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PMC:1084331 / 6487-7752 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T3622 0-2 PRP denotes We
T3623 9-16 VBD denotes defined
T3624 3-8 RB denotes first
T3625 17-19 DT denotes an
T3626 38-47 NN denotes regulator
T3627 20-23 NN denotes ETS
T3628 24-37 NN denotes transcription
T3629 48-52 WDT denotes that
T3630 53-55 VBZ denotes is
T3631 56-60 JJ denotes able
T3632 61-63 TO denotes to
T3633 64-71 VB denotes replace
T3634 72-75 DT denotes the
T3635 76-84 NN denotes function
T3636 85-87 IN denotes of
T3637 88-92 NN denotes Er81
T3638 93-99 IN denotes within
T3639 100-114 JJ denotes proprioceptive
T3640 115-124 NNS denotes afferents
T3641 125-127 TO denotes to
T3642 128-134 VB denotes direct
T3643 135-146 NNS denotes projections
T3644 147-151 IN denotes into
T3645 152-155 DT denotes the
T3646 171-175 NN denotes cord
T3647 156-163 JJ denotes ventral
T3648 164-170 JJ denotes spinal
T3649 175-176 . denotes .
T3650 176-357 sentence denotes Er81, Pea3, and Erm constitute the Pea3 subfamily of ETS transcription factors, show a high degree of amino acid identity, and bind to very similar DNA target sequences [17,18,19].
T3651 177-181 NN denotes Er81
T3652 197-207 VBP denotes constitute
T3653 181-183 , denotes ,
T3654 183-187 NN denotes Pea3
T3655 187-189 , denotes ,
T3656 189-192 CC denotes and
T3657 193-196 NN denotes Erm
T3658 208-211 DT denotes the
T3659 217-226 NN denotes subfamily
T3660 212-216 NN denotes Pea3
T3661 227-229 IN denotes of
T3662 230-233 NN denotes ETS
T3663 248-255 NNS denotes factors
T3664 234-247 NN denotes transcription
T3665 255-257 , denotes ,
T3666 257-261 VBP denotes show
T3667 262-263 DT denotes a
T3668 269-275 NN denotes degree
T3669 264-268 JJ denotes high
T3670 276-278 IN denotes of
T3671 279-284 NN denotes amino
T3672 285-289 NN denotes acid
T3673 290-298 NN denotes identity
T3674 298-300 , denotes ,
T3675 300-303 CC denotes and
T3676 304-308 VBP denotes bind
T3677 309-311 IN denotes to
T3678 312-316 RB denotes very
T3679 317-324 JJ denotes similar
T3680 336-345 NNS denotes sequences
T3681 325-328 NN denotes DNA
T3682 329-335 NN denotes target
T3683 346-347 -LRB- denotes [
T3684 353-355 CD denotes 19
T3685 347-349 CD denotes 17
T3686 349-350 , denotes ,
T3687 350-352 CD denotes 18
T3688 352-353 , denotes ,
T3689 355-356 -RRB- denotes ]
T3690 356-357 . denotes .
T3691 357-631 sentence denotes Nevertheless, when introduced into the Er81 locus in analogy to a previously used targeting strategy (data not shown; [14]), neither Pea3 nor Erm could rescue Ia proprioceptive afferent projections to extensively invade the ventral horn of the spinal cord (data not shown).
T3692 358-370 RB denotes Nevertheless
T3693 510-516 VB denotes rescue
T3694 370-372 , denotes ,
T3695 372-376 WRB denotes when
T3696 377-387 VBN denotes introduced
T3697 388-392 IN denotes into
T3698 393-396 DT denotes the
T3699 402-407 NN denotes locus
T3700 397-401 NN denotes Er81
T3701 408-410 IN denotes in
T3702 411-418 NN denotes analogy
T3703 419-421 IN denotes to
T3704 422-423 DT denotes a
T3705 450-458 NN denotes strategy
T3706 424-434 RB denotes previously
T3707 435-439 VBN denotes used
T3708 440-449 NN denotes targeting
T3709 459-460 -LRB- denotes (
T3710 469-474 VBN denotes shown
T3711 460-464 NNS denotes data
T3712 465-468 RB denotes not
T3713 474-475 : denotes ;
T3714 476-477 -LRB- denotes [
T3715 477-479 CD denotes 14
T3716 479-480 -RRB- denotes ]
T3717 480-481 -RRB- denotes )
T3718 481-483 , denotes ,
T3719 483-490 CC denotes neither
T3720 491-495 NN denotes Pea3
T3721 496-499 CC denotes nor
T3722 500-503 NN denotes Erm
T3723 504-509 MD denotes could
T3724 517-519 NN denotes Ia
T3725 520-534 JJ denotes proprioceptive
T3726 544-555 NNS denotes projections
T3727 535-543 JJ denotes afferent
T3728 556-558 TO denotes to
T3729 571-577 VB denotes invade
T3730 559-570 RB denotes extensively
T3731 578-581 DT denotes the
T3732 590-594 NN denotes horn
T3733 582-589 JJ denotes ventral
T3734 595-597 IN denotes of
T3735 598-601 DT denotes the
T3736 609-613 NN denotes cord
T3737 602-608 JJ denotes spinal
T3738 614-615 -LRB- denotes (
T3739 624-629 VBN denotes shown
T3740 615-619 NNS denotes data
T3741 620-623 RB denotes not
T3742 629-630 -RRB- denotes )
T3743 630-631 . denotes .
