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PMC:1134658 / 28982-29257 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16481 0-13 NN denotes Determination
T16482 14-16 IN denotes of
T16483 17-21 NN denotes cell
T16484 22-27 NN denotes death
T16485 28-32 NN denotes Cell
T16486 33-38 NN denotes death
T16487 39-42 VB denotes was
T16488 43-51 VB denotes measured
T16489 52-54 IN denotes by
T16490 55-60 JJ denotes vital
T16491 61-64 NN denotes dye
T16492 65-74 NN denotes exclusion
T16493 75-79 NN denotes test
T16494 80-82 IN denotes by
T16495 83-91 VB denotes staining
T16496 92-97 NN denotes cells
T16497 98-102 IN denotes with
T16498 103-104 CD denotes 5
T16499 105-110 NN denotes μg/ml
T16500 111-120 NN denotes propidium
T16501 121-127 NN denotes iodide
T16502 128-129 -LRB- denotes (
T16503 129-130 -LRB- denotes [
T16504 130-132 NNP denotes PI
T16505 132-133 -RRB- denotes ]
T16506 133-134 -COLON- denotes ;
T16507 135-145 NNP denotes Calbiochem
T16508 146-151 NNP denotes Corp.
T16509 151-152 -COLON- denotes ;
T16510 153-155 NNP denotes La
T16511 156-161 NNP denotes Jolla
T16512 161-162 -COMMA- denotes ,
T16513 163-165 NNP denotes CA
T16514 165-166 -COLON- denotes ;
T16515 167-168 CD denotes 5
T16516 169-174 NN denotes mg/ml
T16517 174-175 -RRB- denotes )
T16518 176-179 IN denotes for
T16519 180-183 CD denotes one
T16520 184-190 NN denotes minute
T16521 191-193 IN denotes on
T16522 194-197 NN denotes ice
T16523 199-201 IN denotes At
T16524 202-207 JJ denotes least
T16525 208-213 CD denotes 1,000
T16526 214-219 NN denotes cells
T16527 220-223 IN denotes per
T16528 224-230 NN denotes sample
T16529 231-235 VB denotes were
T16530 236-239 VB denotes run
T16531 240-242 IN denotes on
T16532 243-244 DT denotes a
T16533 245-247 NN denotes BD
T16534 248-259 NN denotes FACSCalibur
T16535 260-264 NN denotes flow
T16536 265-274 NN denotes cytometer
R12745 T16481 T16482 arg1Of Determination,of
R12746 T16484 T16482 arg2Of death,of
R12747 T16484 T16483 arg1Of death,cell
R12748 T16486 T16485 arg1Of death,Cell
R12749 T16486 T16487 arg1Of death,was
R12750 T16486 T16488 arg2Of death,measured
R12751 T16486 T16495 arg1Of death,staining
R12752 T16488 T16487 arg2Of measured,was
R12753 T16488 T16494 arg1Of measured,by
R12754 T16488 T16518 arg1Of measured,for
R12755 T16493 T16488 arg1Of test,measured
R12756 T16493 T16489 arg2Of test,by
R12757 T16493 T16490 arg1Of test,vital
R12758 T16493 T16491 arg1Of test,dye
R12759 T16493 T16492 arg1Of test,exclusion
R12760 T16495 T16494 arg2Of staining,by
R12761 T16495 T16497 arg1Of staining,with
R12762 T16496 T16495 arg2Of cells,staining
R12763 T16501 T16497 arg2Of iodide,with
R12764 T16501 T16498 arg1Of iodide,5
R12765 T16501 T16499 arg1Of iodide,μg/ml
R12766 T16501 T16500 arg1Of iodide,propidium
R12767 T16501 T16502 arg1Of iodide,(
R12768 T16504 T16503 arg2Of PI,[
R12769 T16504 T16506 arg1Of PI,;
R12770 T16505 T16503 arg3Of ],[
R12771 T16506 T16509 arg1Of ;,;
R12772 T16508 T16506 arg2Of Corp.,;
R12773 T16508 T16507 arg1Of Corp.,Calbiochem
R12774 T16509 T16514 arg1Of ;,;
R12775 T16511 T16509 arg2Of Jolla,;
R12776 T16511 T16510 arg1Of Jolla,La
R12777 T16511 T16512 arg1Of Jolla,","
R12778 T16513 T16512 arg2Of CA,","
R12779 T16514 T16502 arg2Of ;,(
R12780 T16516 T16514 arg2Of mg/ml,;
R12781 T16516 T16515 arg1Of mg/ml,5
R12782 T16517 T16502 arg3Of ),(
R12783 T16520 T16518 arg2Of minute,for
R12784 T16520 T16519 arg1Of minute,one
R12785 T16520 T16521 arg1Of minute,on
R12786 T16522 T16521 arg2Of ice,on
R12787 T16525 T16523 arg1Of "1,000",At
R12788 T16525 T16524 arg1Of "1,000",least
R12789 T16526 T16525 arg1Of cells,"1,000"
R12790 T16526 T16527 arg1Of cells,per
R12791 T16526 T16529 arg1Of cells,were
R12792 T16526 T16530 arg2Of cells,run
R12793 T16528 T16527 arg2Of sample,per
R12794 T16530 T16529 arg2Of run,were
R12795 T16530 T16531 arg1Of run,on
R12796 T16536 T16531 arg2Of cytometer,on
R12797 T16536 T16532 arg1Of cytometer,a
R12798 T16536 T16533 arg1Of cytometer,BD
R12799 T16536 T16534 arg1Of cytometer,FACSCalibur
R12800 T16536 T16535 arg1Of cytometer,flow

