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PMC:1084331 / 35953-37744 JSONTXT

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Id Subject Object Predicate Lexical cue
T11307 0-3 PRP$ denotes Our
T11308 4-12 NNS denotes findings
T11309 13-16 VBP denotes are
T11310 17-27 JJ denotes compatible
T11311 28-32 IN denotes with
T11312 33-34 DT denotes a
T11313 35-40 NN denotes model
T11314 41-43 IN denotes in
T11315 62-69 VBP denotes acquire
T11316 44-49 WDT denotes which
T11317 50-53 NN denotes DRG
T11318 54-61 NNS denotes neurons
T11319 70-75 PRP$ denotes their
T11320 83-87 NN denotes fate
T11321 76-82 JJ denotes mature
T11322 88-90 IN denotes by
T11323 91-101 JJ denotes sequential
T11324 128-136 NN denotes addition
T11325 102-105 CC denotes and
T11326 106-116 RB denotes temporally
T11327 117-127 VBN denotes controlled
T11328 137-139 IN denotes of
T11329 140-147 NN denotes lineage
T11330 148-156 JJ denotes specific
T11331 147-148 HYPH denotes -
T11332 157-165 NNS denotes features
T11333 166-167 -LRB- denotes (
T11334 167-173 NN denotes Figure
T11335 174-175 CD denotes 9
T11336 175-176 -RRB- denotes )
T11337 176-177 . denotes .
T11338 177-353 sentence denotes Target-derived factors act on predetermined neuronal lineages to switch their developmental programs to become compatible with processes such as target invasion and branching.
T11339 178-184 NN denotes Target
T11340 185-192 VBN denotes derived
T11341 184-185 HYPH denotes -
T11342 193-200 NNS denotes factors
T11343 201-204 VBP denotes act
T11344 205-207 IN denotes on
T11345 208-221 VBN denotes predetermined
T11346 231-239 NNS denotes lineages
T11347 222-230 JJ denotes neuronal
T11348 240-242 TO denotes to
T11349 243-249 VB denotes switch
T11350 250-255 PRP$ denotes their
T11351 270-278 NNS denotes programs
T11352 256-269 JJ denotes developmental
T11353 279-281 TO denotes to
T11354 282-288 VB denotes become
T11355 289-299 JJ denotes compatible
T11356 300-304 IN denotes with
T11357 305-314 NNS denotes processes
T11358 315-319 JJ denotes such
T11359 320-322 IN denotes as
T11360 323-329 NN denotes target
T11361 330-338 NN denotes invasion
T11362 339-342 CC denotes and
T11363 343-352 NN denotes branching
T11364 352-353 . denotes .
T11365 353-559 sentence denotes Such a transition state in the acquisition of a defined neuronal fate would be accompanied by the induction of appropriate transcriptional programs through the expression of specific transcription factors.
T11366 354-358 PDT denotes Such
T11367 372-377 NN denotes state
T11368 359-360 DT denotes a
T11369 361-371 NN denotes transition
T11370 433-444 VBN denotes accompanied
T11371 378-380 IN denotes in
T11372 381-384 DT denotes the
T11373 385-396 NN denotes acquisition
T11374 397-399 IN denotes of
T11375 400-401 DT denotes a
T11376 419-423 NN denotes fate
T11377 402-409 VBN denotes defined
T11378 410-418 JJ denotes neuronal
T11379 424-429 MD denotes would
T11380 430-432 VB denotes be
T11381 445-447 IN denotes by
T11382 448-451 DT denotes the
T11383 452-461 NN denotes induction
T11384 462-464 IN denotes of
T11385 465-476 JJ denotes appropriate
T11386 493-501 NNS denotes programs
T11387 477-492 JJ denotes transcriptional
T11388 502-509 IN denotes through
T11389 510-513 DT denotes the
T11390 514-524 NN denotes expression
T11391 525-527 IN denotes of
T11392 528-536 JJ denotes specific
T11393 551-558 NNS denotes factors
T11394 537-550 NN denotes transcription
T11395 558-559 . denotes .
T11396 559-963 sentence denotes Mechanisms such as chromosomal remodeling that restrict or expand access to certain target genes [34] or activation by cofactors responsible for changing the action of particular transcription factors [35] could represent possible mechanisms by which the downstream transcriptional profile of a transcription factor could be temporally shifted towards the selection and control of distinct target genes.
T11397 560-570 NNS denotes Mechanisms
T11398 772-781 VB denotes represent
T11399 571-575 JJ denotes such
T11400 576-578 IN denotes as
T11401 579-590 JJ denotes chromosomal
T11402 591-601 NN denotes remodeling
T11403 602-606 WDT denotes that
T11404 607-615 VB denotes restrict
T11405 616-618 CC denotes or
T11406 619-625 VB denotes expand
T11407 626-632 NN denotes access
T11408 633-635 IN denotes to
T11409 636-643 JJ denotes certain
T11410 651-656 NNS denotes genes
T11411 644-650 NN denotes target
T11412 657-658 -LRB- denotes [
T11413 658-660 CD denotes 34
T11414 660-661 -RRB- denotes ]
T11415 662-664 CC denotes or
T11416 665-675 NN denotes activation
T11417 676-678 IN denotes by
T11418 679-688 NNS denotes cofactors
T11419 689-700 JJ denotes responsible
T11420 701-704 IN denotes for
T11421 705-713 VBG denotes changing
T11422 714-717 DT denotes the
T11423 718-724 NN denotes action
T11424 725-727 IN denotes of
T11425 728-738 JJ denotes particular
T11426 753-760 NNS denotes factors
T11427 739-752 NN denotes transcription
T11428 761-762 -LRB- denotes [
T11429 762-764 CD denotes 35
T11430 764-765 -RRB- denotes ]
T11431 766-771 MD denotes could
T11432 782-790 JJ denotes possible
T11433 791-801 NNS denotes mechanisms
T11434 802-804 IN denotes by
T11435 896-903 VBN denotes shifted
T11436 805-810 WDT denotes which
T11437 811-814 DT denotes the
T11438 842-849 NN denotes profile
T11439 815-825 JJ denotes downstream
T11440 826-841 JJ denotes transcriptional
T11441 850-852 IN denotes of
T11442 853-854 DT denotes a
T11443 869-875 NN denotes factor
T11444 855-868 NN denotes transcription
T11445 876-881 MD denotes could
T11446 882-884 VB denotes be
T11447 885-895 RB denotes temporally
T11448 904-911 IN denotes towards
T11449 912-915 DT denotes the
T11450 916-925 NN denotes selection
T11451 926-929 CC denotes and
T11452 930-937 NN denotes control
T11453 938-940 IN denotes of
T11454 941-949 JJ denotes distinct
T11455 957-962 NNS denotes genes
T11456 950-956 NN denotes target
T11457 962-963 . denotes .
