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PMC:1087847 / 19312-20143 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5148 0-3 DT denotes The
T5149 12-24 NN denotes localisation
T5150 4-11 JJ denotes nuclear
T5151 128-136 VBN denotes detected
T5152 25-27 IN denotes of
T5153 28-35 NN denotes Annexin
T5154 36-38 NN denotes A7
T5155 39-41 IN denotes in
T5156 42-46 NNS denotes mice
T5157 47-55 VBN denotes observed
T5158 56-58 IN denotes in
T5159 59-67 JJ denotes immature
T5160 68-73 NNS denotes cells
T5161 74-76 IN denotes at
T5162 77-80 NN denotes E16
T5163 81-84 CC denotes and
T5164 85-99 VBN denotes differentiated
T5165 106-113 NNS denotes neurons
T5166 100-105 JJ denotes adult
T5167 114-119 MD denotes could
T5168 120-122 VB denotes be
T5169 123-127 RB denotes only
T5170 137-139 IN denotes as
T5171 140-141 DT denotes a
T5172 149-155 NN denotes signal
T5173 142-148 JJ denotes strong
T5174 156-160 WRB denotes when
T5175 185-196 VBN denotes pre-treated
T5176 161-164 DT denotes the
T5177 171-179 NNS denotes sections
T5178 165-170 NN denotes brain
T5179 180-184 VBD denotes were
T5180 197-201 IN denotes with
T5181 202-209 NN denotes trypsin
T5182 210-216 IN denotes before
T5183 217-225 NN denotes antibody
T5184 226-234 NN denotes staining
T5185 234-235 . denotes .
T5186 235-341 sentence denotes This procedure is thought to allow the antibodies to access epitopes masked by the formaldehyde fixation.
T5187 236-240 DT denotes This
T5188 241-250 NN denotes procedure
T5189 254-261 VBN denotes thought
T5190 251-253 VBZ denotes is
T5191 262-264 TO denotes to
T5192 265-270 VB denotes allow
T5193 271-274 DT denotes the
T5194 275-285 NNS denotes antibodies
T5195 289-295 VB denotes access
T5196 286-288 TO denotes to
T5197 296-304 NNS denotes epitopes
T5198 305-311 VBN denotes masked
T5199 312-314 IN denotes by
T5200 315-318 DT denotes the
T5201 332-340 NN denotes fixation
T5202 319-331 NN denotes formaldehyde
T5203 340-341 . denotes .
T5204 341-406 sentence denotes Methanol fixation of cultured cells led to inconsistent results.
T5205 342-350 NN denotes Methanol
T5206 351-359 NN denotes fixation
T5207 378-381 VBD denotes led
T5208 360-362 IN denotes of
T5209 363-371 VBN denotes cultured
T5210 372-377 NNS denotes cells
T5211 382-384 IN denotes to
T5212 385-397 JJ denotes inconsistent
T5213 398-405 NNS denotes results
T5214 405-406 . denotes .
T5215 406-617 sentence denotes Antigen retrieval in formalin-fixed and paraffin-embedded tissue sections employs various heating or proteolytic pre-treatment methods [[15-17]; Ein Handbuch für die Histologie, dianova GmbH, Hamburg, Germany].
T5216 407-414 NN denotes Antigen
T5217 415-424 NN denotes retrieval
T5218 481-488 VBZ denotes employs
T5219 425-427 IN denotes in
T5220 428-436 NN denotes formalin
T5221 437-442 VBN denotes fixed
T5222 436-437 HYPH denotes -
T5223 472-480 NNS denotes sections
T5224 443-446 CC denotes and
T5225 447-455 NN denotes paraffin
T5226 456-464 VBN denotes embedded
T5227 455-456 HYPH denotes -
T5228 465-471 NN denotes tissue
T5229 489-496 JJ denotes various
T5230 534-541 NNS denotes methods
T5231 497-504 NN denotes heating
T5232 505-507 CC denotes or
T5233 508-519 JJ denotes proteolytic
T5234 520-533 NN denotes pre-treatment
T5235 542-543 -LRB- denotes [
T5236 543-544 -LRB- denotes [
T5237 544-546 CD denotes 15
T5238 546-547 SYM denotes -
T5239 547-549 CD denotes 17
T5240 549-550 -RRB- denotes ]
T5241 550-551 : denotes ;
T5242 552-555 NNP denotes Ein
T5243 556-564 NNP denotes Handbuch
T5244 565-568 NNP denotes für
T5245 569-572 NNP denotes die
T5246 573-583 NNP denotes Histologie
T5247 583-585 , denotes ,
T5248 585-592 NNP denotes dianova
T5249 593-597 NNP denotes GmbH
T5250 597-599 , denotes ,
T5251 599-606 NNP denotes Hamburg
T5252 606-608 , denotes ,
T5253 608-615 NNP denotes Germany
T5254 615-616 -RRB- denotes ]
T5255 616-617 . denotes .
