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PMC:1134658 / 7273-7513 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4197 10-15 VB denotes shown
T4198 16-18 TO denotes to
T4199 19-23 VB denotes bind
T4200 24-29 NN denotes BMP-6
T4201 30-31 -LRB- denotes [
T4202 31-33 CD denotes 16
T4203 33-34 -RRB- denotes ]
T4625 37-42 NN denotes BMP-6
T4626 43-50 VB denotes induces
T4627 51-66 NN denotes phosphorylation
T4628 67-69 IN denotes of
T4629 70-79 NN denotes Smad1/5/8
T4630 80-84 IN denotes Upon
T4631 85-91 NN denotes ligand
T4632 92-99 NN denotes binding
T4633 99-100 -COMMA- denotes ,
T4634 101-104 DT denotes the
T4635 105-109 NN denotes type
T4636 110-112 CD denotes II
T4637 113-121 NN denotes receptor
T4638 122-141 VB denotes transphosphorylates
T4639 142-145 CC denotes and
T4640 146-155 VB denotes activates
T4641 156-159 DT denotes the
T4642 160-164 NN denotes type
T4643 165-166 CD denotes I
T4644 167-175 NN denotes receptor
T4645 177-181 NN denotes Type
T4646 182-183 CD denotes I
T4647 184-193 NN denotes receptors
T4648 194-197 MD denotes can
T4649 198-204 VB denotes signal
T4650 205-208 IN denotes via
T4651 209-216 JJ denotes several
T4652 217-225 NN denotes pathways
T4653 227-229 PRP denotes We
T4654 230-238 VB denotes examined
R3290 T4199 T4197 arg3Of bind,shown
R3291 T4199 T4198 arg1Of bind,to
R3292 T4199 T4201 arg1Of bind,[
R3293 T4200 T4199 arg2Of BMP-6,bind
R3294 T4202 T4201 arg2Of 16,[
R3295 T4203 T4201 arg3Of ],[
R3561 T4625 T4626 arg1Of BMP-6,induces
R3562 T4627 T4626 arg2Of phosphorylation,induces
R3563 T4627 T4628 arg1Of phosphorylation,of
R3564 T4629 T4628 arg2Of Smad1/5/8,of
R3565 T4632 T4630 arg2Of binding,Upon
R3566 T4632 T4631 arg1Of binding,ligand
R3567 T4637 T4634 arg1Of receptor,the
R3568 T4637 T4635 arg1Of receptor,type
R3569 T4637 T4636 arg1Of receptor,II
R3570 T4637 T4638 arg1Of receptor,transphosphorylates
R3571 T4637 T4640 arg1Of receptor,activates
R3572 T4638 T4639 arg1Of transphosphorylates,and
R3573 T4639 T4630 arg1Of and,Upon
R3574 T4639 T4633 arg1Of and,","
R3575 T4640 T4639 arg2Of activates,and
R3576 T4644 T4638 arg2Of receptor,transphosphorylates
R3577 T4644 T4640 arg2Of receptor,activates
R3578 T4644 T4641 arg1Of receptor,the
R3579 T4644 T4642 arg1Of receptor,type
R3580 T4644 T4643 arg1Of receptor,I
R3581 T4647 T4645 arg1Of receptors,Type
R3582 T4647 T4646 arg1Of receptors,I
R3583 T4647 T4648 arg1Of receptors,can
R3584 T4647 T4649 arg1Of receptors,signal
R3585 T4649 T4648 arg2Of signal,can
R3586 T4649 T4650 arg1Of signal,via
R3587 T4652 T4650 arg2Of pathways,via
R3588 T4652 T4651 arg1Of pathways,several
R3589 T4653 T4654 arg1Of We,examined

