PMC:1134658 / 28982-29257
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16481 | 0-13 | NN | denotes | Determination |
T16482 | 14-16 | IN | denotes | of |
T16483 | 17-21 | NN | denotes | cell |
T16484 | 22-27 | NN | denotes | death |
T16485 | 28-32 | NN | denotes | Cell |
T16486 | 33-38 | NN | denotes | death |
T16487 | 39-42 | VB | denotes | was |
T16488 | 43-51 | VB | denotes | measured |
T16489 | 52-54 | IN | denotes | by |
T16490 | 55-60 | JJ | denotes | vital |
T16491 | 61-64 | NN | denotes | dye |
T16492 | 65-74 | NN | denotes | exclusion |
T16493 | 75-79 | NN | denotes | test |
T16494 | 80-82 | IN | denotes | by |
T16495 | 83-91 | VB | denotes | staining |
T16496 | 92-97 | NN | denotes | cells |
T16497 | 98-102 | IN | denotes | with |
T16498 | 103-104 | CD | denotes | 5 |
T16499 | 105-110 | NN | denotes | μg/ml |
T16500 | 111-120 | NN | denotes | propidium |
T16501 | 121-127 | NN | denotes | iodide |
T16502 | 128-129 | -LRB- | denotes | ( |
T16503 | 129-130 | -LRB- | denotes | [ |
T16504 | 130-132 | NNP | denotes | PI |
T16505 | 132-133 | -RRB- | denotes | ] |
T16506 | 133-134 | -COLON- | denotes | ; |
T16507 | 135-145 | NNP | denotes | Calbiochem |
T16508 | 146-151 | NNP | denotes | Corp. |
T16509 | 151-152 | -COLON- | denotes | ; |
T16510 | 153-155 | NNP | denotes | La |
T16511 | 156-161 | NNP | denotes | Jolla |
T16512 | 161-162 | -COMMA- | denotes | , |
T16513 | 163-165 | NNP | denotes | CA |
T16514 | 165-166 | -COLON- | denotes | ; |
T16515 | 167-168 | CD | denotes | 5 |
T16516 | 169-174 | NN | denotes | mg/ml |
T16517 | 174-175 | -RRB- | denotes | ) |
T16518 | 176-179 | IN | denotes | for |
T16519 | 180-183 | CD | denotes | one |
T16520 | 184-190 | NN | denotes | minute |
T16521 | 191-193 | IN | denotes | on |
T16522 | 194-197 | NN | denotes | ice |
T16523 | 199-201 | IN | denotes | At |
T16524 | 202-207 | JJ | denotes | least |
T16525 | 208-213 | CD | denotes | 1,000 |
T16526 | 214-219 | NN | denotes | cells |
T16527 | 220-223 | IN | denotes | per |
T16528 | 224-230 | NN | denotes | sample |
T16529 | 231-235 | VB | denotes | were |
T16530 | 236-239 | VB | denotes | run |
T16531 | 240-242 | IN | denotes | on |
T16532 | 243-244 | DT | denotes | a |
T16533 | 245-247 | NN | denotes | BD |
T16534 | 248-259 | NN | denotes | FACSCalibur |
T16535 | 260-264 | NN | denotes | flow |
T16536 | 265-274 | NN | denotes | cytometer |
R12745 | T16481 | T16482 | arg1Of | Determination,of |
R12746 | T16484 | T16482 | arg2Of | death,of |
R12747 | T16484 | T16483 | arg1Of | death,cell |
R12748 | T16486 | T16485 | arg1Of | death,Cell |
R12749 | T16486 | T16487 | arg1Of | death,was |
R12750 | T16486 | T16488 | arg2Of | death,measured |
R12751 | T16486 | T16495 | arg1Of | death,staining |
R12752 | T16488 | T16487 | arg2Of | measured,was |
R12753 | T16488 | T16494 | arg1Of | measured,by |
R12754 | T16488 | T16518 | arg1Of | measured,for |
R12755 | T16493 | T16488 | arg1Of | test,measured |
R12756 | T16493 | T16489 | arg2Of | test,by |
R12757 | T16493 | T16490 | arg1Of | test,vital |
R12758 | T16493 | T16491 | arg1Of | test,dye |
R12759 | T16493 | T16492 | arg1Of | test,exclusion |
R12760 | T16495 | T16494 | arg2Of | staining,by |
R12761 | T16495 | T16497 | arg1Of | staining,with |