T11458 963-1147 sentence denotes Interestingly, several ETS transcription factors are activated through release of autoinhibition via interaction with cofactors and/or via post-translational modifications [35,36,37].
T11459 964-977 RB denotes Interestingly
T11460 1017-1026 VBN denotes activated
T11461 977-979 , denotes ,
T11462 979-986 JJ denotes several
T11463 1005-1012 NNS denotes factors
T11464 987-990 NN denotes ETS
T11465 991-1004 NN denotes transcription
T11466 1013-1016 VBP denotes are
T11467 1027-1034 IN denotes through
T11468 1035-1042 NN denotes release
T11469 1043-1045 IN denotes of
T11470 1046-1060 NN denotes autoinhibition
T11471 1061-1064 IN denotes via
T11472 1065-1076 NN denotes interaction
T11473 1077-1081 IN denotes with
T11474 1082-1091 NNS denotes cofactors
T11475 1092-1095 CC denotes and
T11476 1095-1096 HYPH denotes /
T11477 1096-1098 CC denotes or
T11478 1099-1102 IN denotes via
T11479 1103-1121 JJ denotes post-translational
T11480 1122-1135 NNS denotes modifications
T11481 1136-1137 -LRB- denotes [
T11482 1143-1145 CD denotes 37
T11483 1137-1139 CD denotes 35
T11484 1139-1140 , denotes ,
T11485 1140-1142 CD denotes 36
T11486 1142-1143 , denotes ,
T11487 1145-1146 -RRB- denotes ]
T11488 1146-1147 . denotes .
T11489 1147-1392 sentence denotes The fusion of EWS with Pea3 could circumvent a need for activation through specific cofactors while still maintaining ETS site dependence, thus rendering EWS-Pea3 less sensitive to the cellular context than endogenous ETS transcription factors.
T11490 1148-1151 DT denotes The
T11491 1152-1158 NN denotes fusion
T11492 1182-1192 VB denotes circumvent
T11493 1159-1161 IN denotes of
T11494 1162-1165 NN denotes EWS
T11495 1166-1170 IN denotes with
T11496 1171-1175 NN denotes Pea3
T11497 1176-1181 MD denotes could
T11498 1193-1194 DT denotes a
T11499 1195-1199 NN denotes need
T11500 1200-1203 IN denotes for
T11501 1204-1214 NN denotes activation
T11502 1215-1222 IN denotes through
T11503 1223-1231 JJ denotes specific
T11504 1232-1241 NNS denotes cofactors
T11505 1242-1247 IN denotes while
T11506 1254-1265 VBG denotes maintaining
T11507 1248-1253 RB denotes still
T11508 1266-1269 NN denotes ETS
T11509 1275-1285 NN denotes dependence
T11510 1270-1274 NN denotes site
T11511 1285-1287 , denotes ,
T11512 1287-1291 RB denotes thus
T11513 1292-1301 VBG denotes rendering
T11514 1302-1305 NN denotes EWS
T11515 1306-1310 NN denotes Pea3
T11516 1305-1306 HYPH denotes -
T11517 1311-1315 RBR denotes less
T11518 1316-1325 JJ denotes sensitive
T11519 1326-1328 IN denotes to
T11520 1329-1332 DT denotes the
T11521 1342-1349 NN denotes context
T11522 1333-1341 JJ denotes cellular
T11523 1350-1354 IN denotes than
T11524 1355-1365 JJ denotes endogenous
T11525 1384-1391 NNS denotes factors
T11526 1366-1369 NN denotes ETS
T11527 1370-1383 NN denotes transcription
T11528 1391-1392 . denotes .
T11529 1392-1582 sentence denotes Using this fusion protein, our experiments demonstrate a profound change in the action of ETS signaling at the level of transcriptional regulation within post-mitotic DRG neurons over time.
T11530 1393-1398 VBG denotes Using
T11531 1436-1447 VBP denotes demonstrate
T11532 1399-1403 DT denotes this
T11533 1411-1418 NN denotes protein
T11534 1404-1410 NN denotes fusion
T11535 1418-1420 , denotes ,
T11536 1420-1423 PRP$ denotes our
T11537 1424-1435 NNS denotes experiments
T11538 1448-1449 DT denotes a
T11539 1459-1465 NN denotes change
T11540 1450-1458 JJ denotes profound
T11541 1466-1468 IN denotes in
T11542 1469-1472 DT denotes the
T11543 1473-1479 NN denotes action
T11544 1480-1482 IN denotes of
T11545 1483-1486 NN denotes ETS
T11546 1487-1496 NN denotes signaling
T11547 1497-1499 IN denotes at
T11548 1500-1503 DT denotes the
T11549 1504-1509 NN denotes level
T11550 1510-1512 IN denotes of
T11551 1513-1528 JJ denotes transcriptional
T11552 1529-1539 NN denotes regulation
T11553 1540-1546 IN denotes within
T11554 1547-1559 JJ denotes post-mitotic
T11555 1564-1571 NNS denotes neurons
T11556 1560-1563 NN denotes DRG
T11557 1572-1576 IN denotes over
T11558 1577-1581 NN denotes time
T11559 1581-1582 . denotes .
