PMC:1084331 / 36512-36916
Annnotations
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11396 | 0-404 | sentence | denotes | Mechanisms such as chromosomal remodeling that restrict or expand access to certain target genes [34] or activation by cofactors responsible for changing the action of particular transcription factors [35] could represent possible mechanisms by which the downstream transcriptional profile of a transcription factor could be temporally shifted towards the selection and control of distinct target genes. |
| T11397 | 1-11 | NNS | denotes | Mechanisms |
| T11398 | 213-222 | VB | denotes | represent |
| T11399 | 12-16 | JJ | denotes | such |
| T11400 | 17-19 | IN | denotes | as |
| T11401 | 20-31 | JJ | denotes | chromosomal |
| T11402 | 32-42 | NN | denotes | remodeling |
| T11403 | 43-47 | WDT | denotes | that |
| T11404 | 48-56 | VB | denotes | restrict |
| T11405 | 57-59 | CC | denotes | or |
| T11406 | 60-66 | VB | denotes | expand |
| T11407 | 67-73 | NN | denotes | access |
| T11408 | 74-76 | IN | denotes | to |
| T11409 | 77-84 | JJ | denotes | certain |
| T11410 | 92-97 | NNS | denotes | genes |
| T11411 | 85-91 | NN | denotes | target |
| T11412 | 98-99 | -LRB- | denotes | [ |
| T11413 | 99-101 | CD | denotes | 34 |
| T11414 | 101-102 | -RRB- | denotes | ] |
| T11415 | 103-105 | CC | denotes | or |
| T11416 | 106-116 | NN | denotes | activation |
| T11417 | 117-119 | IN | denotes | by |
| T11418 | 120-129 | NNS | denotes | cofactors |
| T11419 | 130-141 | JJ | denotes | responsible |
| T11420 | 142-145 | IN | denotes | for |
| T11421 | 146-154 | VBG | denotes | changing |
| T11422 | 155-158 | DT | denotes | the |
| T11423 | 159-165 | NN | denotes | action |
| T11424 | 166-168 | IN | denotes | of |
| T11425 | 169-179 | JJ | denotes | particular |
| T11426 | 194-201 | NNS | denotes | factors |
| T11427 | 180-193 | NN | denotes | transcription |
| T11428 | 202-203 | -LRB- | denotes | [ |
| T11429 | 203-205 | CD | denotes | 35 |
| T11430 | 205-206 | -RRB- | denotes | ] |
| T11431 | 207-212 | MD | denotes | could |
| T11432 | 223-231 | JJ | denotes | possible |
| T11433 | 232-242 | NNS | denotes | mechanisms |
| T11434 | 243-245 | IN | denotes | by |
| T11435 | 337-344 | VBN | denotes | shifted |
| T11436 | 246-251 | WDT | denotes | which |
| T11437 | 252-255 | DT | denotes | the |
| T11438 | 283-290 | NN | denotes | profile |
| T11439 | 256-266 | JJ | denotes | downstream |
| T11440 | 267-282 | JJ | denotes | transcriptional |
| T11441 | 291-293 | IN | denotes | of |
| T11442 | 294-295 | DT | denotes | a |
| T11443 | 310-316 | NN | denotes | factor |
| T11444 | 296-309 | NN | denotes | transcription |
| T11445 | 317-322 | MD | denotes | could |
| T11446 | 323-325 | VB | denotes | be |
| T11447 | 326-336 | RB | denotes | temporally |
| T11448 | 345-352 | IN | denotes | towards |
| T11449 | 353-356 | DT | denotes | the |
| T11450 | 357-366 | NN | denotes | selection |
| T11451 | 367-370 | CC | denotes | and |
| T11452 | 371-378 | NN | denotes | control |
| T11453 | 379-381 | IN | denotes | of |
| T11454 | 382-390 | JJ | denotes | distinct |
| T11455 | 398-403 | NNS | denotes | genes |
| T11456 | 391-397 | NN | denotes | target |
| T11457 | 403-404 | . | denotes | . |
| R4872 | T11397 | T11398 | nsubj | Mechanisms,represent |
| R4873 | T11399 | T11400 | amod | such,as |
| R4874 | T11400 | T11397 | prep | as,Mechanisms |
| R4875 | T11401 | T11402 | amod | chromosomal,remodeling |
