PMC:1079843 / 18019-18896 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1079843","sourcedb":"PMC","sourceid":"1079843","source_url":"http://www.ncbi.nlm.nih.gov/pmc/1079843","text":"SNP genotyping and single locus association analysis\nFor further association analysis, all 5 SNPs identified in this study, plus one polymorphism in the promoter region (5'flankingSNP1;[33]) and four selected from the dbSNP database (in2SNP1, in3SNP1, in6SNP1, and in7SNP1), were genotyped with MSBE or ARMS (Table 1). All genotypes were in Hardy-Weinberg equilibrium (HWE), except for the G-347 T marker in the promoter region that had departure from the HWE in both controls (p = 0.024) and patients (p = 0.024). Genotype coverage was generally good and about 90% of the subjects were successfully typed.\nAll 10 SNPs were genotyped and have been analyzed by Fisher's exact test between the case and control groups. No association can be obtained between any of the TPH1 gene polymorphisms and BPD. The genotypic and allelic distributions of each marker are listed in Table 2.","divisions":[{"label":"Title","span":{"begin":0,"end":52}}],"tracks":[{"project":"biosemtest","denotations":[{"id":"T2534","span":{"begin":309,"end":314},"obj":"UMLS/C1706074"},{"id":"T2535","span":{"begin":869,"end":874},"obj":"UMLS/C1706074"},{"id":"T2536","span":{"begin":309,"end":314},"obj":"UMLS/C1706073"},{"id":"T2537","span":{"begin":869,"end":874},"obj":"UMLS/C1706073"},{"id":"T2538","span":{"begin":468,"end":476},"obj":"UMLS/C1882979"},{"id":"T2539","span":{"begin":468,"end":476},"obj":"UMLS/C1550141"},{"id":"T2540","span":{"begin":98,"end":108},"obj":"UMLS/C1551388"},{"id":"T2541","span":{"begin":0,"end":3},"obj":"UMLS/C0206417"},{"id":"T2542","span":{"begin":93,"end":97},"obj":"UMLS/C0206417"},{"id":"T2543","span":{"begin":614,"end":618},"obj":"UMLS/C0206417"},{"id":"T2544","span":{"begin":437,"end":446},"obj":"UMLS/C1706081"},{"id":"T2545","span":{"begin":19,"end":25},"obj":"UMLS/C1549113"},{"id":"T2546","span":{"begin":573,"end":581},"obj":"UMLS/C2697811"},{"id":"T2547","span":{"begin":224,"end":232},"obj":"UMLS/C0242356"},{"id":"T2548","span":{"begin":309,"end":314},"obj":"UMLS/C0039224"},{"id":"T2549","span":{"begin":869,"end":874},"obj":"UMLS/C0039224"},{"id":"T2550","span":{"begin":117,"end":122},"obj":"UMLS/C0947630"},{"id":"T2551","span":{"begin":117,"end":122},"obj":"UMLS/C0557651"},{"id":"T2552","span":{"begin":826,"end":839},"obj":"UMLS/C0520511"},{"id":"T2553","span":{"begin":524,"end":532},"obj":"UMLS/C1999244"},{"id":"T2554","span":{"begin":356,"end":367},"obj":"UMLS/C0014653"},{"id":"T2555","span":{"begin":826,"end":839},"obj":"UMLS/C1704711"},{"id":"T2556","span":{"begin":98,"end":108},"obj":"UMLS/C0205396"},{"id":"T2557","span":{"begin":200,"end":208},"obj":"UMLS/C1707391"},{"id":"T2558","span":{"begin":767,"end":776},"obj":"UMLS/C1420870"},{"id":"T2559","span":{"begin":795,"