PMC:1134658 / 16022-16180
Annnotations
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T8730 | 0-2 | IN | denotes | In |
T8731 | 3-7 | DT | denotes | that |
T8732 | 8-15 | NN | denotes | respect |
T8733 | 15-16 | -COMMA- | denotes | , |
T8734 | 17-19 | PRP | denotes | it |
T8735 | 20-22 | VB | denotes | is |
T8736 | 23-33 | JJ | denotes | noteworthy |
T8737 | 34-38 | IN | denotes | that |
T8738 | 39-44 | NN | denotes | TGF-β |
T8739 | 45-55 | NN | denotes | signalling |
T8740 | 56-58 | IN | denotes | in |
T8741 | 59-64 | JJ | denotes | early |
T8742 | 65-68 | CC | denotes | and |
T8743 | 69-75 | JJ | denotes | mature |
T8744 | 76-77 | NN | denotes | B |
T8745 | 78-83 | NN | denotes | cells |
T8746 | 84-91 | VB | denotes | induces |
T8747 | 92-96 | CC | denotes | both |
T8748 | 97-100 | NN | denotes | Id2 |
T8749 | 101-104 | CC | denotes | and |
T8750 | 105-108 | NN | denotes | Id3 |
T8751 | 109-119 | NN | denotes | expression |
T8752 | 120-121 | -LRB- | denotes | [ |
T8753 | 121-126 | CD | denotes | 36,37 |
T8754 | 126-127 | -RRB- | denotes | ] |
T8755 | 127-128 | -COMMA- | denotes | , |
T8756 | 129-132 | CC | denotes | but |
T8757 | 133-136 | RB | denotes | not |
T8758 | 137-140 | NN | denotes | Id1 |
T8759 | 141-142 | -LRB- | denotes | ( |
T8760 | 142-146 | NN | denotes | data |
T8761 | 147-150 | RB | denotes | not |
T8762 | 151-156 | VB | denotes | shown |
T8763 | 156-157 | -RRB- | denotes | ) |
R6768 | T8732 | T8730 | arg2Of | respect,In |
R6769 | T8732 | T8731 | arg1Of | respect,that |
R6770 | T8735 | T8730 | arg1Of | is,In |
R6771 | T8735 | T8733 | arg1Of | is,"," |
R6772 | T8736 | T8735 | arg2Of | noteworthy,is |
R6773 | T8739 | T8738 | arg1Of | signalling,TGF-β |
R6774 | T8739 | T8740 | arg1Of | signalling,in |
R6775 | T8739 | T8746 | arg1Of | signalling,induces |
R6776 | T8741 | T8742 | arg1Of | early,and |
R6777 | T8743 | T8742 | arg2Of | mature,and |
R6778 | T8745 | T8740 | arg2Of | cells,in |
R6779 | T8745 | T8741 | arg1Of | cells,early |
R6780 | T8745 | T8743 | arg1Of | cells,mature |
R6781 | T8745 | T8744 | arg1Of | cells,B |
R6782 | T8746 | T8734 | arg1Of | induces,it |
R6783 | T8746 | T8735 | arg1Of | induces,is |
R6784 | T8746 | T8736 | arg1Of | induces,noteworthy |
R6785 | T8746 | T8737 | arg1Of | induces,that |
R6786 | T8748 | T8749 | arg1Of | Id2,and |
R6787 | T8750 | T8749 | arg2Of | Id3,and |
R6788 | T8751 | T8747 | arg1Of | expression,both |
R6789 | T8751 | T8748 | arg1Of | expression,Id2 |
R6790 | T8751 | T8750 | arg1Of | expression,Id3 |
R6791 | T8751 | T8752 | arg1Of | expression,[ |
R6792 | T8751 | T8756 | arg1Of | expression,but |
R6793 | T8753 | T8752 | arg2Of | "36,37",[ |
R6794 | T8754 | T8752 | arg3Of | ],[ |
R6795 | T8756 | T8746 | arg2Of | but,induces |
R6796 | T8756 | T8755 | arg1Of | but,"," |
R6797 | T8758 | T8756 | arg2Of | Id1,but |
R6798 | T8758 | T8757 | arg1Of | Id1,not |
R6799 | T8758 | T8759 | arg1Of | Id1,( |
R6800 | T8760 | T8759 | arg2Of | data,( |
R6801 | T8760 | T8762 | arg2Of | data,shown |
R6802 | T8762 | T8761 | arg1Of | shown,not |
R6803 | T8763 | T8759 | arg3Of | ),( |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11127 | 0-2 | IN | denotes | In |
T11128 | 3-7 | DT | denotes | that |
T11129 | 8-15 | NN | denotes | respect |
T11130 | 15-16 | , | denotes | , |
T11131 | 17-19 | PRP | denotes | it |
T11132 | 20-22 | VBZ | denotes | is |
T11133 | 23-33 | JJ | denotes | noteworthy |
T11134 | 34-38 | IN | denotes | that |
T11135 | 39-44 | JJ | denotes | TGF-β |
T11136 | 45-55 | NN | denotes | signalling |
T11137 | 56-58 | IN | denotes | in |
T11138 | 59-64 | JJ | denotes | early |
T11139 | 65-68 | CC | denotes | and |
T11140 | 69-75 | JJ | denotes | mature |
T11141 | 76-77 | NNP | denotes | B |