T11560 1582-1791 sentence denotes Moreover, the observed transcriptional shift in ETS signaling is paired with the onset of appropriate regulation of neuronal subtype specification and establishment of axonal projections into the target area.
T11561 1583-1591 RB denotes Moreover
T11562 1648-1654 VBN denotes paired
T11563 1591-1593 , denotes ,
T11564 1593-1596 DT denotes the
T11565 1622-1627 NN denotes shift
T11566 1597-1605 VBN denotes observed
T11567 1606-1621 JJ denotes transcriptional
T11568 1628-1630 IN denotes in
T11569 1631-1634 NN denotes ETS
T11570 1635-1644 NN denotes signaling
T11571 1645-1647 VBZ denotes is
T11572 1655-1659 IN denotes with
T11573 1660-1663 DT denotes the
T11574 1664-1669 NN denotes onset
T11575 1670-1672 IN denotes of
T11576 1673-1684 JJ denotes appropriate
T11577 1685-1695 NN denotes regulation
T11578 1696-1698 IN denotes of
T11579 1699-1707 JJ denotes neuronal
T11580 1716-1729 NN denotes specification
T11581 1708-1715 NN denotes subtype
T11582 1730-1733 CC denotes and
T11583 1734-1747 NN denotes establishment
T11584 1748-1750 IN denotes of
T11585 1751-1757 JJ denotes axonal
T11586 1758-1769 NNS denotes projections
T11587 1770-1774 IN denotes into
T11588 1775-1778 DT denotes the
T11589 1786-1790 NN denotes area
T11590 1779-1785 NN denotes target
T11591 1790-1791 . denotes .
R4788 T11307 T11308 poss Our,findings
R4789 T11308 T11309 nsubj findings,are
R4790 T11310 T11309 acomp compatible,are
R4791 T11311 T11310 prep with,compatible
R4792 T11312 T11313 det a,model
R4793 T11313 T11311 pobj model,with
R4794 T11314 T11315 prep in,acquire
R4795 T11315 T11313 relcl acquire,model
R4796 T11316 T11314 pobj which,in
R4797 T11317 T11318 compound DRG,neurons
R4798 T11318 T11315 nsubj neurons,acquire
R4799 T11319 T11320 poss their,fate
R4800 T11320 T11315 dobj fate,acquire
R4801 T11321 T11320 amod mature,fate
R4802 T11322 T11315 prep by,acquire
R4803 T11323 T11324 amod sequential,addition
R4804 T11324 T11322 pobj addition,by
R4805 T11325 T11323 cc and,sequential
R4806 T11326 T11327 advmod temporally,controlled
R4807 T11327 T11323 conj controlled,sequential
R4808 T11328 T11324 prep of,addition
R4809 T11329 T11330 npadvmod lineage,specific
R4810 T11330 T11332 amod specific,features
R4811 T11331 T11330 punct -,specific
R4812 T11332 T11328 pobj features,of
R4813 T11333 T11334 punct (,Figure
R4814 T11334 T11315 parataxis Figure,acquire
R4815 T11335 T11334 nummod 9,Figure
R4816 T11336 T11334 punct ),Figure
R4817 T11337 T11309 punct .,are
R4818 T11339 T11340 npadvmod Target,derived
R4819 T11340 T11342 amod derived,factors
R4820 T11341 T11340 punct -,derived
R4821 T11342 T11343 nsubj factors,act
R4822 T11344 T11343 prep on,act
R4823 T11345 T11346 amod predetermined,lineages
R4824 T11346 T11344 pobj lineages,on
R4825 T11347 T11346 amod neuronal,lineages
R4826 T11348 T11349 aux to,switch
R4827 T11349 T11343 advcl switch,act
R4828 T11350 T11351 poss their,programs
R4829 T11351 T11349 dobj programs,switch
R4830 T11352 T11351 amod developmental,programs
R4831 T11353 T11354 aux to,become
R4832 T11354 T11349 advcl become,switch
R4833 T11355 T11354 acomp compatible,become
R4834 T11356 T11355 prep with,compatible
R4835 T11357 T11356 pobj processes,with
R4836 T11358 T11359 amod such,as
R4837 T11359 T11357 prep as,processes
R4838 T11360 T11361 compound target,invasion
R4839 T11361 T11359 pobj invasion,as
R4840 T11362 T11361 cc and,invasion
R4841 T11363 T11361 conj branching,invasion
R4842 T11364 T11343 punct .,act
R4843 T11366 T11367 predet Such,state
R4844 T11367 T11370 nsubjpass state,accompanied
R4845 T11368 T11367 det a,state
R4846 T11369 T11367 compound transition,state
R4847 T11371 T11367 prep in,state
R4848 T11372 T11373 det the,acquisition
R4849 T11373 T11371 pobj acquisition,in
R4850 T11374 T11373 prep of,acquisition
R4851 T11375 T11376 det a,fate
R4852 T11376 T11374 pobj fate,of
R4853 T11377 T11376 amod defined,fate
R4854 T11378 T11376 amod neuronal,fate
R4855 T11379 T11370 aux would,accompanied
R4856 T11380 T11370 auxpass be,accompanied
R4857 T11381 T11370 agent by,accompanied
R4858 T11382 T11383 det the,induction
R4859 T11383 T11381 pobj induction,by
R4860 T11384 T11383 prep of,induction
R4861 T11385 T11386 amod appropriate,programs
R4862 T11386 T11384 pobj programs,of
R4863 T11387 T11386 amod transcriptional,programs
R4864 T11388 T11383 prep through,induction
R4865 T11389 T11390 det the,expression
R4866 T11390 T11388 pobj expression,through
R4867 T11391 T11390 prep of,expression
R4868 T11392 T11393 amod specific,factors
R4869 T11393 T11391 pobj factors,of