end":798},"obj":"UMLS/C0006287"},{"id":"T2560","span":{"begin":0,"end":3},"obj":"UMLS/C0752046"},{"id":"T2561","span":{"begin":93,"end":97},"obj":"UMLS/C0752046"},{"id":"T2562","span":{"begin":614,"end":618},"obj":"UMLS/C0752046"},{"id":"T2563","span":{"begin":133,"end":145},"obj":"UMLS/C1882417"},{"id":"T2564","span":{"begin":468,"end":476},"obj":"UMLS/C1547100"},{"id":"T2565","span":{"begin":117,"end":122},"obj":"UMLS/C1880229"},{"id":"T2566","span":{"begin":32,"end":43},"obj":"UMLS/C0439849"},{"id":"T2567","span":{"begin":65,"end":76},"obj":"UMLS/C0439849"},{"id":"T2568","span":{"begin":720,"end":731},"obj":"UMLS/C0439849"},{"id":"T2569","span":{"begin":547,"end":551},"obj":"UMLS/C0205170"},{"id":"T2570","span":{"begin":19,"end":25},"obj":"UMLS/C0205171"},{"id":"T2571","span":{"begin":493,"end":501},"obj":"UMLS/C1550655"},{"id":"T2572","span":{"begin":44,"end":52},"obj":"UMLS/C1524024"},{"id":"T2573","span":{"begin":77,"end":85},"obj":"UMLS/C1524024"},{"id":"T2574","span":{"begin":129,"end":132},"obj":"UMLS/C0205447"},{"id":"T2575","span":{"begin":547,"end":551},"obj":"UMLS/C1561563"},{"id":"T2576","span":{"begin":573,"end":581},"obj":"UMLS/C0681850"},{"id":"T2577","span":{"begin":732,"end":735},"obj":"UMLS/C0006823"},{"id":"T2578","span":{"begin":32,"end":43},"obj":"UMLS/C0596306"},{"id":"T2579","span":{"begin":65,"end":76},"obj":"UMLS/C0596306"},{"id":"T2580","span":{"begin":720,"end":731},"obj":"UMLS/C0596306"},{"id":"T2581","span":{"begin":133,"end":145},"obj":"UMLS/C0032529"},{"id":"T2582","span":{"begin":195,"end":199},"obj":"UMLS/C0205450"},{"id":"T2583","span":{"begin":4,"end":14},"obj":"UMLS/C1285573"},{"id":"T2584","span":{"begin":280,"end":289},"obj":"UMLS/C1285573"},{"id":"T2585","span":{"begin":323,"end":332},"obj":"UMLS/C1285573"},{"id":"T2586","span":{"begin":515,"end":523},"obj":"UMLS/C1285573"},{"id":"T2587","span":{"begin":624,"end":633},"obj":"UMLS/C1285573"},{"id":"T2588","span":{"begin":224,"end":232},"obj":"UMLS/C0993637"},{"id":"T2589","span":{"begin":26,"end":31},"obj":"UMLS/C1708726"},{"id":"T2590","span":{"begin":573,"end":581},"obj":"UMLS/C2349001"},{"id":"T2591","span":{"begin":859,"end":865},"obj":"UMLS/C0745732"},{"id":"T2592","span":{"begin":493,"end":501},"obj":"UMLS/C1578485"},{"id":"T2593","span":{"begin":303,"end":307},"obj":"UMLS/C2681631"},{"id":"T2594","span":{"begin":493,"end":501},"obj":"UMLS/C1578484"},{"id":"T2595","span":{"begin":732,"end":735},"obj":"UMLS/C0344312"},{"id":"T2596","span":{"begin":493,"end":501},"obj":"UMLS/C1578486"},{"id":"T2597","span":{"begin":493,"end":501},"obj":"UMLS/C1578481"},{"id":"T2598","span":{"begin":493,"end":501},"obj":"UMLS/C1578480"},{"id":"T2599","span":{"begin":493,"end":501},"obj":"UMLS/C1578483"},{"id":"T2600","span":{"begin":493,"end":501},"obj":"UMLS/C1578479"},{"id":"T2601","span":{"begin":32,"end":43},"obj":"UMLS/C0004083"},{"id":"T2602","span":{"begin":65,"end":76},