T3744 631-875 sentence denotes These findings prompted us to analyze mice in which we integrated EWS-Pea3, a break-point fusion product between the amino-terminal domain of the Ewing sarcoma (EWS) gene and the Pea3 DNA binding domain [20,21], into the Er81 locus (Figure 1).
T3745 632-637 DT denotes These
T3746 638-646 NNS denotes findings
T3747 647-655 VBD denotes prompted
T3748 656-658 PRP denotes us
T3749 659-661 TO denotes to
T3750 662-669 VB denotes analyze
T3751 670-674 NNS denotes mice
T3752 675-677 IN denotes in
T3753 687-697 VBD denotes integrated
T3754 678-683 WDT denotes which
T3755 684-686 PRP denotes we
T3756 698-701 NN denotes EWS
T3757 702-706 NN denotes Pea3
T3758 701-702 HYPH denotes -
T3759 706-708 , denotes ,
T3760 708-709 DT denotes a
T3761 729-736 NN denotes product
T3762 710-715 NN denotes break
T3763 716-721 NN denotes point
T3764 715-716 HYPH denotes -
T3765 722-728 NN denotes fusion
T3766 737-744 IN denotes between
T3767 745-748 DT denotes the
T3768 764-770 NN denotes domain
T3769 749-754 NN denotes amino
T3770 755-763 JJ denotes terminal
T3771 754-755 HYPH denotes -
T3772 771-773 IN denotes of
T3773 774-777 DT denotes the
T3774 798-802 NN denotes gene
T3775 778-783 NN denotes Ewing
T3776 784-791 NN denotes sarcoma
T3777 792-793 -LRB- denotes (
T3778 793-796 NN denotes EWS
T3779 796-797 -RRB- denotes )
T3780 803-806 CC denotes and
T3781 807-810 DT denotes the
T3782 828-834 NN denotes domain
T3783 811-815 NN denotes Pea3
T3784 816-819 NN denotes DNA
T3785 820-827 VBG denotes binding
T3786 835-836 -LRB- denotes [
T3787 839-841 CD denotes 21
T3788 836-838 CD denotes 20
T3789 838-839 , denotes ,
T3790 841-842 -RRB- denotes ]
T3791 842-844 , denotes ,
T3792 844-848 IN denotes into
T3793 849-852 DT denotes the
T3794 858-863 NN denotes locus
T3795 853-857 NN denotes Er81
T3796 864-865 -LRB- denotes (
T3797 865-871 NN denotes Figure
T3798 872-873 CD denotes 1
T3799 873-874 -RRB- denotes )
T3800 874-875 . denotes .
T3801 875-1095 sentence denotes We found that in a luciferase-enzyme-based cell culture transfection assay, EWS-Pea3 showed stronger transactivation activity than Er81 or Pea3 (Figure 1J; data not shown), in agreement with previous studies [22,23,24].
T3802 876-878 PRP denotes We
T3803 879-884 VBD denotes found
T3804 885-889 IN denotes that
T3805 961-967 VBD denotes showed
T3806 890-892 IN denotes in
T3807 893-894 DT denotes a
T3808 945-950 NN denotes assay
T3809 895-905 NN denotes luciferase
T3810 906-912 NN denotes enzyme
T3811 905-906 HYPH denotes -
T3812 913-918 VBN denotes based
T3813 912-913 HYPH denotes -
T3814 919-923 NN denotes cell
T3815 924-931 NN denotes culture
T3816 932-944 NN denotes transfection
T3817 950-952 , denotes ,
T3818 952-955 NN denotes EWS
T3819 956-960 NN denotes Pea3
T3820 955-956 HYPH denotes -
T3821 968-976 JJR denotes stronger
T3822 993-1001 NN denotes activity
T3823 977-992 NN denotes transactivation
T3824 1002-1006 IN denotes than
T3825 1007-1011 NN denotes Er81
T3826 1012-1014 CC denotes or
T3827 1015-1019 NN denotes Pea3
T3828 1020-1021 -LRB- denotes (
T3829 1028-1030 NN denotes 1J
T3830 1021-1027 NN denotes Figure
T3831 1030-1031 : denotes ;
T3832 1032-1036 NNS denotes data
T3833 1041-1046 VBN denotes shown
T3834 1037-1040 RB denotes not
T3835 1046-1047 -RRB- denotes )
T3836 1047-1049 , denotes ,
T3837 1049-1051 IN denotes in
T3838 1052-1061 NN denotes agreement
T3839 1062-1066 IN denotes with
T3840 1067-1075 JJ denotes previous
T3841 1076-1083 NNS denotes studies
T3842 1084-1085 -LRB- denotes [
T3843 1091-1093 CD denotes 24
T3844 1085-1087 CD denotes 22
T3845 1087-1088 , denotes ,
T3846 1088-1090 CD denotes 23
T3847 1090-1091 , denotes ,
T3848 1093-1094 -RRB- denotes ]
T3849 1094-1095 . denotes .
T3850 1095-1265 sentence denotes Moreover, transactivation by EWS-Pea3 was abolished by mutation of ETS-binding sites in the reporter plasmid, demonstrating ETS-binding-site dependence (data not shown).
