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PMC:1064895 / 4060-4336 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T2212 203-229 Protein denotes leukemia inhibitory factor
T2211 194-198 Protein denotes IL-6
T2210 180-190 Gene_expression denotes production
T2209 165-175 Positive_regulation denotes stimulates
T2208 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T2207 48-53 Protein denotes RANKL
T2206 35-44 Positive_regulation denotes induction
T2173 203-229 Protein denotes leukemia inhibitory factor
T2172 194-198 Protein denotes IL-6
T2171 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T2170 48-53 Protein denotes RANKL
R1098 T2207 T2206 themeOf RANKL,induction
R1099 T2208 T2207 equivalentTo receptor activator of nuclear factor κB [NF-κB] ligand,RANKL
R1100 T2210 T2209 themeOf production,stimulates
R1101 T2211 T2210 themeOf IL-6,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3730 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T3729 48-53 Protein denotes RANKL
T3752 165-175 Positive_regulation denotes stimulates
T3751 180-190 Gene_expression denotes production
T3750 121-129 Regulation denotes involved
T3748 35-44 Positive_regulation denotes induction
T3732 203-229 Protein denotes leukemia inhibitory factor
T3731 194-198 Protein denotes IL-6
R1783 T3729 T3748 themeOf RANKL,induction
R1784 T3731 T3751 themeOf IL-6,production
R1788 T3732 T3751 themeOf leukemia inhibitory factor,production
R1812 T3748 T3750 themeOf induction,involved
R1817 T3751 T3752 themeOf production,stimulates
R1818 T3751 T3752 themeOf production,stimulates

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4640 180-190 Gene_expression denotes production
T4639 165-175 Positive_regulation denotes stimulates
T4638 35-44 Positive_regulation denotes induction
T4621 203-229 Protein denotes leukemia inhibitory factor
T4620 194-198 Protein denotes IL-6
T4619 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T4618 48-53 Protein denotes RANKL
R2466 T4618 T4638 themeOf RANKL,induction
R2468 T4620 T4640 themeOf IL-6,production
R2469 T4621 T4640 themeOf leukemia inhibitory factor,production
R2479 T4640 T4639 themeOf production,stimulates
R2480 T4640 T4639 themeOf production,stimulates

2_test

Id Subject Object Predicate Lexical cue
15642134-12594294-4202014 153-154 12594294 denotes 7

biosemtest

Id Subject Object Predicate Lexical cue
T2740 39-48 UMLS/C1621983 denotes ction of
T2712 186-196 UMLS/C1548180 denotes tion of IL
T2652 52-57 UMLS/C1704863 denotes L (re
T2644 39-48 UMLS/C0205263 denotes ction of
T2618 109-115 UMLS/C1749457 denotes ), whi
T2616 209-235 UP/P09056 denotes ia inhibitory factor by sy
T2614 209-235 UP/P15018 denotes ia inhibitory factor by sy
T2610 144-151 UMLS/C1959609 denotes n in RA
T2598 81-88 UMLS/C0521447 denotes ear fac
T2572 139-143 UMLS/C0443157 denotes rosi
T2571 209-235 UP/P17777 denotes ia inhibitory factor by sy
T2569 209-235 UMLS/C1761537 denotes ia inhibitory factor by sy
T2484 200-204 UMLS/C1149241 denotes nd l
T2469 260-276 UMLS/C0012472 denotes glandin E2 and n
T2446 155-160 UMLS/C0072944 denotes . It
T2441 200-204 UMLS/C1527132 denotes nd l
T2430 171-181 UMLS/C1948023 denotes ates the p
T2421 16-31 UMLS/C0005974 denotes resorption by
T2401 200-204 UMLS/C0021760 denotes nd l
T2396 52-57 UMLS/C1367028 denotes L (re
T2385 200-204 UMLS/C1334122 denotes nd l
T2369 127-135 UMLS/C1314939 denotes ed in bo
T2341 144-151 UMLS/C0333307 denotes n in RA
T2336 239-251 UMLS/C0224522 denotes ocytes, and
T2318 209-235 UMLS/C0125606 denotes ia inhibitory factor by sy
T2314 127-135 UMLS/C1947935 denotes ed in bo
T2313 209-235 UP/Q27956 denotes ia inhibitory factor by sy
T2305 109-115 UMLS/C0023688 denotes ), whi
T2296 209-235 UP/O62728 denotes ia inhibitory factor by sy
T2506 144-151 UMLS/C1880549 denotes n in RA
T2263 52-57 UMLS/C0666364 denotes L (re
T2251 59-67 UMLS/C0597357 denotes ptor act