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4409 10-15 VBN denotes shown
T4410 16-18 TO denotes to
T4411 19-23 NN denotes bind
T4412 24-29 NN denotes BMP-6
T4413 30-31 NNP denotes [
T4414 31-33 CD denotes 16
T4415 33-34 NNP denotes ]
T4416 34-35 . denotes .
T4892 37-42 CD denotes BMP-6
T4893 43-50 VBZ denotes induces
T4894 51-66 NN denotes phosphorylation
T4895 67-69 IN denotes of
T4896 70-79 NNP denotes Smad1/5/8
T4897 80-84 IN denotes Upon
T4898 85-91 JJ denotes ligand
T4899 92-99 JJ denotes binding
T4900 99-100 , denotes ,
T4901 101-104 DT denotes the
T4902 105-109 NN denotes type
T4903 110-112 NNP denotes II
T4904 113-121 NN denotes receptor
T4905 122-141 NNS denotes transphosphorylates
T4906 142-145 CC denotes and
T4907 146-155 VBZ denotes activates
T4908 156-159 DT denotes the
T4909 160-164 NN denotes type
T4910 165-166 PRP denotes I
T4911 167-175 NN denotes receptor
T4912 175-176 . denotes .
T4913 177-181 NN denotes Type
T4914 182-183 PRP denotes I
T4915 184-193 NNS denotes receptors
T4916 194-197 MD denotes can
T4917 198-204 VB denotes signal
T4918 205-208 IN denotes via
T4919 209-216 JJ denotes several
T4920 217-225 NNS denotes pathways
T4921 225-226 . denotes .
T4922 227-229 PRP denotes We
T4923 230-238 VBD denotes examined
R3440 T4410 T4411 aux to,bind
R3441 T4411 T4409 xcomp bind,shown
R3442 T4412 T4413 compound BMP-6,[
R3443 T4413 T4411 dobj [,bind
R3444 T4414 T4415 nummod 16,]
R3445 T4415 T4413 appos ],[
R3773 T4892 T4893 nsubj BMP-6,induces
R3774 T4893 T4893 ROOT induces,induces
R3775 T4894 T4893 dobj phosphorylation,induces
R3776 T4895 T4894 prep of,phosphorylation
R3777 T4896 T4895 pobj Smad1/5/8,of
R3778 T4897 T4894 prep Upon,phosphorylation
R3779 T4898 T4899 compound ligand,binding
R3780 T4899 T4897 pobj binding,Upon
R3781 T4900 T4905 punct ",",transphosphorylates
R3782 T4901 T4905 det the,transphosphorylates
R3783 T4902 T4905 nmod type,transphosphorylates
R3784 T4903 T4905 compound II,transphosphorylates
R3785 T4904 T4905 compound receptor,transphosphorylates
R3786 T4905 T4893 conj transphosphorylates,induces
R3787 T4906 T4905 cc and,transphosphorylates
R3788 T4907 T4905 conj activates,transphosphorylates
R3789 T4908 T4909 det the,type
R3790 T4909 T4907 dobj type,activates
R3791 T4910 T4911 nsubj I,receptor
R3792 T4911 T4909 relcl receptor,type
R3793 T4912 T4893 punct .,induces
R3794 T4913 T4915 compound Type,receptors
R3795 T4914 T4915 compound I,receptors
R3796 T4915 T4917 nsubj receptors,signal
R3797 T4916 T4917 aux can,signal
R3798 T4917 T4917 ROOT signal,signal
R3799 T4918 T4917 prep via,signal
R3800 T4919 T4920 amod several,pathways
R3801 T4920 T4918 pobj pathways,via
R3802 T4921 T4917 punct .,signal
R3803 T4922 T4923 nsubj We,examined
R3804 T4923 T4923 ROOT examined,examined

GO-BP

Id Subject Object Predicate Lexical cue
T4609 51-66 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T4614 198-204 http://purl.obolibrary.org/obo/GO_0023052 denotes signal

GO-MF

Id Subject Object Predicate Lexical cue
T5104 85-91 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T5105 92-99 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T4599 37-79 Sentence denotes BMP-6 induces phosphorylation of Smad1/5/8
T4600 80-176 Sentence denotes Upon ligand binding, the type II receptor transphosphorylates and activates the type I receptor.
T4601 177-226 Sentence denotes Type I receptors can signal via several pathways.
T60 37-79 Sentence denotes BMP-6 induces phosphorylation of Smad1/5/8
T61 80-176 Sentence denotes Upon ligand binding, the type II receptor transphosphorylates and activates the type I receptor.
T62 177-226 Sentence denotes Type I receptors can signal via several pathways.

events-check-again

Id Subject Object Predicate Lexical cue
T4490 19-23 Binding denotes bind
T4491 24-29 Protein denotes BMP-6
T5222 37-42 Protein denotes BMP-6
T5223 43-50 Positive_regulation denotes induces
T5224 43-50 Positive_regulation denotes induces
T5225 43-50 Positive_regulation denotes induces
T5226 51-66 Phosphorylation denotes phosphorylation
T5227 51-66 Phosphorylation denotes phosphorylation
T5228 51-66 Phosphorylation denotes phosphorylation
T5229 70-75 Protein denotes Smad1
T5230 76-77 Protein denotes 5
T5231 78-79 Protein denotes 8
R3477 T4491 T4490 themeOf BMP-6,bind
R4073 T5222 T5225 causeOf BMP-6,induces
R4074 T5222 T5223 causeOf BMP-6,induces
R4075 T5222 T5224 causeOf BMP-6,induces
R4076 T5226 T5223 themeOf phosphorylation,induces
R4077 T5227 T5224 themeOf phosphorylation,induces
R4078 T5228 T5225 themeOf phosphorylation,induces
R4079 T5229 T5226 themeOf Smad1,phosphorylation
R4080 T5230 T5227 themeOf 5,phosphorylation
R4081 T5231 T5228 themeOf 8,phosphorylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4449 19-23 Binding denotes bind
T5112 37-42 Protein denotes BMP-6
T5113 43-50 Positive_regulation denotes induces
T5114 51-66 Phosphorylation denotes phosphorylation
T5115 70-79 Protein denotes Smad1/5/8
T5116 92-99 Binding denotes binding
T5117 105-121 Protein denotes type II receptor
T5118 122-141 Phosphorylation denotes transphosphorylates
T5119 146-155 Positive_regulation denotes activates
T5120 160-175 Protein denotes type I receptor
T5121 177-193 Protein denotes Type I receptors
R3985 T5112 T5113 causeOf BMP-6,induces
R3986 T5114 T5113 themeOf phosphorylation,induces
R3987 T5115 T5114 themeOf Smad1/5/8,phosphorylation
R3988 T5117 T5116 themeOf type II receptor,binding
R3989 T5117 T5118 themeOf type II receptor,transphosphorylates
R3990 T5117 T5119 causeOf type II receptor,activates
R3991 T5120 T5119 themeOf type I receptor,activates

