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PMC:1064895 / 3113-3368 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T2196 212-217 Protein denotes TNF-α
T2195 202-207 Protein denotes IL-18
T2194 195-200 Protein denotes IL-15
T2193 189-193 Protein denotes IL-6
T2192 183-187 Protein denotes IL-1
T2191 95-107 Protein denotes interferon-γ
T2190 86-90 Protein denotes IL-2
T2162 212-217 Protein denotes TNF-α
T2161 202-207 Protein denotes IL-18
T2160 195-200 Protein denotes IL-15
T2159 189-193 Protein denotes IL-6
T2158 183-187 Protein denotes IL-1
T2157 95-107 Protein denotes interferon-γ
T2156 86-90 Protein denotes IL-2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3721 212-217 Protein denotes TNF-α
T3720 202-207 Protein denotes IL-18
T3719 195-200 Protein denotes IL-15
T3718 189-193 Protein denotes IL-6
T3717 183-187 Protein denotes IL-1
T3716 95-107 Protein denotes interferon-γ
T3715 86-90 Protein denotes IL-2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4610 212-217 Protein denotes TNF-α
T4609 202-207 Protein denotes IL-18
T4608 195-200 Protein denotes IL-15
T4607 189-193 Protein denotes IL-6
T4606 183-187 Protein denotes IL-1
T4605 95-107 Protein denotes interferon-γ
T4604 86-90 Protein denotes IL-2

biosemtest

Id Subject Object Predicate Lexical cue
T2745 154-164 UMLS/C0016030 denotes broblast c
T2737 61-68 UMLS/C2348040 denotes erived
T2735 117-123 UMLS/C0444497 denotes ints o
T2726 12-18 UMLS/C2348044 denotes eries
T2720 22-29 UMLS/C1705923 denotes tudies
T2687 175-184 UMLS/C0332257 denotes cluding I
T2683 61-68 UMLS/C1441547 denotes erived
T2677 139-149 UMLS/C0024432 denotes crophage a
T2648 154-164 UMLS/C1546634 denotes broblast c
T2645 175-184 UMLS/C2700399 denotes cluding I
T2594 117-123 UMLS/C1706309 denotes ints o
T2588 139-149 UMLS/C1550652 denotes crophage a
T2583 175-184 UMLS/C1552866 denotes cluding I
T2576 154-164 UMLS/C1550637 denotes broblast c
T2562 87-91 UMLS/C1522405 denotes L-2
T2551 22-29 UMLS/C0557651 denotes tudies
T2538 54-60 UMLS/C0039194 denotes cell-
T2485 197-202 UMLS/C0254610 denotes -15,
T2482 191-195 UMLS/C1149241 denotes -6,
T2471 87-91 UMLS/C0879590 denotes L-2
T2468 61-68 UMLS/C1711343 denotes erived
T2454 22-29 UMLS/C0008972 denotes tudies
T2449 22-29 UMLS/C0008976 denotes tudies
T2443 197-202 UMLS/C1334105 denotes -15,
T2439 191-195 UMLS/C1527132 denotes -6,
T2436 204-209 UMLS/C1334109 denotes -18 a
T2434 139-149 UMLS/C1546706 denotes crophage a
T2432 12-18 UMLS/C0205549 denotes eries
T2431 204-209 UMLS/C1527127 denotes -18 a
T2422 22-29 UMLS/C2603343 denotes tudies
T2414 165-174 UMLS/C1524094 denotes tokines i
T2413 69-78 UMLS/C1524094 denotes ytokines
T2407 22-29 UMLS/C2349977 denotes tudies
T2399 191-195 UMLS/C0021760 denotes -6,
T2383 191-195 UMLS/C1334122 denotes -6,
T2379 185-189 UMLS/C0021755 denotes -1,
T2377 185-189 UMLS/C0021753 denotes -1,
T2376 87-91 UMLS/C0021756 denotes L-2
T2331 117-123 UMLS/C0392905 denotes ints o
T2327 117-123 UMLS/C1269611 denotes ints o
T2301 22-29 UMLS/C1880229 denotes tudies
T2293 204-209 UMLS/C0383327 denotes -18 a
T2513 185-189 UMLS/C1522428 denotes -1,
T2510 117-123 UMLS/C0022417 denotes ints o
T2502 185-189 UMLS/C1149212 denotes -1,
T2497 197-202 UMLS/C1149222 denotes -15,
T2491 204-209 UMLS/C1149225 denotes -18 a
T2490 87-91 UMLS/C1149229 denotes L-2
T2269 226-234 UMLS/C2346714 denotes ndant in
T2255 22-29 UMLS/C0947630 denotes tudies
T2244 165-174 UMLS/C0079189 denotes tokines i
T2243 69-78 UMLS/C0079189 denotes ytokines