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16540 0-13 NN denotes Determination
T16541 14-16 IN denotes of
T16542 17-21 NN denotes cell
T16543 22-27 NN denotes death
T16544 28-32 NNP denotes Cell
T16545 33-38 NN denotes death
T16546 39-42 VBD denotes was
T16547 43-51 VBN denotes measured
T16548 52-54 IN denotes by
T16549 55-60 JJ denotes vital
T16550 61-64 NN denotes dye
T16551 65-74 NN denotes exclusion
T16552 75-79 NN denotes test
T16553 80-82 IN denotes by
T16554 83-91 VBG denotes staining
T16555 92-97 NNS denotes cells
T16556 98-102 IN denotes with
T16557 103-104 CD denotes 5
T16558 105-107 NN denotes μg
T16559 107-108 NN denotes /
T16560 108-110 NN denotes ml
T16561 111-120 NN denotes propidium
T16562 121-127 NN denotes iodide
T16563 128-129 -LRB- denotes (
T16564 129-130 NNP denotes [
T16565 130-132 NNP denotes PI
T16566 132-133 NNP denotes ]
T16567 133-134 : denotes ;
T16568 135-145 NNP denotes Calbiochem
T16569 146-151 NNP denotes Corp.
T16570 151-152 : denotes ;
T16571 153-155 NNP denotes La
T16572 156-161 NNP denotes Jolla
T16573 161-162 , denotes ,
T16574 163-165 NNP denotes CA
T16575 165-166 : denotes ;
T16576 167-168 CD denotes 5
T16577 169-174 NN denotes mg/ml
T16578 174-175 -RRB- denotes )
T16579 176-179 IN denotes for
T16580 180-183 CD denotes one
T16581 184-190 NN denotes minute
T16582 191-193 IN denotes on
T16583 194-197 NN denotes ice
T16584 197-198 . denotes .
T16585 199-201 IN denotes At
T16586 202-207 JJS denotes least
T16587 208-213 CD denotes 1,000
T16588 214-219 NNS denotes cells
T16589 220-223 IN denotes per
T16590 224-230 NN denotes sample
T16591 231-235 VBD denotes were
T16592 236-239 VBN denotes run
T16593 240-242 IN denotes on
T16594 243-244 DT denotes a
T16595 245-247 NNP denotes BD
T16596 248-259 NNP denotes FACSCalibur
T16597 260-264 NN denotes flow
T16598 265-274 NN denotes cytometer
T16599 274-275 . denotes .
R12801 T16540 T16547 nsubjpass Determination,measured
R12802 T16541 T16540 prep of,Determination
R12803 T16542 T16543 compound cell,death
R12804 T16543 T16545 compound death,death
R12805 T16544 T16545 compound Cell,death
R12806 T16545 T16541 pobj death,of
R12807 T16546 T16547 auxpass was,measured
R12808 T16547 T16547 ROOT measured,measured
R12809 T16548 T16547 agent by,measured
R12810 T16549 T16552 amod vital,test
R12811 T16550 T16551 compound dye,exclusion
R12812 T16551 T16552 compound exclusion,test
R12813 T16552 T16548 pobj test,by
R12814 T16553 T16547 prep by,measured
R12815 T16554 T16553 pcomp staining,by
R12816 T16555 T16554 dobj cells,staining
R12817 T16556 T16554 prep with,staining
R12818 T16557 T16558 nummod 5,μg
R12819 T16558 T16562 nmod μg,iodide
R12820 T16559 T16562 nmod /,iodide
R12821 T16560 T16562 nmod ml,iodide
R12822 T16561 T16562 compound propidium,iodide
R12823 T16562 T16556 pobj iodide,with
R12824 T16563 T16562 punct (,iodide
R12825 T16564 T16566 compound [,]
R12826 T16565 T16566 compound PI,]
R12827 T16566 T16562 appos ],iodide
R12828 T16567 T16562 punct ;,iodide
R12829 T16568 T16569 compound Calbiochem,Corp.
R12830 T16569 T16562 conj Corp.,iodide
R12831 T16570 T16569 punct ;,Corp.
R12832 T16571 T16572 compound La,Jolla
R12833 T16572 T16569 npadvmod Jolla,Corp.
R12834 T16573 T16572 punct ",",Jolla
R12835 T16574 T16572 conj CA,Jolla
R12836 T16575 T16572 punct ;,Jolla
R12837 T16576 T16577 nummod 5,mg/ml
R12838 T16577 T16569 appos mg/ml,Corp.
R12839 T16578 T16569 punct ),Corp.
R12840 T16579 T16554 prep for,staining
R12841 T16580 T16581 nummod one,minute
R12842 T16581 T16579 pobj minute,for
R12843 T16582 T16581 prep on,minute
R12844 T16583 T16582 pobj ice,on
R12845 T16584 T16547 punct .,measured
R12846 T16585 T16586 advmod At,least
R12847 T16586 T16587 advmod least,"1,000"
R12848 T16587 T16588 nummod "1,000",cells
R12849 T16588 T16592 nsubjpass cells,run
R12850 T16589 T16588 prep per,cells
R12851 T16590 T16589 pobj sample,per
R12852 T16591 T16592 auxpass were,run
R12853 T16592 T16592 ROOT run,run
R12854 T16593 T16592 prep on,run
R12855 T16594 T16597 det a,flow
R12856 T16595 T16597 compound BD,flow
R12857 T16596 T16597 compound FACSCalibur,flow
R12858 T16597 T16593 pobj flow,on
R12859 T16598 T16592 npadvmod cytometer,run
R12860 T16599 T16592 punct .,run