R12762 | T16496 | T16495 | arg2Of | cells,staining |
R12763 | T16501 | T16497 | arg2Of | iodide,with |
R12764 | T16501 | T16498 | arg1Of | iodide,5 |
R12765 | T16501 | T16499 | arg1Of | iodide,μg/ml |
R12766 | T16501 | T16500 | arg1Of | iodide,propidium |
R12767 | T16501 | T16502 | arg1Of | iodide,( |
R12768 | T16504 | T16503 | arg2Of | PI,[ |
R12769 | T16504 | T16506 | arg1Of | PI,; |
R12770 | T16505 | T16503 | arg3Of | ],[ |
R12771 | T16506 | T16509 | arg1Of | ;,; |
R12772 | T16508 | T16506 | arg2Of | Corp.,; |
R12773 | T16508 | T16507 | arg1Of | Corp.,Calbiochem |
R12774 | T16509 | T16514 | arg1Of | ;,; |
R12775 | T16511 | T16509 | arg2Of | Jolla,; |
R12776 | T16511 | T16510 | arg1Of | Jolla,La |
R12777 | T16511 | T16512 | arg1Of | Jolla,"," |
R12778 | T16513 | T16512 | arg2Of | CA,"," |
R12779 | T16514 | T16502 | arg2Of | ;,( |
R12780 | T16516 | T16514 | arg2Of | mg/ml,; |
R12781 | T16516 | T16515 | arg1Of | mg/ml,5 |
R12782 | T16517 | T16502 | arg3Of | ),( |
R12783 | T16520 | T16518 | arg2Of | minute,for |
R12784 | T16520 | T16519 | arg1Of | minute,one |
R12785 | T16520 | T16521 | arg1Of | minute,on |
R12786 | T16522 | T16521 | arg2Of | ice,on |
R12787 | T16525 | T16523 | arg1Of | "1,000",At |
R12788 | T16525 | T16524 | arg1Of | "1,000",least |
R12789 | T16526 | T16525 | arg1Of | cells,"1,000" |
R12790 | T16526 | T16527 | arg1Of | cells,per |
R12791 | T16526 | T16529 | arg1Of | cells,were |
R12792 | T16526 | T16530 | arg2Of | cells,run |
R12793 | T16528 | T16527 | arg2Of | sample,per |
R12794 | T16530 | T16529 | arg2Of | run,were |
R12795 | T16530 | T16531 | arg1Of | run,on |
R12796 | T16536 | T16531 | arg2Of | cytometer,on |
R12797 | T16536 | T16532 | arg1Of | cytometer,a |
R12798 | T16536 | T16533 | arg1Of | cytometer,BD |
R12799 | T16536 | T16534 | arg1Of | cytometer,FACSCalibur |
R12800 | T16536 | T16535 | arg1Of | cytometer,flow |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16540 | 0-13 | NN | denotes | Determination |
T16541 | 14-16 | IN | denotes | of |
T16542 | 17-21 | NN | denotes | cell |
T16543 | 22-27 | NN | denotes | death |
T16544 | 28-32 | NNP | denotes | Cell |
T16545 | 33-38 | NN | denotes | death |
T16546 | 39-42 | VBD | denotes | was |
T16547 | 43-51 | VBN | denotes | measured |
T16548 | 52-54 | IN | denotes | by |
T16549 | 55-60 | JJ | denotes | vital |
T16550 | 61-64 | NN | denotes | dye |
T16551 | 65-74 | NN | denotes | exclusion |
T16552 | 75-79 | NN | denotes | test |
T16553 | 80-82 | IN | denotes | by |
T16554 | 83-91 | VBG | denotes | staining |
T16555 | 92-97 | NNS | denotes | cells |
T16556 | 98-102 | IN | denotes | with |
T16557 | 103-104 | CD | denotes | 5 |
T16558 | 105-107 | NN | denotes | μg |
T16559 | 107-108 | NN | denotes | / |
T16560 | 108-110 | NN | denotes | ml |
T16561 | 111-120 | NN | denotes | propidium |
T16562 | 121-127 | NN | denotes | iodide |
T16563 | 128-129 | -LRB- | denotes | ( |
T16564 | 129-130 | NNP | denotes | [ |
T16565 | 130-132 | NNP | denotes | PI |
T16566 | 132-133 | NNP | denotes | ] |
T16567 | 133-134 | : | denotes | ; |
T16568 | 135-145 | NNP | denotes | Calbiochem |
T16569 | 146-151 | NNP | denotes | Corp. |
T16570 | 151-152 | : | denotes | ; |
T16571 | 153-155 | NNP | denotes | La |
