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PMC:1087847 / 1942-2646 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1249 0-8 NNS denotes Annexins
T1250 9-13 VBP denotes form
T1251 14-15 DT denotes a
T1252 16-22 NN denotes family
T1253 23-25 IN denotes of
T1254 26-38 RB denotes structurally
T1255 39-46 JJ denotes related
T1256 47-55 NN denotes proteins
T1257 55-57 , denotes ,
T1258 57-62 WDT denotes which
T1259 63-67 VBP denotes bind
T1260 68-70 IN denotes to
T1261 71-81 RB denotes negatively
T1262 82-89 VBN denotes charged
T1263 90-103 NNS denotes phospholipids
T1264 104-106 IN denotes in
T1265 107-108 DT denotes a
T1266 124-130 NN denotes manner
T1267 109-113 NN denotes Ca2+
T1268 114-123 JJ denotes dependent
T1269 113-114 HYPH denotes -
T1270 131-132 -LRB- denotes [
T1271 132-133 CD denotes 1
T1272 133-134 -RRB- denotes ]
T1273 134-135 . denotes .
T1274 135-304 sentence denotes They are characterized by a bipartite structure with a conserved C-terminal core domain and a unique N-terminal domain that varies in length and amino acid composition.
T1275 136-140 PRP denotes They
T1276 145-158 VBN denotes characterized
T1277 141-144 VBP denotes are
T1278 159-161 IN denotes by
T1279 162-163 DT denotes a
T1280 174-183 NN denotes structure
T1281 164-173 JJ denotes bipartite
T1282 184-188 IN denotes with
T1283 189-190 DT denotes a
T1284 217-223 NN denotes domain
T1285 191-200 VBN denotes conserved
T1286 201-202 NN denotes C
T1287 203-211 JJ denotes terminal
T1288 202-203 HYPH denotes -
T1289 212-216 NN denotes core
T1290 224-227 CC denotes and
T1291 228-229 DT denotes a
T1292 248-254 NN denotes domain
T1293 230-236 JJ denotes unique
T1294 237-238 NN denotes N
T1295 239-247 JJ denotes terminal
T1296 238-239 HYPH denotes -
T1297 255-259 WDT denotes that
T1298 260-266 VBZ denotes varies
T1299 267-269 IN denotes in
T1300 270-276 NN denotes length
T1301 277-280 CC denotes and
T1302 281-286 NN denotes amino
T1303 287-291 NN denotes acid
T1304 292-303 NN denotes composition
T1305 303-304 . denotes .
T1306 304-494 sentence denotes The C-terminal domain is formed by either a four- or eightfold repeat of approximately 70 amino acids, each repeat carrying a Ca2+-binding site, and is responsible for phospholipid binding.
T1307 305-308 DT denotes The
T1308 320-326 NN denotes domain
T1309 309-310 NN denotes C
T1310 311-319 JJ denotes terminal
T1311 310-311 HYPH denotes -
T1312 330-336 VBN denotes formed
T1313 327-329 VBZ denotes is
T1314 337-339 IN denotes by
T1315 340-346 CC denotes either
T1316 368-374 NN denotes repeat
T1317 347-348 DT denotes a
T1318 349-353 CD denotes four
T1319 353-354 HYPH denotes -
T1320 355-357 CC denotes or
T1321 358-367 JJ denotes eightfold
T1322 375-377 IN denotes of
T1323 378-391 RB denotes approximately
T1324 392-394 CD denotes 70
T1325 401-406 NNS denotes acids
T1326 395-400 NN denotes amino
T1327 406-408 , denotes ,
T1328 408-412 DT denotes each
T1329 413-419 NN denotes repeat
T1330 420-428 VBG denotes carrying
T1331 429-430 DT denotes a
T1332 444-448 NN denotes site
T1333 431-435 NN denotes Ca2+
T1334 435-436 HYPH denotes -
T1335 436-443 VBG denotes binding
T1336 448-450 , denotes ,
T1337 450-453 CC denotes and
T1338 454-456 VBZ denotes is
T1339 457-468 JJ denotes responsible
T1340 469-472 IN denotes for
T1341 473-485 NN denotes phospholipid
T1342 486-493 NN denotes binding
T1343 493-494 . denotes .
