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PMC:1084331 / 40499-40743 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12652 0-244 sentence denotes An IRES-Cre-pA targeting cassette [33] was integrated into the 3′ UTR of exon 5, and ES cell recombinants were screened with a 5′ probe (oligos, 5′- GAGATGACCCAGCCAGGATGCCTC-3′ and 5′- CTGACCACTCTCGCTCCGGTGTCC-3′; genomic DNA, HindIII digest).
T12653 1-3 DT denotes An
T12654 26-34 NN denotes cassette
T12655 4-8 NN denotes IRES
T12656 13-15 NN denotes pA
T12657 8-9 HYPH denotes -
T12658 9-12 NN denotes Cre
T12659 12-13 HYPH denotes -
T12660 16-25 NN denotes targeting
T12661 44-54 VBN denotes integrated
T12662 35-36 -LRB- denotes [
T12663 36-38 CD denotes 33
T12664 38-39 -RRB- denotes ]
T12665 40-43 VBD denotes was
T12666 55-59 IN denotes into
T12667 60-63 DT denotes the
T12668 67-70 NN denotes UTR
T12669 64-65 CD denotes 3
T12670 65-66 SYM denotes ′
T12671 71-73 IN denotes of
T12672 74-78 NN denotes exon
T12673 79-80 CD denotes 5
T12674 80-82 , denotes ,
T12675 82-85 CC denotes and
T12676 86-88 NN denotes ES
T12677 94-106 NNS denotes recombinants
T12678 89-93 NN denotes cell
T12679 112-120 VBN denotes screened
T12680 107-111 VBD denotes were
T12681 121-125 IN denotes with
T12682 126-127 DT denotes a
T12683 131-136 NN denotes probe
T12684 128-129 CD denotes 5
T12685 129-130 SYM denotes ′
T12686 137-138 -LRB- denotes (
T12687 236-242 NN denotes digest
T12688 138-144 NNS denotes oligos
T12689 144-146 , denotes ,
T12690 146-147 CD denotes 5
T12691 150-174 NN denotes GAGATGACCCAGCCAGGATGCCTC
T12692 147-148 SYM denotes ′
T12693 148-149 HYPH denotes -
T12694 174-175 HYPH denotes -
T12695 175-176 CD denotes 3
T12696 176-177 SYM denotes ′
T12697 178-181 CC denotes and
T12698 182-183 CD denotes 5
T12699 186-210 NN denotes CTGACCACTCTCGCTCCGGTGTCC
T12700 183-184 SYM denotes ′
T12701 184-185 HYPH denotes -
T12702 210-211 HYPH denotes -
T12703 211-212 CD denotes 3
T12704 212-213 SYM denotes ′
T12705 213-214 : denotes ;
T12706 215-222 JJ denotes genomic
T12707 223-226 NN denotes DNA
T12708 226-228 , denotes ,
T12709 228-235 NN denotes HindIII
T12710 242-243 -RRB- denotes )
T12711 243-244 . denotes .
R5545 T12653 T12654 det An,cassette
R5546 T12654 T12661 nsubjpass cassette,integrated
R5547 T12655 T12656 compound IRES,pA
R5548 T12656 T12654 compound pA,cassette
R5549 T12657 T12656 punct -,pA
R5550 T12658 T12656 compound Cre,pA
R5551 T12659 T12656 punct -,pA
R5552 T12660 T12654 compound targeting,cassette
R5553 T12662 T12663 punct [,33
R5554 T12663 T12654 parataxis 33,cassette
R5555 T12664 T12663 punct ],33
R5556 T12665 T12661 auxpass was,integrated
R5557 T12666 T12661 prep into,integrated
R5558 T12667 T12668 det the,UTR
R5559 T12668 T12666 pobj UTR,into
R5560 T12669 T12668 nummod 3,UTR
R5561 T12670 T12669 punct ′,3
R5562 T12671 T12668 prep of,UTR
R5563 T12672 T12671 pobj exon,of
R5564 T12673 T12672 nummod 5,exon
R5565 T12674 T12661 punct ", ",integrated
R5566 T12675 T12661 cc and,integrated
R5567 T12676 T12677 compound ES,recombinants
R5568 T12677 T12679 nsubjpass recombinants,screened
R5569 T12678 T12677 compound cell,recombinants
R5570 T12679 T12661 conj screened,integrated
R5571 T12680 T12679 auxpass were,screened
R5572 T12681 T12679 prep with,screened
R5573 T12682 T12683 det a,probe
R5574 T12683 T12681 pobj probe,with
R5575 T12684 T12683 nummod 5,probe
R5576 T12685 T12684 punct ′,5
R5577 T12686 T12687 punct (,digest
R5578 T12687 T12679 parataxis digest,screened
R5579 T12688 T12687 dep oligos,digest
R5580 T12689 T12688 punct ", ",oligos
R5581 T12690 T12691 nummod 5,GAGATGACCCAGCCAGGATGCCTC
R5582 T12691 T12688 conj GAGATGACCCAGCCAGGATGCCTC,oligos
R5583 T12692 T12690 punct ′,5
R5584 T12693 T12691 punct -,GAGATGACCCAGCCAGGATGCCTC
R5585 T12694 T12691 punct -,GAGATGACCCAGCCAGGATGCCTC
R5586 T12695 T12691 nummod 3,GAGATGACCCAGCCAGGATGCCTC
R5587 T12696 T12691 punct ′,GAGATGACCCAGCCAGGATGCCTC
R5588 T12697 T12691 cc and,GAGATGACCCAGCCAGGATGCCTC
R5589 T12698 T12699 nummod 5,CTGACCACTCTCGCTCCGGTGTCC
R5590 T12699 T12691 conj CTGACCACTCTCGCTCCGGTGTCC,GAGATGACCCAGCCAGGATGCCTC
R5591 T12700 T12698 punct ′,5
R5592 T12701 T12699 punct -,CTGACCACTCTCGCTCCGGTGTCC
R5593 T12702 T12699 punct -,CTGACCACTCTCGCTCCGGTGTCC
R5594 T12703 T12699 nummod 3,CTGACCACTCTCGCTCCGGTGTCC
R5595 T12704 T12699 punct ′,CTGACCACTCTCGCTCCGGTGTCC
R5596 T12705 T12687 punct ;,digest
R5597 T12706 T12707 amod genomic,DNA
R5598 T12707 T12687 dep DNA,digest
R5599 T12708 T12687 punct ", ",digest
R5600 T12709 T12687 compound HindIII,digest
R5601 T12710 T12687 punct ),digest
R5602 T12711 T12679 punct .,screened