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3055 246-254 NN denotes synovium
T3054 235-245 JJ denotes rheumatoid
T3053 232-234 IN denotes in
T3052 223-231 JJ denotes abundant
T3051 218-222 VB denotes were
T3050 212-217 NN denotes TNF-α
T3049 208-211 CC denotes and
T3048 202-207 NN denotes IL-18
T3047 200-201 -COMMA- denotes ,
T3046 195-200 NN denotes IL-15
T3045 193-194 -COMMA- denotes ,
T3044 189-193 NN denotes IL-6
T3043 187-188 -COMMA- denotes ,
T3022 53-54 NN denotes T
T3021 50-52 IN denotes of
T3020 42-49 NN denotes paucity
T3019 29-41 VB denotes demonstrated
T3018 21-28 NN denotes studies
T3017 18-20 IN denotes of
T3016 11-17 NN denotes series
T3015 9-10 DT denotes a
T3014 7-8 -COMMA- denotes ,
T3013 0-7 RB denotes However
T3042 183-187 NN denotes IL-1
T3041 173-182 VB denotes including
T3040 163-172 NN denotes cytokines
T3039 152-162 NN denotes fibroblast
T3038 148-151 CC denotes and
T3037 137-147 NN denotes macrophage
T3036 129-136 IN denotes whereas
T3035 127-128 -COMMA- denotes ,
T3034 125-127 NN denotes RA
T3033 122-124 IN denotes of
T3032 115-121 NN denotes joints
T3031 111-114 DT denotes the
T3030 108-110 IN denotes in
T3029 95-107 NN denotes interferon-γ
T3028 91-94 CC denotes and
T3027 86-90 NN denotes IL-2
T3026 83-85 IN denotes as
T3025 78-82 JJ denotes such
T3024 68-77 NN denotes cytokines
T3023 55-67 JJ denotes cell-derived
R1273 T3016 T3015 arg1Of series,a
R1274 T3016 T3017 arg1Of series,of
R1275 T3016 T3019 arg1Of series,demonstrated
R1276 T3018 T3017 arg2Of studies,of
R1277 T3019 T3013 arg1Of demonstrated,However
R1278 T3019 T3014 arg1Of demonstrated,","
R1279 T3019 T3035 arg1Of demonstrated,","
R1280 T3019 T3036 arg1Of demonstrated,whereas
R1281 T3020 T3019 arg2Of paucity,demonstrated
R1282 T3020 T3021 arg1Of paucity,of
R1283 T3024 T3021 arg2Of cytokines,of
R1284 T3024 T3022 arg1Of cytokines,T
R1285 T3024 T3023 arg1Of cytokines,cell-derived
R1286 T3024 T3026 arg1Of cytokines,as
R1287 T3026 T3025 arg1Of as,such
R1288 T3027 T3028 arg1Of IL-2,and
R1289 T3028 T3026 arg2Of and,as
R1290 T3028 T3030 arg1Of and,in
R1291 T3029 T3028 arg2Of interferon-γ,and
R1292 T3032 T3030 arg2Of joints,in
R1293 T3032 T3031 arg1Of joints,the
R1294 T3032 T3033 arg1Of joints,of
R1295 T3034 T3033 arg2Of RA,of
R1296 T3037 T3038 arg1Of macrophage,and
R1297 T3039 T3038 arg2Of fibroblast,and
R1298 T3040 T3037 arg1Of cytokines,macrophage
R1299 T3040 T3039 arg1Of cytokines,fibroblast
R1300 T3040 T3041 arg1Of cytokines,including
R1301 T3040 T3051 arg1Of cytokines,were
R1302 T3040 T3052 arg1Of cytokines,abundant
R1303 T3042 T3043 arg1Of IL-1,","
R1304 T3043 T3045 arg1Of ",",","
R1305 T3044 T3043 arg2Of IL-6,","
R1306 T3045 T3047 arg1Of ",",","
R1307 T3046 T3045 arg2Of IL-15,","
R1308 T3047 T3049 arg1Of ",",and
R1309 T3048 T3047 arg2Of IL-18,","
R1310 T3049 T3041 arg2Of and,including
R1311 T3050 T3049 arg2Of TNF-α,and
R1312 T3051 T3036 arg2Of were,whereas
R1313 T3051 T3053 arg1Of were,in
R1314 T3052 T3051 arg2Of abundant,were
R1315 T3055 T3053 arg2Of synovium,in
R1316 T3055 T3054 arg1Of synovium,rheumatoid