T5256 617-752 sentence denotes These methods can result in moderate or strong specific antibody staining, but the detectability of other antigens might be decreased.
T5257 618-623 DT denotes These
T5258 624-631 NNS denotes methods
T5259 636-642 VB denotes result
T5260 632-635 MD denotes can
T5261 643-645 IN denotes in
T5262 646-654 JJ denotes moderate
T5263 683-691 NN denotes staining
T5264 655-657 CC denotes or
T5265 658-664 JJ denotes strong
T5266 665-673 JJ denotes specific
T5267 674-682 NN denotes antibody
T5268 691-693 , denotes ,
T5269 693-696 CC denotes but
T5270 697-700 DT denotes the
T5271 701-714 NN denotes detectability
T5272 742-751 VBN denotes decreased
T5273 715-717 IN denotes of
T5274 718-723 JJ denotes other
T5275 724-732 NNS denotes antigens
T5276 733-738 MD denotes might
T5277 739-741 VB denotes be
T5278 751-752 . denotes .
T5279 752-831 sentence denotes Moreover, the optimal pre-treatment has to be individualised for each antigen.
T5280 753-761 RB denotes Moreover
T5281 789-792 VBZ denotes has
T5282 761-763 , denotes ,
T5283 763-766 DT denotes the
T5284 775-788 NN denotes pre-treatment
T5285 767-774 JJ denotes optimal
T5286 793-795 TO denotes to
T5287 799-813 VBN denotes individualised
T5288 796-798 VB denotes be
T5289 814-817 IN denotes for
T5290 818-822 DT denotes each
T5291 823-830 NN denotes antigen
T5292 830-831 . denotes .
R2190 T5148 T5149 det The,localisation
R2191 T5149 T5151 nsubjpass localisation,detected
R2192 T5150 T5149 amod nuclear,localisation
R2193 T5152 T5149 prep of,localisation
R2194 T5153 T5154 compound Annexin,A7
R2195 T5154 T5152 pobj A7,of
R2196 T5155 T5149 prep in,localisation
R2197 T5156 T5155 pobj mice,in
R2198 T5157 T5149 acl observed,localisation
R2199 T5158 T5157 prep in,observed
R2200 T5159 T5160 amod immature,cells
R2201 T5160 T5158 pobj cells,in
R2202 T5161 T5160 prep at,cells
R2203 T5162 T5161 pobj E16,at
R2204 T5163 T5160 cc and,cells
R2205 T5164 T5165 amod differentiated,neurons
R2206 T5165 T5160 conj neurons,cells
R2207 T5166 T5165 amod adult,neurons
R2208 T5167 T5151 aux could,detected
R2209 T5168 T5151 auxpass be,detected
R2210 T5169 T5151 advmod only,detected
R2211 T5170 T5151 prep as,detected
R2212 T5171 T5172 det a,signal
R2213 T5172 T5170 pobj signal,as
R2214 T5173 T5172 amod strong,signal
R2215 T5174 T5175 advmod when,pre-treated
R2216 T5175 T5151 advcl pre-treated,detected
R2217 T5176 T5177 det the,sections
R2218 T5177 T5175 nsubjpass sections,pre-treated
R2219 T5178 T5177 compound brain,sections
R2220 T5179 T5175 auxpass were,pre-treated
R2221 T5180 T5175 prep with,pre-treated
R2222 T5181 T5180 pobj trypsin,with
R2223 T5182 T5175 prep before,pre-treated
R2224 T5183 T5184 compound antibody,staining
R2225 T5184 T5182 pobj staining,before
R2226 T5185 T5151 punct .,detected
R2227 T5187 T5188 det This,procedure
