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PMC:1087847 / 36667-36924 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10557 0-257 sentence denotes They were resuspended in buffer1 (0.32 M sucrose, 10 mM Tris, pH8.0, 3 mM CaCl2, 2 mM Mg-acetate, 0.1 mM EDTA, 0.5% NP40, 1 mM DTT, 0.5 mM PMSF; 1 × 107cells/400μl buffer) and sonified on ice (sonifier UP200S, dr.hielscher, 40 s, amplitude 50%, cycle 0.5).
T10558 1-5 PRP denotes They
T10559 11-22 VBN denotes resuspended
T10560 6-10 VBD denotes were
T10561 23-25 IN denotes in
T10562 26-33 NN denotes buffer1
T10563 34-35 -LRB- denotes (
T10564 42-49 NN denotes sucrose
T10565 35-39 CD denotes 0.32
T10566 40-41 NN denotes M
T10567 49-51 , denotes ,
T10568 51-53 CD denotes 10
T10569 54-56 NN denotes mM
T10570 57-61 NN denotes Tris
T10571 61-63 , denotes ,
T10572 63-68 NN denotes pH8.0
T10573 68-70 , denotes ,
T10574 70-71 CD denotes 3
T10575 72-74 NN denotes mM
T10576 75-80 NN denotes CaCl2
T10577 80-82 , denotes ,
T10578 82-83 CD denotes 2
T10579 84-86 NN denotes mM
T10580 90-97 NN denotes acetate
T10581 87-89 NN denotes Mg
T10582 89-90 HYPH denotes -
T10583 97-99 , denotes ,
T10584 99-102 CD denotes 0.1
T10585 103-105 NN denotes mM
T10586 106-110 NN denotes EDTA
T10587 110-112 , denotes ,
T10588 112-115 CD denotes 0.5
T10589 115-116 NN denotes %
T10590 117-121 NN denotes NP40
T10591 121-123 , denotes ,
T10592 123-124 CD denotes 1
T10593 125-127 NN denotes mM
T10594 128-131 NN denotes DTT
T10595 131-133 , denotes ,
T10596 133-136 CD denotes 0.5
T10597 137-139 NN denotes mM
T10598 140-144 NN denotes PMSF
T10599 144-145 : denotes ;
T10600 146-147 CD denotes 1
T10601 150-158 NNS denotes 107cells
T10602 148-149 SYM denotes ×
T10603 158-159 SYM denotes /
T10604 165-171 NN denotes buffer
T10605 159-164 NN denotes 400μl
T10606 171-172 -RRB- denotes )
T10607 173-176 CC denotes and
T10608 177-185 VBN denotes sonified
T10609 186-188 IN denotes on
T10610 189-192 NN denotes ice
T10611 193-194 -LRB- denotes (
T10612 246-251 NN denotes cycle
T10613 194-202 NN denotes sonifier
T10614 203-209 NN denotes UP200S
T10615 209-211 , denotes ,
T10616 211-223 NNP denotes dr.hielscher
T10617 223-225 , denotes ,
T10618 225-227 CD denotes 40
T10619 228-229 NN denotes s
T10620 229-231 , denotes ,
T10621 231-240 NN denotes amplitude
T10622 243-244 NN denotes %
T10623 241-243 CD denotes 50
T10624 244-246 , denotes ,
T10625 252-255 CD denotes 0.5
T10626 255-256 -RRB- denotes )
T10627 256-257 . denotes .
R5080 T10558 T10559 nsubjpass They,resuspended
R5081 T10560 T10559 auxpass were,resuspended
R5082 T10561 T10559 prep in,resuspended
R5083 T10562 T10561 pobj buffer1,in
R5084 T10563 T10564 punct (,sucrose
R5085 T10564 T10562 parataxis sucrose,buffer1
R5086 T10565 T10566 nummod 0.32,M
R5087 T10566 T10564 compound M,sucrose
R5088 T10567 T10564 punct ", ",sucrose
R5089 T10568 T10569 nummod 10,mM
R5090 T10569 T10570 compound mM,Tris
R5091 T10570 T10564 appos Tris,sucrose
R5092 T10571 T10570 punct ", ",Tris
R5093 T10572 T10570 npadvmod pH8.0,Tris
R5094 T10573 T10564 punct ", ",sucrose
R5095 T10574 T10575 nummod 3,mM
R5096 T10575 T10576 compound mM,CaCl2
R5097 T10576 T10564 appos CaCl2,sucrose
R5098 T10577 T10564 punct ", ",sucrose
R5099 T10578 T10579 nummod 2,mM
R5100 T10579 T10580 compound mM,acetate
R5101 T10580 T10564 appos acetate,sucrose
R5102 T10581 T10580 compound Mg,acetate
R5103 T10582 T10580 punct -,acetate
R5104 T10583 T10564 punct ", ",sucrose
R5105 T10584 T10585 nummod 0.1,mM
R5106 T10585 T10586 compound mM,EDTA
R5107 T10586 T10564 appos EDTA,sucrose
R5108 T10587 T10564 punct ", ",sucrose
R5109 T10588 T10589 nummod 0.5,%
R5110 T10589 T10590 compound %,NP40
R5111 T10590 T10564 appos NP40,sucrose
R5112 T10591 T10564 punct ", ",sucrose
R5113 T10592 T10593 nummod 1,mM
R5114 T10593 T10594 compound mM,DTT
R5115 T10594 T10564 appos DTT,sucrose
R5116 T10595 T10564 punct ", ",sucrose
R5117 T10596 T10597 nummod 0.5,mM
R5118 T10597 T10598 compound mM,PMSF
R5119 T10598 T10564 appos PMSF,sucrose
R5120 T10599 T10564 punct ;,sucrose
R5121 T10600 T10601 nummod 1,107cells
R5122 T10601 T10564 appos 107cells,sucrose
R5123 T10602 T10600 punct ×,1
R5124 T10603 T10604 punct /,buffer
R5125 T10604 T10601 prep buffer,107cells
R5126 T10605 T10604 compound 400μl,buffer
R5127 T10606 T10564 punct ),sucrose
R5128 T10607 T10559 cc and,resuspended
R5129 T10608 T10559 conj sonified,resuspended
R5130 T10609 T10608 prep on,sonified
R5131 T10610 T10609 pobj ice,on
R5132 T10611 T10612 punct (,cycle
R5133 T10612 T10608 parataxis cycle,sonified
R5134 T10613 T10614 compound sonifier,UP200S
R5135 T10614 T10612 dep UP200S,cycle
R5136 T10615 T10612 punct ", ",cycle
R5137 T10616 T10612 dep dr.hielscher,cycle
R5138 T10617 T10612 punct ", ",cycle
R5139 T10618 T10619 nummod 40,s
R5140 T10619 T10612 dep s,cycle
R5141 T10620 T10612 punct ", ",cycle
R5142 T10621 T10622 dep amplitude,%
R5143 T10622 T10612 dep %,cycle
R5144 T10623 T10622 nummod 50,%
R5145 T10624 T10612 punct ", ",cycle
R5146 T10625 T10612 nummod 0.5,cycle
R5147 T10626 T10612 punct ),cycle
R5148 T10627 T10559 punct .,resuspended

