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PMC:1084331 / 1235-1969 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1510 0-8 JJ denotes Neuronal
T1511 9-24 NN denotes differentiation
T1512 25-27 VBZ denotes is
T1513 28-29 DT denotes a
T1514 41-48 NN denotes process
T1515 30-40 JJ denotes protracted
T1516 49-55 IN denotes during
T1517 86-93 VBP denotes express
T1518 56-61 WDT denotes which
T1519 62-67 RB denotes newly
T1520 68-77 VBN denotes generated
T1521 78-85 NNS denotes neurons
T1522 94-102 JJ denotes distinct
T1523 126-134 NNS denotes programs
T1524 103-111 JJ denotes cellular
T1525 112-115 CC denotes and
T1526 116-125 JJ denotes molecular
T1527 135-137 IN denotes at
T1528 138-145 JJ denotes precise
T1529 146-151 NNS denotes times
T1530 152-158 IN denotes during
T1531 159-164 PRP$ denotes their
T1532 165-175 NN denotes maturation
T1533 175-177 : denotes :
T1534 177-181 JJ denotes long
T1535 182-190 NN denotes distance
T1536 181-182 HYPH denotes -
T1537 196-205 NN denotes outgrowth
T1538 191-195 NN denotes axon
T1539 205-207 , denotes ,
T1540 207-217 JJ denotes subsequent
T1541 227-236 NN denotes branching
T1542 218-226 JJ denotes terminal
T1543 236-238 , denotes ,
T1544 238-241 CC denotes and
T1545 242-249 RB denotes finally
T1546 250-264 NN denotes synaptogenesis
T1547 264-265 . denotes .
T1548 265-481 sentence denotes Many important aspects of neuronal character appear to be acquired through the expression of transcription factors at progenitor cell stages, whereas others depend on expression immediately upon cell cycle exit [1].
T1549 266-270 JJ denotes Many
T1550 281-288 NNS denotes aspects
T1551 271-280 JJ denotes important
T1552 311-317 VBP denotes appear
T1553 289-291 IN denotes of
T1554 292-300 JJ denotes neuronal
T1555 301-310 NN denotes character
T1556 318-320 TO denotes to
T1557 324-332 VBN denotes acquired
T1558 321-323 VB denotes be
T1559 333-340 IN denotes through
T1560 341-344 DT denotes the
T1561 345-355 NN denotes expression
T1562 356-358 IN denotes of
T1563 359-372 NN denotes transcription
T1564 373-380 NNS denotes factors
T1565 381-383 IN denotes at
T1566 384-394 NN denotes progenitor
T1567 400-406 NNS denotes stages
T1568 395-399 NN denotes cell
T1569 406-408 , denotes ,
T1570 408-415 IN denotes whereas
T1571 423-429 VBP denotes depend
T1572 416-422 NNS denotes others
T1573 430-432 IN denotes on
T1574 433-443 NN denotes expression
T1575 444-455 RB denotes immediately
T1576 456-460 IN denotes upon
T1577 461-465 NN denotes cell
T1578 466-471 NN denotes cycle
T1579 472-476 NN denotes exit
T1580 477-478 -LRB- denotes [
T1581 478-479 CD denotes 1
T1582 479-480 -RRB- denotes ]
T1583 480-481 . denotes .
T1584 481-734 sentence denotes But whether the orderly expression and activity of transcriptional programs at much later developmental stages, well after cell cycle exit, is an essential step in the progression of neuronal differentiation and circuit assembly has yet to be resolved.