T3851 1096-1104 RB denotes Moreover
T3852 1138-1147 VBN denotes abolished
T3853 1104-1106 , denotes ,
T3854 1106-1121 NN denotes transactivation
T3855 1122-1124 IN denotes by
T3856 1125-1128 NN denotes EWS
T3857 1129-1133 NN denotes Pea3
T3858 1128-1129 HYPH denotes -
T3859 1134-1137 VBD denotes was
T3860 1148-1150 IN denotes by
T3861 1151-1159 NN denotes mutation
T3862 1160-1162 IN denotes of
T3863 1163-1166 NN denotes ETS
T3864 1167-1174 VBG denotes binding
T3865 1166-1167 HYPH denotes -
T3866 1175-1180 NNS denotes sites
T3867 1181-1183 IN denotes in
T3868 1184-1187 DT denotes the
T3869 1197-1204 NN denotes plasmid
T3870 1188-1196 NN denotes reporter
T3871 1204-1206 , denotes ,
T3872 1206-1219 VBG denotes demonstrating
T3873 1220-1223 NN denotes ETS
T3874 1224-1231 VBG denotes binding
T3875 1223-1224 HYPH denotes -
T3876 1232-1236 NN denotes site
T3877 1231-1232 HYPH denotes -
T3878 1237-1247 NN denotes dependence
T3879 1248-1249 -LRB- denotes (
T3880 1258-1263 VBN denotes shown
T3881 1249-1253 NNS denotes data
T3882 1254-1257 RB denotes not
T3883 1263-1264 -RRB- denotes )
T3884 1264-1265 . denotes .
R1010 T3622 T3623 nsubj We,defined
R1011 T3624 T3623 advmod first,defined
R1012 T3625 T3626 det an,regulator
R1013 T3626 T3623 dobj regulator,defined
R1014 T3627 T3626 compound ETS,regulator
R1015 T3628 T3626 compound transcription,regulator
R1016 T3629 T3630 dep that,is
R1017 T3630 T3626 relcl is,regulator
R1018 T3631 T3630 acomp able,is
R1019 T3632 T3633 aux to,replace
R1020 T3633 T3631 xcomp replace,able
R1021 T3634 T3635 det the,function
R1022 T3635 T3633 dobj function,replace
R1023 T3636 T3635 prep of,function
R1024 T3637 T3636 pobj Er81,of
R1025 T3638 T3635 prep within,function
R1026 T3639 T3640 amod proprioceptive,afferents
R1027 T3640 T3638 pobj afferents,within
R1028 T3641 T3642 aux to,direct
R1029 T3642 T3633 advcl direct,replace
R1030 T3643 T3642 dobj projections,direct
R1031 T3644 T3642 prep into,direct
R1032 T3645 T3646 det the,cord
R1033 T3646 T3644 pobj cord,into
R1034 T3647 T3646 amod ventral,cord
R1035 T3648 T3646 amod spinal,cord
R1036 T3649 T3623 punct .,defined
R1037 T3651 T3652 nsubj Er81,constitute
R1038 T3653 T3651 punct ", ",Er81
R1039 T3654 T3651 conj Pea3,Er81
R1040 T3655 T3654 punct ", ",Pea3
R1041 T3656 T3654 cc and,Pea3
R1042 T3657 T3654 conj Erm,Pea3
R1043 T3658 T3659 det the,subfamily
R1044 T3659 T3652 dobj subfamily,constitute
R1045 T3660 T3659 compound Pea3,subfamily
R1046 T3661 T3659 prep of,subfamily
R1047 T3662 T3663 compound ETS,factors
R1048 T3663 T3661 pobj factors,of
R1049 T3664 T3663 compound transcription,factors
R1050 T3665 T3652 punct ", ",constitute
R1051 T3666 T3652 conj show,constitute
R1052 T3667 T3668 det a,degree
R1053 T3668 T3666 dobj degree,show
R1054 T3669 T3668 amod high,degree
R1055 T3670 T3668 prep of,degree
R1056 T3671 T3672 compound amino,acid
R1057 T3672 T3673 compound acid,identity
R1058 T3673 T3670 pobj identity,of
R1059 T3674 T3666 punct ", ",show
R1060 T3675 T3666 cc and,show
R1061 T3676 T3666 conj bind,show
R1062 T3677 T3676 prep to,bind
R1063 T3678 T3679 advmod very,similar
R1064 T3679 T3680 amod similar,sequences
R1065 T3680 T3677 pobj sequences,to
R1066 T3681 T3680 compound DNA,sequences
R1067 T3682 T3680 compound target,sequences
R1068 T3683 T3684 punct [,19
R1069 T3684 T3676 parataxis 19,bind
R1070 T3685 T3684 nummod 17,19
R1071 T3686 T3684 punct ",",19
R1072 T3687 T3684 nummod 18,19
R1073 T3688 T3684 punct ",",19
R1074 T3689 T3684 punct ],19
R1075 T3690 T3652 punct .,constitute
R1076 T3692 T3693 advmod Nevertheless,rescue
R1077 T3694 T3693 punct ", ",rescue
R1078 T3695 T3696 advmod when,introduced
R1079 T3696 T3693 advcl introduced,rescue
R1080 T3697 T3696 prep into,introduced
R1081 T3698 T3699 det the,locus
R1082 T3699 T3697 pobj locus,into