R4870 T11394 T11393 compound transcription,factors
R4871 T11395 T11370 punct .,accompanied
R4872 T11397 T11398 nsubj Mechanisms,represent
R4873 T11399 T11400 amod such,as
R4874 T11400 T11397 prep as,Mechanisms
R4875 T11401 T11402 amod chromosomal,remodeling
R4876 T11402 T11400 pobj remodeling,as
R4877 T11403 T11404 dep that,restrict
R4878 T11404 T11397 relcl restrict,Mechanisms
R4879 T11405 T11404 cc or,restrict
R4880 T11406 T11404 conj expand,restrict
R4881 T11407 T11406 dobj access,expand
R4882 T11408 T11407 prep to,access
R4883 T11409 T11410 amod certain,genes
R4884 T11410 T11408 pobj genes,to
R4885 T11411 T11410 compound target,genes
R4886 T11412 T11413 punct [,34
R4887 T11413 T11407 parataxis 34,access
R4888 T11414 T11413 punct ],34
R4889 T11415 T11407 cc or,access
R4890 T11416 T11407 conj activation,access
R4891 T11417 T11416 prep by,activation
R4892 T11418 T11417 pobj cofactors,by
R4893 T11419 T11418 amod responsible,cofactors
R4894 T11420 T11419 prep for,responsible
R4895 T11421 T11420 pcomp changing,for
R4896 T11422 T11423 det the,action
R4897 T11423 T11421 dobj action,changing
R4898 T11424 T11423 prep of,action
R4899 T11425 T11426 amod particular,factors
R4900 T11426 T11424 pobj factors,of
R4901 T11427 T11426 compound transcription,factors
R4902 T11428 T11429 punct [,35
R4903 T11429 T11406 parataxis 35,expand
R4904 T11430 T11429 punct ],35
R4905 T11431 T11398 aux could,represent
R4906 T11432 T11433 amod possible,mechanisms
R4907 T11433 T11398 dobj mechanisms,represent
R4908 T11434 T11435 prep by,shifted
R4909 T11435 T11398 ccomp shifted,represent
R4910 T11436 T11434 pobj which,by
R4911 T11437 T11438 det the,profile
R4912 T11438 T11435 nsubjpass profile,shifted
R4913 T11439 T11438 amod downstream,profile
R4914 T11440 T11438 amod transcriptional,profile
R4915 T11441 T11438 prep of,profile
R4916 T11442 T11443 det a,factor
R4917 T11443 T11441 pobj factor,of
R4918 T11444 T11443 compound transcription,factor
R4919 T11445 T11435 aux could,shifted
R4920 T11446 T11435 auxpass be,shifted
R4921 T11447 T11435 advmod temporally,shifted
R4922 T11448 T11435 prep towards,shifted
R4923 T11449 T11450 det the,selection
R4924 T11450 T11448 pobj selection,towards
R4925 T11451 T11450 cc and,selection
R4926 T11452 T11450 conj control,selection
R4927 T11453 T11450 prep of,selection
R4928 T11454 T11455 amod distinct,genes
R4929 T11455 T11453 pobj genes,of
R4930 T11456 T11455 compound target,genes
R4931 T11457 T11398 punct .,represent
R4932 T11459 T11460 advmod Interestingly,activated
R4933 T11461 T11460 punct ", ",activated
R4934 T11462 T11463 amod several,factors
R4935 T11463 T11460 nsubjpass factors,activated
R4936 T11464 T11463 compound ETS,factors
R4937 T11465 T11463 compound transcription,factors
R4938 T11466 T11460 auxpass are,activated
R4939 T11467 T11460 prep through,activated
R4940 T11468 T11467 pobj release,through
R4941 T11469 T11468 prep of,release
R4942 T11470 T11469 pobj autoinhibition,of
R4943 T11471 T11460 prep via,activated
R4944 T11472 T11471 pobj interaction,via
R4945 T11473 T11472 prep with,interaction
R4946 T11474 T11473 pobj cofactors,with
R4947 T11475 T11471 cc and,via
R4948 T11476 T11475 punct /,and
R4949 T11477 T11475 cc or,and
R4950 T11478 T11471 conj via,via
R4951 T11479 T11480 amod post-translational,modifications
R4952 T11480 T11478 pobj modifications,via
R4953 T11481 T11482 punct [,37
R4954 T11482 T11460 parataxis 37,activated
R4955 T11483 T11482 nummod 35,37
R4956 T11484 T11482 punct ",",37
R4957 T11485 T11482 nummod 36,37
R4958 T11486 T11482 punct ",",37
R4959 T11487 T11482 punct ],37
R4960 T11488 T11460 punct .,activated
R4961 T11490 T11491 det The,fusion
R4962 T11491 T11492 nsubj fusion,circumvent
R4963 T11493 T11491 prep of,fusion
R4964 T11494 T11493 pobj EWS,of
R4965 T11495 T11491 prep with,fusion
R4966 T11496 T11495 pobj Pea3,with
R4967 T11497 T11492 aux could,circumvent
R4968 T11498 T11499 det a,need
R4969 T11499 T11492 dobj need,circumvent
R4970 T11500 T11499 prep for,need
R4971 T11501 T11500 pobj activation,for
R4972 T11502 T11492 prep through,circumvent
R4973 T11503 T11504 amod specific,cofactors
R4974 T11504 T11502 pobj cofactors,through
R4975 T11505 T11506 mark while,maintaining
R4976 T11506 T11492 advcl maintaining,circumvent
R4977 T11507 T11506 advmod still,maintaining
R4978 T11508 T11509 compound ETS,dependence
R4979 T11509 T11506 dobj dependence,maintaining
R4980 T11510 T11509 compound site,dependence
R4981 T11511 T11492 punct ", ",circumvent
R4982 T11512 T11513 advmod thus,rendering
R4983 T11513 T11492 advcl rendering,circumvent