T1344 494-589 sentence denotes The N-terminal regions are thought to confer functional diversity to the annexin proteins [2].
T1345 495-498 DT denotes The
T1346 510-517 NNS denotes regions
T1347 499-500 NN denotes N
T1348 501-509 JJ denotes terminal
T1349 500-501 HYPH denotes -
T1350 522-529 VBN denotes thought
T1351 518-521 VBP denotes are
T1352 530-532 TO denotes to
T1353 533-539 VB denotes confer
T1354 540-550 JJ denotes functional
T1355 551-560 NN denotes diversity
T1356 561-563 IN denotes to
T1357 564-567 DT denotes the
T1358 576-584 NN denotes proteins
T1359 568-575 NN denotes annexin
T1360 585-586 -LRB- denotes [
T1361 586-587 CD denotes 2
T1362 587-588 -RRB- denotes ]
T1363 588-589 . denotes .
T1364 589-704 sentence denotes The biochemical features in vitro were analyzed extensively, but the in vivo functions of annexins remain unclear.
T1365 590-593 DT denotes The
T1366 606-614 NNS denotes features
T1367 594-605 JJ denotes biochemical
T1368 629-637 VBN denotes analyzed
T1369 615-617 FW denotes in
T1370 618-623 FW denotes vitro
T1371 624-628 VBD denotes were
T1372 638-649 RB denotes extensively
T1373 649-651 , denotes ,
T1374 651-654 CC denotes but
T1375 655-658 DT denotes the
T1376 667-676 NNS denotes functions
T1377 659-661 FW denotes in
T1378 662-666 FW denotes vivo
T1379 689-695 VBP denotes remain
T1380 677-679 IN denotes of
T1381 680-688 NNS denotes annexins
T1382 696-703 JJ denotes unclear
T1383 703-704 . denotes .
R324 T1249 T1250 nsubj Annexins,form
R325 T1251 T1252 det a,family
R326 T1252 T1250 dobj family,form
R327 T1253 T1252 prep of,family
R328 T1254 T1255 advmod structurally,related
R329 T1255 T1256 amod related,proteins
R330 T1256 T1253 pobj proteins,of
R331 T1257 T1256 punct ", ",proteins
R332 T1258 T1259 dep which,bind
R333 T1259 T1256 relcl bind,proteins
R334 T1260 T1259 prep to,bind
R335 T1261 T1262 advmod negatively,charged
R336 T1262 T1263 amod charged,phospholipids
R337 T1263 T1260 pobj phospholipids,to
R338 T1264 T1259 prep in,bind
R339 T1265 T1266 det a,manner
R340 T1266 T1264 pobj manner,in
R341 T1267 T1268 npadvmod Ca2+,dependent
R342 T1268 T1266 amod dependent,manner
R343 T1269 T1268 punct -,dependent
R344 T1270 T1271 punct [,1
R345 T1271 T1250 parataxis 1,form
R346 T1272 T1271 punct ],1
R347 T1273 T1250 punct .,form
R348 T1275 T1276 nsubjpass They,characterized
R349 T1277 T1276 auxpass are,characterized
R350 T1278 T1276 agent by,characterized
R351 T1279 T1280 det a,structure
R352 T1280 T1278 pobj structure,by
R353 T1281 T1280 amod bipartite,structure
R354 T1282 T1280 prep with,structure
R355 T1283 T1284 det a,domain
R356 T1284 T1282 pobj domain,with
R357 T1285 T1284 amod conserved,domain
R358 T1286 T1287 npadvmod C,terminal
R359 T1287 T1284 amod terminal,domain
R360 T1288 T1287 punct -,terminal
R361 T1289 T1284 compound core,domain
R362 T1290 T1284 cc and,domain
R363 T1291 T1292 det a,domain
R364 T1292 T1284 conj domain,domain
R365 T1293 T1292 amod unique,domain
R366 T1294 T1295 npadvmod N,terminal
R367 T1295 T1292 amod terminal,domain
