> top > docs > PMC:1134658 > spans > 8929-9108 > annotations

PMC:1134658 / 8929-9108 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5543 3-9 NN denotes points
T5544 10-16 IN denotes before
T5545 17-28 NN denotes preparation
T5546 29-31 IN denotes of
T5547 32-37 JJ denotes total
T5548 38-41 NN denotes RNA
T5549 43-46 DT denotes The
T5550 47-53 NN denotes amount
T5551 54-56 IN denotes of
T5552 57-64 NN denotes Id1–Id4
T5553 65-69 NN denotes mRNA
T5554 70-73 VB denotes was
T5555 74-84 VB denotes quantified
T5556 85-87 IN denotes by
T5557 88-97 JJ denotes real-time
T5558 98-104 NN denotes RT-PCR
T5559 106-119 RB denotes Interestingly
T5560 119-120 -COMMA- denotes ,
T5561 121-123 PRP denotes we
T5562 124-132 VB denotes observed
T5563 133-134 DT denotes a
T5564 135-143 JJ denotes specific
T5565 144-153 JJ denotes four-fold
T5566 154-166 NN denotes upregulation
T5567 167-169 IN denotes of
T5568 170-173 NN denotes Id1
T5569 174-178 NN denotes mRNA
R4329 T5545 T5544 arg2Of preparation,before
R4330 T5545 T5546 arg1Of preparation,of
R4331 T5548 T5546 arg2Of RNA,of
R4332 T5548 T5547 arg1Of RNA,total
R4333 T5550 T5549 arg1Of amount,The
R4334 T5550 T5551 arg1Of amount,of
R4335 T5550 T5554 arg1Of amount,was
R4336 T5550 T5555 arg2Of amount,quantified
R4337 T5553 T5551 arg2Of mRNA,of
R4338 T5553 T5552 arg1Of mRNA,Id1–Id4
R4339 T5555 T5554 arg2Of quantified,was
R4340 T5558 T5555 arg1Of RT-PCR,quantified
R4341 T5558 T5556 arg2Of RT-PCR,by
R4342 T5558 T5557 arg1Of RT-PCR,real-time
R4343 T5561 T5562 arg1Of we,observed
R4344 T5562 T5559 arg1Of observed,Interestingly
R4345 T5562 T5560 arg1Of observed,","
R4347 T5566 T5562 arg2Of upregulation,observed
R4348 T5566 T5563 arg1Of upregulation,a
R4349 T5566 T5564 arg1Of upregulation,specific
R4350 T5566 T5565 arg1Of upregulation,four-fold
R4351 T5566 T5567 arg1Of upregulation,of
R4352 T5569 T5567 arg2Of mRNA,of
R4353 T5569 T5568 arg1Of mRNA,Id1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5938 32-37 JJ denotes total
T5934 3-9 NNS denotes points
T5935 10-16 IN denotes before
T5936 17-28 NN denotes preparation
T5937 29-31 IN denotes of
T5939 38-41 NNP denotes RNA
T5940 41-42 . denotes .
T5941 43-46 DT denotes The
T5942 47-53 NN denotes amount
T5943 54-56 IN denotes of
T5944 57-60 NNP denotes Id1
T5945 61-64 NNP denotes Id4
T5946 65-69 NNP denotes mRNA
T5947 70-73 VBD denotes was
T5948 74-84 VBN denotes quantified
T5949 85-87 IN denotes by
T5950 88-97 JJ denotes real-time
T5951 98-104 NN denotes RT-PCR
T5952 104-105 . denotes .
T5953 106-119 RB denotes Interestingly
T5954 119-120 , denotes ,
T5955 121-123 PRP denotes we
T5956 124-132 VBD denotes observed
T5957 133-134 DT denotes a
T5958 135-143 JJ denotes specific
T5959 144-153 RB denotes four-fold
T5960 154-166 NN denotes upregulation
T5961 167-169 IN denotes of
T5962 170-173 NNP denotes Id1
T5963 174-178 NNP denotes mRNA
R4655 T5936 T5935 pobj preparation,before
R4656 T5937 T5936 prep of,preparation
R4657 T5938 T5939 amod total,RNA
R4658 T5939 T5937 pobj RNA,of
R4660 T5941 T5942 det The,amount
R4661 T5942 T5948 nsubjpass amount,quantified
R4662 T5943 T5942 prep of,amount
R4663 T5944 T5943 pobj Id1,of
R4664 T5945 T5946 compound Id4,mRNA
R4665 T5946 T5942 appos mRNA,amount
R4666 T5947 T5948 auxpass was,quantified
R4667 T5948 T5948 ROOT quantified,quantified
R4668 T5949 T5948 agent by,quantified
R4669 T5950 T5951 amod real-time,RT-PCR
R4670 T5951 T5949 pobj RT-PCR,by
R4671 T5952 T5948 punct .,quantified
R4672 T5953 T5956 advmod Interestingly,observed
R4673 T5954 T5956 punct ",",observed
R4674 T5955 T5956 nsubj we,observed
R4675 T5956 T5956 ROOT observed,observed
R4676 T5957 T5960 det a,upregulation
R4677 T5958 T5960 amod specific,upregulation
R4678 T5959 T5960 amod four-fold,upregulation
R4679 T5960 T5956 dobj upregulation,observed
R4680 T5961 T5960 prep of,upregulation
R4681 T5962 T5963 compound Id1,mRNA
R4682 T5963 T5961 pobj mRNA,of

