PMC:1084331 / 39720-40020
Annnotations
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12472 | 0-300 | sentence | denotes | For the generation of TaumGFP and TauEWS-Pea3 mice, lox-STOP-lox-mGFP-IRES-NLS-LacZ-pA and lox-STOP-lox-EWS-Pea3-IRES-NLS-LacZ-pA targeting cassettes were integrated into exon 2 of the Tau genomic locus (the endogenous start ATG was removed in the targeting vectors; details available upon request). |
| T12473 | 1-4 | IN | denotes | For |
| T12474 | 156-166 | VBN | denotes | integrated |
| T12475 | 5-8 | DT | denotes | the |
| T12476 | 9-19 | NN | denotes | generation |
| T12477 | 20-22 | IN | denotes | of |
| T12478 | 23-30 | NN | denotes | TaumGFP |
| T12479 | 47-51 | NNS | denotes | mice |
| T12480 | 31-34 | CC | denotes | and |
| T12481 | 35-41 | NN | denotes | TauEWS |
| T12482 | 42-46 | NN | denotes | Pea3 |
| T12483 | 41-42 | HYPH | denotes | - |
| T12484 | 51-53 | , | denotes | , |
| T12485 | 53-56 | NN | denotes | lox |
| T12486 | 85-87 | NN | denotes | pA |
| T12487 | 56-57 | HYPH | denotes | - |
| T12488 | 57-61 | NN | denotes | STOP |
| T12489 | 61-62 | HYPH | denotes | - |
| T12490 | 62-65 | NN | denotes | lox |
| T12491 | 65-66 | HYPH | denotes | - |
| T12492 | 66-70 | NN | denotes | mGFP |
| T12493 | 70-71 | HYPH | denotes | - |
| T12494 | 71-75 | NN | denotes | IRES |
| T12495 | 75-76 | HYPH | denotes | - |
| T12496 | 76-79 | NN | denotes | NLS |
| T12497 | 79-80 | HYPH | denotes | - |
| T12498 | 80-84 | NN | denotes | LacZ |
| T12499 | 84-85 | HYPH | denotes | - |
| T12500 | 141-150 | NNS | denotes | cassettes |
| T12501 | 88-91 | CC | denotes | and |
| T12502 | 92-95 | NN | denotes | lox |
| T12503 | 128-130 | NN | denotes | pA |
| T12504 | 95-96 | HYPH | denotes | - |
| T12505 | 96-100 | NN | denotes | STOP |
| T12506 | 100-101 | HYPH | denotes | - |
| T12507 | 101-104 | NN | denotes | lox |
| T12508 | 104-105 | HYPH | denotes | - |
| T12509 | 105-108 | NN | denotes | EWS |
| T12510 | 108-109 | HYPH | denotes | - |
| T12511 | 109-113 | NN | denotes | Pea3 |
| T12512 | 113-114 | HYPH | denotes | - |
| T12513 | 114-118 | NN | denotes | IRES |
| T12514 | 118-119 | HYPH | denotes | - |
| T12515 | 119-122 | NN | denotes | NLS |
| T12516 | 122-123 | HYPH | denotes | - |
| T12517 | 123-127 | NN | denotes | LacZ |
| T12518 | 127-128 | HYPH | denotes | - |
| T12519 | 131-140 | NN | denotes | targeting |
| T12520 | 151-155 | VBD | denotes | were |
| T12521 | 167-171 | IN | denotes | into |
| T12522 | 172-176 | NN | denotes | exon |
| T12523 | 177-178 | CD | denotes | 2 |
| T12524 | 179-181 | IN | denotes | of |
| T12525 | 182-185 | DT | denotes | the |
| T12526 | 198-203 | NN | denotes | locus |
| T12527 | 186-189 | NN | denotes | Tau |
| T12528 | 190-197 | JJ | denotes | genomic |
| T12529 | 204-205 | -LRB- | denotes | ( |
| T12530 | 234-241 | VBN | denotes | removed |