R1083 T3700 T3699 compound Er81,locus
R1084 T3701 T3696 prep in,introduced
R1085 T3702 T3701 pobj analogy,in
R1086 T3703 T3702 prep to,analogy
R1087 T3704 T3705 det a,strategy
R1088 T3705 T3703 pobj strategy,to
R1089 T3706 T3707 advmod previously,used
R1090 T3707 T3705 amod used,strategy
R1091 T3708 T3705 compound targeting,strategy
R1092 T3709 T3710 punct (,shown
R1093 T3710 T3696 parataxis shown,introduced
R1094 T3711 T3710 nsubj data,shown
R1095 T3712 T3710 neg not,shown
R1096 T3713 T3710 punct ;,shown
R1097 T3714 T3715 punct [,14
R1098 T3715 T3710 parataxis 14,shown
R1099 T3716 T3715 punct ],14
R1100 T3717 T3710 punct ),shown
R1101 T3718 T3693 punct ", ",rescue
R1102 T3719 T3720 preconj neither,Pea3
R1103 T3720 T3693 nsubj Pea3,rescue
R1104 T3721 T3720 cc nor,Pea3
R1105 T3722 T3720 conj Erm,Pea3
R1106 T3723 T3693 aux could,rescue
R1107 T3724 T3725 npadvmod Ia,proprioceptive
R1108 T3725 T3726 amod proprioceptive,projections
R1109 T3726 T3693 dobj projections,rescue
R1110 T3727 T3726 amod afferent,projections
R1111 T3728 T3729 aux to,invade
R1112 T3729 T3693 advcl invade,rescue
R1113 T3730 T3729 advmod extensively,invade
R1114 T3731 T3732 det the,horn
R1115 T3732 T3729 dobj horn,invade
R1116 T3733 T3732 amod ventral,horn
R1117 T3734 T3732 prep of,horn
R1118 T3735 T3736 det the,cord
R1119 T3736 T3734 pobj cord,of
R1120 T3737 T3736 amod spinal,cord
R1121 T3738 T3739 punct (,shown
R1122 T3739 T3729 parataxis shown,invade
R1123 T3740 T3739 nsubj data,shown
R1124 T3741 T3739 neg not,shown
R1125 T3742 T3739 punct ),shown
R1126 T3743 T3693 punct .,rescue
R1127 T3745 T3746 det These,findings
R1128 T3746 T3747 nsubj findings,prompted
R1129 T3748 T3747 dobj us,prompted
R1130 T3749 T3750 aux to,analyze
R1131 T3750 T3747 xcomp analyze,prompted
R1132 T3751 T3750 dobj mice,analyze
R1133 T3752 T3753 prep in,integrated
R1134 T3753 T3751 relcl integrated,mice
R1135 T3754 T3752 pobj which,in
R1136 T3755 T3753 nsubj we,integrated
R1137 T3756 T3757 compound EWS,Pea3
R1138 T3757 T3753 dobj Pea3,integrated
R1139 T3758 T3757 punct -,Pea3
R1140 T3759 T3757 punct ", ",Pea3
R1141 T3760 T3761 det a,product
R1142 T3761 T3757 appos product,Pea3
R1143 T3762 T3763 compound break,point
R1144 T3763 T3761 compound point,product
R1145 T3764 T3763 punct -,point
R1146 T3765 T3761 compound fusion,product
R1147 T3766 T3761 prep between,product
R1148 T3767 T3768 det the,domain
R1149 T3768 T3766 pobj domain,between
R1150 T3769 T3770 npadvmod amino,terminal
R1151 T3770 T3768 amod terminal,domain
R1152 T3771 T3770 punct -,terminal
R1153 T3772 T3768 prep of,domain
R1154 T3773 T3774 det the,gene
R1155 T3774 T3772 pobj gene,of
R1156 T3775 T3776 nmod Ewing,sarcoma
R1157 T3776 T3774 nmod sarcoma,gene
R1158 T3777 T3776 punct (,sarcoma
R1159 T3778 T3776 appos EWS,sarcoma
R1160 T3779 T3774 punct ),gene
R1161 T3780 T3768 cc and,domain
R1162 T3781 T3782 det the,domain
R1163 T3782 T3768 conj domain,domain
R1164 T3783 T3784 compound Pea3,DNA
R1165 T3784 T3785 npadvmod DNA,binding
R1166 T3785 T3782 amod binding,domain
R1167 T3786 T3787 punct [,21
R1168 T3787 T3782 parataxis 21,domain
R1169 T3788 T3787 nummod 20,21
R1170 T3789 T3787 punct ",",21
R1171 T3790 T3787 punct ],21
R1172 T3791 T3753 punct ", ",integrated
R1173 T3792 T3753 prep into,integrated
R1174 T3793 T3794 det the,locus
R1175 T3794 T3792 pobj locus,into
R1176 T3795 T3794 compound Er81,locus
R1177 T3796 T3797 punct (,Figure
R1178 T3797 T3753 parataxis Figure,integrated
R1179 T3798 T3797 nummod 1,Figure
R1180 T3799 T3797 punct ),Figure
R1181 T3800 T3747 punct .,prompted
R1182 T3802 T3803 nsubj We,found
R1183 T3804 T3805 mark that,showed
R1184 T3805 T3803 ccomp showed,found
R1185 T3806 T3805 prep in,showed
R1186 T3807 T3808 det a,assay
R1187 T3808 T3806 pobj assay,in
R1188 T3809 T3810 compound luciferase,enzyme