T1585 482-485 CC denotes But
T1586 711-714 VBZ denotes has
T1587 486-493 IN denotes whether
T1588 622-624 VBZ denotes is
T1589 494-497 DT denotes the
T1590 506-516 NN denotes expression
T1591 498-505 JJ denotes orderly
T1592 517-520 CC denotes and
T1593 521-529 NN denotes activity
T1594 530-532 IN denotes of
T1595 533-548 JJ denotes transcriptional
T1596 549-557 NNS denotes programs
T1597 558-560 IN denotes at
T1598 561-565 RB denotes much
T1599 566-571 JJ denotes later
T1600 586-592 NNS denotes stages
T1601 572-585 JJ denotes developmental
T1602 592-594 , denotes ,
T1603 594-598 RB denotes well
T1604 599-604 IN denotes after
T1605 605-609 NN denotes cell
T1606 610-615 NN denotes cycle
T1607 616-620 NN denotes exit
T1608 620-622 , denotes ,
T1609 625-627 DT denotes an
T1610 638-642 NN denotes step
T1611 628-637 JJ denotes essential
T1612 643-645 IN denotes in
T1613 646-649 DT denotes the
T1614 650-661 NN denotes progression
T1615 662-664 IN denotes of
T1616 665-673 JJ denotes neuronal
T1617 674-689 NN denotes differentiation
T1618 690-693 CC denotes and
T1619 694-701 NN denotes circuit
T1620 702-710 NN denotes assembly
T1621 715-718 RB denotes yet
T1622 719-721 TO denotes to
T1623 725-733 VBN denotes resolved
T1624 722-724 VB denotes be
T1625 733-734 . denotes .
R156 T1510 T1511 amod Neuronal,differentiation
R157 T1511 T1512 nsubj differentiation,is
R158 T1513 T1514 det a,process
R159 T1514 T1512 attr process,is
R160 T1515 T1514 amod protracted,process
R161 T1516 T1517 prep during,express
R162 T1517 T1514 relcl express,process
R163 T1518 T1516 pobj which,during
R164 T1519 T1520 advmod newly,generated
R165 T1520 T1521 amod generated,neurons
R166 T1521 T1517 nsubj neurons,express
R167 T1522 T1523 amod distinct,programs
R168 T1523 T1517 dative programs,express
R169 T1524 T1523 amod cellular,programs
R170 T1525 T1524 cc and,cellular
R171 T1526 T1524 conj molecular,cellular
R172 T1527 T1517 prep at,express
R173 T1528 T1529 amod precise,times
R174 T1529 T1527 pobj times,at
R175 T1530 T1517 prep during,express
R176 T1531 T1532 poss their,maturation
R177 T1532 T1530 pobj maturation,during
R178 T1533 T1517 punct : ,express
R179 T1534 T1535 amod long,distance
R180 T1535 T1537 compound distance,outgrowth
R181 T1536 T1535 punct -,distance
R182 T1537 T1517 dobj outgrowth,express
R183 T1538 T1537 compound axon,outgrowth
R184 T1539 T1537 punct ", ",outgrowth
R185 T1540 T1541 amod subsequent,branching
R186 T1541 T1537 conj branching,outgrowth
R187 T1542 T1541 amod terminal,branching
R188 T1543 T1541 punct ", ",branching
R189 T1544 T1541 cc and,branching
R190 T1545 T1546 advmod finally,synaptogenesis
R191 T1546 T1541 conj synaptogenesis,branching
R192 T1547 T1512 punct .,is
R193 T1549 T1550 amod Many,aspects
R194 T1550 T1552 nsubj aspects,appear
R195 T1551 T1550 amod important,aspects
R196 T1553 T1550 prep of,aspects
R197 T1554 T1555 amod neuronal,character
R198 T1555 T1553 pobj character,of
R199 T1556 T1557 aux to,acquired
R200 T1557 T1552 xcomp acquired,appear
R201 T1558 T1557 auxpass be,acquired
R202 T1559 T1557 prep through,acquired
R203 T1560 T1561 det the,expression
