PMC:1134658 / 9490-9790
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5638 | 3-11 | VB | denotes | revealed |
| T5639 | 12-16 | IN | denotes | that |
| T5640 | 17-20 | DT | denotes | the |
| T5641 | 21-34 | JJ | denotes | BMP-6-induced |
| T5642 | 35-47 | NN | denotes | upregulation |
| T5643 | 48-50 | IN | denotes | of |
| T5644 | 51-54 | NN | denotes | Id1 |
| T5645 | 55-59 | NN | denotes | mRNA |
| T5646 | 60-64 | RB | denotes | also |
| T5647 | 65-68 | VB | denotes | was |
| T5648 | 69-79 | VB | denotes | correlated |
| T5649 | 80-84 | IN | denotes | with |
| T5650 | 85-97 | NN | denotes | upregulation |
| T5651 | 98-100 | IN | denotes | of |
| T5652 | 101-104 | NN | denotes | Id1 |
| T5653 | 105-112 | NN | denotes | protein |
| T5654 | 113-115 | RB | denotes | as |
| T5655 | 116-120 | RB | denotes | well |
| T5656 | 122-125 | DT | denotes | The |
| T5657 | 126-134 | NN | denotes | increase |
| T5658 | 135-137 | IN | denotes | in |
| T5659 | 138-141 | NN | denotes | Id1 |
| T5660 | 142-149 | NN | denotes | protein |
| T5661 | 150-155 | NN | denotes | level |
| T5662 | 156-159 | VB | denotes | was |
| T5663 | 160-170 | JJ | denotes | detectable |
| T5664 | 171-176 | IN | denotes | after |
| T5665 | 177-180 | CD | denotes | one |
| T5666 | 181-185 | NN | denotes | hour |
| T5667 | 186-189 | CC | denotes | and |
| T5668 | 190-199 | VB | denotes | increased |
| T5669 | 200-205 | IN | denotes | until |
| T5670 | 206-208 | CD | denotes | 24 |
| T5671 | 209-214 | NN | denotes | hours |
| T5672 | 215-220 | IN | denotes | after |
| T5673 | 221-226 | NN | denotes | BMP-6 |
| T5674 | 227-235 | NN | denotes | addition |
| T5675 | 235-236 | -COMMA- | denotes | , |
| T5676 | 237-244 | VB | denotes | showing |
| T5677 | 245-246 | DT | denotes | a |
| T5678 | 247-254 | JJ | denotes | 16-fold |
| T5679 | 255-267 | NN | denotes | upregulation |
| T5680 | 268-276 | VB | denotes | compared |
| T5681 | 277-281 | IN | denotes | with |
| T5682 | 282-284 | NN | denotes | t0 |
| T5683 | 285-286 | -LRB- | denotes | ( |
| T5684 | 286-287 | NN | denotes | p |
| T5685 | 288-289 | NN | denotes | ≤ |
| T5686 | 290-295 | CD | denotes | 0.020 |
| T5687 | 295-296 | -COMMA- | denotes | , |
| T5688 | 297-298 | NN | denotes | n |
| T5689 | 299-300 | SYM | denotes | = |
| R4424 | T5642 | T5640 | arg1Of | upregulation,the |
| R4425 | T5642 | T5641 | arg1Of | upregulation,BMP-6-induced |
| R4426 | T5642 | T5643 | arg1Of | upregulation,of |
| R4427 | T5642 | T5647 | arg1Of | upregulation,was |
| R4428 | T5642 | T5648 | arg2Of | upregulation,correlated |
| R4429 | T5645 | T5643 | arg2Of | mRNA,of |
| R4430 | T5645 | T5644 | arg1Of | mRNA,Id1 |
| R4431 | T5648 | T5638 | arg2Of | correlated,revealed |
| R4432 | T5648 | T5639 | arg1Of | correlated,that |
| R4433 | T5648 | T5646 | arg1Of | correlated,also |
| R4434 | T5648 | T5647 | arg2Of | correlated,was |
| R4435 | T5648 | T5649 | arg1Of | correlated,with |