R1189 T3810 T3812 npadvmod enzyme,based
R1190 T3811 T3810 punct -,enzyme
R1191 T3812 T3808 amod based,assay
R1192 T3813 T3812 punct -,based
R1193 T3814 T3815 compound cell,culture
R1194 T3815 T3808 compound culture,assay
R1195 T3816 T3808 compound transfection,assay
R1196 T3817 T3805 punct ", ",showed
R1197 T3818 T3819 compound EWS,Pea3
R1198 T3819 T3805 nsubj Pea3,showed
R1199 T3820 T3819 punct -,Pea3
R1200 T3821 T3822 amod stronger,activity
R1201 T3822 T3805 dobj activity,showed
R1202 T3823 T3822 compound transactivation,activity
R1203 T3824 T3822 prep than,activity
R1204 T3825 T3824 pobj Er81,than
R1205 T3826 T3825 cc or,Er81
R1206 T3827 T3825 conj Pea3,Er81
R1207 T3828 T3829 punct (,1J
R1208 T3829 T3822 parataxis 1J,activity
R1209 T3830 T3829 compound Figure,1J
R1210 T3831 T3829 punct ;,1J
R1211 T3832 T3833 nsubj data,shown
R1212 T3833 T3829 ccomp shown,1J
R1213 T3834 T3833 neg not,shown
R1214 T3835 T3829 punct ),1J
R1215 T3836 T3805 punct ", ",showed
R1216 T3837 T3805 prep in,showed
R1217 T3838 T3837 pobj agreement,in
R1218 T3839 T3838 prep with,agreement
R1219 T3840 T3841 amod previous,studies
R1220 T3841 T3839 pobj studies,with
R1221 T3842 T3843 punct [,24
R1222 T3843 T3841 parataxis 24,studies
R1223 T3844 T3843 nummod 22,24
R1224 T3845 T3843 punct ",",24
R1225 T3846 T3843 nummod 23,24
R1226 T3847 T3843 punct ",",24
R1227 T3848 T3843 punct ],24
R1228 T3849 T3803 punct .,found
R1229 T3851 T3852 advmod Moreover,abolished
R1230 T3853 T3852 punct ", ",abolished
R1231 T3854 T3852 nsubjpass transactivation,abolished
R1232 T3855 T3854 prep by,transactivation
R1233 T3856 T3857 compound EWS,Pea3
R1234 T3857 T3855 pobj Pea3,by
R1235 T3858 T3857 punct -,Pea3
R1236 T3859 T3852 auxpass was,abolished
R1237 T3860 T3852 agent by,abolished
R1238 T3861 T3860 pobj mutation,by
R1239 T3862 T3861 prep of,mutation
R1240 T3863 T3864 npadvmod ETS,binding
R1241 T3864 T3866 amod binding,sites
R1242 T3865 T3864 punct -,binding
R1243 T3866 T3862 pobj sites,of
R1244 T3867 T3861 prep in,mutation
R1245 T3868 T3869 det the,plasmid
R1246 T3869 T3867 pobj plasmid,in
R1247 T3870 T3869 compound reporter,plasmid
R1248 T3871 T3852 punct ", ",abolished
R1249 T3872 T3852 advcl demonstrating,abolished
R1250 T3873 T3874 npadvmod ETS,binding
R1251 T3874 T3876 amod binding,site
R1252 T3875 T3874 punct -,binding
R1253 T3876 T3878 compound site,dependence
R1254 T3877 T3876 punct -,site
R1255 T3878 T3872 dobj dependence,demonstrating
R1256 T3879 T3880 punct (,shown
R1257 T3880 T3872 parataxis shown,demonstrating
R1258 T3881 T3880 nsubj data,shown
R1259 T3882 T3880 neg not,shown
R1260 T3883 T3880 punct ),shown
R1261 T3884 T3852 punct .,abolished

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3395 24-37 GO_EXT:transcription denotes transcription
T3396 38-47 GO_EXT:regulator denotes regulator
T3397 88-92 PR_EXT:000007223 denotes Er81
T3398 100-114 GO:0019230 denotes proprioceptive
T3399 135-146 GO:0042995 denotes projections
T3400 156-175 UBERON:0002257 denotes ventral spinal cord
T3401 177-181 PR_EXT:000007223 denotes Er81
T3402 183-187 PR_EXT:000007227 denotes Pea3
T3403 193-196 PR_EXT:000007228 denotes Erm
T3404 212-216 PR_EXT:000007227 denotes Pea3
T3405 234-247 GO_EXT:transcription denotes transcription
T3406 234-255 GO_EXT:transcription_factor denotes transcription factors
T3407 279-289 CHEBI_SO_EXT:amino_acid denotes amino acid
T3408 304-308 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T3409 325-328 CHEBI_SO_EXT:DNA denotes DNA
T3410 336-345 SO_EXT:biological_sequence denotes sequences
T3411 397-401 PR_EXT:000007223 denotes Er81
T3412 491-495 PR_EXT:000007227 denotes Pea3
T3413 500-503 PR_EXT:000007228 denotes Erm
T3414 510-516 SO_EXT:sequence_rescue_process denotes rescue
T3415 520-534 GO:0019230 denotes proprioceptive