T16572 | 156-161 | NNP | denotes | Jolla |
T16573 | 161-162 | , | denotes | , |
T16574 | 163-165 | NNP | denotes | CA |
T16575 | 165-166 | : | denotes | ; |
T16576 | 167-168 | CD | denotes | 5 |
T16577 | 169-174 | NN | denotes | mg/ml |
T16578 | 174-175 | -RRB- | denotes | ) |
T16579 | 176-179 | IN | denotes | for |
T16580 | 180-183 | CD | denotes | one |
T16581 | 184-190 | NN | denotes | minute |
T16582 | 191-193 | IN | denotes | on |
T16583 | 194-197 | NN | denotes | ice |
T16584 | 197-198 | . | denotes | . |
T16585 | 199-201 | IN | denotes | At |
T16586 | 202-207 | JJS | denotes | least |
T16587 | 208-213 | CD | denotes | 1,000 |
T16588 | 214-219 | NNS | denotes | cells |
T16589 | 220-223 | IN | denotes | per |
T16590 | 224-230 | NN | denotes | sample |
T16591 | 231-235 | VBD | denotes | were |
T16592 | 236-239 | VBN | denotes | run |
T16593 | 240-242 | IN | denotes | on |
T16594 | 243-244 | DT | denotes | a |
T16595 | 245-247 | NNP | denotes | BD |
T16596 | 248-259 | NNP | denotes | FACSCalibur |
T16597 | 260-264 | NN | denotes | flow |
T16598 | 265-274 | NN | denotes | cytometer |
T16599 | 274-275 | . | denotes | . |
R12801 | T16540 | T16547 | nsubjpass | Determination,measured |
R12802 | T16541 | T16540 | prep | of,Determination |
R12803 | T16542 | T16543 | compound | cell,death |
R12804 | T16543 | T16545 | compound | death,death |
R12805 | T16544 | T16545 | compound | Cell,death |
R12806 | T16545 | T16541 | pobj | death,of |
R12807 | T16546 | T16547 | auxpass | was,measured |
R12808 | T16547 | T16547 | ROOT | measured,measured |
R12809 | T16548 | T16547 | agent | by,measured |
R12810 | T16549 | T16552 | amod | vital,test |
R12811 | T16550 | T16551 | compound | dye,exclusion |
R12812 | T16551 | T16552 | compound | exclusion,test |
R12813 | T16552 | T16548 | pobj | test,by |
R12814 | T16553 | T16547 | prep | by,measured |
R12815 | T16554 | T16553 | pcomp | staining,by |
R12816 | T16555 | T16554 | dobj | cells,staining |
R12817 | T16556 | T16554 | prep | with,staining |
R12818 | T16557 | T16558 | nummod | 5,μg |
R12819 | T16558 | T16562 | nmod | μg,iodide |
R12820 | T16559 | T16562 | nmod | /,iodide |
R12821 | T16560 | T16562 | nmod | ml,iodide |
R12822 | T16561 | T16562 | compound | propidium,iodide |
R12823 | T16562 | T16556 | pobj | iodide,with |
R12824 | T16563 | T16562 | punct | (,iodide |
R12825 | T16564 | T16566 | compound | [,] |
R12826 | T16565 | T16566 | compound | PI,] |
R12827 | T16566 | T16562 | appos | ],iodide |
R12828 | T16567 | T16562 | punct | ;,iodide |
R12829 | T16568 | T16569 | compound | Calbiochem,Corp. |
R12830 | T16569 | T16562 | conj | Corp.,iodide |
R12831 | T16570 | T16569 | punct | ;,Corp. |
R12832 | T16571 | T16572 | compound | La,Jolla |
R12833 | T16572 | T16569 | npadvmod | Jolla,Corp. |
R12834 | T16573 | T16572 | punct | ",",Jolla |
R12835 | T16574 | T16572 | conj | CA,Jolla |
R12836 | T16575 | T16572 | punct | ;,Jolla |
R12837 | T16576 | T16577 | nummod | 5,mg/ml |
R12838 | T16577 | T16569 | appos | mg/ml,Corp. |
R12839 | T16578 | T16569 | punct | ),Corp. |
R12840 | T16579 | T16554 | prep | for,staining |
R12841 | T16580 | T16581 | nummod | one,minute |
R12842 | T16581 | T16579 | pobj | minute,for |
R12843 | T16582 | T16581 | prep | on,minute |