| R4876 | T11402 | T11400 | pobj | remodeling,as |
| R4877 | T11403 | T11404 | dep | that,restrict |
| R4878 | T11404 | T11397 | relcl | restrict,Mechanisms |
| R4879 | T11405 | T11404 | cc | or,restrict |
| R4880 | T11406 | T11404 | conj | expand,restrict |
| R4881 | T11407 | T11406 | dobj | access,expand |
| R4882 | T11408 | T11407 | prep | to,access |
| R4883 | T11409 | T11410 | amod | certain,genes |
| R4884 | T11410 | T11408 | pobj | genes,to |
| R4885 | T11411 | T11410 | compound | target,genes |
| R4886 | T11412 | T11413 | punct | [,34 |
| R4887 | T11413 | T11407 | parataxis | 34,access |
| R4888 | T11414 | T11413 | punct | ],34 |
| R4889 | T11415 | T11407 | cc | or,access |
| R4890 | T11416 | T11407 | conj | activation,access |
| R4891 | T11417 | T11416 | prep | by,activation |
| R4892 | T11418 | T11417 | pobj | cofactors,by |
| R4893 | T11419 | T11418 | amod | responsible,cofactors |
| R4894 | T11420 | T11419 | prep | for,responsible |
| R4895 | T11421 | T11420 | pcomp | changing,for |
| R4896 | T11422 | T11423 | det | the,action |
| R4897 | T11423 | T11421 | dobj | action,changing |
| R4898 | T11424 | T11423 | prep | of,action |
| R4899 | T11425 | T11426 | amod | particular,factors |
| R4900 | T11426 | T11424 | pobj | factors,of |
| R4901 | T11427 | T11426 | compound | transcription,factors |
| R4902 | T11428 | T11429 | punct | [,35 |
| R4903 | T11429 | T11406 | parataxis | 35,expand |
| R4904 | T11430 | T11429 | punct | ],35 |
| R4905 | T11431 | T11398 | aux | could,represent |
| R4906 | T11432 | T11433 | amod | possible,mechanisms |
| R4907 | T11433 | T11398 | dobj | mechanisms,represent |
| R4908 | T11434 | T11435 | prep | by,shifted |
| R4909 | T11435 | T11398 | ccomp | shifted,represent |
| R4910 | T11436 | T11434 | pobj | which,by |
| R4911 | T11437 | T11438 | det | the,profile |
| R4912 | T11438 | T11435 | nsubjpass | profile,shifted |
| R4913 | T11439 | T11438 | amod | downstream,profile |
| R4914 | T11440 | T11438 | amod | transcriptional,profile |
| R4915 | T11441 | T11438 | prep | of,profile |
| R4916 | T11442 | T11443 | det | a,factor |
| R4917 | T11443 | T11441 | pobj | factor,of |
| R4918 | T11444 | T11443 | compound | transcription,factor |
| R4919 | T11445 | T11435 | aux | could,shifted |
| R4920 | T11446 | T11435 | auxpass | be,shifted |
| R4921 | T11447 | T11435 | advmod | temporally,shifted |
| R4922 | T11448 | T11435 | prep | towards,shifted |
| R4923 | T11449 | T11450 | det | the,selection |
| R4924 | T11450 | T11448 | pobj | selection,towards |
| R4925 | T11451 | T11450 | cc | and,selection |
| R4926 | T11452 | T11450 | conj | control,selection |
| R4927 | T11453 | T11450 | prep | of,selection |
| R4928 | T11454 | T11455 | amod | distinct,genes |
| R4929 | T11455 | T11453 | pobj | genes,of |
| R4930 | T11456 | T11455 | compound | target,genes |
| R4931 | T11457 | T11398 | punct | .,represent |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10681 | 20-31 | GO_SO_EXT:chromosome | denotes | chromosomal |
| T10682 | 92-97 | SO_EXT:0000704 | denotes | genes |
| T10683 | 120-129 | CHEBI_EXT:23357 | denotes | cofactors |
| T10684 | 180-193 | GO_EXT:transcription | denotes | transcription |
| T10685 | 180-201 | GO_EXT:transcription_factor | denotes | transcription factors |
| T10686 | 267-282 | GO_EXT:transcription | denotes | transcriptional |
| T10687 | 296-309 | GO_EXT:transcription | denotes | transcription |
| T10688 | 296-316 | GO_EXT:transcription_factor | denotes | transcription factor |
| T10689 | 371-378 | GO:0065007 | denotes | control |