| R4436 | T5648 | T5655 | arg1Of | correlated,well |
| R4437 | T5650 | T5649 | arg2Of | upregulation,with |
| R4438 | T5650 | T5651 | arg1Of | upregulation,of |
| R4439 | T5653 | T5651 | arg2Of | protein,of |
| R4440 | T5653 | T5652 | arg1Of | protein,Id1 |
| R4441 | T5655 | T5654 | arg1Of | well,as |
| R4442 | T5657 | T5656 | arg1Of | increase,The |
| R4443 | T5657 | T5658 | arg1Of | increase,in |
| R4444 | T5657 | T5662 | arg1Of | increase,was |
| R4445 | T5657 | T5663 | arg1Of | increase,detectable |
| R4446 | T5657 | T5668 | arg1Of | increase,increased |
| R4447 | T5661 | T5658 | arg2Of | level,in |
| R4448 | T5661 | T5659 | arg1Of | level,Id1 |
| R4449 | T5661 | T5660 | arg1Of | level,protein |
| R4450 | T5662 | T5664 | arg1Of | was,after |
| R4451 | T5662 | T5667 | arg1Of | was,and |
| R4452 | T5663 | T5662 | arg2Of | detectable,was |
| R4453 | T5666 | T5664 | arg2Of | hour,after |
| R4454 | T5666 | T5665 | arg1Of | hour,one |
| R4455 | T5667 | T5675 | arg1Of | and,"," |
| R4456 | T5667 | T5676 | modOf | and,showing |
| R4457 | T5668 | T5667 | arg2Of | increased,and |
| R4458 | T5668 | T5669 | arg1Of | increased,until |
| R4459 | T5668 | T5672 | arg1Of | increased,after |
| R4460 | T5671 | T5669 | arg2Of | hours,until |
| R4461 | T5671 | T5670 | arg1Of | hours,24 |
| R4462 | T5674 | T5672 | arg2Of | addition,after |
| R4463 | T5674 | T5673 | arg1Of | addition,BMP-6 |
| R4464 | T5679 | T5676 | arg2Of | upregulation,showing |
| R4465 | T5679 | T5677 | arg1Of | upregulation,a |
| R4466 | T5679 | T5678 | arg1Of | upregulation,16-fold |
| R4467 | T5679 | T5680 | arg1Of | upregulation,compared |
| R4468 | T5681 | T5680 | arg2Of | with,compared |
| R4469 | T5682 | T5681 | arg2Of | t0,with |
| R4470 | T5682 | T5683 | arg1Of | t0,( |
| R4472 | T5685 | T5683 | arg2Of | ≤,( |
| R4473 | T5685 | T5684 | arg1Of | ≤,p |
| R4474 | T5685 | T5686 | arg1Of | ≤,0.020 |
| R4475 | T5685 | T5687 | arg1Of | ≤,"," |
| R4476 | T5688 | T5687 | arg2Of | n,"," |
| R4477 | T5688 | T5689 | arg1Of | n,= |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6035 | 3-11 | VBD | denotes | revealed |
| T6036 | 12-16 | IN | denotes | that |
| T6037 | 17-20 | DT | denotes | the |
| T6038 | 21-34 | JJ | denotes | BMP-6-induced |
| T6039 | 35-47 | NN | denotes | upregulation |
| T6040 | 48-50 | IN | denotes | of |
| T6041 | 51-54 | NNP | denotes | Id1 |
| T6042 | 55-59 | NNP | denotes | mRNA |
| T6043 | 60-64 | RB | denotes | also |
| T6044 | 65-68 | VBD | denotes | was |
| T6045 | 69-79 | VBN | denotes | correlated |
| T6046 | 80-84 | IN | denotes | with |
| T6047 | 85-97 | NN | denotes | upregulation |
| T6048 | 98-100 | IN | denotes | of |
| T6049 | 101-104 | JJ | denotes | Id1 |
| T6050 | 105-112 | NN | denotes | protein |
| T6051 | 113-115 | RB | denotes | as |
| T6052 | 116-120 | RB | denotes | well |
| T6053 | 120-121 | . | denotes | . |
| T6054 | 122-125 | DT | denotes | The |