GO-BP

Id Subject Object Predicate Lexical cue
T16476 17-27 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T16477 28-38 http://purl.obolibrary.org/obo/GO_0008219 denotes Cell death
T16478 22-27 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T16479 33-38 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T16480 163-165 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

GO-MF

Id Subject Object Predicate Lexical cue
T16600 163-165 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

GO-CC

Id Subject Object Predicate Lexical cue
T16601 17-21 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T16602 28-32 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T16603 92-97 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T16604 214-219 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T16473 0-27 Sentence denotes Determination of cell death
T16474 28-198 Sentence denotes Cell death was measured by vital dye exclusion test by staining cells with 5 μg/ml propidium iodide ([PI]; Calbiochem Corp.; La Jolla, CA; 5 mg/ml) for one minute on ice.
T16475 199-275 Sentence denotes At least 1,000 cells per sample were run on a BD FACSCalibur flow cytometer.
T219 0-27 Sentence denotes Determination of cell death
T220 28-198 Sentence denotes Cell death was measured by vital dye exclusion test by staining cells with 5 μg/ml propidium iodide ([PI]; Calbiochem Corp.; La Jolla, CA; 5 mg/ml) for one minute on ice.
T221 199-275 Sentence denotes At least 1,000 cells per sample were run on a BD FACSCalibur flow cytometer.

tees-test

Id Subject Object Predicate Lexical cue
T3308 17-27 GO:0008219 denotes cell death
T3309 28-38 GO:0008219 denotes Cell death
T3310 61-64 PR:Q7ZU29 denotes dye
T3311 61-64 PR:P0A9Q1 denotes dye
T3312 61-64 PR:000022123 denotes dye
T3313 61-64 CHEBI:37958 denotes dye
T3314 111-127 D011419 denotes propidium iodide
T3315 111-127 D011419 denotes propidium iodide
T3316 111-127 CHEBI:51240 denotes propidium iodide
T3317 163-168 PR:000004921 denotes CA; 5
T3318 163-168 PR:P43165 denotes CA; 5
T3319 163-168 PR:P23589 denotes CA; 5
T3320 163-168 PR:P35218 denotes CA; 5