R4984 T11514 T11515 compound EWS,Pea3
R4985 T11515 T11513 dobj Pea3,rendering
R4986 T11516 T11515 punct -,Pea3
R4987 T11517 T11518 advmod less,sensitive
R4988 T11518 T11513 oprd sensitive,rendering
R4989 T11519 T11518 prep to,sensitive
R4990 T11520 T11521 det the,context
R4991 T11521 T11519 pobj context,to
R4992 T11522 T11521 amod cellular,context
R4993 T11523 T11518 prep than,sensitive
R4994 T11524 T11525 amod endogenous,factors
R4995 T11525 T11523 pobj factors,than
R4996 T11526 T11525 compound ETS,factors
R4997 T11527 T11525 compound transcription,factors
R4998 T11528 T11492 punct .,circumvent
R4999 T11530 T11531 advcl Using,demonstrate
R5000 T11532 T11533 det this,protein
R5001 T11533 T11530 dobj protein,Using
R5002 T11534 T11533 compound fusion,protein
R5003 T11535 T11531 punct ", ",demonstrate
R5004 T11536 T11537 poss our,experiments
R5005 T11537 T11531 nsubj experiments,demonstrate
R5006 T11538 T11539 det a,change
R5007 T11539 T11531 dobj change,demonstrate
R5008 T11540 T11539 amod profound,change
R5009 T11541 T11539 prep in,change
R5010 T11542 T11543 det the,action
R5011 T11543 T11541 pobj action,in
R5012 T11544 T11543 prep of,action
R5013 T11545 T11546 compound ETS,signaling
R5014 T11546 T11544 pobj signaling,of
R5015 T11547 T11531 prep at,demonstrate
R5016 T11548 T11549 det the,level
R5017 T11549 T11547 pobj level,at
R5018 T11550 T11549 prep of,level
R5019 T11551 T11552 amod transcriptional,regulation
R5020 T11552 T11550 pobj regulation,of
R5021 T11553 T11549 prep within,level
R5022 T11554 T11555 amod post-mitotic,neurons
R5023 T11555 T11553 pobj neurons,within
R5024 T11556 T11555 compound DRG,neurons
R5025 T11557 T11531 prep over,demonstrate
R5026 T11558 T11557 pobj time,over
R5027 T11559 T11531 punct .,demonstrate
R5028 T11561 T11562 advmod Moreover,paired
R5029 T11563 T11562 punct ", ",paired
R5030 T11564 T11565 det the,shift
R5031 T11565 T11562 nsubjpass shift,paired
R5032 T11566 T11565 amod observed,shift
R5033 T11567 T11565 amod transcriptional,shift
R5034 T11568 T11565 prep in,shift
R5035 T11569 T11570 compound ETS,signaling
R5036 T11570 T11568 pobj signaling,in
R5037 T11571 T11562 auxpass is,paired
R5038 T11572 T11562 prep with,paired
R5039 T11573 T11574 det the,onset
R5040 T11574 T11572 pobj onset,with
R5041 T11575 T11574 prep of,onset
R5042 T11576 T11577 amod appropriate,regulation
R5043 T11577 T11575 pobj regulation,of
R5044 T11578 T11577 prep of,regulation
R5045 T11579 T11580 amod neuronal,specification
R5046 T11580 T11578 pobj specification,of
R5047 T11581 T11580 compound subtype,specification
R5048 T11582 T11577 cc and,regulation
R5049 T11583 T11577 conj establishment,regulation
R5050 T11584 T11583 prep of,establishment
R5051 T11585 T11586 amod axonal,projections
R5052 T11586 T11584 pobj projections,of
R5053 T11587 T11586 prep into,projections
R5054 T11588 T11589 det the,area
R5055 T11589 T11587 pobj area,into
R5056 T11590 T11589 compound target,area
R5057 T11591 T11562 punct .,paired

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10672 50-53 UBERON:0000044 denotes DRG
T10673 54-61 CL:0000540 denotes neurons
T10674 117-127 GO:0065007 denotes controlled
T10675 222-230 CL:0000540 denotes neuronal
T10676 410-418 CL:0000540 denotes neuronal
T10677 477-492 GO_EXT:transcription denotes transcriptional
T10678 514-524 GO:0010467 denotes expression
T10679 537-550 GO_EXT:transcription denotes transcription
T10680 537-558 GO_EXT:transcription_factor denotes transcription factors
T10681 579-590 GO_SO_EXT:chromosome denotes chromosomal
T10682 651-656 SO_EXT:0000704 denotes genes
T10683 679-688 CHEBI_EXT:23357 denotes cofactors
T10684 739-752 GO_EXT:transcription denotes transcription
T10685 739-760 GO_EXT:transcription_factor denotes transcription factors
T10686 826-841 GO_EXT:transcription denotes transcriptional
T10687 855-868 GO_EXT:transcription denotes transcription
T10688 855-875 GO_EXT:transcription_factor denotes transcription factor
T10689 930-937 GO:0065007 denotes control
T10690 957-962 SO_EXT:0000704 denotes genes
T10691 991-1004 GO_EXT:transcription denotes transcription
T10692 991-1012 GO_EXT:transcription_factor denotes transcription factors
T10693 1082-1091 CHEBI_EXT:23357 denotes cofactors
T10694 1103-1135 GO_SO_EXT:post_translational_modification_entity_or_process denotes post-translational modifications
T10695 1152-1158 SO_EXT:sequence_fusion_entity_or_process denotes fusion
T10696 1162-1165 PR_EXT:000007243 denotes EWS
T10697 1171-1175 PR_EXT:000007227 denotes Pea3
T10698 1232-1241 CHEBI_EXT:23357 denotes cofactors