"obj":"UMLS/C0004083"},{"id":"T2603","span":{"begin":720,"end":731},"obj":"UMLS/C0004083"},{"id":"T2604","span":{"begin":468,"end":476},"obj":"UMLS/C0243148"},{"id":"T2605","span":{"begin":573,"end":581},"obj":"UMLS/C1706203"},{"id":"T2606","span":{"begin":117,"end":122},"obj":"UMLS/C1705923"},{"id":"T2607","span":{"begin":493,"end":501},"obj":"UMLS/C0030705"},{"id":"T2608","span":{"begin":692,"end":708},"obj":"UMLS/C0872128"},{"id":"T2609","span":{"begin":356,"end":367},"obj":"UMLS/C1547026"},{"id":"T2610","span":{"begin":117,"end":122},"obj":"UMLS/C2349977"},{"id":"T2611","span":{"begin":437,"end":446},"obj":"UMLS/C1555578"},{"id":"T2612","span":{"begin":468,"end":476},"obj":"UMLS/C0009932"},{"id":"T2613","span":{"begin":701,"end":715},"obj":"UMLS/C0009932"},{"id":"T2614","span":{"begin":117,"end":122},"obj":"UMLS/C2603343"},{"id":"T2615","span":{"begin":44,"end":52},"obj":"UMLS/C0936012"},{"id":"T2616","span":{"begin":77,"end":85},"obj":"UMLS/C0936012"},{"id":"T2617","span":{"begin":648,"end":656},"obj":"UMLS/C0936012"},{"id":"T2618","span":{"begin":19,"end":25},"obj":"UMLS/C0037179"},{"id":"T2619","span":{"begin":218,"end":223},"obj":"UMLS/C1710090"},{"id":"T2620","span":{"begin":859,"end":865},"obj":"UMLS/C0329590"},{"id":"T2621","span":{"begin":124,"end":128},"obj":"UMLS/C0332287"},{"id":"T2622","span":{"begin":375,"end":385},"obj":"UMLS/C0332300"},{"id":"T2623","span":{"begin":739,"end":747},"obj":"UMLS/C1301820"},{"id":"T2624","span":{"begin":98,"end":108},"obj":"UMLS/C1550043"},{"id":"T2625","span":{"begin":493,"end":501},"obj":"UMLS/C1705908"},{"id":"T2626","span":{"begin":468,"end":476},"obj":"UMLS/C0332298"},{"id":"T2627","span":{"begin":547,"end":551},"obj":"UMLS/C0038848"},{"id":"T2628","span":{"begin":117,"end":122},"obj":"UMLS/C0008976"},{"id":"T2629","span":{"begin":547,"end":551},"obj":"UMLS/C0332272"},{"id":"T2630","span":{"begin":117,"end":122},"obj":"UMLS/C0008972"},{"id":"T2631","span":{"begin":32,"end":43},"obj":"UMLS/C0699792"},{"id":"T2632","span":{"begin":65,"end":76},"obj":"UMLS/C0699792"},{"id":"T2633","span":{"begin":720,"end":731},"obj":"UMLS/C0699792"},{"id":"T2634","span":{"begin":0,"end":3},"obj":"UMLS/C1527094"},{"id":"T2635","span":{"begin":93,"end":97},"obj":"UMLS/C1527094"},{"id":"T2636","span":{"begin":614,"end":618},"obj":"UMLS/C1527094"},{"id":"T2637","span":{"begin":795,"end":798},"obj":"UMLS/C0146403"},{"id":"T2638","span":{"begin":826,"end":839},"obj":"UMLS/C0037775"},{"id":"T2639","span":{"begin":32,"end":43},"obj":"UMLS/C1704770"},{"id":"T2640","span":{"begin":65,"end":76},"obj":"UMLS/C1704770"},{"id":"T2641","span":{"begin":720,"end":731},"obj":"UMLS/C1704770"},{"id":"T2642","span":{"begin":32,"end":43},"obj":"UMLS/C1704771"},{"id":"T2643","span":{"begin":65,"end":76},"obj":"UMLS/C1704771"},{"id":"T2644","span":{"begin":720,"end":731},"obj":"UMLS/C1704771"},{"id":"T2645","span":{"begin":547,"end":551},"obj