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T3466 86-90 Antecedent denotes IL-2
T3465 53-77 Anaphor denotes T cell-derived cytokines
T3472 212-217 Antecedent denotes TNF-α
T3471 202-207 Antecedent denotes IL-18
T3470 189-193 Antecedent denotes IL-6
T3469 183-187 Antecedent denotes IL-1
T3468 137-172 Anaphor denotes macrophage and fibroblast cytokines
T3467 95-107 Antecedent denotes interferon-γ
R1731 T3465 T3466 boundBy T cell-derived cytokines,IL-2
R1732 T3465 T3467 boundBy T cell-derived cytokines,interferon-γ
R1736 T3468 T3469 boundBy macrophage and fibroblast cytokines,IL-1
R1737 T3468 T3470 boundBy macrophage and fibroblast cytokines,IL-6
R1738 T3468 T3471 boundBy macrophage and fibroblast cytokines,IL-18
R1739 T3468 T3472 boundBy macrophage and fibroblast cytokines,TNF-α

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3484 86-90 Protein denotes IL-2
T3490 212-217 Protein denotes TNF-α
T3489 202-207 Protein denotes IL-18
T3488 195-200 Protein denotes IL-15
T3487 189-193 Protein denotes IL-6
T3486 183-187 Protein denotes IL-1
T3485 95-107 Protein denotes interferon-γ

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3696 195-200 http://www.uniprot.org/uniprot/P40933 denotes IL-15
T3693 189-193 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T3692 95-107 http://www.uniprot.org/uniprot/P01579 denotes interferon-γ
T3691 86-90 http://www.uniprot.org/uniprot/P60568 denotes IL-2
T3689 212-217 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T3687 212-215 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-MF

Id Subject Object Predicate Lexical cue
T3525 202-207 http://purl.obolibrary.org/obo/GO_0045515 denotes IL-18
T3523 195-200 http://purl.obolibrary.org/obo/GO_0016170 denotes IL-15
T3520 189-193 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T3519 95-107 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon-γ
T3518 86-90 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2
T3516 183-187 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1

sentences

Id Subject Object Predicate Lexical cue
T2752 0-255 Sentence denotes However, a series of studies demonstrated paucity of T cell-derived cytokines such as IL-2 and interferon-γ in the joints of RA, whereas macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α were abundant in rheumatoid synovium.
T22 0-255 Sentence denotes However, a series of studies demonstrated paucity of T cell-derived cytokines such as IL-2 and interferon-γ in the joints of RA, whereas macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α were abundant in rheumatoid synovium.