| T12531 | 205-208 | DT | denotes | the |
| T12532 | 226-229 | NN | denotes | ATG |
| T12533 | 209-219 | JJ | denotes | endogenous |
| T12534 | 220-225 | NN | denotes | start |
| T12535 | 230-233 | VBD | denotes | was |
| T12536 | 242-244 | IN | denotes | in |
| T12537 | 245-248 | DT | denotes | the |
| T12538 | 259-266 | NNS | denotes | vectors |
| T12539 | 249-258 | NN | denotes | targeting |
| T12540 | 266-267 | : | denotes | ; |
| T12541 | 268-275 | NNS | denotes | details |
| T12542 | 276-285 | JJ | denotes | available |
| T12543 | 286-290 | IN | denotes | upon |
| T12544 | 291-298 | NN | denotes | request |
| T12545 | 298-299 | -RRB- | denotes | ) |
| T12546 | 299-300 | . | denotes | . |
| R5377 | T12473 | T12474 | prep | For,integrated |
| R5378 | T12475 | T12476 | det | the,generation |
| R5379 | T12476 | T12473 | pobj | generation,For |
| R5380 | T12477 | T12476 | prep | of,generation |
| R5381 | T12478 | T12479 | nmod | TaumGFP,mice |
| R5382 | T12479 | T12477 | pobj | mice,of |
| R5383 | T12480 | T12478 | cc | and,TaumGFP |
| R5384 | T12481 | T12482 | compound | TauEWS,Pea3 |
| R5385 | T12482 | T12478 | conj | Pea3,TaumGFP |
| R5386 | T12483 | T12482 | punct | -,Pea3 |
| R5387 | T12484 | T12474 | punct | ", ",integrated |
| R5388 | T12485 | T12486 | nmod | lox,pA |
| R5389 | T12486 | T12500 | nmod | pA,cassettes |
| R5390 | T12487 | T12486 | punct | -,pA |
| R5391 | T12488 | T12486 | nmod | STOP,pA |
| R5392 | T12489 | T12486 | punct | -,pA |
| R5393 | T12490 | T12486 | nmod | lox,pA |
| R5394 | T12491 | T12486 | punct | -,pA |
| R5395 | T12492 | T12486 | nmod | mGFP,pA |
| R5396 | T12493 | T12486 | punct | -,pA |
| R5397 | T12494 | T12486 | nmod | IRES,pA |
| R5398 | T12495 | T12486 | punct | -,pA |
| R5399 | T12496 | T12486 | nmod | NLS,pA |
| R5400 | T12497 | T12486 | punct | -,pA |
| R5401 | T12498 | T12486 | nmod | LacZ,pA |
| R5402 | T12499 | T12486 | punct | -,pA |
| R5403 | T12500 | T12474 | nsubjpass | cassettes,integrated |
| R5404 | T12501 | T12486 | cc | and,pA |
| R5405 | T12502 | T12503 | compound | lox,pA |
| R5406 | T12503 | T12486 | conj | pA,pA |
| R5407 | T12504 | T12503 | punct | -,pA |
| R5408 | T12505 | T12503 | compound | STOP,pA |
| R5409 | T12506 | T12503 | punct | -,pA |
| R5410 | T12507 | T12503 | compound | lox,pA |
| R5411 | T12508 | T12503 | punct | -,pA |
| R5412 | T12509 | T12503 | compound | EWS,pA |
| R5413 | T12510 | T12503 | punct | -,pA |
| R5414 | T12511 | T12503 | compound | Pea3,pA |
| R5415 | T12512 | T12503 | punct | -,pA |
| R5416 | T12513 | T12503 | compound | IRES,pA |
| R5417 | T12514 | T12503 | punct | -,pA |
| R5418 | T12515 | T12503 | compound | NLS,pA |
| R5419 | T12516 | T12503 | punct | -,pA |
| R5420 | T12517 | T12503 | compound | LacZ,pA |
| R5421 | T12518 | T12503 | punct | -,pA |