":"UMLS/C1550462"},{"id":"T2646","span":{"begin":547,"end":551},"obj":"UMLS/C1551023"},{"id":"T2647","span":{"begin":739,"end":747},"obj":"UMLS/C1706701"},{"id":"T2648","span":{"begin":547,"end":551},"obj":"UMLS/C1610541"},{"id":"T2649","span":{"begin":795,"end":798},"obj":"UMLS/C0552399"},{"id":"T2650","span":{"begin":4,"end":14},"obj":"UMLS/C0017431"},{"id":"T2651","span":{"begin":280,"end":289},"obj":"UMLS/C0017431"},{"id":"T2652","span":{"begin":323,"end":332},"obj":"UMLS/C0017431"},{"id":"T2653","span":{"begin":515,"end":523},"obj":"UMLS/C0017431"},{"id":"T2654","span":{"begin":624,"end":633},"obj":"UMLS/C0017431"},{"id":"T2655","span":{"begin":804,"end":813},"obj":"UMLS/C0017431"},{"id":"T2656","span":{"begin":795,"end":798},"obj":"UMLS/C0006012"},{"id":"T2657","span":{"begin":524,"end":532},"obj":"UMLS/C1551362"},{"id":"T2658","span":{"begin":398,"end":404},"obj":"UMLS/C0005516"},{"id":"T2659","span":{"begin":848,"end":854},"obj":"UMLS/C0005516"},{"id":"T2660","span":{"begin":468,"end":476},"obj":"UMLS/C2587213"},{"id":"T2661","span":{"begin":153,"end":168},"obj":"UMLS/C0033413"},{"id":"T2662","span":{"begin":412,"end":427},"obj":"UMLS/C0033413"},{"id":"T2663","span":{"begin":44,"end":52},"obj":"UMLS/C0002778"},{"id":"T2664","span":{"begin":77,"end":85},"obj":"UMLS/C0002778"},{"id":"T2665","span":{"begin":772,"end":790},"obj":"UMLS/C0678951"},{"id":"T2666","span":{"begin":112,"end":116},"obj":"UMLS/C0323983"},{"id":"T2667","span":{"begin":660,"end":679},"obj":"UMLS/C1708064"},{"id":"T2668","span":{"begin":573,"end":581},"obj":"UMLS/C1550501"}],"attributes":[{"subj":"T2534","pred":"source","obj":"biosemtest"},{"subj":"T2535","pred":"source","obj":"biosemtest"},{"subj":"T2536","pred":"source","obj":"biosemtest"},{"subj":"T2537","pred":"source","obj":"biosemtest"},{"subj":"T2538","pred":"source","obj":"biosemtest"},{"subj":"T2539","pred":"source","obj":"biosemtest"},{"subj":"T2540","pred":"source","obj":"biosemtest"},{"subj":"T2541","pred":"source","obj":"biosemtest"},{"subj":"T2542","pred":"source","obj":"biosemtest"},{"subj":"T2543","pred":"source","obj":"biosemtest"},{"subj":"T2544","pred":"source","obj":"biosemtest"},{"subj":"T2545","pred":"source","obj":"biosemtest"},{"subj":"T2546","pred":"source","obj":"biosemtest"},{"subj":"T2547","pred":"source","obj":"biosemtest"},{"subj":"T2548","pred":"source","obj":"biosemtest"},{"subj":"T2549","pred":"source","obj":"biosemtest"},{"subj":"T2550","pred":"source","obj":"biosemtest"},{"subj":"T2551","pred":"source","obj":"biosemtest"},{"subj":"T2552","pred":"source","obj":"biosemtest"},{"subj":"T2553","pred":"source","obj":"biosemtest"},{"subj":"T2554","pred":"source","obj":"biosemtest"},{"subj":"T2555","pred":"source","obj":"biosemtest"},{"subj":"T2556","pred":"source","obj":"biosemtest"},{"subj":"T2557","pred":"source","obj":"biosemtest"},{"subj":"T2558","pred":"source","obj":"biosemtest"},{"subj":"T2559