R368 T1296 T1295 punct -,terminal
R369 T1297 T1298 dep that,varies
R370 T1298 T1292 relcl varies,domain
R371 T1299 T1298 prep in,varies
R372 T1300 T1299 pobj length,in
R373 T1301 T1300 cc and,length
R374 T1302 T1303 compound amino,acid
R375 T1303 T1304 compound acid,composition
R376 T1304 T1300 conj composition,length
R377 T1305 T1276 punct .,characterized
R378 T1307 T1308 det The,domain
R379 T1308 T1312 nsubjpass domain,formed
R380 T1309 T1310 npadvmod C,terminal
R381 T1310 T1308 amod terminal,domain
R382 T1311 T1310 punct -,terminal
R383 T1313 T1312 auxpass is,formed
R384 T1314 T1312 prep by,formed
R385 T1315 T1316 preconj either,repeat
R386 T1316 T1314 pobj repeat,by
R387 T1317 T1316 det a,repeat
R388 T1318 T1316 nummod four,repeat
R389 T1319 T1318 punct -,four
R390 T1320 T1318 cc or,four
R391 T1321 T1318 conj eightfold,four
R392 T1322 T1316 prep of,repeat
R393 T1323 T1324 advmod approximately,70
R394 T1324 T1325 nummod 70,acids
R395 T1325 T1322 pobj acids,of
R396 T1326 T1325 compound amino,acids
R397 T1327 T1316 punct ", ",repeat
R398 T1328 T1329 det each,repeat
R399 T1329 T1316 npadvmod repeat,repeat
R400 T1330 T1329 acl carrying,repeat
R401 T1331 T1332 det a,site
R402 T1332 T1330 dobj site,carrying
R403 T1333 T1332 nmod Ca2+,site
R404 T1334 T1333 punct -,Ca2+
R405 T1335 T1333 amod binding,Ca2+
R406 T1336 T1312 punct ", ",formed
R407 T1337 T1312 cc and,formed
R408 T1338 T1312 conj is,formed
R409 T1339 T1338 acomp responsible,is
R410 T1340 T1339 prep for,responsible
R411 T1341 T1342 compound phospholipid,binding
R412 T1342 T1340 pobj binding,for
R413 T1343 T1312 punct .,formed
R414 T1345 T1346 det The,regions
R415 T1346 T1350 nsubjpass regions,thought
R416 T1347 T1348 npadvmod N,terminal
R417 T1348 T1346 amod terminal,regions
R418 T1349 T1348 punct -,terminal
R419 T1351 T1350 auxpass are,thought
R420 T1352 T1353 aux to,confer
R421 T1353 T1350 xcomp confer,thought
R422 T1354 T1355 amod functional,diversity
R423 T1355 T1353 dobj diversity,confer
R424 T1356 T1353 prep to,confer
R425 T1357 T1358 det the,proteins
R426 T1358 T1356 pobj proteins,to
R427 T1359 T1358 compound annexin,proteins
R428 T1360 T1361 punct [,2
R429 T1361 T1350 parataxis 2,thought
R430 T1362 T1361 punct ],2
R431 T1363 T1350 punct .,thought
R432 T1365 T1366 det The,features
R433 T1366 T1368 nsubjpass features,analyzed
R434 T1367 T1366 amod biochemical,features
R435 T1369 T1370 advmod in,vitro
R436 T1370 T1366 advmod vitro,features
R437 T1371 T1368 auxpass were,analyzed
R438 T1372 T1368 advmod extensively,analyzed
R439 T1373 T1368 punct ", ",analyzed
R440 T1374 T1368 cc but,analyzed
R441 T1375 T1376 det the,functions
R442 T1376 T1379 nsubj functions,remain
R443 T1377 T1378 advmod in,vivo
R444 T1378 T1376 amod vivo,functions
R445 T1379 T1368 conj remain,analyzed
R446 T1380 T1376 prep of,functions
R447 T1381 T1380 pobj annexins,of
R448 T1382 T1379 acomp unclear,remain
R449 T1383 T1379 punct .,remain

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1152 47-55 CHEBI_PR_EXT:protein denotes proteins