T3416 544-555 GO:0042995 denotes projections
T3417 582-597 _FRAGMENT denotes ventral horn of
T3418 602-613 UBERON:0002257 denotes spinal cord
T3419 670-674 NCBITaxon:10088 denotes mice
T3420 698-701 PR_EXT:000007243 denotes EWS
T3421 702-706 PR_EXT:000007227 denotes Pea3
T3422 710-721 SO_EXT:0001021 denotes break-point
T3423 722-728 SO_EXT:sequence_fusion_entity_or_process denotes fusion
T3424 749-763 CHEBI_SO_EXT:N_terminus_or_N_terminal_region denotes amino-terminal
T3425 764-770 SO_EXT:0000417 denotes domain
T3426 778-791 PR_EXT:000007243 denotes Ewing sarcoma
T3427 793-796 PR_EXT:000007243 denotes EWS
T3428 798-802 SO_EXT:0000704 denotes gene
T3429 811-815 PR_EXT:000007227 denotes Pea3
T3430 816-819 CHEBI_SO_EXT:DNA denotes DNA
T3431 820-827 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3432 828-834 SO_EXT:0000417 denotes domain
T3433 853-857 PR_EXT:000007223 denotes Er81
T3434 895-905 GO_EXT:0045289 denotes luciferase
T3435 906-912 CHEBI_GO_SO_EXT:enzyme denotes enzyme
T3436 919-923 CL_GO_EXT:cell denotes cell
T3437 932-944 GO:0009294 denotes transfection
T3438 952-955 PR_EXT:000007243 denotes EWS
T3439 956-960 PR_EXT:000007227 denotes Pea3
T3440 1007-1011 PR_EXT:000007223 denotes Er81
T3441 1015-1019 PR_EXT:000007227 denotes Pea3
T3442 1125-1128 PR_EXT:000007243 denotes EWS
T3443 1129-1133 PR_EXT:000007227 denotes Pea3
T3444 1151-1159 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T3445 1167-1174 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3446 1167-1180 SO_EXT:0000409 denotes binding sites
T3447 1197-1204 SO_EXT:0000155 denotes plasmid
T3448 1224-1231 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T3449 1224-1236 SO_EXT:0000409 denotes binding-site
R997 T3418 T3417 _lexicallyChainedTo spinal cord,ventral horn of

2_test

Id Subject Object Predicate Lexical cue
15836427-9259977-84719619 347-349 9259977 denotes 17
15836427-9734357-84719620 350-352 9734357 denotes 18
15836427-11096072-84719621 353-355 11096072 denotes 19
15836427-10850491-84719622 477-479 10850491 denotes 14
15836427-8605035-84719623 836-838 8605035 denotes 20
15836427-11607824-84719624 839-841 11607824 denotes 21
15836427-8246959-84719625 1085-1087 8246959 denotes 22
15836427-7503813-84719626 1088-1090 7503813 denotes 23
15836427-10623711-84719627 1091-1093 10623711 denotes 24
T23891 347-349 9259977 denotes 17
T38448 350-352 9734357 denotes 18
T25362 353-355 11096072 denotes 19
T88334 477-479 10850491 denotes 14
T1568 836-838 8605035 denotes 20
T23957 839-841 11607824 denotes 21
T9762 1085-1087 8246959 denotes 22
T92554 1088-1090 7503813 denotes 23
T11355 1091-1093 10623711 denotes 24

biosemtest

Id Subject Object Predicate Lexical cue
T3023 128-134 UMLS/C0439851 denotes direct
T2715 304-308 UMLS/C2349209 denotes bind
T2719 304-308 UMLS/C1145667 denotes bind
T2722 1076-1083 UMLS/C0947630 denotes studies
T2723 729-736 UMLS/C1514468 denotes product
T2726 913-918 UMLS/C1880279 denotes based
T2727 582-613 UMLS/C0228569 denotes ventral horn of the spinal cord
T2729 582-613 UMLS/C0228590 denotes ventral horn of the spinal cord
T2731 61-63 UMLS/C0319022 denotes to
T2732 125-127 UMLS/C0319022 denotes to
T2733 309-311 UMLS/C0319022 denotes to
T2734 419-421 UMLS/C0319022 denotes to
T2735 556-558 UMLS/C0319022 denotes to
T2736 659-661 UMLS/C0319022 denotes to
T2756 1076-1083 UMLS/C1880229 denotes studies
T2759 279-289 UMLS/C0002520 denotes amino acid
T2765 945-950 UMLS/C0243073 denotes assay
T2771 1237-1247 UMLS/C0011546 denotes dependence
T2788 913-918 UMLS/C0178499 denotes based
T2789 336-345 UMLS/C1547787 denotes sequences
T2790 264-268 UMLS/C1561958 denotes high
T2792 264-268 UMLS/C1561957 denotes high
T2801 647-655 UMLS/C1602245 denotes prompted
T2813 1076-1083 UMLS/C0008976 denotes studies