","pred":"source","obj":"biosemtest"},{"subj":"T2560","pred":"source","obj":"biosemtest"},{"subj":"T2561","pred":"source","obj":"biosemtest"},{"subj":"T2562","pred":"source","obj":"biosemtest"},{"subj":"T2563","pred":"source","obj":"biosemtest"},{"subj":"T2564","pred":"source","obj":"biosemtest"},{"subj":"T2565","pred":"source","obj":"biosemtest"},{"subj":"T2566","pred":"source","obj":"biosemtest"},{"subj":"T2567","pred":"source","obj":"biosemtest"},{"subj":"T2568","pred":"source","obj":"biosemtest"},{"subj":"T2569","pred":"source","obj":"biosemtest"},{"subj":"T2570","pred":"source","obj":"biosemtest"},{"subj":"T2571","pred":"source","obj":"biosemtest"},{"subj":"T2572","pred":"source","obj":"biosemtest"},{"subj":"T2573","pred":"source","obj":"biosemtest"},{"subj":"T2574","pred":"source","obj":"biosemtest"},{"subj":"T2575","pred":"source","obj":"biosemtest"},{"subj":"T2576","pred":"source","obj":"biosemtest"},{"subj":"T2577","pred":"source","obj":"biosemtest"},{"subj":"T2578","pred":"source","obj":"biosemtest"},{"subj":"T2579","pred":"source","obj":"biosemtest"},{"subj":"T2580","pred":"source","obj":"biosemtest"},{"subj":"T2581","pred":"source","obj":"biosemtest"},{"subj":"T2582","pred":"source","obj":"biosemtest"},{"subj":"T2583","pred":"source","obj":"biosemtest"},{"subj":"T2584","pred":"source","obj":"biosemtest"},{"subj":"T2585","pred":"source","obj":"biosemtest"},{"subj":"T2586","pred":"source","obj":"biosemtest"},{"subj":"T2587","pred":"source","obj":"biosemtest"},{"subj":"T2588","pred":"source","obj":"biosemtest"},{"subj":"T2589","pred":"source","obj":"biosemtest"},{"subj":"T2590","pred":"source","obj":"biosemtest"},{"subj":"T2591","pred":"source","obj":"biosemtest"},{"subj":"T2592","pred":"source","obj":"biosemtest"},{"subj":"T2593","pred":"source","obj":"biosemtest"},{"subj":"T2594","pred":"source","obj":"biosemtest"},{"subj":"T2595","pred":"source","obj":"biosemtest"},{"subj":"T2596","pred":"source","obj":"biosemtest"},{"subj":"T2597","pred":"source","obj":"biosemtest"},{"subj":"T2598","pred":"source","obj":"biosemtest"},{"subj":"T2599","pred":"source","obj":"biosemtest"},{"subj":"T2600","pred":"source","obj":"biosemtest"},{"subj":"T2601","pred":"source","obj":"biosemtest"},{"subj":"T2602","pred":"source","obj":"biosemtest"},{"subj":"T2603","pred":"source","obj":"biosemtest"},{"subj":"T2604","pred":"source","obj":"biosemtest"},{"subj":"T2605","pred":"source","obj":"biosemtest"},{"subj":"T2606","pred":"source","obj":"biosemtest"},{"subj":"T2607","pred":"source","obj":"biosemtest"},{"subj":"T2608","pred":"source","obj":"biosemtest"},{"subj":"T2609","pred":"source","obj":"biosemtest"},{"subj":"T2610","pred":"source","obj":"biosemtest"},{"subj":"T2611","pred":"source","obj":"biosemtest"},{"subj":"T2612","pred":"source","obj":"biosemtest"},{"subj":"T2613","pred":"source","obj":"biosemtest"},{"subj":"T2614","pred":"source","obj":"biosemtest"},{"subj