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PMC:1134658 / 2888-3144 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1407 0-5 NN denotes BMP-6
T1408 5-6 -COMMA- denotes ,
T1409 7-11 IN denotes like
T1410 12-15 DT denotes the
T1411 16-21 JJ denotes other
T1412 22-25 NN denotes BMP
T1413 26-33 NN denotes members
T1414 33-34 -COMMA- denotes ,
T1415 35-42 NN denotes signals
T1416 43-50 IN denotes through
T1417 51-59 NN denotes ligation
T1418 60-63 CC denotes and
T1419 64-81 NN denotes heterodimerzation
T1420 82-84 IN denotes of
T1421 85-88 NN denotes BMP
T1422 89-93 NN denotes type
T1423 94-95 CD denotes I
T1424 96-97 -LRB- denotes [
T1425 97-116 NN denotes activin-like-kinase
T1426 117-118 -LRB- denotes (
T1427 118-121 NN denotes ALK
T1428 121-122 -RRB- denotes )
T1429 122-123 -RRB- denotes ]
T1430 124-127 CC denotes and
T1431 128-132 NN denotes type
T1432 133-135 CD denotes II
T1433 136-152 NN denotes serine-threonine
T1434 153-159 NN denotes kinase
T1435 160-169 NN denotes receptors
T1436 169-170 -COMMA- denotes ,
T1437 171-176 WDT denotes which
T1438 177-189 RB denotes subsequently
T1439 190-200 VB denotes propagates
T1440 201-204 DT denotes the
T1441 205-211 NN denotes signal
T1442 212-222 RB denotes downstream
T1443 223-225 IN denotes by
T1444 226-241 VB denotes phosphorylating
T1445 242-246 NN denotes Smad
T1446 247-255 NN denotes proteins
R1118 T1407 T1408 arg1Of BMP-6,","
R1119 T1407 T1409 arg1Of BMP-6,like
R1120 T1407 T1414 arg1Of BMP-6,","
R1121 T1413 T1409 arg2Of members,like
R1122 T1413 T1410 arg1Of members,the
R1123 T1413 T1411 arg1Of members,other
R1124 T1413 T1412 arg1Of members,BMP
R1125 T1414 T1416 arg1Of ",",through
R1126 T1414 T1424 arg1Of ",",[
R1127 T1414 T1430 arg1Of ",",and
R1128 T1415 T1414 arg2Of signals,","
R1129 T1417 T1418 arg1Of ligation,and
R1130 T1418 T1416 arg2Of and,through
R1131 T1418 T1420 arg1Of and,of
R1132 T1419 T1418 arg2Of heterodimerzation,and
R1133 T1422 T1420 arg2Of type,of
R1134 T1422 T1421 arg1Of type,BMP
R1135 T1422 T1423 arg1Of type,I
R1136 T1425 T1424 arg2Of activin-like-kinase,[
R1137 T1425 T1426 arg1Of activin-like-kinase,(
R1138 T1427 T1426 arg2Of ALK,(
R1139 T1428 T1426 arg3Of ),(
R1140 T1429 T1424 arg3Of ],[
R1141 T1430 T1436 arg1Of and,","
R1142 T1430 T1437 arg1Of and,which
R1143 T1430 T1439 arg1Of and,propagates
R1144 T1435 T1430 arg2Of receptors,and
R1145 T1435 T1431 arg1Of receptors,type
R1146 T1435 T1432 arg1Of receptors,II
R1147 T1435 T1433 arg1Of receptors,serine-threonine
R1148 T1435 T1434 arg1Of receptors,kinase
R1149 T1439 T1438 arg1Of propagates,subsequently
R1150 T1439 T1442 arg1Of propagates,downstream
R1151 T1439 T1443 arg1Of propagates,by
R1152 T1441 T1439 arg2Of signal,propagates
R1153 T1441 T1440 arg1Of signal,the
R1154 T1444 T1443 arg2Of phosphorylating,by
R1155 T1446 T1444 arg2Of proteins,phosphorylating
R1156 T1446 T1445 arg1Of proteins,Smad