| T6055 | 126-134 | NN | denotes | increase |
| T6056 | 135-137 | IN | denotes | in |
| T6057 | 138-141 | JJ | denotes | Id1 |
| T6058 | 142-149 | NN | denotes | protein |
| T6059 | 150-155 | NN | denotes | level |
| T6060 | 156-159 | VBD | denotes | was |
| T6061 | 160-170 | JJ | denotes | detectable |
| T6062 | 171-176 | IN | denotes | after |
| T6063 | 177-180 | CD | denotes | one |
| T6064 | 181-185 | NN | denotes | hour |
| T6065 | 186-189 | CC | denotes | and |
| T6066 | 190-199 | VBD | denotes | increased |
| T6067 | 200-205 | IN | denotes | until |
| T6068 | 206-208 | CD | denotes | 24 |
| T6069 | 209-214 | NNS | denotes | hours |
| T6070 | 215-220 | IN | denotes | after |
| T6071 | 221-226 | NNP | denotes | BMP-6 |
| T6072 | 227-235 | NN | denotes | addition |
| T6073 | 235-236 | , | denotes | , |
| T6074 | 237-244 | VBG | denotes | showing |
| T6075 | 245-246 | DT | denotes | a |
| T6076 | 247-254 | JJ | denotes | 16-fold |
| T6077 | 255-267 | NN | denotes | upregulation |
| T6078 | 268-276 | VBN | denotes | compared |
| T6079 | 277-281 | IN | denotes | with |
| T6080 | 282-284 | CD | denotes | t0 |
| T6081 | 285-286 | -LRB- | denotes | ( |
| T6082 | 286-287 | NN | denotes | p |
| T6083 | 288-289 | NN | denotes | ≤ |
| T6084 | 290-295 | CD | denotes | 0.020 |
| T6085 | 295-296 | , | denotes | , |
| T6086 | 297-298 | VBP | denotes | n |
| T6087 | 299-300 | SYM | denotes | = |
| R4754 | T6035 | T6035 | ROOT | revealed,revealed |
| R4755 | T6036 | T6045 | mark | that,correlated |
| R4756 | T6037 | T6039 | det | the,upregulation |
| R4757 | T6038 | T6039 | amod | BMP-6-induced,upregulation |
| R4758 | T6039 | T6045 | nsubjpass | upregulation,correlated |
| R4759 | T6040 | T6039 | prep | of,upregulation |
| R4760 | T6041 | T6042 | compound | Id1,mRNA |
| R4761 | T6042 | T6040 | pobj | mRNA,of |
| R4762 | T6043 | T6045 | advmod | also,correlated |
| R4763 | T6044 | T6045 | auxpass | was,correlated |
| R4764 | T6045 | T6035 | ccomp | correlated,revealed |
| R4765 | T6046 | T6045 | prep | with,correlated |
| R4766 | T6047 | T6046 | pobj | upregulation,with |
| R4767 | T6048 | T6047 | prep | of,upregulation |
| R4768 | T6049 | T6050 | amod | Id1,protein |
| R4769 | T6050 | T6048 | pobj | protein,of |
| R4770 | T6051 | T6052 | advmod | as,well |
| R4771 | T6052 | T6045 | advmod | well,correlated |
| R4772 | T6053 | T6035 | punct | .,revealed |
| R4773 | T6054 | T6055 | det | The,increase |
| R4774 | T6055 | T6060 | nsubj | increase,was |
| R4775 | T6056 | T6055 | prep | in,increase |
| R4776 | T6057 | T6059 | amod | Id1,level |
| R4777 | T6058 | T6059 | compound | protein,level |
| R4778 | T6059 | T6056 | pobj | level,in |
| R4779 | T6060 | T6086 | ccomp | was,n |
| R4780 | T6061 | T6060 | acomp | detectable,was |
| R4781 | T6062 | T6060 | prep | after,was |
| R4782 | T6063 | T6064 | nummod | one,hour |
| R4783 | T6064 | T6062 | pobj | hour,after |
| R4784 | T6065 | T6060 | cc | and,was |
