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PMC:1084331 / 41510-42708 JSONTXT

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Id Subject Object Predicate Lexical cue
T13099 0-15 JJ denotes Transcriptional
T13100 16-31 NN denotes transactivation
T13101 32-38 NNS denotes assays
T13102 38-235 sentence denotes The following plasmids were used for transcriptional transactivation assays: pRc/RSV (Invitrogen, Carlsbad, California, United States), pRc/RSV-Er81, pRc/RSV-EWS-Pea3, pTP-5xETS, and pTP-5xETSmut.
T13103 39-42 DT denotes The
T13104 53-61 NNS denotes plasmids
T13105 43-52 VBG denotes following
T13106 67-71 VBN denotes used
T13107 62-66 VBD denotes were
T13108 72-75 IN denotes for
T13109 76-91 JJ denotes transcriptional
T13110 108-114 NNS denotes assays
T13111 92-107 NN denotes transactivation
T13112 114-116 : denotes :
T13113 116-119 NN denotes pRc
T13114 120-123 NN denotes RSV
T13115 119-120 HYPH denotes /
T13116 124-125 -LRB- denotes (
T13117 125-135 NNP denotes Invitrogen
T13118 135-137 , denotes ,
T13119 137-145 NNP denotes Carlsbad
T13120 145-147 , denotes ,
T13121 147-157 NNP denotes California
T13122 157-159 , denotes ,
T13123 159-165 NNP denotes United
T13124 166-172 NNP denotes States
T13125 172-173 -RRB- denotes )
T13126 173-175 , denotes ,
T13127 175-178 NN denotes pRc
T13128 179-182 NN denotes RSV
T13129 178-179 HYPH denotes /
T13130 183-187 NN denotes Er81
T13131 182-183 HYPH denotes -
T13132 187-189 , denotes ,
T13133 189-192 NN denotes pRc
T13134 193-196 NN denotes RSV
T13135 192-193 HYPH denotes /
T13136 201-205 NN denotes Pea3
T13137 196-197 HYPH denotes -
T13138 197-200 NN denotes EWS
T13139 200-201 HYPH denotes -
T13140 205-207 , denotes ,
T13141 207-210 NN denotes pTP
T13142 211-216 NN denotes 5xETS
T13143 210-211 HYPH denotes -
T13144 216-218 , denotes ,
T13145 218-221 CC denotes and
T13146 222-225 NN denotes pTP
T13147 226-234 NN denotes 5xETSmut
T13148 225-226 HYPH denotes -
T13149 234-235 . denotes .
T13150 235-370 sentence denotes pRc/RSV-Er81 and pRc/RSV-EWS-Pea3 were obtained by insertion of the cDNAs for Er81 or EWS-Pea3 (gift from J. A. Hassell) into pRc/RSV.
T13151 236-239 NN denotes pRc
T13152 240-243 NN denotes RSV
T13153 239-240 HYPH denotes /
T13154 244-248 NN denotes Er81
T13155 243-244 HYPH denotes -
T13156 275-283 VBN denotes obtained
T13157 249-252 CC denotes and
T13158 253-256 NN denotes pRc
T13159 257-260 NN denotes RSV
T13160 256-257 HYPH denotes /
T13161 265-269 NN denotes Pea3
T13162 260-261 HYPH denotes -
T13163 261-264 NN denotes EWS
T13164 264-265 HYPH denotes -
T13165 270-274 VBD denotes were
T13166 284-286 IN denotes by
T13167 287-296 NN denotes insertion
T13168 297-299 IN denotes of
T13169 300-303 DT denotes the
T13170 304-309 NNS denotes cDNAs
T13171 310-313 IN denotes for
T13172 314-318 NN denotes Er81
T13173 319-321 CC denotes or
T13174 322-325 NN denotes EWS
T13175 326-330 NN denotes Pea3
T13176 325-326 HYPH denotes -
T13177 331-332 -LRB- denotes (
T13178 332-336 NN denotes gift
T13179 337-341 IN denotes from
T13180 342-344 NNP denotes J.
T13181 348-355 NNP denotes Hassell
T13182 345-347 NNP denotes A.
T13183 355-356 -RRB- denotes )
T13184 357-361 IN denotes into
T13185 362-365 NN denotes pRc
T13186 366-369 NN denotes RSV
T13187 365-366 HYPH denotes /
T13188 369-370 . denotes .
T13189 370-545 sentence denotes pTP-5xETS was constructed by inserting a cassette of five repetitive copies of high-affinity Pea3 binding sites (5′- GCCGGAAGC-3′) [18,19] into a modified version of pTK-Luc.