R204 T1561 T1559 pobj expression,through
R205 T1562 T1561 prep of,expression
R206 T1563 T1564 compound transcription,factors
R207 T1564 T1562 pobj factors,of
R208 T1565 T1561 prep at,expression
R209 T1566 T1567 compound progenitor,stages
R210 T1567 T1565 pobj stages,at
R211 T1568 T1567 compound cell,stages
R212 T1569 T1552 punct ", ",appear
R213 T1570 T1571 mark whereas,depend
R214 T1571 T1552 advcl depend,appear
R215 T1572 T1571 nsubj others,depend
R216 T1573 T1571 prep on,depend
R217 T1574 T1573 pobj expression,on
R218 T1575 T1576 advmod immediately,upon
R219 T1576 T1571 prep upon,depend
R220 T1577 T1578 compound cell,cycle
R221 T1578 T1579 compound cycle,exit
R222 T1579 T1576 pobj exit,upon
R223 T1580 T1581 punct [,1
R224 T1581 T1571 parataxis 1,depend
R225 T1582 T1581 punct ],1
R226 T1583 T1552 punct .,appear
R227 T1585 T1586 cc But,has
R228 T1587 T1588 mark whether,is
R229 T1588 T1586 csubj is,has
R230 T1589 T1590 det the,expression
R231 T1590 T1588 nsubj expression,is
R232 T1591 T1590 amod orderly,expression
R233 T1592 T1590 cc and,expression
R234 T1593 T1590 conj activity,expression
R235 T1594 T1590 prep of,expression
R236 T1595 T1596 amod transcriptional,programs
R237 T1596 T1594 pobj programs,of
R238 T1597 T1590 prep at,expression
R239 T1598 T1599 advmod much,later
R240 T1599 T1600 amod later,stages
R241 T1600 T1597 pobj stages,at
R242 T1601 T1600 amod developmental,stages
R243 T1602 T1590 punct ", ",expression
R244 T1603 T1604 advmod well,after
R245 T1604 T1590 prep after,expression
R246 T1605 T1606 compound cell,cycle
R247 T1606 T1607 compound cycle,exit
R248 T1607 T1604 pobj exit,after
R249 T1608 T1588 punct ", ",is
R250 T1609 T1610 det an,step
R251 T1610 T1588 attr step,is
R252 T1611 T1610 amod essential,step
R253 T1612 T1610 prep in,step
R254 T1613 T1614 det the,progression
R255 T1614 T1612 pobj progression,in
R256 T1615 T1614 prep of,progression
R257 T1616 T1617 amod neuronal,differentiation
R258 T1617 T1615 pobj differentiation,of
R259 T1618 T1617 cc and,differentiation
R260 T1619 T1620 compound circuit,assembly
R261 T1620 T1617 conj assembly,differentiation
R262 T1621 T1586 advmod yet,has
R263 T1622 T1623 aux to,resolved
R264 T1623 T1586 xcomp resolved,has
R265 T1624 T1623 auxpass be,resolved
R266 T1625 T1586 punct .,has

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1339 0-8 CL:0000540 denotes Neuronal
T1340 9-24 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T1341 78-85 CL:0000540 denotes neurons
T1342 86-93 GO:0010467 denotes express
T1343 103-111 CL_GO_EXT:cell denotes cellular
T1344 116-125 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T1345 165-175 GO_PATO_EXT:biological_maturation denotes maturation
T1346 177-205 GO:0007409 denotes long-distance axon outgrowth
T1347 191-195 GO:0030424 denotes axon
T1348 218-226 GO_UBERON_EXT:nerve_ending_or_neuron_projection_terminus denotes terminal
T1349 250-264 GO:0007416 denotes synaptogenesis
T1350 292-300 CL:0000540 denotes neuronal
T1351 345-355 GO:0010467 denotes expression
T1352 359-372 GO_EXT:transcription denotes transcription