R2228 T5188 T5189 nsubjpass procedure,thought
R2229 T5190 T5189 auxpass is,thought
R2230 T5191 T5192 aux to,allow
R2231 T5192 T5189 xcomp allow,thought
R2232 T5193 T5194 det the,antibodies
R2233 T5194 T5195 nsubj antibodies,access
R2234 T5195 T5192 ccomp access,allow
R2235 T5196 T5195 aux to,access
R2236 T5197 T5195 dobj epitopes,access
R2237 T5198 T5197 acl masked,epitopes
R2238 T5199 T5198 agent by,masked
R2239 T5200 T5201 det the,fixation
R2240 T5201 T5199 pobj fixation,by
R2241 T5202 T5201 compound formaldehyde,fixation
R2242 T5203 T5189 punct .,thought
R2243 T5205 T5206 compound Methanol,fixation
R2244 T5206 T5207 nsubj fixation,led
R2245 T5208 T5206 prep of,fixation
R2246 T5209 T5210 amod cultured,cells
R2247 T5210 T5208 pobj cells,of
R2248 T5211 T5207 prep to,led
R2249 T5212 T5213 amod inconsistent,results
R2250 T5213 T5211 pobj results,to
R2251 T5214 T5207 punct .,led
R2252 T5216 T5217 compound Antigen,retrieval
R2253 T5217 T5218 nsubj retrieval,employs
R2254 T5219 T5217 prep in,retrieval
R2255 T5220 T5221 npadvmod formalin,fixed
R2256 T5221 T5223 amod fixed,sections
R2257 T5222 T5221 punct -,fixed
R2258 T5223 T5219 pobj sections,in
R2259 T5224 T5221 cc and,fixed
R2260 T5225 T5226 npadvmod paraffin,embedded
R2261 T5226 T5221 conj embedded,fixed
R2262 T5227 T5226 punct -,embedded
R2263 T5228 T5223 compound tissue,sections
R2264 T5229 T5230 amod various,methods
R2265 T5230 T5218 dobj methods,employs
R2266 T5231 T5230 nmod heating,methods
R2267 T5232 T5231 cc or,heating
R2268 T5233 T5234 amod proteolytic,pre-treatment
R2269 T5234 T5231 conj pre-treatment,heating
R2270 T5235 T5218 punct [,employs
R2271 T5236 T5237 punct [,15
R2272 T5237 T5218 parataxis 15,employs
R2273 T5238 T5239 punct -,17
R2274 T5239 T5237 prep 17,15
R2275 T5240 T5237 punct ],15
R2276 T5241 T5242 punct ;,Ein
R2277 T5242 T5218 meta Ein,employs
R2278 T5243 T5242 nmod Handbuch,Ein
R2279 T5244 T5242 nmod für,Ein
R2280 T5245 T5242 nmod die,Ein
R2281 T5246 T5242 nmod Histologie,Ein
R2282 T5247 T5242 punct ", ",Ein
R2283 T5248 T5242 nmod dianova,Ein
R2284 T5249 T5242 nmod GmbH,Ein
R2285 T5250 T5242 punct ", ",Ein
R2286 T5251 T5242 nmod Hamburg,Ein
R2287 T5252 T5242 punct ", ",Ein
R2288 T5253 T5242 nmod Germany,Ein
R2289 T5254 T5242 punct ],Ein
R2290 T5255 T5218 punct .,employs
R2291 T5257 T5258 det These,methods
R2292 T5258 T5259 nsubj methods,result
R2293 T5260 T5259 aux can,result
R2294 T5261 T5259 prep in,result
R2295 T5262 T5263 amod moderate,staining
R2296 T5263 T5261 pobj staining,in
R2297 T5264 T5262 cc or,moderate
R2298 T5265 T5262 conj strong,moderate
R2299 T5266 T5263 amod specific,staining
R2300 T5267 T5263 compound antibody,staining
R2301 T5268 T5259 punct ", ",result
R2302 T5269 T5259 cc but,result
R2303 T5270 T5271 det the,detectability
R2304 T5271 T5272 nsubjpass detectability,decreased
R2305 T5272 T5259 conj decreased,result