| R5422 | T12519 | T12500 | compound | targeting,cassettes |
| R5423 | T12520 | T12474 | auxpass | were,integrated |
| R5424 | T12521 | T12474 | prep | into,integrated |
| R5425 | T12522 | T12521 | pobj | exon,into |
| R5426 | T12523 | T12522 | nummod | 2,exon |
| R5427 | T12524 | T12522 | prep | of,exon |
| R5428 | T12525 | T12526 | det | the,locus |
| R5429 | T12526 | T12524 | pobj | locus,of |
| R5430 | T12527 | T12526 | nmod | Tau,locus |
| R5431 | T12528 | T12526 | amod | genomic,locus |
| R5432 | T12529 | T12530 | punct | (,removed |
| R5433 | T12530 | T12474 | parataxis | removed,integrated |
| R5434 | T12531 | T12532 | det | the,ATG |
| R5435 | T12532 | T12530 | nsubjpass | ATG,removed |
| R5436 | T12533 | T12532 | amod | endogenous,ATG |
| R5437 | T12534 | T12532 | compound | start,ATG |
| R5438 | T12535 | T12530 | auxpass | was,removed |
| R5439 | T12536 | T12530 | prep | in,removed |
| R5440 | T12537 | T12538 | det | the,vectors |
| R5441 | T12538 | T12536 | pobj | vectors,in |
| R5442 | T12539 | T12538 | compound | targeting,vectors |
| R5443 | T12540 | T12530 | punct | ;,removed |
| R5444 | T12541 | T12542 | nsubj | details,available |
| R5445 | T12542 | T12530 | amod | available,removed |
| R5446 | T12543 | T12542 | prep | upon,available |
| R5447 | T12544 | T12543 | pobj | request,upon |
| R5448 | T12545 | T12530 | punct | ),removed |
| R5449 | T12546 | T12474 | punct | .,integrated |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12266 | 23-26 | PR_EXT:000010173 | denotes | Tau |
| T12267 | 35-38 | PR_EXT:000010173 | denotes | Tau |
| T12268 | 38-41 | PR_EXT:000007243 | denotes | EWS |
| T12269 | 42-46 | PR_EXT:000007227 | denotes | Pea3 |
| T12270 | 47-51 | NCBITaxon:10088 | denotes | mice |
| T12271 | 53-56 | SO_EXT:0000346 | denotes | lox |
| T12272 | 62-65 | SO_EXT:0000346 | denotes | lox |
| T12273 | 71-75 | SO_EXT:0000243 | denotes | IRES |
| T12274 | 76-79 | SO_EXT:0001528 | denotes | NLS |
| T12275 | 80-84 | PR_EXT:000033987 | denotes | LacZ |
| T12276 | 92-95 | SO_EXT:0000346 | denotes | lox |
| T12277 | 101-104 | SO_EXT:0000346 | denotes | lox |
| T12278 | 105-108 | PR_EXT:000007243 | denotes | EWS |
| T12279 | 109-113 | PR_EXT:000007227 | denotes | Pea3 |
| T12280 | 114-118 | SO_EXT:0000243 | denotes | IRES |
| T12281 | 119-122 | SO_EXT:0001528 | denotes | NLS |
| T12282 | 123-127 | PR_EXT:000033987 | denotes | LacZ |
| T12283 | 141-150 | SO_EXT:0005853 | denotes | cassettes |
| T12284 | 172-176 | SO_EXT:0000147 | denotes | exon |
| T12285 | 186-189 | PR_EXT:000010173 | denotes | Tau |
| T12286 | 190-197 | SO_EXT:0001026 | denotes | genomic |
| T12287 | 220-229 | SO_EXT:0000318 | denotes | start ATG |
| T12288 | 249-266 | SO_EXT:0001644 | denotes | targeting vectors |
biosemtest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11857 | 228-233 | UMLS/C1272689 | denotes | G was |
