> top > docs > PMC:1134658 > spans > 20998-21298 > annotations

PMC:1134658 / 20998-21298 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9589 0-2 IN denotes In
T9590 3-11 NN denotes contrast
T9591 12-14 TO denotes to
T9592 15-18 DT denotes the
T9593 19-31 NN denotes upregulation
T9594 32-34 IN denotes of
T9595 35-40 NN denotes BMP-6
T9596 41-51 NN denotes transcript
T9597 52-54 IN denotes in
T9598 55-56 NN denotes B
T9599 57-62 NN denotes cells
T9600 62-63 -COMMA- denotes ,
T9601 64-66 PRP denotes we
T9602 67-71 VB denotes were
T9603 72-75 RB denotes not
T9604 76-80 JJ denotes able
T9605 81-83 TO denotes to
T9606 84-90 VB denotes detect
T9607 91-96 NN denotes BMP-6
T9608 97-108 NN denotes transcripts
T9609 109-111 IN denotes in
T9610 112-117 JJ denotes human
T9611 118-128 JJ denotes peripheral
T9612 129-134 NN denotes blood
T9613 135-139 JJ denotes CD4+
T9614 140-142 CC denotes or
T9615 143-147 JJ denotes CD8+
T9616 148-149 NN denotes T
T9617 150-155 NN denotes cells
T9618 156-157 -LRB- denotes (
T9619 157-164 VB denotes resting
T9620 165-167 CC denotes or
T9621 168-178 VB denotes stimulated
T9622 179-183 IN denotes with
T9623 184-192 JJ denotes anti-CD3
T9624 193-196 CC denotes and
T9625 197-206 JJ denotes anti-CD28
T9626 206-207 -COLON- denotes ;
T9627 208-212 NN denotes data
T9628 213-216 RB denotes not
T9629 217-222 VB denotes shown
T9630 222-223 -RRB- denotes )
T9631 223-224 -COMMA- denotes ,
T9632 225-235 JJ denotes consistent
T9633 236-240 IN denotes with
T9634 241-244 DT denotes the
T9635 245-253 NN denotes findings
T9636 254-256 IN denotes in
T9637 257-258 NN denotes T
T9638 259-263 NN denotes cell
T9639 264-269 NN denotes lines
T9640 270-271 -LRB- denotes [
T9641 271-273 CD denotes 20
T9642 273-274 -RRB- denotes ]
T9643 275-278 CC denotes and
T9644 279-280 NN denotes T
T9645 281-286 NN denotes cells
T9646 287-289 IN denotes in
T9647 290-294 NN denotes mice
T9648 295-296 -LRB- denotes [
T9649 296-298 CD denotes 43
T9650 298-299 -RRB- denotes ]
R7606 T9589 T9591 arg1Of In,to
R7607 T9590 T9589 arg2Of contrast,In
R7609 T9593 T9589 arg3Of upregulation,In
R7610 T9593 T9592 arg1Of upregulation,the
R7611 T9593 T9594 arg1Of upregulation,of