| R4785 | T6066 | T6060 | conj | increased,was |
| R4786 | T6067 | T6066 | prep | until,increased |
| R4787 | T6068 | T6069 | nummod | 24,hours |
| R4788 | T6069 | T6074 | npadvmod | hours,showing |
| R4789 | T6070 | T6074 | prep | after,showing |
| R4790 | T6071 | T6072 | compound | BMP-6,addition |
| R4791 | T6072 | T6070 | pobj | addition,after |
| R4792 | T6073 | T6074 | punct | ",",showing |
| R4793 | T6074 | T6066 | advcl | showing,increased |
| R4794 | T6075 | T6077 | det | a,upregulation |
| R4795 | T6076 | T6077 | amod | 16-fold,upregulation |
| R4796 | T6077 | T6074 | dobj | upregulation,showing |
| R4797 | T6078 | T6074 | prep | compared,showing |
| R4798 | T6079 | T6078 | prep | with,compared |
| R4799 | T6080 | T6084 | nummod | t0,0.020 |
| R4800 | T6081 | T6083 | punct | (,≤ |
| R4801 | T6082 | T6083 | compound | p,≤ |
| R4802 | T6083 | T6084 | nummod | ≤,0.020 |
| R4803 | T6084 | T6079 | pobj | 0.020,with |
| R4804 | T6085 | T6086 | punct | ",",n |
| R4805 | T6086 | T6086 | ROOT | n,n |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6357 | 21-26 | Protein | denotes | BMP-6 |
| T6358 | 27-34 | Positive_regulation | denotes | induced |
| T6359 | 35-47 | Positive_regulation | denotes | upregulation |
| T6360 | 51-54 | Protein | denotes | Id1 |
| T6361 | 69-79 | Positive_regulation | denotes | correlated |
| T6362 | 85-97 | Positive_regulation | denotes | upregulation |
| T6363 | 101-104 | Protein | denotes | Id1 |
| T6364 | 126-134 | Positive_regulation | denotes | increase |
| T6365 | 138-141 | Protein | denotes | Id1 |
| T6366 | 190-199 | Positive_regulation | denotes | increased |
| T6367 | 221-226 | Protein | denotes | BMP-6 |
| T6368 | 255-267 | Positive_regulation | denotes | upregulation |
| R5021 | T6357 | T6358 | causeOf | BMP-6,induced |
| R5022 | T6359 | T6358 | themeOf | upregulation,induced |
| R5023 | T6359 | T6361 | causeOf | upregulation,correlated |
| R5024 | T6360 | T6359 | themeOf | Id1,upregulation |
| R5025 | T6362 | T6361 | themeOf | upregulation,correlated |
| R5026 | T6363 | T6362 | themeOf | Id1,upregulation |
| R5027 | T6365 | T6364 | themeOf | Id1,increase |
| R5028 | T6365 | T6366 | themeOf | Id1,increased |
| R5029 | T6365 | T6368 | themeOf | Id1,upregulation |
| R5030 | T6367 | T6364 | causeOf | BMP-6,increase |
| R5031 | T6367 | T6366 | causeOf | BMP-6,increased |
| R5032 | T6367 | T6368 | causeOf | BMP-6,upregulation |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6205 | 35-47 | Positive_regulation | denotes | upregulation |
| T6206 | 51-59 | Protein | denotes | Id1 mRNA |
| T6207 | 85-97 | Positive_regulation | denotes | upregulation |
| T6208 | 101-112 | Protein | denotes | Id1 protein |
| T6209 | 126-134 | Positive_regulation | denotes | increase |
| T6210 | 138-149 | Protein | denotes | Id1 protein |
| R4906 | T6206 | T6205 | themeOf | Id1 mRNA,upregulation |
| R4907 | T6208 | T6207 | themeOf | Id1 protein,upregulation |