T1153 63-67 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T1154 71-103 CHEBI:62643 denotes negatively charged phospholipids
T1155 109-113 CHEBI:29108 denotes Ca2+
T1156 191-200 SO_EXT:biological_conservation_process_or_quality denotes conserved
T1157 201-211 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T1158 217-223 SO_EXT:0000417 denotes domain
T1159 237-247 CHEBI_SO_EXT:N_terminus_or_N_terminal_region denotes N-terminal
T1160 248-254 SO_EXT:0000417 denotes domain
T1161 281-291 CHEBI_SO_EXT:amino_acid denotes amino acid
T1162 309-319 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminal
T1163 320-326 SO_EXT:0000417 denotes domain
T1164 368-374 SO_EXT:sequence_repeat_unit_or_region denotes repeat
T1165 395-406 CHEBI_SO_EXT:amino_acid denotes amino acids
T1166 413-419 SO_EXT:sequence_repeat_unit_or_region denotes repeat
T1167 431-435 CHEBI:29108 denotes Ca2+
T1168 436-443 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T1169 436-448 SO_EXT:0000409 denotes binding site
T1170 473-485 CHEBI:16247 denotes phospholipid
T1171 486-493 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T1172 499-509 CHEBI_SO_EXT:N_terminus_or_N_terminal_region denotes N-terminal
T1173 576-584 CHEBI_PR_EXT:protein denotes proteins
T1174 594-605 CHEBI_EXT:biochemical denotes biochemical

biosemtest

Id Subject Object Predicate Lexical cue
T680 270-276 UMLS/C1444754 denotes length
T681 82-89 UMLS/C1548280 denotes charged
T683 63-67 UMLS/C2349209 denotes bind
T684 63-67 UMLS/C1145667 denotes bind
T685 16-22 UMLS/C1563343 denotes family
T686 212-216 UMLS/C1820374 denotes core
T688 39-46 UMLS/C0445223 denotes related
T692 82-89 UMLS/C0007961 denotes charged
T702 473-493 UMLS/C1148642 denotes phospholipid binding
T709 68-70 UMLS/C0319022 denotes to
T710 530-532 UMLS/C0319022 denotes to
T711 561-563 UMLS/C0319022 denotes to
T716 651-654 UMLS/C0005341 denotes but
T732 212-216 UMLS/C0444669 denotes core
T749 39-46 UMLS/C0439849 denotes related
T764 63-67 UMLS/C1167622 denotes bind
T767 281-291 UMLS/C0002520 denotes amino acid
T768 395-406 UMLS/C0002520 denotes amino acids
T769 47-55 UMLS/C0033684 denotes proteins
T770 576-584 UMLS/C0033684 denotes proteins
T773 510-517 UMLS/C0205147 denotes regions
T774 90-103 UMLS/C0031676 denotes phospholipids
T784 540-550 UMLS/C2700217 denotes functional
T786 212-216 UMLS/C1882467 denotes core
T797 82-89 UMLS/C1706211 denotes charged
T800 9-13 UMLS/C0348078 denotes form
T801 330-336 UMLS/C0348078 denotes formed
T813 420-428 UMLS/C0206243 denotes carrying
T814 9-13 UMLS/C0376315 denotes form
T815 330-336 UMLS/C0376315 denotes formed
T816 662-666 UMLS/C1515655 denotes vivo
T817 457-468 UMLS/C1273518 denotes responsible
T818 109-113 UMLS/C0596235 denotes Ca2+
T819 431-435 UMLS/C0596235 denotes Ca2+
T822 0-8 UMLS/C0065042 denotes Annexins
T823 568-575 UMLS/C0065042 denotes annexin
T824 680-688 UMLS/C0065042 denotes annexins
T835 16-22 UMLS/C0015576 denotes family
T837 551-560 UMLS/C1880371 denotes diversity
T855 201-211 UMLS/C1707271 denotes C-terminal