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3240 271-274 CC denotes and
T3239 268-270 NN denotes E2
T3238 254-267 NN denotes prostaglandin
T3237 251-253 IN denotes of
T3236 247-250 CC denotes and
T3235 245-246 -COMMA- denotes ,
T3234 233-245 NN denotes synoviocytes
T3233 230-232 IN denotes by
T3232 223-229 NN denotes factor
T3231 212-222 JJ denotes inhibitory
T3230 203-211 NN denotes leukemia
T3229 199-202 CC denotes and
T3228 194-198 NN denotes IL-6
T3227 191-193 IN denotes of
T3226 180-190 NN denotes production
T3225 176-179 DT denotes the
T3224 165-175 VB denotes stimulates
T3223 160-164 RB denotes also
T3222 157-159 PRP denotes It
T3221 154-155 -RRB- denotes ]
T3220 153-154 CD denotes 7
T3219 152-153 -LRB- denotes [
T3218 149-151 NN denotes RA
T3217 146-148 IN denotes in
T3216 138-145 NN denotes erosion
T3215 133-137 JJ denotes bony
T3214 130-132 IN denotes in
T3213 121-129 VB denotes involved
T3212 118-120 VB denotes is
T3211 112-117 WDT denotes which
T3210 110-111 -COMMA- denotes ,
T3209 109-110 -RRB- denotes )
T3208 103-109 NN denotes ligand
T3207 101-102 -RRB- denotes ]
T3206 96-101 NN denotes NF-κB
T3205 95-96 -LRB- denotes [
T3204 92-94 NN denotes κB
T3203 85-91 NN denotes factor
T3202 77-84 JJ denotes nuclear
T3201 74-76 IN denotes of
T3200 64-73 NN denotes activator
T3199 55-63 NN denotes receptor
T3198 54-55 -LRB- denotes (
T3197 48-53 NN denotes RANKL
T3196 45-47 IN denotes of
T3195 35-44 NN denotes induction
T3194 31-34 DT denotes the
T3193 28-30 IN denotes by
T3192 17-27 NN denotes resorption
T3191 12-16 NN denotes bone
R1458 T3192 T3191 arg1Of resorption,bone
R1459 T3195 T3193 arg2Of induction,by
R1460 T3195 T3194 arg1Of induction,the
R1461 T3195 T3196 arg1Of induction,of
R1462 T3195 T3198 arg1Of induction,(
R1463 T3195 T3210 arg1Of induction,","
R1464 T3195 T3211 arg1Of induction,which
R1465 T3195 T3212 arg1Of induction,is
R1466 T3195 T3213 arg2Of induction,involved
R1467 T3197 T3196 arg2Of RANKL,of
R1468 T3200 T3198 arg2Of activator,(
R1469 T3200 T3199 arg1Of activator,receptor
R1470 T3200 T3201 arg1Of activator,of
R1471 T3206 T3205 arg2Of NF-κB,[
R1472 T3207 T3205 arg3Of ],[
R1473 T3208 T3201 arg2Of ligand,of
R1474 T3208 T3202 arg1Of ligand,nuclear
R1475 T3208 T3203 arg1Of ligand,factor
R1476 T3208 T3204 arg1Of ligand,κB
R1477 T3208 T3205 arg1Of ligand,[
R1478 T3209 T3198 arg3Of ),(
R1479 T3213 T3212 arg2Of involved,is
R1480 T3213 T3214 arg1Of involved,in
R1481 T3216 T3214 arg2Of erosion,in
R1482 T3216 T3215 arg1Of erosion,bony
R1483 T3216 T3217 arg1Of erosion,in
R1484 T3218 T3217 arg2Of RA,in
R1485 T3218 T3219 arg1Of RA,[
R1486 T3220 T3219 arg2Of 7,[
R1487 T3221 T3219 arg3Of ],[
R1488 T3222 T3224 arg1Of It,stimulates
R1491 T3226 T3224 arg2Of production,stimulates
R1492 T3226 T3225 arg1Of production,the
R1493 T3226 T3227 arg1Of production,of
R1494 T3226 T3237 arg1Of production,of
R1495 T3227 T3236 arg1Of of,and
R1496 T3228 T3229 arg1Of IL-6,and
R1497 T3229 T3227 arg2Of and,of
R1498 T3229 T3233 arg1Of and,by
R1499 T3232 T3229 arg2Of factor,and
R1500 T3232 T3230 arg1Of factor,leukemia
R1501 T3232 T3231 arg1Of factor,inhibitory
R1502 T3234 T3233 arg2Of synoviocytes,by
R1503 T3236 T3235 arg1Of and,","
R1504 T3237 T3236 arg2Of of,and
R1505 T3239 T3238 arg1Of E2,prostaglandin
R1506 T3239 T3240 arg1Of E2,and
R1507 T3240 T3237 arg2Of and,of

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T3478 157-159 Anaphor denotes It