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2003 0-5 NN denotes BMP-6
T2004 5-6 , denotes ,
T2005 7-11 IN denotes like
T2006 12-15 DT denotes the
T2007 16-21 JJ denotes other
T2008 22-25 NN denotes BMP
T2009 26-33 NNS denotes members
T2010 33-34 , denotes ,
T2011 35-42 NNS denotes signals
T2012 43-50 IN denotes through
T2013 51-59 NN denotes ligation
T2014 60-63 CC denotes and
T2015 64-81 NN denotes heterodimerzation
T2016 82-84 IN denotes of
T2017 85-88 NN denotes BMP
T2018 89-93 NN denotes type
T2019 94-95 PRP denotes I
T2020 96-97 VBP denotes [
T2021 97-116 NN denotes activin-like-kinase
T2022 117-118 -LRB- denotes (
T2023 118-121 NNP denotes ALK
T2024 121-122 -RRB- denotes )
T2025 122-123 NNP denotes ]
T2026 124-127 CC denotes and
T2027 128-132 NN denotes type
T2028 133-135 NNP denotes II
T2029 136-152 JJ denotes serine-threonine
T2030 153-159 NN denotes kinase
T2031 160-169 NNS denotes receptors
T2032 169-170 , denotes ,
T2033 171-176 WDT denotes which
T2034 177-189 RB denotes subsequently
T2035 190-200 VBZ denotes propagates
T2036 201-204 DT denotes the
T2037 205-211 NN denotes signal
T2038 212-222 JJ denotes downstream
T2039 223-225 IN denotes by
T2040 226-241 VBG denotes phosphorylating
T2041 242-246 NNP denotes Smad
T2042 247-255 NNS denotes proteins
T2043 255-256 . denotes .
R1558 T2004 T2003 punct ",",BMP-6
R1560 T2005 T2003 prep like,BMP-6
R1561 T2006 T2009 det the,members
R1563 T2007 T2009 amod other,members
R1564 T2008 T2009 compound BMP,members
R1566 T2009 T2005 pobj members,like
R1567 T2010 T2009 punct ",",members
R1568 T2011 T2011 ROOT signals,signals
R1569 T2012 T2011 prep through,signals
R1570 T2013 T2012 pobj ligation,through
R1571 T2014 T2013 cc and,ligation
R1573 T2015 T2013 conj heterodimerzation,ligation
R1574 T2016 T2015 prep of,heterodimerzation
R1575 T2017 T2018 compound BMP,type
R1577 T2018 T2016 pobj type,of
R1578 T2019 T2020 nsubj I,[
R1579 T2020 T2011 advcl [,signals
R1581 T2021 T2020 acomp activin-like-kinase,[
R1582 T2022 T2021 punct (,activin-like-kinase
R1583 T2023 T2021 appos ALK,activin-like-kinase
R1585 T2024 T2023 punct ),ALK
R1586 T2025 T2021 conj ],activin-like-kinase
R1587 T2026 T2025 cc and,]
R1588 T2027 T2031 nmod type,receptors
R1590 T2028 T2031 nmod II,receptors
R1591 T2029 T2031 amod serine-threonine,receptors
R1593 T2030 T2031 compound kinase,receptors
R1594 T2031 T2025 conj receptors,]
R1595 T2032 T2031 punct ",",receptors
R1597 T2033 T2035 nsubj which,propagates
R1598 T2034 T2035 advmod subsequently,propagates
R1599 T2035 T2031 relcl propagates,receptors
R1600 T2036 T2037 det the,signal
R1602 T2037 T2035 dobj signal,propagates
R1603 T2038 T2037 amod downstream,signal
R1604 T2039 T2035 prep by,propagates
R1605 T2040 T2039 pcomp phosphorylating,by
R1607 T2041 T2042 compound Smad,proteins
R1608 T2042 T2040 dobj proteins,phosphorylating
R1609 T2043 T2020 punct .,[
R1684 T2003 T2011 nsubj BMP-6,signals

GO-BP

Id Subject Object Predicate Lexical cue
T1066 35-42 http://purl.obolibrary.org/obo/GO_0023052 denotes signals
T1067 205-211 http://purl.obolibrary.org/obo/GO_0023052 denotes signal

sentences

Id Subject Object Predicate Lexical cue
T1044 0-256 Sentence denotes BMP-6, like the other BMP members, signals through ligation and heterodimerzation of BMP type I [activin-like-kinase (ALK)] and type II serine-threonine kinase receptors, which subsequently propagates the signal downstream by phosphorylating Smad proteins.
T27 0-256 Sentence denotes BMP-6, like the other BMP members, signals through ligation and heterodimerzation of BMP type I [activin-like-kinase (ALK)] and type II serine-threonine kinase receptors, which subsequently propagates the signal downstream by phosphorylating Smad proteins.

