PMC:1134658 / 3831-4006
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-coref
{"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T1605","span":{"begin":78,"end":94},"obj":"Anaphor"},{"id":"T1606","span":{"begin":95,"end":98},"obj":"Antecedent"},{"id":"T1607","span":{"begin":99,"end":102},"obj":"Antecedent"}],"relations":[{"id":"R1318","pred":"boundBy","subj":"T1605","obj":"T1606"},{"id":"R1319","pred":"boundBy","subj":"T1605","obj":"T1607"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2172","span":{"begin":6,"end":16},"obj":"NN"},{"id":"T2173","span":{"begin":17,"end":19},"obj":"IN"},{"id":"T2174","span":{"begin":20,"end":23},"obj":"DT"},{"id":"T2175","span":{"begin":24,"end":28},"obj":"NNP"},{"id":"T2176","span":{"begin":29,"end":39},"obj":"JJ"},{"id":"T2177","span":{"begin":40,"end":47},"obj":"NN"},{"id":"T2178","span":{"begin":48,"end":52},"obj":"IN"},{"id":"T2179","span":{"begin":53,"end":63},"obj":"JJ"},{"id":"T2180","span":{"begin":64,"end":74},"obj":"NN"},{"id":"T2181","span":{"begin":75,"end":77},"obj":"IN"},{"id":"T2182","span":{"begin":78,"end":81},"obj":"DT"},{"id":"T2183","span":{"begin":82,"end":88},"obj":"NN"},{"id":"T2184","span":{"begin":89,"end":94},"obj":"NNS"},{"id":"T2185","span":{"begin":95,"end":98},"obj":"VBP"},{"id":"T2186","span":{"begin":99,"end":102},"obj":"NNP"},{"id":"T2187","span":{"begin":102,"end":103},"obj":","},{"id":"T2188","span":{"begin":104,"end":108},"obj":"VBD"},{"id":"T2189","span":{"begin":109,"end":117},"obj":"VBN"},{"id":"T2190","span":{"begin":117,"end":118},"obj":"."},{"id":"T2191","span":{"begin":119,"end":126},"obj":"RB"},{"id":"T2192","span":{"begin":126,"end":127},"obj":","},{"id":"T2193","span":{"begin":128,"end":130},"obj":"PRP"},{"id":"T2194","span":{"begin":131,"end":143},"obj":"VBD"},{"id":"T2195","span":{"begin":144,"end":151},"obj":"IN"},{"id":"T2196","span":{"begin":152,"end":153},"obj":"NNP"},{"id":"T2197","span":{"begin":154,"end":159},"obj":"NNS"},{"id":"T2198","span":{"begin":160,"end":164},"obj":"RB"},{"id":"T2199","span":{"begin":165,"end":169},"obj":"VBD"}],"relations":[{"id":"R1695","pred":"advmod","subj":"T2198","obj":"T2199"},{"id":"R1697","pred":"ccomp","subj":"T2199","obj":"T2194"},{"id":"R1844","pred":"prep","subj":"T2173","obj":"T2172"},{"id":"R1845","pred":"det","subj":"T2174","obj":"T2177"},{"id":"R1846","pred":"nmod","subj":"T2175","obj":"T2177"},{"id":"R1847","pred":"amod","subj":"T2176","obj":"T2177"},{"id":"R1848","pred":"pobj","subj":"T2177","obj":"T2173"},{"id":"R1880","pred":"amod","subj":"T2179","obj":"T2180"},{"id":"R1884","pred":"pobj","subj":"T2180","obj":"T2178"},{"id":"R1885","pred":"prep","subj":"T2181","obj":"T2180"},{"id":"R1886","pred":"det","subj":"T2182","obj":"T2184"},{"id":"R1889","pred":"compound","subj":"T2183","obj":"T2184"},{"id":"R1891","pred":"pobj","subj":"T2184","obj":"T2181"},{"id":"R1895","pred":"compound","subj":"T2185","obj":"T2186"},{"id":"R1900","pred":"auxpass","subj":"T2188","obj":"T2189"},{"id":"R1903","pred":"advmod","subj":"T2191","obj":"T2194"},{"id":"R1904","pred":"punct","subj":"T2192","obj":"T2194"},{"id":"R1905","pred":"nsubj","subj":"T2193","obj":"T2194"},{"id":"R1906","pred":"ROOT","subj":"T2194","obj":"T2194"},{"id":"R1907","pred":"mark","