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3501 203-229 Protein denotes leukemia inhibitory factor
T3500 194-198 Protein denotes IL-6
T3499 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T3498 48-53 Protein denotes RANKL

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3695 194-198 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-BP

Id Subject Object Predicate Lexical cue
T2777 268-270 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T2776 180-198 http://purl.obolibrary.org/obo/GO_0032675 denotes production of IL-6
T2775 180-198 http://purl.obolibrary.org/obo/GO_0032635 denotes production of IL-6
T2774 12-27 http://purl.obolibrary.org/obo/GO_0045453 denotes bone resorption
T2788 268-270 http://purl.obolibrary.org/obo/GO_0061658 denotes E2
T2787 268-270 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T2786 268-270 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T2785 268-270 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T2784 268-270 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T2783 268-270 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T2782 268-270 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T2781 268-270 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T2780 268-270 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T2779 268-270 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T2778 268-270 http://purl.obolibrary.org/obo/GO_0019787 denotes E2

GO-MF

Id Subject Object Predicate Lexical cue
T3549 268-270 http://purl.obolibrary.org/obo/GO_0061658 denotes E2
T3548 268-270 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T3547 268-270 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T3546 268-270 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T3545 268-270 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T3544 268-270 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T3543 268-270 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T3542 268-270 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T3541 268-270 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T3540 268-270 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T3539 268-270 http://purl.obolibrary.org/obo/GO_0019787 denotes E2
T3538 268-270 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T3537 103-109 http://purl.obolibrary.org/obo/GO_0005488 denotes ligand
T3522 194-198 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

simple1

Id Subject Object Predicate Lexical cue
T3672 203-229 Protein denotes leukemia inhibitory factor
T3671 194-198 Protein denotes IL-6
T3670 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T3669 48-53 Protein denotes RANKL