T13190 371-374 NN denotes pTP
T13191 375-380 NN denotes 5xETS
T13192 374-375 HYPH denotes -
T13193 385-396 VBN denotes constructed
T13194 381-384 VBD denotes was
T13195 397-399 IN denotes by
T13196 400-409 VBG denotes inserting
T13197 410-411 DT denotes a
T13198 412-420 NN denotes cassette
T13199 421-423 IN denotes of
T13200 424-428 CD denotes five
T13201 440-446 NNS denotes copies
T13202 429-439 JJ denotes repetitive
T13203 447-449 IN denotes of
T13204 450-454 JJ denotes high
T13205 455-463 NN denotes affinity
T13206 454-455 HYPH denotes -
T13207 477-482 NNS denotes sites
T13208 464-468 NN denotes Pea3
T13209 469-476 NN denotes binding
T13210 483-484 -LRB- denotes (
T13211 498-499 CD denotes 3
T13212 484-485 CD denotes 5
T13213 485-486 SYM denotes ′
T13214 486-487 HYPH denotes -
T13215 488-497 NN denotes GCCGGAAGC
T13216 497-498 HYPH denotes -
T13217 499-500 SYM denotes ′
T13218 500-501 -RRB- denotes )
T13219 502-503 -LRB- denotes [
T13220 506-508 CD denotes 19
T13221 503-505 CD denotes 18
T13222 505-506 , denotes ,
T13223 508-509 -RRB- denotes ]
T13224 510-514 IN denotes into
T13225 515-516 DT denotes a
T13226 526-533 NN denotes version
T13227 517-525 VBN denotes modified
T13228 534-536 IN denotes of
T13229 537-540 NN denotes pTK
T13230 541-544 NN denotes Luc
T13231 540-541 HYPH denotes -
T13232 544-545 . denotes .
T13233 545-662 sentence denotes pTP-5xETSmut was generated as pTP-5xETS but using a mutated complement of the Pea3 binding sites (5′- GCCTATGGC-3′).
T13234 546-549 NN denotes pTP
T13235 550-558 NN denotes 5xETSmut
T13236 549-550 HYPH denotes -
T13237 563-572 VBN denotes generated
T13238 559-562 VBD denotes was
T13239 573-575 IN denotes as
T13240 576-579 NN denotes pTP
T13241 580-585 NN denotes 5xETS
T13242 579-580 HYPH denotes -
T13243 586-589 CC denotes but
T13244 590-595 VBG denotes using
T13245 596-597 DT denotes a
T13246 606-616 NN denotes complement
T13247 598-605 VBN denotes mutated
T13248 617-619 IN denotes of
T13249 620-623 DT denotes the
T13250 637-642 NNS denotes sites
T13251 624-628 NN denotes Pea3
T13252 629-636 NN denotes binding
T13253 643-644 -LRB- denotes (
T13254 658-659 CD denotes 3
T13255 644-645 CD denotes 5
T13256 645-646 SYM denotes ′
T13257 646-647 HYPH denotes -
T13258 648-657 NN denotes GCCTATGGC
T13259 657-658 HYPH denotes -
T13260 659-660 SYM denotes ′
T13261 660-661 -RRB- denotes )
T13262 661-662 . denotes .
T13263 662-771 sentence denotes A control plasmid to normalize for transfection efficiency (placZ) and pTK-Luc were a gift from D. Kressler.
T13264 663-664 DT denotes A
T13265 673-680 NN denotes plasmid
T13266 665-672 NN denotes control
T13267 742-746 VBD denotes were
T13268 681-683 TO denotes to
T13269 684-693 VB denotes normalize
T13270 694-697 IN denotes for
T13271 698-710 NN denotes transfection
T13272 711-721 NN denotes efficiency
T13273 722-723 -LRB- denotes (
T13274 723-728 NN denotes placZ
T13275 728-729 -RRB- denotes )
T13276 730-733 CC denotes and
T13277 734-737 NN denotes pTK
T13278 738-741 NN denotes Luc
T13279 737-738 HYPH denotes -
T13280 747-748 DT denotes a
T13281 749-753 NN denotes gift
T13282 754-758 IN denotes from
T13283 759-761 NNP denotes D.
T13284 762-770 NNP denotes Kressler
T13285 770-771 . denotes .
T13286 771-986 sentence denotes COS-7 cells were co-transfected with 1–1.2 μg of total DNA including one of the effector plasmids pRc/RSV-empty, pRc/RSV-Er81, or pRc/RSV-EWS-Pea3; one of the reporter plasmids pTP-5xETS or pTP-5xETSmut; and placZ.
T13287 772-775 NN denotes COS
T13288 778-783 NNS denotes cells
T13289 775-776 HYPH denotes -
T13290 776-777 CD denotes 7
T13291 789-803 VBN denotes co-transfected
T13292 784-788 VBD denotes were
T13293 804-808 IN denotes with
T13294 809-810 CD denotes 1
T13295 811-814 CD denotes 1.2
T13296 810-811 SYM denotes –
T13297 815-817 NN denotes μg
T13298 818-820 IN denotes of
T13299 821-826 JJ denotes total
T13300 827-830 NN denotes DNA
T13301 831-840 VBG denotes including
T13302 841-844 CD denotes one
T13303 845-847 IN denotes of
T13304 848-851 DT denotes the
T13305 861-869 NNS denotes plasmids
T13306 852-860 NN denotes effector
T13307 870-873 NN denotes pRc
T13308 874-877 NN denotes RSV
T13309 873-874 HYPH denotes /
T13310 877-878 HYPH denotes -
T13311 878-883 JJ denotes empty
T13312 883-885 , denotes ,
T13313 885-888 NN denotes pRc
T13314 889-892 NN denotes RSV
T13315 888-889 HYPH denotes /
T13316 893-897 NN denotes Er81
T13317 892-893 HYPH denotes -
T13318 897-899 , denotes ,
T13319 899-901 CC denotes or
T13320 902-905 NN denotes pRc
T13321 906-909 NN denotes RSV
T13322 905-906 HYPH denotes /
T13323 914-918 NN denotes Pea3
T13324 909-910 HYPH denotes -
T13325 910-913 NN denotes EWS
T13326 913-914 HYPH denotes -
T13327 918-919 : denotes ;
T13328 920-923 CD denotes one
T13329 924-926 IN denotes of
T13330 927-930 DT denotes the
T13331 940-948 NNS denotes plasmids
T13332 931-939 NN denotes reporter
T13333 949-952 NN denotes pTP
T13334 953-958 NN denotes 5xETS
T13335 952-953 HYPH denotes -
T13336 959-961 CC denotes or
T13337 962-965 NN denotes pTP
T13338 966-974 NN denotes 5xETSmut
T13339 965-966 HYPH denotes -
T13340 974-975 : denotes ;
T13341 976-979 CC denotes and
T13342 980-985 NN denotes placZ
T13343 985-986 . denotes .