T11142 | 78-83 | NNS | denotes | cells |
T11143 | 84-91 | VBZ | denotes | induces |
T11144 | 92-96 | DT | denotes | both |
T11145 | 97-100 | JJ | denotes | Id2 |
T11146 | 101-104 | CC | denotes | and |
T11147 | 105-108 | JJ | denotes | Id3 |
T11148 | 109-119 | NN | denotes | expression |
T11149 | 120-121 | NNP | denotes | [ |
T11150 | 121-126 | CD | denotes | 36,37 |
T11151 | 126-127 | NNP | denotes | ] |
T11152 | 127-128 | , | denotes | , |
T11153 | 129-132 | CC | denotes | but |
T11154 | 133-136 | RB | denotes | not |
T11155 | 137-140 | JJ | denotes | Id1 |
T11156 | 141-142 | -LRB- | denotes | ( |
T11157 | 142-146 | NNS | denotes | data |
T11158 | 147-150 | RB | denotes | not |
T11159 | 151-156 | VBN | denotes | shown |
T11160 | 156-157 | -RRB- | denotes | ) |
T11161 | 157-158 | . | denotes | . |
R8635 | T11127 | T11132 | prep | In,is |
R8637 | T11128 | T11129 | det | that,respect |
R8641 | T11129 | T11127 | pobj | respect,In |
R8644 | T11130 | T11132 | punct | ",",is |
R8647 | T11131 | T11132 | nsubj | it,is |
R8651 | T11132 | T11132 | ROOT | is,is |
R8654 | T11133 | T11132 | acomp | noteworthy,is |
R8657 | T11134 | T11143 | mark | that,induces |
R8658 | T11135 | T11136 | amod | TGF-β,signalling |
R8662 | T11136 | T11143 | nsubj | signalling,induces |
R8669 | T11137 | T11136 | prep | in,signalling |
R8673 | T11138 | T11142 | amod | early,cells |
R8676 | T11139 | T11138 | cc | and,early |
R8680 | T11140 | T11138 | conj | mature,early |
R8683 | T11141 | T11142 | compound | B,cells |
R8688 | T11142 | T11137 | pobj | cells,in |
R8692 | T11143 | T11132 | ccomp | induces,is |
R8695 | T11144 | T11145 | preconj | both,Id2 |
R8699 | T11145 | T11148 | amod | Id2,expression |
R8702 | T11146 | T11145 | cc | and,Id2 |
R8706 | T11147 | T11145 | conj | Id3,Id2 |
R8711 | T11148 | T11151 | compound | expression,] |
R8712 | T11149 | T11151 | compound | [,] |
R8714 | T11150 | T11151 | compound | "36,37",] |
R8720 | T11151 | T11143 | dobj | ],induces |
R8725 | T11152 | T11143 | punct | ",",induces |
R8728 | T11153 | T11143 | cc | but,induces |
R8729 | T11154 | T11155 | neg | not,Id1 |
R8730 | T11155 | T11143 | conj | Id1,induces |
R8731 | T11156 | T11159 | punct | (,shown |
R8733 | T11157 | T11159 | nsubjpass | data,shown |
R8736 | T11158 | T11159 | neg | not,shown |
R8738 | T11159 | T11155 | parataxis | shown,Id1 |
R8742 | T11160 | T11159 | punct | ),shown |
R8745 | T11161 | T11132 | punct | .,is |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7916 | 45-55 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signalling |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12273 | 78-83 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7839 | 0-158 | Sentence | denotes | In that respect, it is noteworthy that TGF-β signalling in early and mature B cells induces both Id2 and Id3 expression [36,37], but not Id1 (data not shown). |
T128 | 0-158 | Sentence | denotes | In that respect, it is noteworthy that TGF-β signalling in early and mature B cells induces both Id2 and Id3 expression [36,37], but not Id1 (data not shown). |
events-check-again
Id | Subject | Object | Predicate | Lexical cue | Negation |
---|---|---|---|---|---|
T13088 | 39-44 | Protein | denotes | TGF-β | |
T13089 | 84-91 | Positive_regulation | denotes | induces | |
T13090 | 84-91 | Positive_regulation | denotes | induces | true |
T13091 | 84-91 | Positive_regulation | denotes | induces | |
T13092 | 97-100 | Protein | denotes | Id2 | |
T13093 | 105-108 | Protein | denotes | Id3 | |
T13094 | 109-119 | Gene_expression | denotes | expression | |
T13095 | 109-119 | Gene_expression | denotes | expression | |
T13096 | 137-140 | Protein | denotes | Id1 | |
R10255 | T13092 | T13095 | themeOf | Id2,expression | |