T10699 1302-1305 PR_EXT:000007243 denotes EWS
T10700 1306-1310 PR_EXT:000007227 denotes Pea3
T10701 1333-1341 CL_GO_EXT:cell denotes cellular
T10702 1370-1383 GO_EXT:transcription denotes transcription
T10703 1370-1391 GO_EXT:transcription_factor denotes transcription factors
T10704 1404-1410 SO_EXT:sequence_fusion_entity_or_process denotes fusion
T10705 1411-1418 CHEBI_PR_EXT:protein denotes protein
T10706 1487-1496 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling
T10707 1513-1528 GO_EXT:transcription denotes transcriptional
T10708 1529-1539 GO:0065007 denotes regulation
T10709 1552-1559 GO:0007067 denotes mitotic
T10710 1560-1563 UBERON:0000044 denotes DRG
T10711 1564-1571 CL:0000540 denotes neurons
T10712 1606-1621 GO_EXT:transcription denotes transcriptional
T10713 1635-1644 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling
T10714 1685-1695 GO:0065007 denotes regulation
T10715 1699-1707 CL:0000540 denotes neuronal
T10716 1751-1769 GO:0030424 denotes axonal projections

2_test

Id Subject Object Predicate Lexical cue
15836427-11893494-84719656 658-660 11893494 denotes 34
15836427-11948622-84719657 762-764 11948622 denotes 35
15836427-11948622-84719658 1137-1139 11948622 denotes 35
15836427-11278941-84719659 1140-1142 11278941 denotes 36
15836427-12142282-84719660 1143-1145 12142282 denotes 37
T60371 658-660 11893494 denotes 34
T57110 762-764 11948622 denotes 35
T99339 1137-1139 11948622 denotes 35
T9171 1140-1142 11278941 denotes 36
T90948 1143-1145 12142282 denotes 37

biosemtest

Id Subject Object Predicate Lexical cue
T9549 1035-1042 UMLS/C0391871 denotes release
T9550 1270-1274 UMLS/C1515974 denotes site
T9557 35-40 UMLS/C0302143 denotes model
T9570 240-242 UMLS/C0319022 denotes to
T9571 279-281 UMLS/C0319022 denotes to
T9572 633-635 UMLS/C0319022 denotes to
T9584 465-476 UMLS/C1548787 denotes appropriate
T9585 1673-1684 UMLS/C1548787 denotes appropriate
T9586 1035-1042 UMLS/C1283071 denotes release
T9590 50-53 UMLS/C1537672 denotes DRG
T9591 1560-1563 UMLS/C1537672 denotes DRG
T9594 718-724 UMLS/C1552007 denotes action
T9595 1473-1479 UMLS/C1552007 denotes action
T9603 361-371 UMLS/C1705165 denotes transition
T9604 35-40 UMLS/C0335295 denotes model
T9609 343-352 UMLS/C1706131 denotes branching
T9613 343-352 UMLS/C1253959 denotes branching
T9616 1275-1285 UMLS/C0011546 denotes dependence
T9617 1424-1435 UMLS/C0681814 denotes experiments
T9629 514-524 UMLS/C0017262 denotes expression
T9631 1065-1076 UMLS/C0687133 denotes interaction
T9639 140-147 UMLS/C1881379 denotes lineage
T9640 231-239 UMLS/C1881379 denotes lineages
T9648 270-278 UMLS/C0205539 denotes programs
T9649 493-501 UMLS/C0205539 denotes programs
T9651 424-429 UMLS/C0043177 denotes would
T9654 1333-1341 UMLS/C0178539 denotes cellular
T9657 17-32 UMLS/C1524057 denotes compatible with
T9658 289-304 UMLS/C1524057 denotes compatible with
T9659 679-688 UMLS/C0178555 denotes cofactors
T9660 1082-1091 UMLS/C0178555 denotes cofactors
T9661 1232-1241 UMLS/C0178555 denotes cofactors
T9662 1270-1274 UMLS/C2347790 denotes site
T9666 305-314 UMLS/C1550044 denotes processes
T9671 330-338 UMLS/C2699153 denotes invasion
T9678 665-675 UMLS/C1879547 denotes activation
T9679 1017-1026 UMLS/C1879547 denotes activated
T9680 1204-1214 UMLS/C1879547 denotes activation
T9681 424-429 UMLS/C0600109 denotes would
T9685 185-192 UMLS/C1711343 denotes derived
T9686 91-101 UMLS/C1548958 denotes sequential
T9698 514-524 UMLS/C0185117 denotes expression
T9701 343-352 UMLS/C1881507 denotes branching
T9705 1504-1509 UMLS/C0441889 denotes level
T9707 1270-1274 UMLS/C1546778 denotes site
T9709 1786-1790 UMLS/C0017446 denotes area
T9710 361-371 UMLS/C2700061 denotes transition
T9711 1513-1539 UMLS/C1158770 denotes transcriptional regulation
T9714 626-632 UMLS/C1554204 denotes access
T9715 1577-1581 UMLS/C0040223 denotes time
T9719 1504-1509 UMLS/C0456079 denotes level
T9721 1577-1581 UMLS/C0449243 denotes time
T9734 148-156 UMLS/C0205369 denotes specific
T9735 528-536 UMLS/C0205369 denotes specific
T9736 1223-1231 UMLS/C0205369 denotes specific
T9742 128-136 UMLS/C1883712 denotes addition
T9747 343-352 UMLS/C0205384 denotes branching
T9749 1152-1158 UMLS/C0332466 denotes fusion
T9751 636-643 UMLS/C0205423 denotes certain
T9754 560-570 UMLS/C0441712 denotes Mechanisms
T9755 791-801 UMLS/C0441712 denotes mechanisms
T9760 1597-1605 UMLS/C1441672 denotes observed
T9770 766-771 UMLS/C0006823 denotes could
T9771 876-881 UMLS/C0006823 denotes could
T9772 1176-1181 UMLS/C0006823 denotes could