T2814 1076-1083 UMLS/C0008972 denotes studies
T2815 56-60 UMLS/C0085732 denotes able
T2821 377-387 UMLS/C1292748 denotes introduced
T2823 945-950 UMLS/C1510438 denotes assay
T2833 1167-1180 UMLS/C0682969 denotes binding sites
T2834 269-275 UMLS/C0441889 denotes degree
T2839 764-770 UMLS/C1880389 denotes domain
T2841 764-770 UMLS/C1514562 denotes domain
T2844 968-976 UMLS/C0442821 denotes stronger
T2851 1076-1083 UMLS/C0557651 denotes studies
T2854 517-519 UMLS/C0444974 denotes Ia
T2859 336-345 UMLS/C1519249 denotes sequences
T2861 336-345 UMLS/C0004793 denotes sequences
T2862 1197-1204 UMLS/C0032136 denotes plasmid
T2864 164-175 UMLS/C0037925 denotes spinal cord
T2867 164-175 UMLS/C0037928 denotes spinal cord
T2872 993-1001 UMLS/C0441655 denotes activity
T2873 325-328 UMLS/C1325786 denotes DNA
T2874 816-834 UMLS/C1511662 denotes DNA binding domain
T2875 722-728 UMLS/C0332466 denotes fusion
T2876 269-275 UMLS/C0449286 denotes degree
T2877 304-308 UMLS/C1689898 denotes bind
T2880 264-268 UMLS/C1522410 denotes high
T2881 1188-1196 UMLS/C1522485 denotes reporter
T2885 913-918 UMLS/C1549548 denotes based
T2890 913-918 UMLS/C1626935 denotes based
T2891 3-8 UMLS/C0205435 denotes first
T2893 217-226 UMLS/C1711207 denotes subfamily
T2895 504-509 UMLS/C0006823 denotes could
T2899 64-71 UMLS/C1554078 denotes replace
T2901 913-918 UMLS/C1550601 denotes based
T2905 460-464 UMLS/C1511726 denotes data
T2906 615-619 UMLS/C1511726 denotes data
T2907 1032-1036 UMLS/C1511726 denotes data
T2908 1249-1253 UMLS/C1511726 denotes data
T2913 336-345 UMLS/C1553778 denotes sequences
T2917 1076-1083 UMLS/C1705923 denotes studies
T2920 913-918 UMLS/C1705938 denotes based
T2924 662-669 UMLS/C0936012 denotes analyze
T2933 1188-1196 UMLS/C1705915 denotes reporter
T2934 264-268 UMLS/C0205250 denotes high
T2941 329-335 UMLS/C0599894 denotes target
T2942 440-449 UMLS/C0599894 denotes targeting
T2945 9-16 UMLS/C1704788 denotes defined
T2947 465-468 UMLS/C1518422 denotes not
T2948 620-623 UMLS/C1518422 denotes not
T2949 1037-1040 UMLS/C1518422 denotes not
T2950 1254-1257 UMLS/C1518422 denotes not
T2955 269-275 UMLS/C2348088 denotes degree
T2962 264-268 UMLS/C1299351 denotes high
T2969 38-47 UMLS/C1704735 denotes regulator
T2970 38-47 UMLS/C1704734 denotes regulator
T2974 1067-1075 UMLS/C1552607 denotes previous
T2976 115-124 UMLS/C0205115 denotes afferents
T2977 535-543 UMLS/C0205115 denotes afferent
T2992 317-324 UMLS/C2348205 denotes similar
T2995 336-345 UMLS/C1561491 denotes sequences
T2998 977-992 UMLS/C0040624 denotes transactivation
T2999 1106-1121 UMLS/C0040624 denotes transactivation
T3001 1188-1196 UMLS/C1709908 denotes reporter
T3007 20-23 UMLS/C0812380 denotes ETS
T3008 230-233 UMLS/C0812380 denotes ETS
T3009 1163-1166 UMLS/C0812380 denotes ETS
T3014 336-345 UMLS/C0162326 denotes sequences
T3017 793-796 UMLS/C1704722 denotes EWS
T3018 269-275 UMLS/C1561545 denotes degree
T3020 722-728 UMLS/C1293131 denotes fusion
T3021 128-134 UMLS/C1947931 denotes direct
T3029 304-308 UMLS/C1167622 denotes bind
T3030 1067-1075 UMLS/C0205156 denotes previous
T3032 1237-1247 UMLS/C0439857 denotes dependence
T3038 234-255 UMLS/C0040648 denotes transcription factors
T3042 24-37 UMLS/C0040649 denotes transcription
T3045 517-519 UMLS/C1947960 denotes Ia
T3049 128-134 UMLS/C1552596 denotes direct
T3051 402-407 UMLS/C1708726 denotes locus
T3052 858-863 UMLS/C1708726 denotes locus
T3055 932-944 UMLS/C0040669 denotes transfection
T3057 993-1001 UMLS/C1561536 denotes activity
T3060 56-60 UMLS/C1299581 denotes able
T3063 64-71 UMLS/C1550539 denotes replace
T3064 1076-1083 UMLS/C2349977 denotes studies
T3069 1076-1083 UMLS/C2603343 denotes studies
T3071 20-23 UMLS/C1705691 denotes ETS
T3072 230-233 UMLS/C1705691 denotes ETS
T3073 1163-1166 UMLS/C1705691 denotes ETS