R7612 T9596 T9594 arg2Of transcript,of
R7613 T9596 T9595 arg1Of transcript,BMP-6
R7614 T9596 T9597 arg1Of transcript,in
R7616 T9599 T9597 arg2Of cells,in
R7617 T9599 T9598 arg1Of cells,B
R7620 T9601 T9602 arg1Of we,were
R7621 T9601 T9604 arg1Of we,able
R7622 T9601 T9606 arg1Of we,detect
R7624 T9601 T9632 arg1Of we,consistent
R7625 T9602 T9589 arg1Of were,In
R7627 T9602 T9600 arg1Of were,","
R7628 T9602 T9603 arg1Of were,not
R7629 T9602 T9631 arg1Of were,","
R7630 T9602 T9632 modOf were,consistent
R7631 T9602 T9648 arg1Of were,[
R7632 T9604 T9602 arg2Of able,were
R7634 T9606 T9604 arg2Of detect,able
R7635 T9606 T9605 arg1Of detect,to
R7636 T9608 T9606 arg2Of transcripts,detect
R7637 T9608 T9607 arg1Of transcripts,BMP-6
R7638 T9608 T9609 arg1Of transcripts,in
R7641 T9613 T9614 arg1Of CD4+,or
R7642 T9615 T9614 arg2Of CD8+,or
R7643 T9617 T9609 arg2Of cells,in
R7644 T9617 T9610 arg1Of cells,human
R7645 T9617 T9611 arg1Of cells,peripheral
R7646 T9617 T9612 arg1Of cells,blood
R7647 T9617 T9613 arg1Of cells,CD4+
R7648 T9617 T9615 arg1Of cells,CD8+
R7649 T9617 T9616 arg1Of cells,T
R7650 T9617 T9618 arg1Of cells,(
R7651 T9619 T9620 arg1Of resting,or
R7654 T9621 T9620 arg2Of stimulated,or
R7655 T9621 T9622 arg1Of stimulated,with
R7656 T9621 T9626 arg1Of stimulated,;
R7657 T9623 T9624 arg1Of anti-CD3,and
R7658 T9624 T9622 arg2Of and,with
R7659 T9625 T9624 arg2Of anti-CD28,and
R7661 T9627 T9618 arg2Of data,(
R7662 T9627 T9619 arg1Of data,resting
R7663 T9627 T9621 arg2Of data,stimulated
R7664 T9627 T9629 arg2Of data,shown
R7665 T9629 T9628 arg1Of shown,not
R7666 T9630 T9618 arg3Of ),(
R7668 T9632 T9633 arg1Of consistent,with
R7670 T9635 T9633 arg2Of findings,with
R7671 T9635 T9634 arg1Of findings,the
R7672 T9635 T9636 arg1Of findings,in
R7673 T9635 T9646 arg1Of findings,in
R7675 T9639 T9637 arg1Of lines,T
R7676 T9639 T9638 arg1Of lines,cell
R7677 T9639 T9640 arg1Of lines,[
R7678 T9639 T9643 arg1Of lines,and
R7680 T9641 T9640 arg2Of 20,[
R7681 T9642 T9640 arg3Of ],[
R7683 T9643 T9636 arg2Of and,in
R7684 T9645 T9643 arg2Of cells,and
R7685 T9645 T9644 arg1Of cells,T
R7686 T9647 T9646 arg2Of mice,in
R7687 T9649 T9648 arg2Of 43,[
R7689 T9650 T9648 arg3Of ],[