T9774 62-69 UMLS/C0439661 denotes acquire
T9787 607-615 UMLS/C1549594 denotes restrict
T9792 644-656 UMLS/C1332838 denotes target genes
T9793 950-962 UMLS/C1332838 denotes target genes
T9801 782-790 UMLS/C2362652 denotes possible
T9804 1316-1328 UMLS/C0332324 denotes sensitive to
T9808 185-192 UMLS/C2348040 denotes derived
T9810 1786-1790 UMLS/C1504310 denotes area
T9811 1355-1365 UMLS/C0205227 denotes endogenous
T9812 579-590 UMLS/C0008633 denotes chromosomal
T9820 452-461 UMLS/C1621983 denotes induction
T9823 1404-1418 UMLS/C0162768 denotes fusion protein
T9829 619-625 UMLS/C0205229 denotes expand
T9831 343-352 UMLS/C2700383 denotes branching
T9832 343-352 UMLS/C2700384 denotes branching
T9843 1487-1496 UMLS/C1710082 denotes signaling
T9844 1635-1644 UMLS/C1710082 denotes signaling
T9846 256-269 UMLS/C0678723 denotes developmental
T9847 1195-1203 UMLS/C0686904 denotes need for
T9859 452-461 UMLS/C0205263 denotes induction
T9869 178-184 UMLS/C0599894 denotes Target
T9870 323-329 UMLS/C0599894 denotes target
T9871 1779-1785 UMLS/C0599894 denotes target
T9872 372-377 UMLS/C1552743 denotes state
T9873 782-790 UMLS/C1705910 denotes possible
T9875 148-156 UMLS/C1552740 denotes specific
T9876 528-536 UMLS/C1552740 denotes specific
T9877 1223-1231 UMLS/C1552740 denotes specific
T9882 117-127 UMLS/C0332298 denotes controlled
T9883 930-937 UMLS/C0332298 denotes control
T9890 402-409 UMLS/C1704788 denotes defined
T9892 636-643 UMLS/C1704787 denotes certain
T9896 705-713 UMLS/C0025320 denotes changing
T9897 1459-1465 UMLS/C0025320 denotes change
T9904 185-192 UMLS/C1441547 denotes derived
T9906 76-82 UMLS/C0205286 denotes mature
T9907 35-40 UMLS/C0870071 denotes model
T9908 1450-1458 UMLS/C0439808 denotes profound
T9913 1254-1265 UMLS/C1314677 denotes maintaining
T9917 50-53 UMLS/C0011928 denotes DRG
T9918 1560-1563 UMLS/C0011928 denotes DRG
T9923 305-314 UMLS/C1551390 denotes processes
T9928 916-925 UMLS/C0036576 denotes selection
T9932 117-127 UMLS/C1882979 denotes controlled
T9933 930-937 UMLS/C1882979 denotes control
T9942 243-249 UMLS/C1707719 denotes switch
T9943 1708-1715 UMLS/C0449560 denotes subtype
T9944 1065-1076 UMLS/C1704675 denotes interaction
T9947 815-825 UMLS/C0522506 denotes downstream
T9964 372-377 UMLS/C1442792 denotes state
T9971 1577-1581 UMLS/C0392761 denotes time
T9978 305-314 UMLS/C1522240 denotes processes
T9980 1577-1581 UMLS/C1632851 denotes time
T9992 987-990 UMLS/C0812380 denotes ETS
T9993 1266-1269 UMLS/C0812380 denotes ETS
T9994 1366-1369 UMLS/C0812380 denotes ETS
T9995 1483-1486 UMLS/C0812380 denotes ETS
T9996 1631-1634 UMLS/C0812380 denotes ETS
T10000 1577-1581 UMLS/C1547403 denotes time
T10007 1162-1165 UMLS/C1704722 denotes EWS
T10012 705-713 UMLS/C0392747 denotes changing
T10013 1459-1465 UMLS/C0392747 denotes change
T10016 782-790 UMLS/C0332149 denotes possible
T10022 1655-1669 UMLS/C0332162 denotes with the onset
T10026 1152-1158 UMLS/C1293131 denotes fusion
T10040 1275-1285 UMLS/C0439857 denotes dependence
T10041 718-724 UMLS/C0441472 denotes action
T10042 1473-1479 UMLS/C0441472 denotes action
T10045 1716-1729 UMLS/C2348235 denotes specification
T10051 1270-1274 UMLS/C0205145 denotes site
T10058 537-558 UMLS/C0040648 denotes transcription factors
T10059 739-760 UMLS/C0040648 denotes transcription factors
T10060 855-875 UMLS/C0040648 denotes transcription factor
T10061 991-1012 UMLS/C0040648 denotes transcription factors
T10062 1370-1391 UMLS/C0040648 denotes transcription factors
T10070 1786-1790 UMLS/C0205146 denotes area
T10077 477-492 UMLS/C0040649 denotes transcriptional
T10078 826-841 UMLS/C0040649 denotes transcriptional
T10079 1606-1621 UMLS/C0040649 denotes transcriptional
T10080 1577-1581 UMLS/C1548318 denotes time
T10084 1572-1576 UMLS/C0205136 denotes over
T10090 1103-1135 UMLS/C0033666 denotes post-translational modifications
T10102 117-127 UMLS/C0009932 denotes controlled
T10103 930-937 UMLS/C0009932 denotes control
T10118 987-990 UMLS/C1705691 denotes ETS
T10119 1266-1269 UMLS/C1705691 denotes ETS
T10120 1366-1369 UMLS/C1705691 denotes ETS
T10121 1483-1486 UMLS/C1705691 denotes ETS
T10122 1631-1634 UMLS/C1705691 denotes ETS
T10128 1758-1769 UMLS/C0348018 denotes projections
T10130 607-615 UMLS/C1548390 denotes restrict
T10131 842-849 UMLS/C1979963 denotes profile
T10132 689-700 UMLS/C1273518 denotes responsible
T10133 1685-1695 UMLS/C0220905 denotes regulation
T10137 1035-1042 UMLS/C1963578 denotes release
T10143 1758-1769 UMLS/C0033363 denotes projections
T10150 62-69 UMLS/C1706701 denotes acquire