":"T2615","pred":"source","obj":"biosemtest"},{"subj":"T2616","pred":"source","obj":"biosemtest"},{"subj":"T2617","pred":"source","obj":"biosemtest"},{"subj":"T2618","pred":"source","obj":"biosemtest"},{"subj":"T2619","pred":"source","obj":"biosemtest"},{"subj":"T2620","pred":"source","obj":"biosemtest"},{"subj":"T2621","pred":"source","obj":"biosemtest"},{"subj":"T2622","pred":"source","obj":"biosemtest"},{"subj":"T2623","pred":"source","obj":"biosemtest"},{"subj":"T2624","pred":"source","obj":"biosemtest"},{"subj":"T2625","pred":"source","obj":"biosemtest"},{"subj":"T2626","pred":"source","obj":"biosemtest"},{"subj":"T2627","pred":"source","obj":"biosemtest"},{"subj":"T2628","pred":"source","obj":"biosemtest"},{"subj":"T2629","pred":"source","obj":"biosemtest"},{"subj":"T2630","pred":"source","obj":"biosemtest"},{"subj":"T2631","pred":"source","obj":"biosemtest"},{"subj":"T2632","pred":"source","obj":"biosemtest"},{"subj":"T2633","pred":"source","obj":"biosemtest"},{"subj":"T2634","pred":"source","obj":"biosemtest"},{"subj":"T2635","pred":"source","obj":"biosemtest"},{"subj":"T2636","pred":"source","obj":"biosemtest"},{"subj":"T2637","pred":"source","obj":"biosemtest"},{"subj":"T2638","pred":"source","obj":"biosemtest"},{"subj":"T2639","pred":"source","obj":"biosemtest"},{"subj":"T2640","pred":"source","obj":"biosemtest"},{"subj":"T2641","pred":"source","obj":"biosemtest"},{"subj":"T2642","pred":"source","obj":"biosemtest"},{"subj":"T2643","pred":"source","obj":"biosemtest"},{"subj":"T2644","pred":"source","obj":"biosemtest"},{"subj":"T2645","pred":"source","obj":"biosemtest"},{"subj":"T2646","pred":"source","obj":"biosemtest"},{"subj":"T2647","pred":"source","obj":"biosemtest"},{"subj":"T2648","pred":"source","obj":"biosemtest"},{"subj":"T2649","pred":"source","obj":"biosemtest"},{"subj":"T2650","pred":"source","obj":"biosemtest"},{"subj":"T2651","pred":"source","obj":"biosemtest"},{"subj":"T2652","pred":"source","obj":"biosemtest"},{"subj":"T2653","pred":"source","obj":"biosemtest"},{"subj":"T2654","pred":"source","obj":"biosemtest"},{"subj":"T2655","pred":"source","obj":"biosemtest"},{"subj":"T2656","pred":"source","obj":"biosemtest"},{"subj":"T2657","pred":"source","obj":"biosemtest"},{"subj":"T2658","pred":"source","obj":"biosemtest"},{"subj":"T2659","pred":"source","obj":"biosemtest"},{"subj":"T2660","pred":"source","obj":"biosemtest"},{"subj":"T2661","pred":"source","obj":"biosemtest"},{"subj":"T2662","pred":"source","obj":"biosemtest"},{"subj":"T2663","pred":"source","obj":"biosemtest"},{"subj":"T2664","pred":"source","obj":"biosemtest"},{"subj":"T2665","pred":"source","obj":"biosemtest"},{"subj":"T2666","pred":"source","obj":"biosemtest"},{"subj":"T2667","pred":"source","obj":"biosemtest"},{"subj":"T2668","pred":"source","obj":"biosemtest"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"biosemtest","color":"#bdec93","default":true}]}]}}