simple1

Id Subject Object Predicate Lexical cue
T3661 212-217 Protein denotes TNF-α
T3660 202-207 Protein denotes IL-18
T3659 195-200 Protein denotes IL-15
T3658 189-193 Protein denotes IL-6
T3657 183-187 Protein denotes IL-1
T3656 95-107 Protein denotes interferon-γ
T3655 86-90 Protein denotes IL-2

DLUT931

Id Subject Object Predicate Lexical cue
T3770 212-217 Protein denotes TNF-α
T3769 202-207 Protein denotes IL-18
T3768 195-200 Protein denotes IL-15
T3767 189-193 Protein denotes IL-6
T3766 183-187 Protein denotes IL-1
T3765 95-107 Protein denotes interferon-γ
T3764 86-90 Protein denotes IL-2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4502 137-147 Entity denotes macrophage
T4501 212-217 Protein denotes TNF-α
T4499 95-128 Protein denotes interferon-γ in the joints of RA,
T4594 95-128 Localization denotes interferon-γ in the joints of RA,
T4593 137-218 Localization denotes macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α
T4591 53-85 Gene_expression denotes T cell-derived cytokines such as
T4573 202-207 Protein denotes IL-18
T4572 189-193 Protein denotes IL-6
T4571 183-187 Protein denotes IL-1
T4549 195-200 Protein denotes IL-15
T4546 53-90 Protein denotes T cell-derived cytokines such as IL-2
T4538 53-85 Protein denotes T cell-derived cytokines such as
T4536 122-127 Protein denotes of RA
T4534 152-162 Entity denotes fibroblast
T4533 137-217 Protein denotes macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α
T4531 53-67 Entity denotes T cell-derived
R2445 T4499 T4594 themeOf "interferon-γ in the joints of RA,","interferon-γ in the joints of RA,"
R2447 T4502 T4593 locationOf macrophage,"macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α "
R2457 T4533 T4593 themeOf "macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α","macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α "
R2460 T4534 T4593 locationOf fibroblast,"macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α "
R2461 T4538 T4591 themeOf T cell-derived cytokines such as,T cell-derived cytokines such as