T13344 986-1115 sentence denotes Cells were harvested after 25 h and processed for assays to determine luciferase and LacZ activity as described previously [44].
T13345 987-992 NNS denotes Cells
T13346 998-1007 VBN denotes harvested
T13347 993-997 VBD denotes were
T13348 1008-1013 IN denotes after
T13349 1014-1016 CD denotes 25
T13350 1017-1018 NN denotes h
T13351 1019-1022 CC denotes and
T13352 1023-1032 VBN denotes processed
T13353 1033-1036 IN denotes for
T13354 1037-1043 NNS denotes assays
T13355 1044-1046 TO denotes to
T13356 1047-1056 VB denotes determine
T13357 1057-1067 NN denotes luciferase
T13358 1077-1085 NN denotes activity
T13359 1068-1071 CC denotes and
T13360 1072-1076 NN denotes LacZ
T13361 1086-1088 IN denotes as
T13362 1089-1098 VBN denotes described
T13363 1099-1109 RB denotes previously
T13364 1110-1111 -LRB- denotes [
T13365 1111-1113 CD denotes 44
T13366 1113-1114 -RRB- denotes ]
T13367 1114-1115 . denotes .
T13368 1115-1198 sentence denotes Luciferase values normalized to LacZ activity are referred to as luciferase units.
T13369 1116-1126 NN denotes Luciferase
T13370 1127-1133 NNS denotes values
T13371 1166-1174 VBN denotes referred
T13372 1134-1144 VBN denotes normalized
T13373 1145-1147 IN denotes to
T13374 1148-1152 NN denotes LacZ
T13375 1153-1161 NN denotes activity
T13376 1162-1165 VBP denotes are
T13377 1175-1177 IN denotes to
T13378 1178-1180 IN denotes as
T13379 1181-1191 NN denotes luciferase
T13380 1192-1197 NNS denotes units
T13381 1197-1198 . denotes .
R5741 T13099 T13100 amod Transcriptional,transactivation
R5742 T13100 T13101 compound transactivation,assays
R5743 T13103 T13104 det The,plasmids
R5744 T13104 T13106 nsubjpass plasmids,used
R5745 T13105 T13104 amod following,plasmids
R5746 T13107 T13106 auxpass were,used
R5747 T13108 T13106 prep for,used
R5748 T13109 T13110 amod transcriptional,assays
R5749 T13110 T13108 pobj assays,for
R5750 T13111 T13110 compound transactivation,assays
R5751 T13112 T13106 punct : ,used
R5752 T13113 T13114 compound pRc,RSV
R5753 T13114 T13106 dobj RSV,used
R5754 T13115 T13114 punct /,RSV
R5755 T13116 T13117 punct (,Invitrogen
R5756 T13117 T13114 parataxis Invitrogen,RSV
R5757 T13118 T13117 punct ", ",Invitrogen
R5758 T13119 T13117 npadvmod Carlsbad,Invitrogen
R5759 T13120 T13117 punct ", ",Invitrogen
R5760 T13121 T13117 npadvmod California,Invitrogen
R5761 T13122 T13117 punct ", ",Invitrogen
R5762 T13123 T13124 compound United,States
R5763 T13124 T13117 npadvmod States,Invitrogen
R5764 T13125 T13117 punct ),Invitrogen
R5765 T13126 T13114 punct ", ",RSV
R5766 T13127 T13128 compound pRc,RSV
R5767 T13128 T13130 compound RSV,Er81
R5768 T13129 T13128 punct /,RSV
R5769 T13130 T13114 conj Er81,RSV
R5770 T13131 T13130 punct -,Er81
R5771 T13132 T13130 punct ", ",Er81
R5772 T13133 T13134 compound pRc,RSV
R5773 T13134 T13136 compound RSV,Pea3
R5774 T13135 T13134 punct /,RSV
R5775 T13136 T13130 conj Pea3,Er81
R5776 T13137 T13136 punct -,Pea3
R5777 T13138 T13136 compound EWS,Pea3
R5778 T13139 T13136 punct -,Pea3
R5779 T13140 T13136 punct ", ",Pea3
R5780 T13141 T13142 compound pTP,5xETS
R5781 T13142 T13136 conj 5xETS,Pea3
R5782 T13143 T13142 punct -,5xETS
R5783 T13144 T13142 punct ", ",5xETS
R5784 T13145 T13142 cc and,5xETS
R5785 T13146 T13147 compound pTP,5xETSmut
R5786 T13147 T13142 conj 5xETSmut,5xETS
R5787 T13148 T13147 punct -,5xETSmut
R5788 T13149 T13106 punct .,used
R5789 T13151 T13152 compound pRc,RSV
R5790 T13152 T13154 compound RSV,Er81
R5791 T13153 T13152 punct /,RSV
R5792 T13154 T13156 nsubjpass Er81,obtained
R5793 T13155 T13154 punct -,Er81
R5794 T13157 T13154 cc and,Er81
R5795 T13158 T13159 compound pRc,RSV
R5796 T13159 T13161 compound RSV,Pea3
