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PMC:1087847 / 22161-22347 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T15174 0-186 sentence denotes Cells were fixed with paraformaldehyde, permeabilized with Triton X-100, pretreated with trypsin as indicated, and stained with Annexin A7 specific mAb 203–217, DAPI in blue, bar 10 μm.
T15175 1-6 NNS denotes Cells
T15176 12-17 VBN denotes fixed
T15177 7-11 VBD denotes were
T15178 18-22 IN denotes with
T15179 23-39 NN denotes paraformaldehyde
T15180 39-41 , denotes ,
T15181 41-54 VBN denotes permeabilized
T15182 55-59 IN denotes with
T15183 60-66 NN denotes Triton
T15184 67-68 NN denotes X
T15185 68-69 HYPH denotes -
T15186 69-72 CD denotes 100
T15187 72-74 , denotes ,
T15188 74-84 VBN denotes pretreated
T15189 85-89 IN denotes with
T15190 90-97 NN denotes trypsin
T15191 98-100 IN denotes as
T15192 101-110 VBN denotes indicated
T15193 110-112 , denotes ,
T15194 112-115 CC denotes and
T15195 116-123 VBN denotes stained
T15196 124-128 IN denotes with
T15197 129-136 NN denotes Annexin
T15198 137-139 NN denotes A7
T15199 140-148 JJ denotes specific
T15200 153-156 CD denotes 203
T15201 149-152 NN denotes mAb
T15202 156-157 SYM denotes –
T15203 157-160 CD denotes 217
T15204 160-162 , denotes ,
T15205 183-185 NN denotes μm
T15206 162-166 NN denotes DAPI
T15207 167-169 IN denotes in
T15208 170-174 JJ denotes blue
T15209 174-176 , denotes ,
T15210 176-179 NN denotes bar
T15211 180-182 CD denotes 10
T15212 185-186 . denotes .
R7163 T15175 T15176 nsubjpass Cells,fixed
R7164 T15177 T15176 auxpass were,fixed
R7165 T15178 T15176 prep with,fixed
R7166 T15179 T15178 pobj paraformaldehyde,with
R7167 T15180 T15176 punct ", ",fixed
R7168 T15181 T15176 conj permeabilized,fixed
R7169 T15182 T15181 prep with,permeabilized
R7170 T15183 T15184 compound Triton,X
R7171 T15184 T15182 pobj X,with
R7172 T15185 T15184 punct -,X
R7173 T15186 T15184 nummod 100,X
R7174 T15187 T15181 punct ", ",permeabilized
R7175 T15188 T15181 conj pretreated,permeabilized
R7176 T15189 T15188 prep with,pretreated
R7177 T15190 T15189 pobj trypsin,with
R7178 T15191 T15192 mark as,indicated
R7179 T15192 T15188 advcl indicated,pretreated
R7180 T15193 T15188 punct ", ",pretreated
R7181 T15194 T15188 cc and,pretreated
R7182 T15195 T15188 conj stained,pretreated
R7183 T15196 T15195 prep with,stained
R7184 T15197 T15198 compound Annexin,A7
R7185 T15198 T15199 npadvmod A7,specific
R7186 T15199 T15200 amod specific,203
R7187 T15200 T15196 pobj 203,with
R7188 T15201 T15200 nmod mAb,203
R7189 T15202 T15203 punct –,217
R7190 T15203 T15200 prep 217,203
R7191 T15204 T15205 punct ", ",μm
R7192 T15205 T15195 parataxis μm,stained
R7193 T15206 T15205 dep DAPI,μm
R7194 T15207 T15206 prep in,DAPI
R7195 T15208 T15207 amod blue,in
R7196 T15209 T15205 punct ", ",μm
R7197 T15210 T15205 dep bar,μm
R7198 T15211 T15205 nummod 10,μm
R7199 T15212 T15176 punct .,fixed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14989 1-6 CL_GO_EXT:cell denotes Cells
T14990 23-39 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T14991 60-72 CHEBI:9750 denotes Triton X-100
T14992 90-97 PR_EXT:000027795 denotes trypsin
T14993 129-139 PR_EXT:000004080 denotes Annexin A7
T14994 162-166 CHEBI:51231 denotes DAPI

biosemtest

Id Subject Object Predicate Lexical cue
T14728 92-99 UP/P23916 denotes ypsin a
T14731 92-99 UP/P00761 denotes ypsin a
T14734 14-19 UMLS/C0599992 denotes xed w
T14741 142-150 UMLS/C0205369 denotes ecific m
T14747 131-141 UP/Q92125 denotes nexin A7 s
T14748 118-125 UMLS/C1704680 denotes ained w
T14749 92-99 UP/P35048 denotes ypsin a
T14751 92-99 UP/P83348 denotes ypsin a
T14754 14-19 UMLS/C1522662 denotes xed w
T14757 92-99 UP/O97399 denotes ypsin a
T14760 92-99 UP/P35049 denotes ypsin a
T14762 14-19 UMLS/C0231441 denotes xed w
T14766 3-8 UMLS/C1269647 denotes lls w
T14768 92-99 UMLS/C0041236 denotes ypsin a
T14772 131-141 UP/Q07076 denotes nexin A7 s
T14773 92-99 UP/P81071 denotes ypsin a
T14775 118-125 UMLS/C0487602 denotes ained w
T14776 92-99 UP/P35034 denotes ypsin a
T14781 131-141 UP/P24639 denotes nexin A7 s
T14790 14-19 UMLS/C0443218 denotes xed w
T14791 92-99 UP/P00764 denotes ypsin a
T14793 103-112 UMLS/C1444656 denotes dicated,
T14794 180-183 UMLS/C0558276 denotes 10
T14796 180-183 UMLS/C0993613 denotes 10
T14803 131-141 UP/P20072 denotes nexin A7 s
T14806 92-99 UP/P24664 denotes ypsin a
T14807 92-99 UP/P19799 denotes ypsin a
T14811 3-8 UMLS/C1704653 denotes lls w
T14819 92-99 UP/P51588 denotes ypsin a
T14820 166-170 UMLS/C0057142 denotes in
T14825 131-141 UMLS/C1412427 denotes nexin A7 s
T14829 92-99 UP/P35050 denotes ypsin a
T14837 131-141 UP/P20073 denotes nexin A7 s
T14841 131-141 UP/Q4R5L5 denotes nexin A7 s
T14842 180-183 UMLS/C1551065 denotes 10
T14843 118-125 UMLS/C0038128 denotes ained w
T14849 180-183 UMLS/C0441233 denotes 10
T14850 62-74 UMLS/C0146951 denotes iton X-100,
T14854 25-41 UMLS/C0070066 denotes raformaldehyde,
T14859 142-150 UMLS/C1552740 denotes ecific m
T14869 92-99 UP/P00775 denotes ypsin a
T14873 3-8 UMLS/C0007634 denotes lls w
T14877 131-141 UMLS/C0103408 denotes nexin A7 s
T14878 92-99 UP/P35051 denotes ypsin a
T14882 3-8 UMLS/C1948049 denotes lls w
T14891 180-183 UMLS/C1704759 denotes 10
T14895 3-8 UMLS/C1136359 denotes lls w
T14901 180-183 UMLS/C0687760 denotes 10
T14902 174-178 UMLS/C1260957 denotes , ba
T14905 92-99 UP/Q59149 denotes ypsin a

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T14945 60-72 CHEBI:9750 denotes Triton X-100
T14946 90-97 PR:000027795 denotes trypsin
T14947 129-139 PR:000004080 denotes Annexin A7
T14948 162-166 CHEBI:51231 denotes DAPI