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12306 4-8 SO_EXT:0000243 denotes IRES
T12307 26-34 SO_EXT:0005853 denotes cassette
T12308 64-70 SO_EXT:0000205 denotes 3′ UTR
T12309 74-78 SO_EXT:0000147 denotes exon
T12310 86-93 CL:0002322 denotes ES cell
T12311 89-93 CL_GO_EXT:cell denotes cell
T12312 94-106 SO_EXT:sequence_recombinant_entity denotes recombinants
T12313 131-136 CHEBI_SO_EXT:molecular_probe denotes probe
T12314 138-144 CHEBI_SO_EXT:oligonucleotide denotes oligos
T12315 215-226 SO_EXT:genomic_DNA denotes genomic DNA
T12316 223-226 CHEBI_SO_EXT:DNA denotes DNA
T12317 228-235 PR_EXT:P43870 denotes HindIII

2_test

Id Subject Object Predicate Lexical cue
15836427-11395002-84719669 36-38 11395002 denotes 33
T12255 36-38 11395002 denotes 33

biosemtest

Id Subject Object Predicate Lexical cue
T11860 145-150 UMLS/C1704681 denotes 5′-
T11866 86-90 UMLS/C0015295 denotes ES c
T11868 145-150 UMLS/C0182400 denotes 5′-
T11913 36-44 UMLS/C1706210 denotes 33] was
T11919 145-150 UMLS/C0728863 denotes 5′-
T11928 124-132 UMLS/C0220909 denotes h a 5′ p
T11931 124-132 UMLS/C0220908 denotes h a 5′ p
T11934 124-132 UMLS/C1705053 denotes h a 5′ p
T11942 124-132 UMLS/C1305399 denotes h a 5′ p
T11952 146-152 UMLS/C0028953 denotes 5′- GA
T11958 124-132 UMLS/C1698960 denotes h a 5′ p
T11975 237-244 UMLS/C0017428 denotes igest).
T11985 124-132 UMLS/C0199230 denotes h a 5′ p
T12013 145-150 UMLS/C0419358 denotes 5′-
T12018 79-82 UMLS/C1420099 denotes 5,
T12037 79-82 UMLS/C0600680 denotes 5,
T12039 36-44 UMLS/C0450240 denotes 33] was
T12067 145-150 UMLS/C2347609 denotes 5′-
T12077 79-82 UMLS/C1540171 denotes 5,
T12083 36-44 UMLS/C2347567 denotes 33] was
T12088 26-35 UMLS/C1521840 denotes cassette
T12101 26-35 UMLS/C0599894 denotes cassette
T12103 145-150 UMLS/C1442917 denotes 5′-
T12111 98-105 UMLS/C0596508 denotes mbinant
T12116 106-118 UMLS/C1514798 denotes were screen
T12122 1-4 UMLS/C0042789 denotes An
T12129 124-132 UMLS/C1710031 denotes h a 5′ p
T12134 124-132 UMLS/C0430054 denotes h a 5′ p

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12205 4-8 SO:0000243 denotes IRES
T12206 26-34 SO:0005853 denotes cassette
T12207 64-70 SO:0000205 denotes 3′ UTR
T12208 74-78 SO:0000147 denotes exon
T12209 86-93 CL:0002322 denotes ES cell
T12210 215-222 SO:0001026 denotes genomic
T12211 228-235 PR:P43870 denotes HindIII