R2306 T5273 T5271 prep of,detectability
R2307 T5274 T5275 amod other,antigens
R2308 T5275 T5273 pobj antigens,of
R2309 T5276 T5272 aux might,decreased
R2310 T5277 T5272 auxpass be,decreased
R2311 T5278 T5272 punct .,decreased
R2312 T5280 T5281 advmod Moreover,has
R2313 T5282 T5281 punct ", ",has
R2314 T5283 T5284 det the,pre-treatment
R2315 T5284 T5281 nsubj pre-treatment,has
R2316 T5285 T5284 amod optimal,pre-treatment
R2317 T5286 T5287 aux to,individualised
R2318 T5287 T5281 xcomp individualised,has
R2319 T5288 T5287 auxpass be,individualised
R2320 T5289 T5287 prep for,individualised
R2321 T5290 T5291 det each,antigen
R2322 T5291 T5289 pobj antigen,for
R2323 T5292 T5281 punct .,has

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T5064 4-11 GO:0005634 denotes nuclear
T5065 12-24 GO_PATO_EXT:biological_localization_process_or_quality denotes localisation
T5066 28-38 PR_EXT:000004080 denotes Annexin A7
T5067 42-46 NCBITaxon:10088 denotes mice
T5068 68-73 CL_GO_EXT:cell denotes cells
T5069 85-99 GO_PATO_RO_EXT:developmental_differentiation_process_or_quality denotes differentiated
T5070 100-105 UBERON:0007023 denotes adult
T5071 106-113 CL:0000540 denotes neurons
T5072 165-170 UBERON:0000955 denotes brain
T5073 202-209 PR_EXT:000027795 denotes trypsin
T5074 217-225 GO:0042571 denotes antibody
T5075 275-285 GO:0042571 denotes antibodies
T5076 296-304 CHEBI_SO_EXT:epitope denotes epitopes
T5077 319-331 CHEBI:16842 denotes formaldehyde
T5078 342-350 CHEBI:17790 denotes Methanol
T5079 363-377 CL:0000010 denotes cultured cells
T5080 372-377 CL_GO_EXT:cell denotes cells
T5081 407-414 CHEBI_EXT:59132 denotes Antigen
T5082 428-436 CHEBI:16842 denotes formalin
T5083 465-471 UBERON:0000479 denotes tissue
T5084 508-519 GO:0006508 denotes proteolytic
T5085 674-682 GO:0042571 denotes antibody
T5086 724-732 CHEBI_EXT:59132 denotes antigens
T5087 823-830 CHEBI_EXT:59132 denotes antigen

biosemtest

Id Subject Object Predicate Lexical cue
T4626 202-209 UP/P00761 denotes trypsin
T4633 534-541 UMLS/C0025663 denotes methods
T4634 625-632 UMLS/C0025663 denotes ethods
T4635 241-250 UMLS/C0025664 denotes procedure
T4636 534-541 UMLS/C0025664 denotes methods
T4637 625-632 UMLS/C0025664 denotes ethods
T4639 226-234 UMLS/C1704680 denotes staining
T4640 684-692 UMLS/C1704680 denotes taining,
T4643 77-80 UMLS/C1442753 denotes E16
T4644 165-170 UMLS/C0006104 denotes brain
T4646 647-655 UMLS/C0205081 denotes oderate
T4647 262-264 UMLS/C0319022 denotes to
T4648 286-288 UMLS/C0319022 denotes to
T4649 382-384 UMLS/C0319022 denotes to
T4650 794-796 UMLS/C0319022 denotes o
T4655 694-697 UMLS/C0005341 denotes ut
T4657 171-179 UMLS/C1705191 denotes sections
T4659 332-340 UMLS/C1522662 denotes fixation
T4660 351-359 UMLS/C1522662 denotes fixation
T4661 265-270 UMLS/C0683607 denotes allow
T4662 743-752 UMLS/C0392756 denotes ecreased.