T3077 135-146 UMLS/C0348018 denotes projections
T3078 544-555 UMLS/C0348018 denotes projections
T3085 135-146 UMLS/C0033363 denotes projections
T3086 544-555 UMLS/C0033363 denotes projections
T3090 913-918 UMLS/C1704464 denotes based
T3096 1151-1159 UMLS/C0026882 denotes mutation
T3098 64-71 UMLS/C0559956 denotes replace
T3100 638-646 UMLS/C2607943 denotes findings
T3104 135-146 UMLS/C0016538 denotes projections
T3105 544-555 UMLS/C0016538 denotes projections
T3109 571-577 UMLS/C1517574 denotes invade
T3110 778-791 UMLS/C0553580 denotes Ewing sarcoma
T3111 729-736 UMLS/C1550506 denotes product
T3112 269-275 UMLS/C0542560 denotes degree
T3114 336-345 UMLS/C1610719 denotes sequences
T3122 450-458 UMLS/C0679199 denotes strategy
T3123 793-796 UMLS/C0808901 denotes EWS
T3124 164-175 UMLS/C1278836 denotes spinal cord
T3129 764-770 UMLS/C1883221 denotes domain
T3130 411-418 UMLS/C0679213 denotes analogy
T3133 156-163 UMLS/C1704448 denotes ventral
T3139 76-84 UMLS/C1705273 denotes function
T3141 729-736 UMLS/C1704444 denotes product
T3146 764-770 UMLS/C1883204 denotes domain
T3148 1151-1159 UMLS/C1705285 denotes mutation
T3156 290-298 UMLS/C2003939 denotes identity
T3164 64-71 UMLS/C1553396 denotes replace
T3166 290-298 UMLS/C0424215 denotes identity
T3168 76-84 UMLS/C0542341 denotes function
T3172 504-509 UMLS/C0344312 denotes could
T3174 3-8 UMLS/C1279901 denotes first
T3175 879-884 UMLS/C0037088 denotes found
T3179 993-1001 UMLS/C0439167 denotes activity
T3184 945-950 UMLS/C0005507 denotes assay
T3187 1167-1180 UMLS/C0005456 denotes binding sites
T3188 1188-1196 UMLS/C0335038 denotes reporter
T3190 1052-1061 UMLS/C0680240 denotes agreement
T3191 329-335 UMLS/C1521840 denotes target
T3192 440-449 UMLS/C1521840 denotes targeting
T3193 879-884 UMLS/C0243095 denotes found
T3197 304-308 UMLS/C0243122 denotes bind
T3204 325-328 UMLS/C0012854 denotes DNA
T3211 656-658 UMLS/C0439224 denotes us
T3213 656-658 UMLS/C2348614 denotes us
T3215 20-23 UMLS/C0813971 denotes ETS
T3216 230-233 UMLS/C0813971 denotes ETS
T3217 1163-1166 UMLS/C0813971 denotes ETS
T3220 919-931 UMLS/C0007585 denotes cell culture

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3231 88-92 PR:000007223 denotes Er81
T3232 100-114 GO:0019230 denotes proprioceptive
T3233 135-146 GO:0042995 denotes projections
T3234 156-175 UBERON:0002257 denotes ventral spinal cord
T3235 177-181 PR:000007223 denotes Er81
T3236 183-187 PR:000007227 denotes Pea3
T3237 193-196 PR:000007228 denotes Erm
T3238 212-216 PR:000007227 denotes Pea3
T3239 397-401 PR:000007223 denotes Er81
T3240 491-495 PR:000007227 denotes Pea3
T3241 500-503 PR:000007228 denotes Erm
T3242 520-534 GO:0019230 denotes proprioceptive
T3243 544-555 GO:0042995 denotes projections
T3244 582-597 _FRAGMENT denotes ventral horn of
T3245 602-613 UBERON:0002257 denotes spinal cord
T3246 670-674 NCBITaxon:10088 denotes mice
T3247 698-701 PR:000007243 denotes EWS
T3248 702-706 PR:000007227 denotes Pea3
T3249 710-721 SO:0001021 denotes break-point
T3250 764-770 SO:0000417 denotes domain
T3251 778-791 PR:000007243 denotes Ewing sarcoma
T3252 793-796 PR:000007243 denotes EWS
T3253 798-802 SO:0000704 denotes gene
T3254 811-815 PR:000007227 denotes Pea3
T3255 828-834 SO:0000417 denotes domain
T3256 853-857 PR:000007223 denotes Er81
T3257 932-944 GO:0009294 denotes transfection
T3258 952-955 PR:000007243 denotes EWS
T3259 956-960 PR:000007227 denotes Pea3
T3260 1007-1011 PR:000007223 denotes Er81
T3261 1015-1019 PR:000007227 denotes Pea3
T3262 1125-1128 PR:000007243 denotes EWS
T3263 1129-1133 PR:000007227 denotes Pea3
T3264 1167-1180 SO:0000409 denotes binding sites
T3265 1197-1204 SO:0000155 denotes plasmid
T3266 1224-1236 SO:0000409 denotes binding-site
R995 T3245 T3244 _lexicallyChainedTo spinal cord,ventral horn of