T856 309-319 UMLS/C1707271 denotes C-terminal
T857 420-428 UMLS/C0699809 denotes carrying
T868 368-374 UMLS/C1547730 denotes repeat
T869 413-419 UMLS/C1547730 denotes repeat
T871 436-448 UMLS/C0682969 denotes binding site
T873 510-517 UMLS/C0017446 denotes regions
T874 217-223 UMLS/C1880389 denotes domain
T875 248-254 UMLS/C1880389 denotes domain
T876 320-326 UMLS/C1880389 denotes domain
T879 217-223 UMLS/C1514562 denotes domain
T880 248-254 UMLS/C1514562 denotes domain
T881 320-326 UMLS/C1514562 denotes domain
T882 510-517 UMLS/C1514562 denotes regions
T888 212-216 UMLS/C1706352 denotes core
T889 368-374 UMLS/C0205341 denotes repeat
T890 413-419 UMLS/C0205341 denotes repeat
T905 217-223 UMLS/C1883221 denotes domain
T906 248-254 UMLS/C1883221 denotes domain
T907 320-326 UMLS/C1883221 denotes domain
T909 292-303 UMLS/C1555710 denotes composition
T913 667-676 UMLS/C1705273 denotes functions
T914 145-158 UMLS/C1880022 denotes characterized
T915 292-303 UMLS/C0486616 denotes composition
T917 217-223 UMLS/C1883204 denotes domain
T918 248-254 UMLS/C1883204 denotes domain
T919 320-326 UMLS/C1883204 denotes domain
T929 174-183 UMLS/C0678594 denotes structure
T938 63-67 UMLS/C1689898 denotes bind
T946 9-13 UMLS/C0205431 denotes form
T947 330-336 UMLS/C0205431 denotes formed
T949 9-13 UMLS/C1522492 denotes form
T950 330-336 UMLS/C1522492 denotes formed
T952 114-123 UMLS/C1701901 denotes dependent
T953 618-623 UMLS/C1533691 denotes vitro
T957 349-354 UMLS/C0205450 denotes four-
T962 594-605 UMLS/C0205474 denotes biochemical
T963 540-550 UMLS/C0542341 denotes functional
T964 667-676 UMLS/C0542341 denotes functions
T965 16-22 UMLS/C2700055 denotes family
T970 230-236 UMLS/C1710548 denotes unique
T974 82-89 UMLS/C1546426 denotes charged
T991 436-448 UMLS/C0005456 denotes binding site
T995 689-695 UMLS/C1527428 denotes remain
T1018 629-637 UMLS/C0936012 denotes analyzed
T1021 540-550 UMLS/C0205245 denotes functional
T1022 16-22 UMLS/C1552262 denotes family
T1023 114-123 UMLS/C0851827 denotes dependent
T1025 63-67 UMLS/C0243122 denotes bind
T1027 368-374 UMLS/C1705914 denotes repeat
T1028 413-419 UMLS/C1705914 denotes repeat
T1031 260-266 UMLS/C1548673 denotes varies
T1035 39-46 UMLS/C1704787 denotes related
T1045 9-13 UMLS/C0013058 denotes form
T1046 330-336 UMLS/C0013058 denotes formed
T1054 16-22 UMLS/C1555907 denotes family
T1055 212-216 UMLS/C0008489 denotes core
T1057 618-623 UMLS/C0021135 denotes vitro
T1066 39-46 UMLS/C0163712 denotes related
T1078 522-529 UMLS/C0039869 denotes thought
T1080 16-22 UMLS/C1704727 denotes family
T1081 378-391 UMLS/C0332232 denotes approximately

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1084 71-103 CHEBI:62643 denotes negatively charged phospholipids
T1085 109-113 CHEBI:29108 denotes Ca2+
T1086 217-223 SO:0000417 denotes domain
T1087 248-254 SO:0000417 denotes domain
T1088 320-326 SO:0000417 denotes domain
T1089 431-435 CHEBI:29108 denotes Ca2+
T1090 436-448 SO:0000409 denotes binding site
T1091 473-485 CHEBI:16247 denotes phospholipid