T4666 202-209 UP/P35049 denotes trypsin
T4667 165-170 UMLS/C0006111 denotes brain
T4674 28-38 UP/Q07076 denotes Annexin A7
T4679 202-209 UP/P81071 denotes trypsin
T4680 415-424 UMLS/C1514918 denotes retrieval
T4681 202-209 UP/P35034 denotes trypsin
T4682 123-127 UMLS/C0205171 denotes only
T4684 241-250 UMLS/C0184661 denotes procedure
T4686 28-38 UP/P24639 denotes Annexin A7
T4693 719-724 UMLS/C1955473 denotes ther
T4694 171-179 UMLS/C0205155 denotes sections
T4703 28-38 UP/P20072 denotes Annexin A7
T4709 217-225 UMLS/C0021027 denotes antibody
T4710 275-285 UMLS/C0021027 denotes antibodies
T4712 719-724 UMLS/C1556044 denotes ther
T4713 202-209 UP/P24664 denotes trypsin
T4714 202-209 UP/P19799 denotes trypsin
T4719 100-105 UMLS/C0001675 denotes adult
T4721 647-655 UMLS/C1881878 denotes oderate
T4722 609-616 UMLS/C0017480 denotes ermany]
T4724 202-209 UP/P51588 denotes trypsin
T4732 666-683 UMLS/C0443640 denotes pecific antibody
T4733 743-752 UMLS/C0547047 denotes ecreased.
T4735 305-311 UMLS/C1555580 denotes masked
T4736 202-209 UP/P35050 denotes trypsin
T4747 241-250 UMLS/C1948041 denotes procedure
T4754 305-311 UMLS/C0024861 denotes masked
T4755 319-331 UMLS/C0016564 denotes formaldehyde
T4756 570-573 UMLS/C1306577 denotes ie
T4757 647-655 UMLS/C1547226 denotes oderate
T4758 12-24 UMLS/C0475264 denotes localisation
T4759 398-405 UMLS/C1280519 denotes results
T4760 637-643 UMLS/C1280519 denotes esult
T4761 202-209 UP/P00775 denotes trypsin
T4763 28-38 UMLS/C0103408 denotes Annexin A7
T4768 202-209 UP/P35051 denotes trypsin
T4769 128-136 UMLS/C1511790 denotes detected
T4786 734-739 UMLS/C0454788 denotes ight
T4787 85-99 UMLS/C0205615 denotes differentiated
T4789 289-295 UMLS/C1554204 denotes access
T4792 106-113 UMLS/C0027882 denotes neurons
T4793 171-179 UMLS/C1552923 denotes sections
T4796 171-179 UMLS/C1552924 denotes sections
T4798 202-209 UP/P23916 denotes trypsin
T4803 289-295 UMLS/C0444454 denotes access
T4804 142-148 UMLS/C0442821 denotes strong
T4805 659-665 UMLS/C0442821 denotes trong
T4806 497-504 UMLS/C0018837 denotes heating
T4808 28-38 UP/Q92125 denotes Annexin A7
T4813 385-397 UMLS/C0442809 denotes inconsistent
T4819 332-340 UMLS/C0185023 denotes fixation
T4820 351-359 UMLS/C0185023 denotes fixation
T4821 743-752 UMLS/C0442797 denotes ecreased.
T4822 202-209 UP/P35048 denotes trypsin
T4828 790-793 UMLS/C2348947 denotes as
T4830 241-250 UMLS/C0945766 denotes procedure
T4831 202-209 UP/P83348 denotes trypsin
T4832 217-225 UMLS/C1621287 denotes antibody
T4833 275-285 UMLS/C1621287 denotes antibodies
T4837 481-488 UMLS/C0557351 denotes employs
T4838 165-170 UMLS/C1269537 denotes brain
T4840 342-350 UMLS/C0001963 denotes Methanol
T4841 465-480 UMLS/C2316368 denotes tissue sections
T4842 12-24 UMLS/C1744691 denotes localisation
T4843 202-209 UP/O97399 denotes trypsin
T4845 171-179 UMLS/C1552858 denotes sections
T4848 202-209 UMLS/C0041236 denotes trypsin
T4849 47-55 UMLS/C1441672 denotes observed
T4854 226-234 UMLS/C0487602 denotes staining
T4855 684-692 UMLS/C0487602 denotes taining,
T4860 4-11 UMLS/C0521447 denotes nuclear
T4861 114-119 UMLS/C0006823 denotes could
T4862 633-636 UMLS/C0006823 denotes an
T4866 202-209 UP/P00764 denotes trypsin
T4867 149-155 UMLS/C0037083 denotes signal
T4868 647-655 UMLS/C0694627 denotes oderate
T4870 171-179 UMLS/C1522472 denotes sections
T4872 332-340 UMLS/C0728733 denotes fixation
T4873 351-359 UMLS/C0728733 denotes fixation
T4875 534-541 UMLS/C0449851 denotes methods
T4876 625-632 UMLS/C0449851 denotes ethods
T4877 114-119 UMLS/C0344312 denotes could
T4878 633-636 UMLS/C0344312 denotes an
T4891 171-179 UMLS/C0700320 denotes sections
T4894 28-38 UMLS/C1412427 denotes Annexin A7
T4900 743-752 UMLS/C0205216 denotes ecreased.