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10497 42-49 CHEBI:17992 denotes sucrose
T10498 57-61 CHEBI:9754 denotes Tris
T10499 75-80 CHEBI:3312 denotes CaCl2
T10500 87-97 CHEBI:62964 denotes Mg-acetate
T10501 106-110 CHEBI_EXT:EDTA denotes EDTA
T10502 117-121 CHEBI:63016 denotes NP40
T10503 128-131 CHEBI:18320 denotes DTT
T10504 140-144 CHEBI:8102 denotes PMSF
T10505 165-171 CHEBI_CHMO_EXT:buffer_solution denotes buffer

biosemtest

Id Subject Object Predicate Lexical cue
T10278 42-49 UMLS/C0038636 denotes sucrose
T10285 191-194 UMLS/C0025611 denotes e (
T10297 128-131 UMLS/C0012789 denotes DTT
T10313 106-110 UMLS/C0013618 denotes EDTA
T10336 167-173 UMLS/C0006353 denotes ffer)
T10397 57-61 UMLS/C0077281 denotes Tris
T10400 191-194 UMLS/C0349714 denotes e (
T10413 233-242 UMLS/C2346753 denotes plitude 5
T10424 106-110 UMLS/C0558745 denotes EDTA
T10427 248-253 UMLS/C1511572 denotes cle 0
T10445 191-194 UMLS/C0020746 denotes e (

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10460 42-49 CHEBI:17992 denotes sucrose
T10461 57-61 CHEBI:9754 denotes Tris
T10462 75-80 CHEBI:3312 denotes CaCl2
T10463 87-97 CHEBI:62964 denotes Mg-acetate
T10464 117-121 CHEBI:63016 denotes NP40
T10465 128-131 CHEBI:18320 denotes DTT
T10466 140-144 CHEBI:8102 denotes PMSF