R5797 T13160 T13159 punct /,RSV
R5798 T13161 T13154 conj Pea3,Er81
R5799 T13162 T13161 punct -,Pea3
R5800 T13163 T13161 compound EWS,Pea3
R5801 T13164 T13161 punct -,Pea3
R5802 T13165 T13156 auxpass were,obtained
R5803 T13166 T13156 prep by,obtained
R5804 T13167 T13166 pobj insertion,by
R5805 T13168 T13167 prep of,insertion
R5806 T13169 T13170 det the,cDNAs
R5807 T13170 T13168 pobj cDNAs,of
R5808 T13171 T13170 prep for,cDNAs
R5809 T13172 T13171 pobj Er81,for
R5810 T13173 T13172 cc or,Er81
R5811 T13174 T13175 compound EWS,Pea3
R5812 T13175 T13172 conj Pea3,Er81
R5813 T13176 T13175 punct -,Pea3
R5814 T13177 T13178 punct (,gift
R5815 T13178 T13175 parataxis gift,Pea3
R5816 T13179 T13178 prep from,gift
R5817 T13180 T13181 compound J.,Hassell
R5818 T13181 T13179 pobj Hassell,from
R5819 T13182 T13181 compound A.,Hassell
R5820 T13183 T13178 punct ),gift
R5821 T13184 T13167 prep into,insertion
R5822 T13185 T13186 compound pRc,RSV
R5823 T13186 T13184 pobj RSV,into
R5824 T13187 T13186 punct /,RSV
R5825 T13188 T13156 punct .,obtained
R5826 T13190 T13191 compound pTP,5xETS
R5827 T13191 T13193 nsubjpass 5xETS,constructed
R5828 T13192 T13191 punct -,5xETS
R5829 T13194 T13193 auxpass was,constructed
R5830 T13195 T13193 prep by,constructed
R5831 T13196 T13195 pcomp inserting,by
R5832 T13197 T13198 det a,cassette
R5833 T13198 T13196 dobj cassette,inserting
R5834 T13199 T13198 prep of,cassette
R5835 T13200 T13201 nummod five,copies
R5836 T13201 T13199 pobj copies,of
R5837 T13202 T13201 amod repetitive,copies
R5838 T13203 T13201 prep of,copies
R5839 T13204 T13205 amod high,affinity
R5840 T13205 T13207 compound affinity,sites
R5841 T13206 T13205 punct -,affinity
R5842 T13207 T13203 pobj sites,of
R5843 T13208 T13207 compound Pea3,sites
R5844 T13209 T13207 compound binding,sites
R5845 T13210 T13211 punct (,3
R5846 T13211 T13207 parataxis 3,sites
R5847 T13212 T13211 dep 5,3
R5848 T13213 T13212 punct ′,5
R5849 T13214 T13211 punct -,3
R5850 T13215 T13211 dep GCCGGAAGC,3
R5851 T13216 T13211 punct -,3
R5852 T13217 T13211 punct ′,3
R5853 T13218 T13211 punct ),3
R5854 T13219 T13220 punct [,19
R5855 T13220 T13207 parataxis 19,sites
R5856 T13221 T13220 nummod 18,19
R5857 T13222 T13220 punct ",",19
R5858 T13223 T13220 punct ],19
R5859 T13224 T13196 prep into,inserting
R5860 T13225 T13226 det a,version
R5861 T13226 T13224 pobj version,into
R5862 T13227 T13226 amod modified,version
R5863 T13228 T13226 prep of,version
R5864 T13229 T13230 compound pTK,Luc
R5865 T13230 T13228 pobj Luc,of
R5866 T13231 T13230 punct -,Luc
R5867 T13232 T13193 punct .,constructed
R5868 T13234 T13235 compound pTP,5xETSmut
R5869 T13235 T13237 nsubjpass 5xETSmut,generated
R5870 T13236 T13235 punct -,5xETSmut
R5871 T13238 T13237 auxpass was,generated
R5872 T13239 T13237 prep as,generated
R5873 T13240 T13241 compound pTP,5xETS
R5874 T13241 T13239 pobj 5xETS,as
R5875 T13242 T13241 punct -,5xETS
R5876 T13243 T13239 cc but,as
R5877 T13244 T13239 conj using,as
R5878 T13245 T13246 det a,complement
R5879 T13246 T13244 dobj complement,using
R5880 T13247 T13246 amod mutated,complement
R5881 T13248 T13246 prep of,complement
R5882 T13249 T13250 det the,sites
R5883 T13250 T13248 pobj sites,of
R5884 T13251 T13250 compound Pea3,sites
R5885 T13252 T13250 compound binding,sites
R5886 T13253 T13254 punct (,3
R5887 T13254 T13246 parataxis 3,complement
R5888 T13255 T13254 dep 5,3
R5889 T13256 T13255 punct ′,5
R5890 T13257 T13254 punct -,3
R5891 T13258 T13254 dep GCCTATGGC,3
R5892 T13259 T13254 punct -,3
R5893 T13260 T13254 punct ′,3
R5894 T13261 T13254 punct ),3
R5895 T13262 T13237 punct .,generated
R5896 T13264 T13265 det A,plasmid
R5897 T13265 T13267 nsubj plasmid,were
R5898 T13266 T13265 compound control,plasmid