| R4908 | T6210 | T6209 | themeOf | Id1 protein,increase |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5419 | 21-26 | Protein | denotes | BMP-6 |
| T5420 | 27-34 | Positive_regulation | denotes | induced |
| T5421 | 35-47 | Positive_regulation | denotes | upregulation |
| T5422 | 51-54 | Protein | denotes | Id1 |
| T5423 | 69-79 | Positive_regulation | denotes | correlated |
| T5424 | 85-97 | Positive_regulation | denotes | upregulation |
| T5425 | 101-104 | Protein | denotes | Id1 |
| T5426 | 126-134 | Positive_regulation | denotes | increase |
| T5427 | 138-141 | Protein | denotes | Id1 |
| T5428 | 190-199 | Positive_regulation | denotes | increased |
| T5429 | 221-226 | Protein | denotes | BMP-6 |
| T5430 | 255-267 | Positive_regulation | denotes | upregulation |
| R4223 | T5419 | T5420 | causeOf | BMP-6,induced |
| R4224 | T5421 | T5420 | themeOf | upregulation,induced |
| R4225 | T5421 | T5423 | causeOf | upregulation,correlated |
| R4226 | T5422 | T5421 | themeOf | Id1,upregulation |
| R4227 | T5424 | T5423 | themeOf | upregulation,correlated |
| R4228 | T5425 | T5424 | themeOf | Id1,upregulation |
| R4229 | T5427 | T5426 | themeOf | Id1,increase |
| R4230 | T5427 | T5428 | themeOf | Id1,increased |
| R4231 | T5427 | T5430 | themeOf | Id1,upregulation |
| R4232 | T5429 | T5426 | causeOf | BMP-6,increase |
| R4233 | T5429 | T5428 | causeOf | BMP-6,increased |
| R4234 | T5429 | T5430 | causeOf | BMP-6,upregulation |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5812 | 21-24 | P12643 | denotes | BMP |
| T5813 | 21-24 | P12644 | denotes | BMP |
| T5814 | 21-24 | P18075 | denotes | BMP |
| T5815 | 21-24 | P22004 | denotes | BMP |
| T5816 | 21-26 | P22004 | denotes | BMP-6 |
| T5817 | 51-54 | P41134 | denotes | Id1 |
| T5818 | 101-104 | P41134 | denotes | Id1 |
| T5819 | 138-141 | P41134 | denotes | Id1 |
| T5820 | 221-224 | P12644 | denotes | BMP |
| T5821 | 221-224 | P18075 | denotes | BMP |
| T5822 | 221-224 | P12643 | denotes | BMP |
| T5823 | 221-224 | P22004 | denotes | BMP |
| T5824 | 221-226 | P22004 | denotes | BMP-6 |
test2
| Id | Subject | Object | Predicate | Lexical cue | Negation |
|---|---|---|---|---|---|
| T5368 | 21-26 | Protein | denotes | BMP-6 | true |
| T5369 | 27-34 | Positive_regulation | denotes | induced | |
| T5370 | 35-47 | Positive_regulation | denotes | upregulation | |
| T5371 | 51-54 | Protein | denotes | Id1 | |
| T5372 | 85-97 | Positive_regulation | denotes | upregulation | |
| T5373 | 101-104 | Protein | denotes | Id1 | |
| T5374 | 126-134 | Positive_regulation | denotes | increase | |
| T5375 | 138-141 | Protein | denotes | Id1 | |
| T5376 | 190-199 | Positive_regulation | denotes | increased | |
| T5377 | 221-226 | Protein | denotes | BMP-6 | |
| T5378 | 255-267 | Positive_regulation | denotes | upregulation | |
| R4182 | T5368 | T5369 | causeOf | BMP-6,induced | |