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4050 19-23 Binding denotes bind
T4051 24-29 Protein denotes BMP-6
T4558 37-42 Protein denotes BMP-6
T4559 43-50 Positive_regulation denotes induces
T4560 43-50 Positive_regulation denotes induces
T4561 43-50 Positive_regulation denotes induces
T4562 51-66 Phosphorylation denotes phosphorylation
T4563 51-66 Phosphorylation denotes phosphorylation
T4564 51-66 Phosphorylation denotes phosphorylation
T4565 70-75 Protein denotes Smad1
T4566 76-77 Protein denotes 5
T4567 78-79 Protein denotes 8
R3150 T4051 T4050 themeOf BMP-6,bind
R3525 T4558 T4561 causeOf BMP-6,induces
R3526 T4558 T4559 causeOf BMP-6,induces
R3527 T4558 T4560 causeOf BMP-6,induces
R3528 T4562 T4559 themeOf phosphorylation,induces
R3529 T4563 T4560 themeOf phosphorylation,induces
R3530 T4564 T4561 themeOf phosphorylation,induces
R3531 T4565 T4562 themeOf Smad1,phosphorylation
R3532 T4566 T4563 themeOf 5,phosphorylation
R3533 T4567 T4564 themeOf 8,phosphorylation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4254 24-27 P22004 denotes BMP
T4255 24-27 P12643 denotes BMP
T4256 24-27 P18075 denotes BMP
T4257 24-27 P12644 denotes BMP
T4258 24-29 P22004 denotes BMP-6
T4831 37-40 P22004 denotes BMP
T4832 37-40 P18075 denotes BMP
T4833 37-40 P12644 denotes BMP
T4834 37-40 P12643 denotes BMP
T4835 37-42 P22004 denotes BMP-6
T4836 70-75 Q15797 denotes Smad1

test2

Id Subject Object Predicate Lexical cue
T4027 19-23 Binding denotes bind
T4028 24-29 Protein denotes BMP-6
R3140 T4028 T4027 themeOf BMP-6,bind

tees-test

Id Subject Object Predicate Lexical cue
T797 24-29 D055418 denotes BMP-6
T798 24-29 D055418 denotes BMP-6
T799 24-29 Q04906 denotes BMP-6
T800 24-29 PR:000000167 denotes BMP-6
T801 24-29 P20722 denotes BMP-6
T802 24-29 PR:Q04906 denotes BMP-6
T803 24-29 P22004 denotes BMP-6
T804 24-29 PR:P22004 denotes BMP-6
T805 24-29 PR:P20722 denotes BMP-6
T806 37-42 D055418 denotes BMP-6
T807 37-42 D055418 denotes BMP-6
T808 37-42 Q04906 denotes BMP-6
T809 37-42 PR:000000167 denotes BMP-6
T810 37-42 P20722 denotes BMP-6
T811 37-42 PR:Q04906 denotes BMP-6
T812 37-42 P22004 denotes BMP-6
T813 37-42 PR:P22004 denotes BMP-6
T814 37-42 PR:P20722 denotes BMP-6
T815 51-66 GO:0016310 denotes phosphorylation
T816 70-75 PR:Q9I8V2 denotes Smad1
T817 70-75 PR:P97588 denotes Smad1
T818 70-75 Q15797 denotes Smad1
T819 70-75 PR:000000363 denotes Smad1
T820 70-75 PR:P70340 denotes Smad1
T821 70-75 P70340 denotes Smad1
T822 70-75 Q9I962 denotes Smad1
T823 70-75 PR:Q15797 denotes Smad1
T824 70-75 P97588 denotes Smad1
T825 70-75 Q9I8V2 denotes Smad1
T826 70-75 Q1JQA2 denotes Smad1
T827 85-91 CHEBI:52214 denotes ligand
T828 85-91 GO:0005488 denotes ligand
T829 92-99 GO:0005488 denotes binding
T830 92-99 SO:0100018 denotes binding
T831 92-99 SO:0001091 denotes binding
T832 198-204 SO:0000725 denotes signal
T833 198-204 SO:0000418 denotes signal