R5899 T13268 T13269 aux to,normalize
R5900 T13269 T13265 advcl normalize,plasmid
R5901 T13270 T13269 prep for,normalize
R5902 T13271 T13272 compound transfection,efficiency
R5903 T13272 T13270 pobj efficiency,for
R5904 T13273 T13274 punct (,placZ
R5905 T13274 T13272 parataxis placZ,efficiency
R5906 T13275 T13274 punct ),placZ
R5907 T13276 T13272 cc and,efficiency
R5908 T13277 T13278 compound pTK,Luc
R5909 T13278 T13272 conj Luc,efficiency
R5910 T13279 T13278 punct -,Luc
R5911 T13280 T13281 det a,gift
R5912 T13281 T13267 attr gift,were
R5913 T13282 T13281 prep from,gift
R5914 T13283 T13284 compound D.,Kressler
R5915 T13284 T13282 pobj Kressler,from
R5916 T13285 T13267 punct .,were
R5917 T13287 T13288 nmod COS,cells
R5918 T13288 T13291 nsubjpass cells,co-transfected
R5919 T13289 T13287 punct -,COS
R5920 T13290 T13287 nummod 7,COS
R5921 T13292 T13291 auxpass were,co-transfected
R5922 T13293 T13291 prep with,co-transfected
R5923 T13294 T13295 quantmod 1,1.2
R5924 T13295 T13297 nummod 1.2,μg
R5925 T13296 T13295 punct –,1.2
R5926 T13297 T13293 pobj μg,with
R5927 T13298 T13297 prep of,μg
R5928 T13299 T13300 amod total,DNA
R5929 T13300 T13298 pobj DNA,of
R5930 T13301 T13297 prep including,μg
R5931 T13302 T13301 pobj one,including
R5932 T13303 T13302 prep of,one
R5933 T13304 T13305 det the,plasmids
R5934 T13305 T13303 pobj plasmids,of
R5935 T13306 T13305 compound effector,plasmids
R5936 T13307 T13308 compound pRc,RSV
R5937 T13308 T13302 appos RSV,one
R5938 T13309 T13308 punct /,RSV
R5939 T13310 T13308 punct -,RSV
R5940 T13311 T13308 amod empty,RSV
R5941 T13312 T13308 punct ", ",RSV
R5942 T13313 T13314 compound pRc,RSV
R5943 T13314 T13316 compound RSV,Er81
R5944 T13315 T13314 punct /,RSV
R5945 T13316 T13308 conj Er81,RSV
R5946 T13317 T13316 punct -,Er81
R5947 T13318 T13316 punct ", ",Er81
R5948 T13319 T13316 cc or,Er81
R5949 T13320 T13321 compound pRc,RSV
R5950 T13321 T13323 compound RSV,Pea3
R5951 T13322 T13321 punct /,RSV
R5952 T13323 T13316 conj Pea3,Er81
R5953 T13324 T13323 punct -,Pea3
R5954 T13325 T13323 compound EWS,Pea3
R5955 T13326 T13323 punct -,Pea3
R5956 T13327 T13302 punct ;,one
R5957 T13328 T13302 conj one,one
R5958 T13329 T13328 prep of,one
R5959 T13330 T13331 det the,plasmids
R5960 T13331 T13329 pobj plasmids,of
R5961 T13332 T13331 compound reporter,plasmids
R5962 T13333 T13334 compound pTP,5xETS
R5963 T13334 T13328 appos 5xETS,one
R5964 T13335 T13334 punct -,5xETS
R5965 T13336 T13334 cc or,5xETS
R5966 T13337 T13338 compound pTP,5xETSmut
R5967 T13338 T13334 conj 5xETSmut,5xETS
R5968 T13339 T13338 punct -,5xETSmut
R5969 T13340 T13328 punct ;,one
R5970 T13341 T13328 cc and,one
R5971 T13342 T13328 conj placZ,one
R5972 T13343 T13291 punct .,co-transfected
R5973 T13345 T13346 nsubjpass Cells,harvested
R5974 T13347 T13346 auxpass were,harvested
R5975 T13348 T13346 prep after,harvested
R5976 T13349 T13350 nummod 25,h
R5977 T13350 T13348 pobj h,after
R5978 T13351 T13346 cc and,harvested
R5979 T13352 T13346 conj processed,harvested
R5980 T13353 T13352 prep for,processed
R5981 T13354 T13353 pobj assays,for
R5982 T13355 T13356 aux to,determine
R5983 T13356 T13352 advcl determine,processed
R5984 T13357 T13358 nmod luciferase,activity
R5985 T13358 T13356 dobj activity,determine
R5986 T13359 T13357 cc and,luciferase
R5987 T13360 T13357 conj LacZ,luciferase
R5988 T13361 T13362 mark as,described
R5989 T13362 T13356 advcl described,determine
R5990 T13363 T13362 advmod previously,described
R5991 T13364 T13365 punct [,44
R5992 T13365 T13352 parataxis 44,processed
R5993 T13366 T13365 punct ],44
R5994 T13367 T13346 punct .,harvested
R5995 T13369 T13370 compound Luciferase,values
R5996 T13370 T13371 nsubjpass values,referred