GO-BP

Id Subject Object Predicate Lexical cue
T5459 98-100 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

GO-MF

Id Subject Object Predicate Lexical cue
T6182 98-100 http://purl.obolibrary.org/obo/GO_0003964 denotes RT

sentences

Id Subject Object Predicate Lexical cue
T5447 43-105 Sentence denotes The amount of Id1–Id4 mRNA was quantified by real-time RT-PCR.
T75 43-105 Sentence denotes The amount of Id1–Id4 mRNA was quantified by real-time RT-PCR.

events-check-again

Id Subject Object Predicate Lexical cue
T6342 57-60 Protein denotes Id1
T6343 61-64 Protein denotes Id4
T6344 154-166 Positive_regulation denotes upregulation
T6345 170-173 Protein denotes Id1
R5009 T6345 T6344 themeOf Id1,upregulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T6193 57-69 Protein denotes Id1–Id4 mRNA
T6194 154-166 Positive_regulation denotes upregulation
T6195 170-178 Protein denotes Id1 mRNA
R4900 T6195 T6194 themeOf Id1 mRNA,upregulation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T5404 57-60 Protein denotes Id1
T5405 61-64 Protein denotes Id4
T5406 154-166 Positive_regulation denotes upregulation
T5407 170-173 Protein denotes Id1
R4211 T5407 T5406 themeOf Id1,upregulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5795 57-60 P41134 denotes Id1
T5796 61-64 P47928 denotes Id4
T5797 170-173 P41134 denotes Id1

test2

Id Subject Object Predicate Lexical cue Negation
T5356 57-60 Protein denotes Id1 true
T5357 61-64 Protein denotes Id4 true
T5358 154-166 Positive_regulation denotes upregulation true
T5359 170-173 Protein denotes Id1
R4176 T5359 T5358 themeOf Id1,upregulation

tees-test

Id Subject Object Predicate Lexical cue
T1019 38-41 SO:0000356 denotes RNA
T1020 38-41 CHEBI:33697 denotes RNA
T1021 38-41 D012313 denotes RNA
T1022 38-41 GO:0005562 denotes RNA
T1023 57-60 PR:P41134 denotes Id1
T1024 57-60 PR:P20067 denotes Id1
T1025 57-60 PR:P41135 denotes Id1
T1026 57-60 PR:000000039 denotes Id1
T1027 61-64 PR:P47928 denotes Id4
T1028 61-64 PR:P41139 denotes Id4
T1029 61-64 PR:000000042 denotes Id4
T1030 65-69 D012333 denotes mRNA
T1031 65-69 CHEBI:33699 denotes mRNA
T1032 65-69 SO:0000234 denotes mRNA
T1033 101-104 Q41249 denotes PCR
T1034 101-104 O66148 denotes PCR
T1035 101-104 Q59987 denotes PCR
T1036 101-104 Q01289 denotes PCR
T1037 101-104 O80333 denotes PCR
T1038 101-104 P15904 denotes PCR
T1039 101-104 Q9SDT1 denotes PCR
T1040 101-104 Q39617 denotes PCR
T1041 149-153 PR:000022679 denotes fold
T1042 149-153 PR:Q2FZJ6 denotes fold
T1043 149-153 PR:A5I112 denotes fold
T1044 149-153 PR:P24186 denotes fold
T1045 170-173 PR:P41134 denotes Id1
T1046 170-173 PR:P20067 denotes Id1
T1047 170-173 PR:P41135 denotes Id1
T1048 170-173 PR:000000039 denotes Id1
T1049 174-178 D012333 denotes mRNA
T1050 174-178 CHEBI:33699 denotes mRNA
T1051 174-178 SO:0000234 denotes mRNA