T1353 359-380 GO_EXT:transcription_factor denotes transcription factors
T1354 395-399 CL_GO_EXT:cell denotes cell
T1355 433-443 GO:0010467 denotes expression
T1356 461-465 CL_GO_EXT:cell denotes cell
T1357 461-471 GO:0007049 denotes cell cycle
T1358 506-516 GO:0010467 denotes expression
T1359 533-548 GO_EXT:transcription denotes transcriptional
T1360 605-609 CL_GO_EXT:cell denotes cell
T1361 605-615 GO:0007049 denotes cell cycle
T1362 665-673 CL:0000540 denotes neuronal
T1363 665-673 _FRAGMENT denotes neuronal
T1364 694-701 UBERON:0024914 denotes circuit
T1365 674-689 GO_RO_EXT:developmental_differentiation_process denotes differentiation
R152 T1364 T1363 _lexicallyChainedTo circuit,neuronal

2_test

Id Subject Object Predicate Lexical cue
15836427-9988216-84719594 478-479 9988216 denotes 1
T16930 478-479 9988216 denotes 1

biosemtest

Id Subject Object Predicate Lexical cue
T571 41-48 UMLS/C1551390 denotes process
T587 400-406 UMLS/C1300072 denotes stages
T598 218-226 UMLS/C0205088 denotes terminal
T600 472-476 UMLS/C1272703 denotes exit
T601 616-620 UMLS/C1272703 denotes exit
T603 400-406 UMLS/C1306673 denotes stages
T605 301-310 UMLS/C0007952 denotes character
T607 165-175 UMLS/C1254042 denotes maturation
T620 566-571 UMLS/C0205087 denotes later
T627 146-151 UMLS/C0392761 denotes times
T631 318-320 UMLS/C0319022 denotes to
T632 719-721 UMLS/C0319022 denotes to
T642 41-48 UMLS/C1522240 denotes process
T643 482-485 UMLS/C0005341 denotes But
T646 146-151 UMLS/C1632851 denotes times
T666 146-151 UMLS/C1547403 denotes times
T670 281-288 UMLS/C1879746 denotes aspects
T673 702-710 UMLS/C1879748 denotes assembly
T695 594-598 UMLS/C0205170 denotes well
T708 0-24 UMLS/C1518294 denotes Neuronal differentiation
T709 665-689 UMLS/C1518294 denotes neuronal differentiation
T718 301-310 UMLS/C1548327 denotes character
T723 416-422 UMLS/C1955473 denotes others
T725 227-236 UMLS/C1706131 denotes branching
T727 638-642 UMLS/C1705117 denotes step
T735 472-476 UMLS/C0337094 denotes exit
T736 616-620 UMLS/C0337094 denotes exit
T738 359-380 UMLS/C0040648 denotes transcription factors
T743 227-236 UMLS/C1253959 denotes branching
T745 533-548 UMLS/C0040649 denotes transcriptional
T749 146-151 UMLS/C1548318 denotes times
T755 416-422 UMLS/C1556044 denotes others
T764 86-93 UMLS/C0017262 denotes express
T765 345-355 UMLS/C0017262 denotes expression
T766 433-443 UMLS/C0017262 denotes expression
T767 506-516 UMLS/C0017262 denotes expression
T776 521-529 UMLS/C1561536 denotes activity
T782 472-476 UMLS/C1550550 denotes exit
T783 616-620 UMLS/C1550550 denotes exit
T791 86-93 UMLS/C1515670 denotes express
T802 86-93 UMLS/C1171362 denotes express
T814 599-604 UMLS/C0687676 denotes after
T818 126-134 UMLS/C0205539 denotes programs
T819 549-557 UMLS/C0205539 denotes programs
T824 444-455 UMLS/C0205548 denotes immediately
T825 191-195 UMLS/C1458149 denotes axon
T828 103-111 UMLS/C0178539 denotes cellular
T832 41-48 UMLS/C1550044 denotes process
T848 301-310 UMLS/C0486537 denotes character
T858 116-125 UMLS/C1521991 denotes molecular
T860 324-332 UMLS/C1706701 denotes acquired