R5997 T13372 T13370 acl normalized,values
R5998 T13373 T13372 prep to,normalized
R5999 T13374 T13375 compound LacZ,activity
R6000 T13375 T13373 pobj activity,to
R6001 T13376 T13371 auxpass are,referred
R6002 T13377 T13371 prep to,referred
R6003 T13378 T13371 prep as,referred
R6004 T13379 T13380 compound luciferase,units
R6005 T13380 T13378 pobj units,as
R6006 T13381 T13371 punct .,referred

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13047 0-15 GO_EXT:transcription denotes Transcriptional
T13048 53-61 SO_EXT:0000155 denotes plasmids
T13049 76-91 GO_EXT:transcription denotes transcriptional
T13050 120-123 NCBITaxon:11886 denotes RSV
T13051 179-182 NCBITaxon:11886 denotes RSV
T13052 183-187 PR_EXT:000007223 denotes Er81
T13053 193-196 NCBITaxon:11886 denotes RSV
T13054 197-200 PR_EXT:000007243 denotes EWS
T13055 201-205 PR_EXT:000007227 denotes Pea3
T13056 240-243 NCBITaxon:11886 denotes RSV
T13057 244-248 PR_EXT:000007223 denotes Er81
T13058 257-260 NCBITaxon:11886 denotes RSV
T13059 261-264 PR_EXT:000007243 denotes EWS
T13060 265-269 PR_EXT:000007227 denotes Pea3
T13061 287-296 SO_EXT:sequence_insertion_entity_or_process denotes insertion
T13062 304-309 SO_EXT:cDNA denotes cDNAs
T13063 314-318 PR_EXT:000007223 denotes Er81
T13064 322-325 PR_EXT:000007243 denotes EWS
T13065 326-330 PR_EXT:000007227 denotes Pea3
T13066 366-369 NCBITaxon:11886 denotes RSV
T13067 400-409 SO_EXT:sequence_insertion_process denotes inserting
T13068 412-420 SO_EXT:0005853 denotes cassette
T13069 429-439 SO_EXT:sequence_repeat_unit_or_region denotes repetitive
T13070 440-446 SO_EXT:sequence_copy_entity denotes copies
T13071 464-468 PR_EXT:000007227 denotes Pea3
T13072 469-476 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T13073 469-482 SO_EXT:0000409 denotes binding sites
T13074 517-525 SO_EXT:sequence_alteration_process denotes modified
T13075 598-605 SO_EXT:sequence_alteration_process denotes mutated
T13076 624-628 PR_EXT:000007227 denotes Pea3
T13077 629-636 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T13078 629-642 SO_EXT:0000409 denotes binding sites
T13079 673-680 SO_EXT:0000155 denotes plasmid
T13080 698-710 GO:0009294 denotes transfection
T13081 778-783 CL_GO_EXT:cell denotes cells
T13082 792-803 GO:0009294 denotes transfected
T13083 827-830 CHEBI_SO_EXT:DNA denotes DNA
T13084 852-860 CHEBI_EXT:35224 denotes effector
T13085 861-869 SO_EXT:0000155 denotes plasmids
T13086 874-877 NCBITaxon:11886 denotes RSV
T13087 889-892 NCBITaxon:11886 denotes RSV
T13088 893-897 PR_EXT:000007223 denotes Er81
T13089 906-909 NCBITaxon:11886 denotes RSV
T13090 910-913 PR_EXT:000007243 denotes EWS
T13091 914-918 PR_EXT:000007227 denotes Pea3
T13092 940-948 SO_EXT:0000155 denotes plasmids
T13093 987-992 CL_GO_EXT:cell denotes Cells
T13094 1057-1067 GO_EXT:0045289 denotes luciferase
T13095 1072-1076 PR_EXT:000033987 denotes LacZ
T13096 1116-1126 GO_EXT:0045289 denotes Luciferase
T13097 1148-1152 PR_EXT:000033987 denotes LacZ
T13098 1181-1191 GO_EXT:0045289 denotes luciferase

2_test

Id Subject Object Predicate Lexical cue
15836427-9734357-84719674 503-505 9734357 denotes 18
15836427-11096072-84719675 506-508 11096072 denotes 19
15836427-11854298-84719676 1111-1113 11854298 denotes 44
T37045 503-505 9734357 denotes 18
T55400 506-508 11096072 denotes 19
T31145 1111-1113 11854298 denotes 44

biosemtest

Id Subject Object Predicate Lexical cue
T12881 1034-1043 UMLS/C1709694 denotes or assays
T12882 1034-1043 UMLS/C1551390 denotes or assays
T12883 530-537 UMLS/C0333052 denotes ion of
T12884 673-680 UMLS/C1882979 denotes plasmid
T12885 673-680 UMLS/C1550141 denotes plasmid
T12886 521-529 UMLS/C0205349 denotes fied ver