| T10690 | 398-403 | SO_EXT:0000704 | denotes | genes |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 15836427-11893494-84719656 | 99-101 | 11893494 | denotes | 34 |
| 15836427-11948622-84719657 | 203-205 | 11948622 | denotes | 35 |
| T60371 | 99-101 | 11893494 | denotes | 34 |
| T57110 | 203-205 | 11948622 | denotes | 35 |
biosemtest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9572 | 74-76 | UMLS/C0319022 | denotes | to |
| T9594 | 159-165 | UMLS/C1552007 | denotes | action |
| T9659 | 120-129 | UMLS/C0178555 | denotes | cofactors |
| T9678 | 106-116 | UMLS/C1879547 | denotes | activation |
| T9714 | 67-73 | UMLS/C1554204 | denotes | access |
| T9751 | 77-84 | UMLS/C0205423 | denotes | certain |
| T9754 | 1-11 | UMLS/C0441712 | denotes | Mechanisms |
| T9755 | 232-242 | UMLS/C0441712 | denotes | mechanisms |
| T9770 | 207-212 | UMLS/C0006823 | denotes | could |
| T9771 | 317-322 | UMLS/C0006823 | denotes | could |
| T9787 | 48-56 | UMLS/C1549594 | denotes | restrict |
| T9792 | 85-97 | UMLS/C1332838 | denotes | target genes |
| T9793 | 391-403 | UMLS/C1332838 | denotes | target genes |
| T9801 | 223-231 | UMLS/C2362652 | denotes | possible |
| T9812 | 20-31 | UMLS/C0008633 | denotes | chromosomal |
| T9829 | 60-66 | UMLS/C0205229 | denotes | expand |
| T9873 | 223-231 | UMLS/C1705910 | denotes | possible |
| T9883 | 371-378 | UMLS/C0332298 | denotes | control |
| T9892 | 77-84 | UMLS/C1704787 | denotes | certain |
| T9896 | 146-154 | UMLS/C0025320 | denotes | changing |
| T9928 | 357-366 | UMLS/C0036576 | denotes | selection |
| T9933 | 371-378 | UMLS/C1882979 | denotes | control |
| T9947 | 256-266 | UMLS/C0522506 | denotes | downstream |
| T10012 | 146-154 | UMLS/C0392747 | denotes | changing |
| T10016 | 223-231 | UMLS/C0332149 | denotes | possible |
| T10041 | 159-165 | UMLS/C0441472 | denotes | action |
| T10059 | 180-201 | UMLS/C0040648 | denotes | transcription factors |
| T10060 | 296-316 | UMLS/C0040648 | denotes | transcription factor |
| T10078 | 267-282 | UMLS/C0040649 | denotes | transcriptional |
| T10103 | 371-378 | UMLS/C0009932 | denotes | control |
| T10130 | 48-56 | UMLS/C1548390 | denotes | restrict |
| T10131 | 283-290 | UMLS/C1979963 | denotes | profile |
| T10132 | 130-141 | UMLS/C1273518 | denotes | responsible |
| T10159 | 48-56 | UMLS/C1610594 | denotes | restrict |
| T10190 | 146-154 | UMLS/C1705241 | denotes | changing |
| T10193 | 337-344 | UMLS/C0333051 | denotes | shifted |
| T10206 | 371-378 | UMLS/C1550141 | denotes | control |
| T10217 | 67-73 | UMLS/C0444454 | denotes | access |
| T10221 | 146-154 | UMLS/C0443172 | denotes | changing |
| T10225 | 1-11 | UMLS/C1706376 | denotes | Mechanisms |
| T10226 | 232-242 | UMLS/C1706376 | denotes | mechanisms |
| T10256 | 371-378 | UMLS/C1547100 | denotes | control |
| T10262 | 120-129 | UMLS/C1541159 | denotes | cofactors |
| T10290 | 207-212 | UMLS/C0344312 | denotes | could |
| T10291 | 317-322 | UMLS/C0344312 | denotes | could |
| T10301 | 371-378 | UMLS/C0243148 | denotes | control |
| T10343 | 48-56 | UMLS/C0443288 | denotes | restrict |
| T10402 | 337-344 | UMLS/C2347509 | denotes | shifted |
| T10418 | 371-378 | UMLS/C2587213 | denotes | control |
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10515 | 92-97 | SO:0000704 | denotes | genes |
| T10516 | 120-129 | CHEBI:23357 | denotes | cofactors |
| T10517 | 371-378 | GO:0065007 | denotes | control |
| T10518 | 398-403 | SO:0000704 | denotes | genes |