DLUT931

Id Subject Object Predicate Lexical cue
T3802 165-175 Positive_regulation denotes stimulates
T3801 180-190 Gene_expression denotes production
T3799 121-129 Regulation denotes involved
T3798 35-44 Positive_regulation denotes induction
T3781 203-229 Protein denotes leukemia inhibitory factor
T3780 194-198 Protein denotes IL-6
T3779 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T3778 48-53 Protein denotes RANKL
R1806 T3798 T3799 themeOf induction,involved
R1809 T3801 T3802 themeOf production,stimulates
R1810 T3801 T3802 themeOf production,stimulates
R1791 T3778 T3798 themeOf RANKL,induction
R1793 T3780 T3801 themeOf IL-6,production
R1794 T3781 T3801 themeOf leukemia inhibitory factor,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4596 31-111 Gene_expression denotes the induction of RANKL (receptor activator of nuclear factor κB [NF-κB] ligand),
T4595 31-111 Positive_regulation denotes the induction of RANKL (receptor activator of nuclear factor κB [NF-κB] ligand),
T4580 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T4568 254-270 Entity denotes prostaglandin E2
T4565 203-229 Protein denotes leukemia inhibitory factor
T4561 194-198 Protein denotes IL-6
T4530 149-155 Protein denotes RA [7]
T4524 45-53 Protein denotes of RANKL
T4520 233-246 Entity denotes synoviocytes,
T4519 254-267 Entity denotes prostaglandin
R2451 T4524 T4595 themeOf of RANKL,"the induction of RANKL (receptor activator of nuclear factor κB [NF-κB] ligand),"
R2454 T4524 T4596 themeOf of RANKL,"the induction of RANKL (receptor activator of nuclear factor κB [NF-κB] ligand),"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4164 35-44 NN denotes induction
T4163 31-34 DT denotes the
T4162 28-30 IN denotes by
T4161 17-27 NN denotes resorption
T4160 12-16 NN denotes bone
T4210 271-274 CC denotes and
T4209 268-270 CD denotes E2
T4208 254-267 NN denotes prostaglandin
T4207 251-253 IN denotes of
T4206 247-250 CC denotes and
T4205 245-246 , denotes ,
T4204 233-245 NNS denotes synoviocytes
T4203 230-232 IN denotes by
T4202 223-229 NN denotes factor
T4201 212-222 JJ denotes inhibitory
T4200 203-211 NN denotes leukemia
T4199 199-202 CC denotes and
T4198 194-198 NN denotes IL-6
T4197 191-193 IN denotes of
T4196 180-190 NN denotes production
T4195 176-179 DT denotes the
T4194 165-175 VBZ denotes stimulates
T4193 160-164 RB denotes also
T4192 157-159 PRP denotes It
T4191 155-156 . denotes .
T4190 154-155 NNP denotes ]
T4189 153-154 CD denotes 7
T4188 152-153 NNP denotes [
T4187 149-151 NNP denotes RA
T4186 146-148 IN denotes in
T4185 138-145 NN denotes erosion
T4184 133-137 NN denotes bony
T4183 130-132 IN denotes in
T4182 121-129 VBN denotes involved
T4181 118-120 VBZ denotes is
T4180 112-117 WDT denotes which
T4179 110-111 , denotes ,
T4178 109-110 -RRB- denotes )
T4177 103-109 NN denotes ligand
T4176 101-102 NNP denotes ]
T4175 96-101 NNP denotes NF-κB
T4174 95-96 NNP denotes [
T4173 92-94 NNP denotes κB
T4172 85-91 NN denotes factor
T4171 77-84 JJ denotes nuclear
T4170 74-76 IN denotes of
T4169 64-73 NN denotes activator
T4168 55-63 NN denotes receptor
T4167 54-55 -LRB- denotes (
T4166 48-53 NNP denotes RANKL
T4165 45-47 IN denotes of
R2146 T4160 T4161 compound bone,resorption
R2150 T4163 T4164 det the,induction
R2151 T4164 T4162 pobj induction,by
R2152 T4165 T4164 prep of,induction
R2154 T4166 T4165 pobj RANKL,of
R2155 T4167 T4169 punct (,activator
R2156 T4168 T4169 compound receptor,activator
R2158 T4169 T4166 appos activator,RANKL
R2159 T4170 T4169 prep of,activator
R2160 T4171 T4172 amod nuclear,factor
R2162 T4172 T4170 pobj factor,of
R2163 T4173 T4177 compound κB,ligand
R2164 T4174 T4177 compound [,ligand
R2166 T4175 T4177 compound NF-κB,ligand
R2167 T4176 T4177 compound ],ligand
R2168 T4177 T4172 appos ligand,factor
R2170 T4178 T4177 punct ),ligand
R2171 T4179 T4172 punct ",",factor
R2172 T4180 T4182 nsubjpass which,involved
R2174 T4181 T4182 auxpass is,involved
R2175 T4182 T4172 relcl involved,factor
R2176 T4183 T4182 prep in,involved
R2178 T4184 T4185 amod bony,erosion
R2179 T4185 T4183 pobj erosion,in
R2181 T4186 T4185 prep in,erosion
R2182 T4187 T4188 compound RA,[
R2183 T4188 T4186 pobj [,in
R2184 T4189 T4190 nummod 7,]
R2185 T4190 T4166 conj ],RANKL
R2188 T4192 T4194 nsubj It,stimulates
R2189 T4193 T4194 advmod also,stimulates
R2190 T4194 T4194 ROOT stimulates,stimulates
R2191 T4195 T4196 det the,production
R2193 T4196 T4194 dobj production,stimulates
R2194 T4197 T4196 prep of,production
R2195 T4198 T4197 pobj IL-6,of
R2197 T4199 T4198 cc and,IL-6
R2198 T4200 T4202 nmod leukemia,factor
R2199 T4201 T4202 amod inhibitory,factor
R2201 T4202 T4196 conj factor,production
R2203 T4203 T4196 prep by,production
R2205 T4204 T4203 pobj synoviocytes,by
R2206 T4205 T4194 punct ",",stimulates
R2208 T4206 T4194 cc and,stimulates
R2209 T4207 T4194 conj of,stimulates
R2210 T4208 T4207 pobj prostaglandin,of
R2212 T4209 T4208 nummod E2,prostaglandin
R2213 T4210 T4208 cc and,prostaglandin

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3635 165-175 Positive_regulation denotes stimulates
T3634 180-190 Gene_expression denotes production
T3633 194-198 Protein denotes IL-6
T3632 77-94 Protein denotes nuclear factor κB
R1769 T3633 T3634 themeOf IL-6,production
R1770 T3634 T3635 themeOf production,stimulates

testone

Id Subject Object Predicate Lexical cue
T2144 180-190 Gene_expression denotes production
T2143 165-175 Positive_regulation denotes stimulates
T2142 35-44 Positive_regulation denotes induction
T2126 203-229 Protein denotes leukemia inhibitory factor
T2125 194-198 Protein denotes IL-6
T2124 55-109 Protein denotes receptor activator of nuclear factor κB [NF-κB] ligand
T2123 48-53 Protein denotes RANKL
R1074 T2123 T2142 themeOf RANKL,induction
R1075 T2124 T2142 themeOf receptor activator of nuclear factor κB [NF-κB] ligand,induction
R1076 T2124 T2123 equivalentTo receptor activator of nuclear factor κB [NF-κB] ligand,RANKL
R1077 T2125 T2144 themeOf IL-6,production
R1078 T2126 T2144 themeOf leukemia inhibitory factor,production
R1086 T2144 T2143 themeOf production,stimulates