events-check-again

Id Subject Object Predicate Lexical cue
T2438 0-5 Protein denotes BMP-6
T2439 51-59 Binding denotes ligation
T2440 64-81 Binding denotes heterodimerzation
R1944 T2438 T2439 themeOf BMP-6,ligation
R1945 T2438 T2440 themeOf BMP-6,heterodimerzation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2224 51-59 Binding denotes ligation
T2225 51-59 Binding denotes ligation
T2226 51-59 Binding denotes ligation
T2227 64-81 Binding denotes heterodimerzation
T2228 64-81 Binding denotes heterodimerzation
T2229 96-116 Protein denotes [activin-like-kinase
T2230 118-121 Protein denotes ALK
T2231 128-169 Protein denotes type II serine-threonine kinase receptors
T2232 226-241 Phosphorylation denotes phosphorylating
T2233 242-255 Protein denotes Smad proteins
R1733 T2230 T2224 themeOf ALK,ligation
R1735 T2230 T2226 themeOf ALK,ligation
R1736 T2230 T2227 themeOf ALK,heterodimerzation
R1737 T2231 T2225 themeOf type II serine-threonine kinase receptors,ligation
R1738 T2231 T2226 themeOf type II serine-threonine kinase receptors,ligation
R1739 T2231 T2228 themeOf type II serine-threonine kinase receptors,heterodimerzation
R1740 T2233 T2232 themeOf Smad proteins,phosphorylating

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1085 51-59 Binding denotes ligation
T1096 64-81 Binding denotes heterodimerzation
T1121 0-5 Protein denotes BMP-6
R816 T1121 T1085 themeOf BMP-6,ligation
R817 T1121 T1096 themeOf BMP-6,heterodimerzation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1647 0-3 P22004 denotes BMP
T1648 0-3 P12644 denotes BMP
T1649 0-3 P12643 denotes BMP
T1650 0-3 P18075 denotes BMP
T1651 0-5 P22004 denotes BMP-6
T1652 22-25 P12643 denotes BMP
T1653 22-25 P22004 denotes BMP
T1654 22-25 P18075 denotes BMP
T1655 22-25 P12644 denotes BMP
T1656 85-88 P18075 denotes BMP
T1657 85-88 P22004 denotes BMP
T1658 85-88 P12643 denotes BMP
T1659 85-88 P12644 denotes BMP

tees-test

Id Subject Object Predicate Lexical cue
T301 0-5 D055418 denotes BMP-6
T302 0-5 D055418 denotes BMP-6
T303 0-5 Q04906 denotes BMP-6
T304 0-5 PR:000000167 denotes BMP-6
T305 0-5 P20722 denotes BMP-6
T306 0-5 PR:Q04906 denotes BMP-6
T307 0-5 P22004 denotes BMP-6
T308 0-5 PR:P22004 denotes BMP-6
T309 0-5 PR:P20722 denotes BMP-6
T310 22-25 CHEBI:60815 denotes BMP
T311 22-25 PR:000000034 denotes BMP
T312 22-25 P35855 denotes BMP
T313 85-88 CHEBI:60815 denotes BMP
T314 85-88 PR:000000034 denotes BMP
T315 85-88 P35855 denotes BMP
T316 97-104 D028341 denotes activin
T317 97-104 GO:0016915 denotes activin
T318 97-104 GO:0005160 denotes activin
T319 118-121 PR:P97793 denotes ALK
T320 118-121 PR:000001282 denotes ALK
T321 118-121 PR:Q9UM73 denotes ALK
T322 136-142 9671 denotes serine
T323 136-142 SO:0001444 denotes serine
T324 136-159 D017346 denotes serine-threonine kinase
T325 143-152 10524 denotes threonine
T326 143-152 SO:0001445 denotes threonine
T327 205-211 SO:0000725 denotes signal
T328 205-211 SO:0000418 denotes signal
T329 212-222 SO:0001633 denotes downstream
T330 242-255 D051785 denotes Smad proteins