| R4183 | T5370 | T5369 | themeOf | upregulation,induced | |
| R4184 | T5371 | T5370 | themeOf | Id1,upregulation | |
| R4185 | T5373 | T5372 | themeOf | Id1,upregulation | |
| R4186 | T5374 | T5376 | themeOf | increase,increased | |
| R4187 | T5375 | T5378 | themeOf | Id1,upregulation | |
| R4188 | T5375 | T5374 | themeOf | Id1,increase | |
| R4189 | T5375 | T5376 | themeOf | Id1,increased | |
| R4190 | T5377 | T5376 | causeOf | BMP-6,increased | |
| R4191 | T5377 | T5374 | causeOf | BMP-6,increase | |
| R4192 | T5378 | T5376 | causeOf | upregulation,increased |
tees-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1096 | 21-26 | D055418 | denotes | BMP-6 |
| T1097 | 21-26 | D055418 | denotes | BMP-6 |
| T1098 | 21-26 | Q04906 | denotes | BMP-6 |
| T1099 | 21-26 | PR:000000167 | denotes | BMP-6 |
| T1100 | 21-26 | P20722 | denotes | BMP-6 |
| T1101 | 21-26 | PR:Q04906 | denotes | BMP-6 |
| T1102 | 21-26 | P22004 | denotes | BMP-6 |
| T1103 | 21-26 | PR:P22004 | denotes | BMP-6 |
| T1104 | 21-26 | PR:P20722 | denotes | BMP-6 |
| T1105 | 51-54 | PR:P41134 | denotes | Id1 |
| T1106 | 51-54 | PR:P20067 | denotes | Id1 |
| T1107 | 51-54 | PR:P41135 | denotes | Id1 |
| T1108 | 51-54 | PR:000000039 | denotes | Id1 |
| T1109 | 55-59 | D012333 | denotes | mRNA |
| T1110 | 55-59 | CHEBI:33699 | denotes | mRNA |
| T1111 | 55-59 | SO:0000234 | denotes | mRNA |
| T1112 | 101-104 | PR:P41134 | denotes | Id1 |
| T1113 | 101-104 | PR:P20067 | denotes | Id1 |
| T1114 | 101-104 | PR:P41135 | denotes | Id1 |
| T1115 | 101-104 | PR:000000039 | denotes | Id1 |
| T1116 | 105-112 | CHEBI:36080 | denotes | protein |
| T1117 | 105-112 | CHEBI:11122 | denotes | protein |
| T1118 | 105-112 | PR:000000001 | denotes | protein |
| T1119 | 105-112 | SO:0000104 | denotes | protein |
| T1120 | 105-112 | GO:0003675 | denotes | protein |
| T1121 | 138-141 | PR:P41134 | denotes | Id1 |
| T1122 | 138-141 | PR:P20067 | denotes | Id1 |
| T1123 | 138-141 | PR:P41135 | denotes | Id1 |
| T1124 | 138-141 | PR:000000039 | denotes | Id1 |
| T1125 | 142-149 | PR:000000001 | denotes | protein |
| T1126 | 142-149 | GO:0003675 | denotes | protein |
| T1127 | 142-149 | CHEBI:36080 | denotes | protein |
| T1128 | 142-149 | CHEBI:11122 | denotes | protein |
| T1129 | 142-149 | SO:0000104 | denotes | protein |
| T1130 | 221-226 | Q04906 | denotes | BMP-6 |
| T1131 | 221-226 | PR:000000167 | denotes | BMP-6 |
| T1132 | 221-226 | P20722 | denotes | BMP-6 |
| T1133 | 221-226 | PR:Q04906 | denotes | BMP-6 |
| T1134 | 221-226 | P22004 | denotes | BMP-6 |
| T1135 | 221-226 | PR:P22004 | denotes | BMP-6 |
| T1136 | 221-226 | PR:P20722 | denotes | BMP-6 |
| T1137 | 221-226 | D055418 | denotes | BMP-6 |
| T1138 | 221-226 | D055418 | denotes | BMP-6 |
| T1139 | 250-254 | PR:000022679 | denotes | fold |
| T1140 | 250-254 | PR:Q2FZJ6 | denotes | fold |
| T1141 | 250-254 | PR:A5I112 | denotes | fold |
| T1142 | 250-254 | PR:P24186 | denotes | fold |