| T11865 | 180-184 | UMLS/C0015295 | denotes | f th |
| T11884 | 194-197 | UMLS/C1720655 | denotes | mic |
| T11895 | 276-283 | UMLS/C1561567 | denotes | availab |
| T11903 | 206-211 | UMLS/C1708726 | denotes | he en |
| T11907 | 194-197 | UMLS/C1947974 | denotes | mic |
| T11912 | 149-158 | UMLS/C1706210 | denotes | s were in |
| T11921 | 267-274 | UMLS/C1705099 | denotes | detail |
| T11939 | 284-293 | UMLS/C0470187 | denotes | e upon re |
| T11948 | 267-274 | UMLS/C0442335 | denotes | detail |
| T11972 | 198-205 | UMLS/C0017428 | denotes | locus ( |
| T11980 | 17-27 | UMLS/C0079411 | denotes | on of Taum |
| T11990 | 228-233 | UMLS/C0452588 | denotes | G was |
| T12035 | 276-283 | UMLS/C1522508 | denotes | availab |
| T12038 | 149-158 | UMLS/C0450240 | denotes | s were in |
| T12043 | 228-233 | UMLS/C1552850 | denotes | G was |
| T12047 | 228-233 | UMLS/C0439659 | denotes | G was |
| T12053 | 194-197 | UMLS/C2700455 | denotes | mic |
| T12060 | 242-249 | UMLS/C0849355 | denotes | in the |
| T12079 | 217-227 | UMLS/C0205227 | denotes | us start A |
| T12082 | 149-158 | UMLS/C2347567 | denotes | s were in |
| T12086 | 139-148 | UMLS/C1521840 | denotes | g cassett |
| T12087 | 257-266 | UMLS/C1521840 | denotes | g vectors |
| T12090 | 234-237 | UMLS/C0003442 | denotes | rem |
| T12094 | 267-274 | UMLS/C0086022 | denotes | detail |
| T12099 | 139-148 | UMLS/C0599894 | denotes | g cassett |
| T12100 | 257-266 | UMLS/C0599894 | denotes | g vectors |
| T12120 | 194-197 | UMLS/C1446659 | denotes | mic |
| T12124 | 234-237 | UMLS/C0003354 | denotes | rem |
craft-ca-core-dev
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T12171 | 23-26 | PR:000010173 | denotes | Tau |
| T12172 | 35-38 | PR:000010173 | denotes | Tau |
| T12173 | 38-41 | PR:000007243 | denotes | EWS |
| T12174 | 42-46 | PR:000007227 | denotes | Pea3 |
| T12175 | 47-51 | NCBITaxon:10088 | denotes | mice |
| T12176 | 53-56 | SO:0000346 | denotes | lox |
| T12177 | 62-65 | SO:0000346 | denotes | lox |
| T12178 | 71-75 | SO:0000243 | denotes | IRES |
| T12179 | 76-79 | SO:0001528 | denotes | NLS |
| T12180 | 80-84 | PR:000033987 | denotes | LacZ |
| T12181 | 92-95 | SO:0000346 | denotes | lox |
| T12182 | 101-104 | SO:0000346 | denotes | lox |
| T12183 | 105-108 | PR:000007243 | denotes | EWS |
| T12184 | 109-113 | PR:000007227 | denotes | Pea3 |
| T12185 | 114-118 | SO:0000243 | denotes | IRES |
| T12186 | 119-122 | SO:0001528 | denotes | NLS |
| T12187 | 123-127 | PR:000033987 | denotes | LacZ |
| T12188 | 141-150 | SO:0005853 | denotes | cassettes |
| T12189 | 172-176 | SO:0000147 | denotes | exon |
| T12190 | 186-189 | PR:000010173 | denotes | Tau |
| T12191 | 190-197 | SO:0001026 | denotes | genomic |
| T12192 | 220-229 | SO:0000318 | denotes | start ATG |
| T12193 | 249-266 | SO:0001644 | denotes | targeting vectors |