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4020 254-255 . denotes .
T4019 246-254 NN denotes synovium
T4018 235-245 JJ denotes rheumatoid
T4017 232-234 IN denotes in
T4016 223-231 JJ denotes abundant
T4015 218-222 VBD denotes were
T4014 212-217 NNP denotes TNF-α
T4013 208-211 CC denotes and
T4012 202-207 NNP denotes IL-18
T4011 200-201 , denotes ,
T4010 195-200 NNP denotes IL-15
T4009 193-194 , denotes ,
T4008 189-193 NNP denotes IL-6
T4007 187-188 , denotes ,
T4006 183-187 NNP denotes IL-1
T4005 173-182 VBG denotes including
T4004 163-172 NNS denotes cytokines
T4003 152-162 NN denotes fibroblast
T4002 148-151 CC denotes and
T4001 137-147 NN denotes macrophage
T4000 129-136 IN denotes whereas
T3999 127-128 , denotes ,
T3998 125-127 NNP denotes RA
T3997 122-124 IN denotes of
T3996 115-121 NNS denotes joints
T3995 111-114 DT denotes the
T3994 108-110 IN denotes in
T3993 95-107 NN denotes interferon-γ
T3992 91-94 CC denotes and
T3991 86-90 NN denotes IL-2
T3990 83-85 IN denotes as
T3989 78-82 JJ denotes such
T3988 68-77 NNS denotes cytokines
T3987 55-67 JJ denotes cell-derived
T3986 53-54 NNP denotes T
T3985 50-52 IN denotes of
T3984 42-49 NN denotes paucity
T3983 29-41 VBD denotes demonstrated
T3982 21-28 NNS denotes studies
T3981 18-20 IN denotes of
T3980 11-17 NN denotes series
T3979 9-10 DT denotes a
T3978 7-8 , denotes ,
T3977 0-7 RB denotes However
R1892 T3977 T3983 advmod However,demonstrated
R1893 T3978 T3983 punct ",",demonstrated
R1895 T3979 T3980 det a,series
R1896 T3980 T3983 nsubj series,demonstrated
R1897 T3981 T3980 prep of,series
R1899 T3982 T3981 pobj studies,of
R1900 T3983 T3983 ROOT demonstrated,demonstrated
R1902 T3984 T3983 dobj paucity,demonstrated
R1903 T3985 T3984 prep of,paucity
R1904 T3986 T3988 nmod T,cytokines
R1906 T3987 T3988 amod cell-derived,cytokines
R1907 T3988 T3985 pobj cytokines,of
R1908 T3989 T3990 amod such,as
R1910 T3990 T3988 prep as,cytokines
R1911 T3991 T3990 pobj IL-2,as
R1912 T3992 T3991 cc and,IL-2
R1914 T3993 T3991 conj interferon-γ,IL-2
R1915 T3994 T3983 prep in,demonstrated
R1916 T3995 T3996 det the,joints
R1917 T3996 T3994 pobj joints,in
R1919 T3997 T3996 prep of,joints
R1920 T3998 T3997 pobj RA,of
R1921 T3999 T3983 punct ",",demonstrated
R1924 T4000 T4015 mark whereas,were
R1926 T4001 T4015 nsubj macrophage,were
R1927 T4002 T4001 cc and,macrophage
R1928 T4003 T4001 conj fibroblast,macrophage
R1930 T4004 T4001 conj cytokines,macrophage
R1931 T4005 T4004 prep including,cytokines
R1932 T4006 T4005 pobj IL-1,including
R1933 T4007 T4006 punct ",",IL-1
R1935 T4008 T4006 conj IL-6,IL-1
R1936 T4009 T4008 punct ",",IL-6
R1937 T4010 T4008 conj IL-15,IL-6
R1938 T4011 T4010 punct ",",IL-15
R1940 T4012 T4010 conj IL-18,IL-15
R1941 T4013 T4012 cc and,IL-18
R1943 T4014 T4012 conj TNF-α,IL-18
R1944 T4015 T3983 advcl were,demonstrated
R1945 T4016 T4015 acomp abundant,were
R1946 T4017 T4016 prep in,abundant
R1948 T4018 T4019 amod rheumatoid,synovium
R1949 T4019 T4017 pobj synovium,in
R1950 T4020 T3983 punct .,demonstrated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3618 223-231 Gene_expression denotes abundant
T3617 223-231 Gene_expression denotes abundant
T3616 223-231 Gene_expression denotes abundant
T3615 223-231 Gene_expression denotes abundant
T3614 223-231 Gene_expression denotes abundant
T3613 223-231 Gene_expression denotes abundant
T3612 235-254 Protein denotes rheumatoid synovium
T3611 212-217 Protein denotes TNF-α
T3610 202-207 Protein denotes IL-18
T3609 195-200 Protein denotes IL-15
T3608 189-193 Protein denotes IL-6
T3607 183-187 Protein denotes IL-1
T3606 95-107 Protein denotes interferon-γ
T3605 86-90 Protein denotes IL-2
R1754 T3607 T3613 themeOf IL-1,abundant
R1757 T3608 T3614 themeOf IL-6,abundant
R1758 T3609 T3615 themeOf IL-15,abundant
R1759 T3610 T3616 themeOf IL-18,abundant
R1760 T3611 T3617 themeOf TNF-α,abundant
R1761 T3612 T3618 themeOf rheumatoid synovium,abundant

testone

Id Subject Object Predicate Lexical cue
T2115 212-217 Protein denotes TNF-α
T2114 202-207 Protein denotes IL-18
T2113 195-200 Protein denotes IL-15
T2112 189-193 Protein denotes IL-6
T2111 183-187 Protein denotes IL-1
T2110 95-107 Protein denotes interferon-γ
T2109 86-90 Protein denotes IL-2