T10151 385-396 UMLS/C1706701 denotes acquisition
T10155 1061-1064 UMLS/C1550513 denotes via
T10156 1099-1102 UMLS/C1550513 denotes via
T10159 607-615 UMLS/C1610594 denotes restrict
T10162 256-269 UMLS/C0458003 denotes developmental
T10165 4-12 UMLS/C2607943 denotes findings
T10173 1758-1769 UMLS/C0016538 denotes projections
T10184 54-61 UMLS/C0027882 denotes neurons
T10185 1564-1571 UMLS/C0027882 denotes neurons
T10187 305-314 UMLS/C1709694 denotes processes
T10190 705-713 UMLS/C1705241 denotes changing
T10191 1459-1465 UMLS/C1705241 denotes change
T10193 896-903 UMLS/C0333051 denotes shifted
T10194 1622-1627 UMLS/C0333051 denotes shift
T10205 117-127 UMLS/C1550141 denotes controlled
T10206 930-937 UMLS/C1550141 denotes control
T10214 270-278 UMLS/C1709697 denotes programs
T10215 493-501 UMLS/C1709697 denotes programs
T10217 626-632 UMLS/C0444454 denotes access
T10218 1162-1165 UMLS/C0808901 denotes EWS
T10221 705-713 UMLS/C0443172 denotes changing
T10222 1459-1465 UMLS/C0443172 denotes change
T10225 560-570 UMLS/C1706376 denotes Mechanisms
T10226 791-801 UMLS/C1706376 denotes mechanisms
T10229 1685-1695 UMLS/C1327622 denotes regulation
T10231 1424-1435 UMLS/C1706386 denotes experiments
T10236 50-53 UMLS/C1414151 denotes DRG
T10237 1560-1563 UMLS/C1414151 denotes DRG
T10244 91-101 UMLS/C1705294 denotes sequential
T10245 1708-1715 UMLS/C2003942 denotes subtype
T10255 117-127 UMLS/C1547100 denotes controlled
T10256 930-937 UMLS/C1547100 denotes control
T10262 679-688 UMLS/C1541159 denotes cofactors
T10263 1082-1091 UMLS/C1541159 denotes cofactors
T10264 1232-1241 UMLS/C1541159 denotes cofactors
T10268 372-377 UMLS/C1301808 denotes state
T10278 1487-1496 UMLS/C0037083 denotes signaling
T10279 1635-1644 UMLS/C0037083 denotes signaling
T10290 766-771 UMLS/C0344312 denotes could
T10291 876-881 UMLS/C0344312 denotes could
T10292 1176-1181 UMLS/C0344312 denotes could
T10300 117-127 UMLS/C0243148 denotes controlled
T10301 930-937 UMLS/C0243148 denotes control
T10308 1577-1581 UMLS/C1704250 denotes time
T10327 330-338 UMLS/C1269955 denotes invasion
T10336 178-184 UMLS/C1521840 denotes Target
T10337 323-329 UMLS/C1521840 denotes target
T10338 1779-1785 UMLS/C1521840 denotes target
T10343 607-615 UMLS/C0443288 denotes restrict
T10345 1035-1042 UMLS/C0680255 denotes release
T10346 1035-1042 UMLS/C0439180 denotes release
T10354 222-230 UMLS/C0521390 denotes neuronal
T10355 410-418 UMLS/C0521390 denotes neuronal
T10356 1699-1707 UMLS/C0521390 denotes neuronal
T10366 1333-1341 UMLS/C0007634 denotes cellular
T10371 35-40 UMLS/C0026339 denotes model
T10372 35-40 UMLS/C0026336 denotes model
T10378 270-278 UMLS/C0376691 denotes programs
T10379 493-501 UMLS/C0376691 denotes programs
T10392 987-990 UMLS/C0813971 denotes ETS
T10393 1266-1269 UMLS/C0813971 denotes ETS
T10394 1366-1369 UMLS/C0813971 denotes ETS
T10395 1483-1486 UMLS/C0813971 denotes ETS
T10396 1631-1634 UMLS/C0813971 denotes ETS
T10397 305-314 UMLS/C1184743 denotes processes
T10399 201-204 UMLS/C1551336 denotes act
T10402 896-903 UMLS/C2347509 denotes shifted
T10403 1622-1627 UMLS/C2347509 denotes shift
T10406 1685-1695 UMLS/C0851285 denotes regulation
T10409 1065-1076 UMLS/C1546938 denotes interaction
T10417 117-127 UMLS/C2587213 denotes controlled
T10418 930-937 UMLS/C2587213 denotes control
T10423 1648-1654 UMLS/C1709450 denotes paired
T10426 1254-1265 UMLS/C0024501 denotes maintaining
T10430 1399-1403 UMLS/C0323983 denotes this

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10509 50-53 UBERON:0000044 denotes DRG
T10510 54-61 CL:0000540 denotes neurons
T10511 117-127 GO:0065007 denotes controlled
T10512 222-230 CL:0000540 denotes neuronal
T10513 410-418 CL:0000540 denotes neuronal
T10514 514-524 GO:0010467 denotes expression
T10515 651-656 SO:0000704 denotes genes
T10516 679-688 CHEBI:23357 denotes cofactors
T10517 930-937 GO:0065007 denotes control
T10518 957-962 SO:0000704 denotes genes
T10519 1082-1091 CHEBI:23357 denotes cofactors
T10520 1108-1121 GO:0006412 denotes translational
T10521 1162-1165 PR:000007243 denotes EWS
T10522 1171-1175 PR:000007227 denotes Pea3
T10523 1232-1241 CHEBI:23357 denotes cofactors
T10524 1302-1305 PR:000007243 denotes EWS
T10525 1306-1310 PR:000007227 denotes Pea3
T10526 1529-1539 GO:0065007 denotes regulation
T10527 1552-1559 GO:0007067 denotes mitotic
T10528 1560-1563 UBERON:0000044 denotes DRG
T10529 1564-1571 CL:0000540 denotes neurons
T10530 1685-1695 GO:0065007 denotes regulation
T10531 1699-1707 CL:0000540 denotes neuronal
T10532 1751-1769 GO:0030424 denotes axonal projections