T4904 241-250 UMLS/C2700391 denotes procedure
T4905 481-488 UMLS/C1274022 denotes employs
T4907 28-38 UP/Q4R5L5 denotes Annexin A7
T4913 28-38 UP/P20073 denotes Annexin A7
T4919 226-234 UMLS/C0038128 denotes staining
T4920 684-692 UMLS/C0038128 denotes taining,
T4924 128-136 UMLS/C0442726 denotes detected
T4927 149-155 UMLS/C1710082 denotes signal
T4928 398-405 UMLS/C0332294 denotes results
T4929 637-643 UMLS/C0332294 denotes esult
T4930 398-405 UMLS/C1274040 denotes results
T4931 637-643 UMLS/C1274040 denotes esult
T4943 363-377 UMLS/C0007635 denotes cultured cells
T4950 241-250 UMLS/C1546467 denotes procedure
T4951 570-573 UMLS/C1546956 denotes ie
T4955 398-405 UMLS/C1546471 denotes results
T4956 637-643 UMLS/C1546471 denotes esult
T4958 734-739 UMLS/C0337876 denotes ight
T4961 800-814 UMLS/C1881197 denotes ndividualised
T4963 217-225 UMLS/C0003241 denotes antibody
T4964 275-285 UMLS/C0003241 denotes antibodies
T4966 100-105 UMLS/C1706450 denotes adult
T4967 768-775 UMLS/C2698651 denotes ptimal
T4969 363-377 UMLS/C0007585 denotes cultured cells
T4970 171-179 UMLS/C1551341 denotes sections
T4972 85-99 UMLS/C0007589 denotes differentiated
T4973 296-304 UMLS/C0003316 denotes epitopes
T4978 59-73 UMLS/C2708700 denotes immature cells
T4979 407-414 UMLS/C0003320 denotes Antigen
T4980 725-733 UMLS/C0003320 denotes ntigens
T4981 824-831 UMLS/C0003320 denotes ntigen.
T4982 202-209 UP/Q59149 denotes trypsin
T4985 508-519 UMLS/C0597304 denotes proteolytic
T4987 254-261 UMLS/C0039869 denotes thought
T4988 123-127 UMLS/C1720467 denotes only
T4990 236-240 UMLS/C0323983 denotes This
T4991 497-504 UMLS/C0018851 denotes heating

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T5002 4-11 GO:0005634 denotes nuclear
T5003 28-38 PR:000004080 denotes Annexin A7
T5004 42-46 NCBITaxon:10088 denotes mice
T5005 100-105 UBERON:0007023 denotes adult
T5006 106-113 CL:0000540 denotes neurons
T5007 165-170 UBERON:0000955 denotes brain
T5008 202-209 PR:000027795 denotes trypsin
T5009 217-225 GO:0042571 denotes antibody
T5010 275-285 GO:0042571 denotes antibodies
T5011 319-331 CHEBI:16842 denotes formaldehyde
T5012 342-350 CHEBI:17790 denotes Methanol
T5013 363-377 CL:0000010 denotes cultured cells
T5014 407-414 CHEBI:59132 denotes Antigen
T5015 428-436 CHEBI:16842 denotes formalin
T5016 465-471 UBERON:0000479 denotes tissue
T5017 508-519 GO:0006508 denotes proteolytic
T5018 674-682 GO:0042571 denotes antibody
T5019 724-732 CHEBI:59132 denotes antigens
T5020 823-830 CHEBI:59132 denotes antigen