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12019 0-2 IN denotes In
T12020 3-11 NN denotes contrast
T12021 12-14 TO denotes to
T12022 15-18 DT denotes the
T12023 19-31 NN denotes upregulation
T12024 32-34 IN denotes of
T12025 35-40 NNP denotes BMP-6
T12026 41-51 NN denotes transcript
T12027 52-54 IN denotes in
T12028 55-56 NNP denotes B
T12029 57-62 NNS denotes cells
T12030 62-63 , denotes ,
T12031 64-66 PRP denotes we
T12032 67-71 VBD denotes were
T12033 72-75 RB denotes not
T12034 76-80 JJ denotes able
T12035 81-83 TO denotes to
T12036 84-90 VB denotes detect
T12037 91-96 NNP denotes BMP-6
T12038 97-108 NNS denotes transcripts
T12039 109-111 IN denotes in
T12040 112-117 JJ denotes human
T12041 118-128 JJ denotes peripheral
T12042 129-134 NN denotes blood
T12043 135-138 NNP denotes CD4
T12044 138-139 CD denotes +
T12045 140-142 CC denotes or
T12046 143-146 CD denotes CD8
T12047 146-147 CD denotes +
T12048 148-149 NNP denotes T
T12049 150-155 NNS denotes cells
T12050 156-157 -LRB- denotes (
T12051 157-164 VBG denotes resting
T12052 165-167 CC denotes or
T12053 168-178 VBN denotes stimulated
T12054 179-183 IN denotes with
T12055 184-192 JJ denotes anti-CD3
T12056 193-196 CC denotes and
T12057 197-206 JJ denotes anti-CD28
T12058 206-207 : denotes ;
T12059 208-212 NNS denotes data
T12060 213-216 RB denotes not
T12061 217-222 VBN denotes shown
T12062 222-223 -RRB- denotes )
T12063 223-224 , denotes ,
T12064 225-235 JJ denotes consistent
T12065 236-240 IN denotes with
T12066 241-244 DT denotes the
T12067 245-253 NNS denotes findings
T12068 254-256 IN denotes in
T12069 257-258 NNP denotes T
T12070 259-263 NN denotes cell
T12071 264-269 NNS denotes lines
T12072 270-271 NNP denotes [
T12073 271-273 CD denotes 20
T12074 273-274 NNP denotes ]
T12075 275-278 CC denotes and
T12076 279-280 NNP denotes T
T12077 281-286 NNS denotes cells
T12078 287-289 IN denotes in
T12079 290-294 NNS denotes mice
T12080 295-296 NNP denotes [
T12081 296-298 CD denotes 43
T12082 298-299 NNP denotes ]
T12083 299-300 . denotes .
R9518 T12019 T12032 prep In,were
R9519 T12020 T12019 pobj contrast,In
R9520 T12021 T12020 prep to,contrast
R9521 T12022 T12023 det the,upregulation
R9523 T12023 T12021 pobj upregulation,to
R9524 T12024 T12023 prep of,upregulation
R9525 T12025 T12026 compound BMP-6,transcript
R9526 T12026 T12024 pobj transcript,of
R9527 T12027 T12023 prep in,upregulation
R9528 T12028 T12029 compound B,cells
R9530 T12029 T12027 pobj cells,in
R9531 T12030 T12032 punct ",",were
R9532 T12031 T12032 nsubj we,were
R9534 T12032 T12032 ROOT were,were
R9535 T12033 T12032 neg not,were
R9536 T12034 T12032 acomp able,were
R9538 T12035 T12036 aux to,detect
R9539 T12036 T12034 xcomp detect,able
R9541 T12037 T12038 compound BMP-6,transcripts
R9542 T12038 T12036 dobj transcripts,detect
R9543 T12039 T12036 prep in,detect
R9545 T12040 T12042 amod human,blood
R9546 T12041 T12042 amod peripheral,blood
R9547 T12042 T12043 compound blood,CD4
R9548 T12043 T12039 pobj CD4,in
R9550 T12044 T12043 nummod +,CD4
R9551 T12045 T12043 cc or,CD4
R9552 T12046 T12049 nummod CD8,cells
R9554 T12047 T12049 nummod +,cells
R9555 T12048 T12049 compound T,cells
R9556 T12049 T12043 conj cells,CD4
R9558 T12050 T12051 punct (,resting
R9559 T12051 T12043 acl resting,CD4
R9561 T12052 T12051 cc or,resting
R9562 T12053 T12051 conj stimulated,resting
R9563 T12054 T12053 prep with,stimulated
R9565 T12055 T12059 amod anti-CD3,data
R9566 T12056 T12055 cc and,anti-CD3
R9567 T12057 T12055 conj anti-CD28,anti-CD3
R9568 T12058 T12059 punct ;,data
R9569 T12059 T12054 pobj data,with
R9570 T12060 T12061 neg not,shown
R9572 T12061 T12059 acl shown,data
R9573 T12062 T12059 punct ),data
R9574 T12063 T12059 punct ",",data
R9575 T12064 T12059 amod consistent,data
R9577 T12065 T12064 prep with,consistent
R9578 T12066 T12067 det the,findings
R9579 T12067 T12065 pobj findings,with
R9581 T12068 T12067 prep in,findings
R9582 T12069 T12070 compound T,cell
R9583 T12070 T12071 compound cell,lines
R9585 T12071 T12068 pobj lines,in
R9586 T12072 T12074 nmod [,]
R9588 T12073 T12074 nummod 20,]
R9589 T12074 T12077 nmod ],cells
R9590 T12075 T12074 cc and,]
R9592 T12076 T12074 conj T,]
R9593 T12077 T12067 conj cells,findings
R9594 T12078 T12067 prep in,findings
R9596 T12079 T12078 pobj mice,in
R9597 T12080 T12082 nmod [,]
R9598 T12081 T12082 nummod 43,]
R9601 T12082 T12067 appos ],findings
R9602 T12083 T12032 punct .,were