subj":"T2195","obj":"T2199"},{"id":"R1908","pred":"compound","subj":"T2196","obj":"T2197"},{"id":"R1909","pred":"nsubj","subj":"T2197","obj":"T2199"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T1069","span":{"begin":29,"end":39},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T1072","span":{"begin":64,"end":74},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T1073","span":{"begin":29,"end":47},"obj":"http://purl.obolibrary.org/obo/GO_0007165"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T2216","span":{"begin":154,"end":159},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T2492","span":{"begin":64,"end":74},"obj":"Regulation"},{"id":"T2493","span":{"begin":64,"end":74},"obj":"Regulation"},{"id":"T2494","span":{"begin":95,"end":98},"obj":"Protein"},{"id":"T2495","span":{"begin":99,"end":102},"obj":"Protein"}],"relations":[{"id":"R2027","pred":"themeOf","subj":"T2494","obj":"T2492"},{"id":"R2028","pred":"themeOf","subj":"T2495","obj":"T2493"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2267","span":{"begin":6,"end":16},"obj":"Positive_regulation"},{"id":"T2268","span":{"begin":6,"end":16},"obj":"Positive_regulation"},{"id":"T2269","span":{"begin":24,"end":28},"obj":"Protein"},{"id":"T2270","span":{"begin":64,"end":74},"obj":"Regulation"},{"id":"T2271","span":{"begin":64,"end":74},"obj":"Regulation"},{"id":"T2272","span":{"begin":95,"end":98},"obj":"Protein"},{"id":"T2273","span":{"begin":99,"end":102},"obj":"Protein"}],"relations":[{"id":"R1786","pred":"themeOf","subj":"T2270","obj":"T2267"},{"id":"R1788","pred":"themeOf","subj":"T2271","obj":"T2268"},{"id":"R1790","pred":"themeOf","subj":"T2272","obj":"T2270"},{"id":"R1791","pred":"themeOf","subj":"T2273","obj":"T2271"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1106","span":{"begin":64,"end":74},"obj":"Regulation"},{"id":"T1109","span":{"begin":64,"end":74},"obj":"Regulation"},{"id":"T1137","span":{"begin":95,"end":98},"obj":"Protein"},{"id":"T1138","span":{"begin":99,"end":102},"obj":"Protein"}],"relations":[{"id":"R843","pred":"themeOf","subj":"T1137","obj":"T1106"},{"id":"R844","pred":"themeOf","subj":"T1138","obj":"T1109"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1706","span":{"begin":95,"end":98},"obj":"P41134"},{"id":"T1707","span":{"begin":99,"end":102},"obj":"P47928"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}
tees-test
{"project":"tees-test","denotations":[{"id":"T434","span":{"begin":29,"end":47},"obj":"GO:0007165"},{"id":"T435","span":{"begin":40,"end":47},"obj":"CHEBI:34922"},{"id":"T436","span":{"begin":64,"end":74},"obj":"GO:0065007"},{"id":"T437","span":{"begin":95,"end":98},"obj":"PR:P41134"},{"id":"T438","span":{"begin":95,"end":98},"obj":"PR:P20067"},{"id":"T439","span":{"begin":95,"end":98},"obj":"PR:P41135"},{"id":"T440","span":{"begin":95,"end":98},"obj":"PR:000000039"},{"id":"T441","span":{"begin":99,"end":102},"obj":"PR:P47928"},{"id":"T442","span":{"begin":99,"end":102},"obj":"PR:P41139"},{"id":"T443","span":{"begin":99,"end":102},"obj":"PR:000000042"}],"text":"duced activation of the Smad signalling pathway with subsequent regulation of the target genes Id1–Id4, were resolved. Finally, we investigated whether B cells also were capab"}