T864 345-355 UMLS/C0185117 denotes expression
T865 433-443 UMLS/C0185117 denotes expression
T866 506-516 UMLS/C0185117 denotes expression
T877 227-236 UMLS/C1881507 denotes branching
T885 250-264 UMLS/C0597545 denotes synaptogenesis
T897 461-471 UMLS/C1155839 denotes cell cycle
T898 605-615 UMLS/C1155839 denotes cell cycle
T900 78-85 UMLS/C0027882 denotes neurons
T908 41-48 UMLS/C1709694 denotes process
T918 650-661 UMLS/C0449258 denotes progression
T919 146-151 UMLS/C0040223 denotes times
T920 126-134 UMLS/C1709697 denotes programs
T921 549-557 UMLS/C1709697 denotes programs
T929 146-151 UMLS/C0449243 denotes times
T958 711-714 UMLS/C2348947 denotes has
T965 400-406 UMLS/C0205390 denotes stages
T975 227-236 UMLS/C0205384 denotes branching
T980 266-270 UMLS/C0439064 denotes Many
T981 561-565 UMLS/C0439064 denotes much
T988 521-529 UMLS/C0441655 denotes activity
T992 638-642 UMLS/C0454366 denotes step
T1006 301-310 UMLS/C1553411 denotes character
T1009 218-226 UMLS/C1705314 denotes terminal
T1011 218-226 UMLS/C1705315 denotes terminal
T1014 702-710 UMLS/C1706853 denotes assembly
T1025 301-310 UMLS/C2350015 denotes character
T1026 324-332 UMLS/C0439661 denotes acquired
T1045 725-733 UMLS/C2699488 denotes resolved
T1049 638-642 UMLS/C1704379 denotes step
T1064 521-529 UMLS/C0439167 denotes activity
T1070 146-151 UMLS/C1704250 denotes times
T1074 566-571 UMLS/C1279941 denotes later
T1084 638-642 UMLS/C1261552 denotes step
T1094 191-195 UMLS/C0004461 denotes axon
T1100 628-637 UMLS/C0205224 denotes essential
T1105 281-288 UMLS/C1547011 denotes aspects
T1108 400-406 UMLS/C0332305 denotes stages
T1109 281-288 UMLS/C0700364 denotes aspects
T1114 227-236 UMLS/C2700383 denotes branching
T1124 227-236 UMLS/C2700384 denotes branching
T1144 725-733 UMLS/C1514893 denotes resolved
T1148 572-592 UMLS/C0870411 denotes developmental stages
T1156 292-300 UMLS/C0521390 denotes neuronal
T1168 103-111 UMLS/C0007634 denotes cellular
T1169 207-217 UMLS/C0332282 denotes subsequent
T1174 126-134 UMLS/C0376691 denotes programs
T1175 549-557 UMLS/C0376691 denotes programs
T1183 599-604 UMLS/C0231290 denotes after
T1187 384-399 UMLS/C0038250 denotes progenitor cell
T1199 41-48 UMLS/C1184743 denotes process
T1202 650-661 UMLS/C0242656 denotes progression
T1203 461-471 UMLS/C0007586 denotes cell cycle
T1204 605-615 UMLS/C0007586 denotes cell cycle

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1230 0-8 CL:0000540 denotes Neuronal
T1231 78-85 CL:0000540 denotes neurons
T1232 86-93 GO:0010467 denotes express
T1233 177-205 GO:0007409 denotes long-distance axon outgrowth
T1234 191-195 GO:0030424 denotes axon
T1235 250-264 GO:0007416 denotes synaptogenesis
T1236 292-300 CL:0000540 denotes neuronal
T1237 345-355 GO:0010467 denotes expression
T1238 433-443 GO:0010467 denotes expression
T1239 461-471 GO:0007049 denotes cell cycle
T1240 506-516 GO:0010467 denotes expression
T1241 605-615 GO:0007049 denotes cell cycle
T1242 665-673 CL:0000540 denotes neuronal
T1243 665-673 _FRAGMENT denotes neuronal
T1244 694-701 UBERON:0024914 denotes circuit
R148 T1244 T1243 _lexicallyChainedTo circuit,neuronal