R12844 | T16583 | T16582 | pobj | ice,on |
R12845 | T16584 | T16547 | punct | .,measured |
R12846 | T16585 | T16586 | advmod | At,least |
R12847 | T16586 | T16587 | advmod | least,"1,000" |
R12848 | T16587 | T16588 | nummod | "1,000",cells |
R12849 | T16588 | T16592 | nsubjpass | cells,run |
R12850 | T16589 | T16588 | prep | per,cells |
R12851 | T16590 | T16589 | pobj | sample,per |
R12852 | T16591 | T16592 | auxpass | were,run |
R12853 | T16592 | T16592 | ROOT | run,run |
R12854 | T16593 | T16592 | prep | on,run |
R12855 | T16594 | T16597 | det | a,flow |
R12856 | T16595 | T16597 | compound | BD,flow |
R12857 | T16596 | T16597 | compound | FACSCalibur,flow |
R12858 | T16597 | T16593 | pobj | flow,on |
R12859 | T16598 | T16592 | npadvmod | cytometer,run |
R12860 | T16599 | T16592 | punct | .,run |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16476 | 17-27 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | cell death |
T16477 | 28-38 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | Cell death |
T16478 | 22-27 | http://purl.obolibrary.org/obo/GO_0016265 | denotes | death |
T16479 | 33-38 | http://purl.obolibrary.org/obo/GO_0016265 | denotes | death |
T16480 | 163-165 | http://purl.obolibrary.org/obo/GO_0033968 | denotes | CA |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16600 | 163-165 | http://purl.obolibrary.org/obo/GO_0033968 | denotes | CA |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16601 | 17-21 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T16602 | 28-32 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
T16603 | 92-97 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T16604 | 214-219 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16473 | 0-27 | Sentence | denotes | Determination of cell death |
T16474 | 28-198 | Sentence | denotes | Cell death was measured by vital dye exclusion test by staining cells with 5 μg/ml propidium iodide ([PI]; Calbiochem Corp.; La Jolla, CA; 5 mg/ml) for one minute on ice. |
T16475 | 199-275 | Sentence | denotes | At least 1,000 cells per sample were run on a BD FACSCalibur flow cytometer. |
T219 | 0-27 | Sentence | denotes | Determination of cell death |
T220 | 28-198 | Sentence | denotes | Cell death was measured by vital dye exclusion test by staining cells with 5 μg/ml propidium iodide ([PI]; Calbiochem Corp.; La Jolla, CA; 5 mg/ml) for one minute on ice. |
T221 | 199-275 | Sentence | denotes | At least 1,000 cells per sample were run on a BD FACSCalibur flow cytometer. |
tees-test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3308 | 17-27 | GO:0008219 | denotes | cell death |
T3309 | 28-38 | GO:0008219 | denotes | Cell death |
T3310 | 61-64 | PR:Q7ZU29 | denotes | dye |
T3311 | 61-64 | PR:P0A9Q1 | denotes | dye |
T3312 | 61-64 | PR:000022123 | denotes | dye |
T3313 | 61-64 | CHEBI:37958 | denotes | dye |
T3314 | 111-127 | D011419 | denotes | propidium iodide |
T3315 | 111-127 | D011419 | denotes | propidium iodide |
T3316 | 111-127 | CHEBI:51240 | denotes | propidium iodide |
T3317 | 163-168 | PR:000004921 | denotes | CA; 5 |
T3318 | 163-168 | PR:P43165 | denotes | CA; 5 |
T3319 | 163-168 | PR:P23589 | denotes | CA; 5 |
T3320 | 163-168 | PR:P35218 | denotes | CA; 5 |