T12887 1177-1188 UMLS/C1551375 denotes as lucifer
T12888 287-296 UMLS/C1883719 denotes insertion
T12889 400-409 UMLS/C1883719 denotes inserting
T12890 16-31 UMLS/C0040624 denotes transactivation
T12891 92-107 UMLS/C0040624 denotes transactivation
T12892 120-123 UMLS/C0035236 denotes RSV
T12893 366-369 UMLS/C0035236 denotes RSV
T12894 1083-1087 UMLS/C0022959 denotes ty a
T12895 1159-1163 UMLS/C0022959 denotes ty a
T12896 455-463 UMLS/C1510827 denotes affinity
T12897 942-950 UMLS/C1709908 denotes asmids p
T12898 1034-1043 UMLS/C1522240 denotes or assays
T12899 689-691 UMLS/C0319022 denotes li
T12900 1055-1057 UMLS/C0319022 denotes e
T12901 1156-1158 UMLS/C0319022 denotes iv
T12902 590-593 UMLS/C0005341 denotes usi
T12903 53-61 UMLS/C0032136 denotes plasmids
T12904 681-688 UMLS/C0032136 denotes to norm
T12905 872-880 UMLS/C0032136 denotes c/RSV-em
T12906 951-959 UMLS/C0032136 denotes P-5xETS
T12907 1068-1078 UMLS/C0024075 denotes and LacZ a
T12908 1127-1137 UMLS/C0024075 denotes values nor
T12909 287-296 UMLS/C1512796 denotes insertion
T12910 1088-1096 UMLS/C0441655 denotes describ
T12911 1164-1172 UMLS/C0441655 denotes e referr
T12912 838-841 UMLS/C1325786 denotes ng
T12913 521-529 UMLS/C0392747 denotes fied ver
T12914 450-454 UMLS/C1522410 denotes high
T12915 1138-1144 UMLS/C1554112 denotes alized
T12916 942-950 UMLS/C1522485 denotes asmids p
T12917 673-680 UMLS/C1547100 denotes plasmid
T12918 998-1003 UMLS/C1269647 denotes harve
T12919 147-157 UMLS/C0006754 denotes California
T12920 400-409 UMLS/C1549539 denotes inserting
T12921 842-851 UMLS/C1552866 denotes ne of the
T12922 1138-1144 UMLS/C1704610 denotes alized
T12923 159-172 UMLS/C0041703 denotes United States
T12924 424-428 UMLS/C1533153 denotes five
T12925 852-855 UMLS/C0205447 denotes eff
T12926 931-934 UMLS/C0205447 denotes rep
T12927 412-420 UMLS/C0450240 denotes cassette
T12928 400-409 UMLS/C1705172 denotes inserting
T12929 43-52 UMLS/C1719822 denotes following
T12930 32-38 UMLS/C0243073 denotes assays
T12931 108-114 UMLS/C0243073 denotes assays
T12932 1048-1054 UMLS/C0243073 denotes etermi
T12933 424-428 UMLS/C0205451 denotes five
T12934 0-15 UMLS/C0040649 denotes Transcriptional
T12935 76-91 UMLS/C0040649 denotes transcriptional
T12936 719-729 UMLS/C0013682 denotes cy (placZ)
T12937 780-791 UMLS/C1257858 denotes lls were co
T12938 120-123 UMLS/C0086943 denotes RSV
T12939 366-369 UMLS/C0086943 denotes RSV
T12940 1138-1144 UMLS/C0042295 denotes alized
T12941 1058-1067 UMLS/C0521095 denotes uciferase
T12942 706-718 UMLS/C0040669 denotes tion efficie
T12943 998-1003 UMLS/C1704653 denotes harve
T12944 1088-1096 UMLS/C1561536 denotes describ
T12945 1164-1172 UMLS/C1561536 denotes e referr
T12946 400-409 UMLS/C1743766 denotes inserting
T12947 412-420 UMLS/C1706210 denotes cassette
T12948 673-680 UMLS/C0243148 denotes plasmid
T12949 1088-1096 UMLS/C0439167 denotes describ
T12950 1164-1172 UMLS/C0439167 denotes e referr
T12951 32-38 UMLS/C0005507 denotes assays
T12952 108-114 UMLS/C0005507 denotes assays
T12953 1048-1054 UMLS/C0005507 denotes etermi
T12954 832-837 UMLS/C0439175 denotes nclud
T12955 1009-1018 UMLS/C1512335 denotes fter 25 h
T12956 469-482 UMLS/C0005456 denotes binding sites
T12957 633-646 UMLS/C0005456 denotes ing sites (5′
T12958 385-396 UMLS/C0012931 denotes constructed
T12959 450-454 UMLS/C1561958 denotes high
T12960 450-454 UMLS/C1561957 denotes high
T12961 942-950 UMLS/C0335038 denotes asmids p
T12962 673-680 UMLS/C0009932 denotes plasmid
T12963 1177-1188 UMLS/C0205543 denotes as lucifer
T12964 1019-1024 UMLS/C0687676 denotes and p
T12965 412-420 UMLS/C2347567 denotes cassette
T12966 332-336 UMLS/C1136188 denotes gift
T12967 757-761 UMLS/C1136188 denotes m D.