R10259 | T13093 | T13094 | themeOf | Id3,expression | |
R10263 | T13094 | T13091 | themeOf | expression,induces | |
R10264 | T13095 | T13089 | themeOf | expression,induces | |
R10267 | T13096 | T13090 | themeOf | Id1,induces |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12392 | 39-44 | Protein | denotes | TGF-β |
T12393 | 84-91 | Positive_regulation | denotes | induces |
T12394 | 84-91 | Positive_regulation | denotes | induces |
T12395 | 84-91 | Positive_regulation | denotes | induces |
T12396 | 97-100 | Protein | denotes | Id2 |
T12397 | 105-108 | Protein | denotes | Id3 |
T12398 | 109-119 | Gene_expression | denotes | expression |
T12399 | 109-119 | Gene_expression | denotes | expression |
T12400 | 109-119 | Gene_expression | denotes | expression |
T12401 | 137-140 | Protein | denotes | Id1 |
R9860 | T12396 | T12398 | themeOf | Id2,expression |
R9861 | T12397 | T12399 | themeOf | Id3,expression |
R9863 | T12398 | T12393 | themeOf | expression,induces |
R9864 | T12399 | T12394 | themeOf | expression,induces |
R9865 | T12400 | T12395 | themeOf | expression,induces |
R9866 | T12401 | T12400 | themeOf | Id1,expression |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue | Negation |
---|---|---|---|---|---|
T7692 | 39-44 | Protein | denotes | TGF-β | |
T7693 | 84-91 | Positive_regulation | denotes | induces | |
T7694 | 84-91 | Positive_regulation | denotes | induces | true |
T7695 | 84-91 | Positive_regulation | denotes | induces | |
T7696 | 97-100 | Protein | denotes | Id2 | |
T7697 | 105-108 | Protein | denotes | Id3 | |
T7698 | 109-119 | Gene_expression | denotes | expression | |
T7699 | 109-119 | Gene_expression | denotes | expression | |
T7700 | 137-140 | Protein | denotes | Id1 | |
R5908 | T7696 | T7699 | themeOf | Id2,expression | |
R5909 | T7697 | T7698 | themeOf | Id3,expression | |
R5910 | T7698 | T7695 | themeOf | expression,induces | |
R5911 | T7699 | T7693 | themeOf | expression,induces | |
R5912 | T7700 | T7694 | themeOf | Id1,induces |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10037 | 39-44 | P01137 | denotes | TGF-β |
T10038 | 97-100 | Q02363 | denotes | Id2 |
T10039 | 105-108 | Q02535 | denotes | Id3 |
T10040 | 137-140 | P41134 | denotes | Id1 |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7453 | 39-44 | Protein | denotes | TGF-β |
T7454 | 84-91 | Positive_regulation | denotes | induces |
T7455 | 97-100 | Protein | denotes | Id2 |
T7456 | 105-108 | Protein | denotes | Id3 |
T7457 | 109-119 | Gene_expression | denotes | expression |
T7458 | 137-140 | Protein | denotes | Id1 |
R5780 | T7455 | T7457 | themeOf | Id2,expression |
R5781 | T7456 | T7457 | themeOf | Id3,expression |
R5782 | T7457 | T7454 | themeOf | expression,induces |
R5783 | T7458 | T7454 | themeOf | Id1,induces |
tees-test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1905 | 39-44 | PR:000000046 | denotes | TGF-β |
T1906 | 39-44 | D016212 | denotes | TGF-β |
T1907 | 39-44 | D016212 | denotes | TGF-β |
T1908 | 45-55 | GO:0023052 | denotes | signalling |
T1909 | 97-100 | PR:000000040 | denotes | Id2 |
T1910 | 97-100 | PR:P41137 | denotes | Id2 |
T1911 | 97-100 | PR:Q02363 | denotes | Id2 |
T1912 | 97-100 | PR:P41136 | denotes | Id2 |
T1913 | 97-100 | C039556 | denotes | Id2 |
T1914 | 97-100 | C039556 | denotes | Id2 |
T1915 | 105-108 | PR:P41133 | denotes | Id3 |
T1916 | 105-108 | PR:P41138 | denotes | Id3 |
T1917 | 105-108 | PR:Q02535 | denotes | Id3 |
T1918 | 105-108 | PR:000000041 | denotes | Id3 |
T1919 | 137-140 | PR:P41134 | denotes | Id1 |
T1920 | 137-140 | PR:P20067 | denotes | Id1 |
T1921 | 137-140 | PR:P41135 | denotes | Id1 |
T1922 | 137-140 | PR:000000039 | denotes | Id1 |
T1923 | 147-156 | 32644 | denotes | not shown |