8494 |
T8493 |
pobj |
that,than |
R5852 |
T8495 |
T8494 |
prep |
of,that |
R5853 |
T8496 |
T8497 |
nmod |
T,fork |
R5854 |
T8497 |
T8499 |
nmod |
fork,CGG |
R5855 |
T8498 |
T8497 |
punct |
-,fork |
R5856 |
T8499 |
T8495 |
pobj |
CGG,of |
R5857 |
T8500 |
T8497 |
punct |
/,fork |
R5858 |
T8501 |
T8499 |
punct |
(,CGG |
R5859 |
T8502 |
T8499 |
nmod |
GCC,CGG |
R5860 |
T8503 |
T8499 |
punct |
:,CGG |
R5861 |
T8504 |
T8499 |
punct |
),CGG |
R5862 |
T8505 |
T8499 |
nummod |
10,CGG |
R5863 |
T8506 |
T8485 |
punct |
", ",displaced |
R5864 |
T8507 |
T8485 |
advcl |
indicating,displaced |
R5865 |
T8508 |
T8509 |
mark |
that,is |
R5866 |
T8509 |
T8507 |
ccomp |
is,indicating |
R5867 |
T8510 |
T8511 |
det |
the,thermostability |
R5868 |
T8511 |
T8509 |
nsubj |
thermostability,is |
R5869 |
T8512 |
T8511 |
prep |
of,thermostability |
R5870 |
T8513 |
T8514 |
det |
the,segment |
R5871 |
T8514 |
T8512 |
pobj |
segment,of |
R5872 |
T8515 |
T8514 |
compound |
duplex,segment |
R5873 |
T8516 |
T8511 |
punct |
", ",thermostability |
R5874 |
T8517 |
T8511 |
cc |
not,thermostability |
R5875 |
T8518 |
T8519 |
det |
the,lack |
R5876 |
T8519 |
T8511 |
conj |
lack,thermostability |
R5877 |
T8520 |
T8519 |
prep |
of,lack |
R5878 |
T8521 |
T8522 |
compound |
AT,pair |
R5879 |
T8522 |
T8520 |
pobj |
pair,of |
R5880 |
T8523 |
T8522 |
compound |
base,pair |
R5881 |
T8524 |
T8509 |
punct |
", ",is |
R5882 |
T8525 |
T8509 |
acomp |
responsible,is |
R5883 |
T8526 |
T8525 |
prep |
for,responsible |
R5884 |
T8527 |
T8526 |
pobj |
inability,for |
R5885 |
T8528 |
T8527 |
prep |
of,inability |
R5886 |
T8529 |
T8528 |
pobj |
Mcm4,of |
R5887 |
T8530 |
T8529 |
punct |
/,Mcm4 |
R5888 |
T8531 |
T8529 |
nummod |
6,Mcm4 |
R5889 |
T8532 |
T8529 |
punct |
/,Mcm4 |
R5890 |
T8533 |
T8529 |
nummod |
7,Mcm4 |
R5891 |
T8534 |
T8535 |
aux |
to,displace |
R5892 |
T8535 |
T8527 |
acl |
displace,inability |
R5893 |
T8536 |
T8537 |
det |
the,duplex |
R5894 |
T8537 |
T8535 |
dobj |
duplex,displace |
R5895 |
T8538 |
T8485 |
punct |
.,displaced |
R3787 |
T5598 |
T5568 |
conj |
unwound,unwound |