T12968 692-701 UMLS/C1882115 denotes e for tra
T12969 1145-1155 UMLS/C1882115 denotes to LacZ ac
T12970 530-537 UMLS/C2607870 denotes ion of
T12971 450-454 UMLS/C0205250 denotes high
T12972 942-950 UMLS/C1705915 denotes asmids p
T12973 147-157 UMLS/C0324542 denotes California
T12974 842-851 UMLS/C2700399 denotes ne of the
T12975 838-841 UMLS/C0012854 denotes ng
T12976 602-609 UMLS/C1513776 denotes ted com
T12977 275-283 UMLS/C1301820 denotes obtained
T12978 673-680 UMLS/C0332298 denotes plasmid
T12979 1100-1109 UMLS/C1552738 denotes reviously
T12980 1034-1043 UMLS/C1550044 denotes or assays
T12981 287-296 UMLS/C1705421 denotes insertion
T12982 43-52 UMLS/C0332282 denotes following
T12983 998-1003 UMLS/C0007634 denotes harve
T12984 400-409 UMLS/C1881216 denotes inserting
T12985 998-1003 UMLS/C1948049 denotes harve
T12986 43-52 UMLS/C0332283 denotes following
T12987 400-409 UMLS/C1881217 denotes inserting
T12988 400-409 UMLS/C1292748 denotes inserting
T12989 842-851 UMLS/C0332257 denotes ne of the
T12990 440-446 UMLS/C1948062 denotes copies
T12991 832-837 UMLS/C0439810 denotes nclud
T12992 1019-1024 UMLS/C0231290 denotes and p
T12993 275-283 UMLS/C1706701 denotes obtained
T12994 32-38 UMLS/C1510438 denotes assays
T12995 108-114 UMLS/C1510438 denotes assays
T12996 1048-1054 UMLS/C1510438 denotes etermi
T12997 998-1003 UMLS/C1136359 denotes harve
T12998 602-609 UMLS/C0026882 denotes ted com
T12999 610-620 UMLS/C0009498 denotes lement of
T13000 332-336 UMLS/C0423899 denotes gift
T13001 757-761 UMLS/C0423899 denotes m D.
T13002 1034-1043 UMLS/C1184743 denotes or assays
T13003 1177-1188 UMLS/C1555599 denotes as lucifer
T13004 450-454 UMLS/C1299351 denotes high
T13005 469-482 UMLS/C0682969 denotes binding sites
T13006 633-646 UMLS/C0682969 denotes ing sites (5′
T13007 673-680 UMLS/C2587213 denotes plasmid
T13008 1138-1144 UMLS/C1522609 denotes alized
T13009 287-296 UMLS/C0441587 denotes insertion
T13010 400-409 UMLS/C0441587 denotes inserting
T13011 440-446 UMLS/C0009992 denotes copies

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13012 53-61 SO:0000155 denotes plasmids
T13013 120-123 NCBITaxon:11886 denotes RSV
T13014 179-182 NCBITaxon:11886 denotes RSV
T13015 183-187 PR:000007223 denotes Er81
T13016 193-196 NCBITaxon:11886 denotes RSV
T13017 197-200 PR:000007243 denotes EWS
T13018 201-205 PR:000007227 denotes Pea3
T13019 240-243 NCBITaxon:11886 denotes RSV
T13020 244-248 PR:000007223 denotes Er81
T13021 257-260 NCBITaxon:11886 denotes RSV
T13022 261-264 PR:000007243 denotes EWS
T13023 265-269 PR:000007227 denotes Pea3
T13024 314-318 PR:000007223 denotes Er81
T13025 322-325 PR:000007243 denotes EWS
T13026 326-330 PR:000007227 denotes Pea3
T13027 366-369 NCBITaxon:11886 denotes RSV
T13028 412-420 SO:0005853 denotes cassette
T13029 464-468 PR:000007227 denotes Pea3
T13030 469-482 SO:0000409 denotes binding sites
T13031 624-628 PR:000007227 denotes Pea3
T13032 629-642 SO:0000409 denotes binding sites
T13033 673-680 SO:0000155 denotes plasmid
T13034 698-710 GO:0009294 denotes transfection
T13035 792-803 GO:0009294 denotes transfected
T13036 852-860 CHEBI:35224 denotes effector
T13037 861-869 SO:0000155 denotes plasmids
T13038 874-877 NCBITaxon:11886 denotes RSV
T13039 889-892 NCBITaxon:11886 denotes RSV
T13040 893-897 PR:000007223 denotes Er81
T13041 906-909 NCBITaxon:11886 denotes RSV
T13042 910-913 PR:000007243 denotes EWS
T13043 914-918 PR:000007227 denotes Pea3
T13044 940-948 SO:0000155 denotes plasmids
T13045 1072-1076 PR:000033987 denotes LacZ
T13046 1148-1152 PR:000033987 denotes LacZ