UBERON-AE

Id Subject Object Predicate Lexical cue
T7550 129-134 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-CC

Id Subject Object Predicate Lexical cue
T12291 57-62 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T12292 150-155 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T12293 281-286 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7872 0-300 Sentence denotes In contrast to the upregulation of BMP-6 transcript in B cells, we were not able to detect BMP-6 transcripts in human peripheral blood CD4+ or CD8+ T cells (resting or stimulated with anti-CD3 and anti-CD28; data not shown), consistent with the findings in T cell lines [20] and T cells in mice [43].
T161 0-300 Sentence denotes In contrast to the upregulation of BMP-6 transcript in B cells, we were not able to detect BMP-6 transcripts in human peripheral blood CD4+ or CD8+ T cells (resting or stimulated with anti-CD3 and anti-CD28; data not shown), consistent with the findings in T cell lines [20] and T cells in mice [43].

events-check-again

Id Subject Object Predicate Lexical cue Negation
T13180 19-31 Positive_regulation denotes upregulation
T13181 35-40 Protein denotes BMP-6
T13182 84-90 Transcription denotes detect true
T13183 91-96 Protein denotes BMP-6
T13184 135-138 Protein denotes CD4
T13185 143-146 Protein denotes CD8
T13186 189-192 Protein denotes CD3
T13187 202-206 Protein denotes CD28
R10304 T13181 T13180 themeOf BMP-6,upregulation
R10305 T13183 T13182 themeOf BMP-6,detect

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T12471 84-90 Transcription denotes detect
T12472 91-108 Protein denotes BMP-6 transcripts
T12473 135-139 Protein denotes CD4+
T12474 143-147 Protein denotes CD8+
T12475 184-192 Protein denotes anti-CD3
T12476 197-206 Protein denotes anti-CD28
R9914 T12472 T12471 themeOf BMP-6 transcripts,detect

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T7784 19-31 Positive_regulation denotes upregulation
T7785 35-40 Protein denotes BMP-6
T7786 84-90 Transcription denotes detect true
T7787 91-96 Protein denotes BMP-6
T7788 135-138 Protein denotes CD4
T7789 143-146 Protein denotes CD8
T7790 189-192 Protein denotes CD3
T7791 202-206 Protein denotes CD28
R5961 T7785 T7784 themeOf BMP-6,upregulation
R5962 T7787 T7786 themeOf BMP-6,detect

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10192 35-38 P22004 denotes BMP
T10193 35-38 P18075 denotes BMP
T10194 35-38 P12643 denotes BMP
T10195 35-38 P12644 denotes BMP
T10196 35-40 P22004 denotes BMP-6
T10197 76-80 P00519 denotes able
T10198 91-94 P12643 denotes BMP
T10199 91-94 P12644 denotes BMP
T10200 91-94 P18075 denotes BMP
T10201 91-94 P22004 denotes BMP
T10202 91-96 P22004 denotes BMP-6
T10203 135-138 P01730 denotes CD4
T10204 143-146 P01732 denotes CD8
T10205 143-146 P10966 denotes CD8
T10206 189-192 P07766 denotes CD3
T10207 189-192 P20963 denotes CD3
T10208 189-192 P04234 denotes CD3
T10209 189-192 P09693 denotes CD3
T10210 202-206 P10747 denotes CD28

test2

Id Subject Object Predicate Lexical cue
T7529 19-31 Positive_regulation denotes upregulation
T7530 35-40 Protein denotes BMP-6
T7531 91-96 Protein denotes BMP-6
T7532 135-138 Protein denotes CD4
T7533 143-146 Protein denotes CD8
T7534 189-192 Protein denotes CD3
T7535 202-206 Protein denotes CD28
R5817 T7530 T7529 themeOf BMP-6,upregulation

tees-test

Id Subject Object Predicate Lexical cue
T2356 35-40 D055418 denotes BMP-6
T2357 35-40 D055418 denotes BMP-6
T2358 35-40 Q04906 denotes BMP-6
T2359 35-40 PR:000000167 denotes BMP-6
T2360 35-40 P20722 denotes BMP-6
T2361 35-40 PR:Q04906 denotes BMP-6
T2362 35-40 P22004 denotes BMP-6
T2363 35-40 PR:P22004 denotes BMP-6
T2364 35-40 PR:P20722 denotes BMP-6
T2365 41-51 SO:0000673 denotes transcript
T2366 91-96 D055418 denotes BMP-6
T2367 91-96 D055418 denotes BMP-6
T2368 91-96 Q04906 denotes BMP-6
T2369 91-96 PR:000000167 denotes BMP-6
T2370 91-96 P20722 denotes BMP-6
T2371 91-96 PR:Q04906 denotes BMP-6
T2372 91-96 P22004 denotes BMP-6
T2373 91-96 PR:P22004 denotes BMP-6
T2374 91-96 PR:P20722 denotes BMP-6
T2375 112-117 D006801 denotes human
T2376 135-138 PR:000001004 denotes CD4
T2377 135-138 PR:P06332 denotes CD4
T2378 135-138 PR:P05540 denotes CD4
T2379 135-138 PR:P01730 denotes CD4
T2380 202-206 PR:P31041 denotes CD28
T2381 202-206 PR:P31043 denotes CD28
T2382 202-206 PR:P10747 denotes CD28
T2383 202-206 PR:000001841 denotes CD28
T2384 202-206 PR:P31042 denotes CD28
T2385 213-222 32644 denotes not shown
T2386 257-263 CL:0000084 denotes T cell
T2387 290-294 PR:000005054 denotes mice
T2388 290-294 O89094 denotes mice
T2389 290-294 D051379 denotes mice
T2390 290-294 10095 denotes mice