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PMC:1064895 / 2922-3699 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T2196 403-408 Protein denotes TNF-α
T2195 393-398 Protein denotes IL-18
T2194 386-391 Protein denotes IL-15
T2193 380-384 Protein denotes IL-6
T2192 374-378 Protein denotes IL-1
T2191 286-298 Protein denotes interferon-γ
T2190 277-281 Protein denotes IL-2
T2162 403-408 Protein denotes TNF-α
T2161 393-398 Protein denotes IL-18
T2160 386-391 Protein denotes IL-15
T2159 380-384 Protein denotes IL-6
T2158 374-378 Protein denotes IL-1
T2157 286-298 Protein denotes interferon-γ
T2156 277-281 Protein denotes IL-2

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T3721 403-408 Protein denotes TNF-α
T3720 393-398 Protein denotes IL-18
T3719 386-391 Protein denotes IL-15
T3718 380-384 Protein denotes IL-6
T3717 374-378 Protein denotes IL-1
T3716 286-298 Protein denotes interferon-γ
T3715 277-281 Protein denotes IL-2

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4610 403-408 Protein denotes TNF-α
T4609 393-398 Protein denotes IL-18
T4608 386-391 Protein denotes IL-15
T4607 380-384 Protein denotes IL-6
T4606 374-378 Protein denotes IL-1
T4605 286-298 Protein denotes interferon-γ
T4604 277-281 Protein denotes IL-2

2_test

Id Subject Object Predicate Lexical cue
15642134-9683554-4202010 522-523 9683554 denotes 3
15642134-10524679-4202011 709-710 10524679 denotes 4

biosemtest

Id Subject Object Predicate Lexical cue
T2745 345-355 UMLS/C0016030 denotes broblast c
T2737 252-259 UMLS/C2348040 denotes erived
T2736 450-454 UMLS/C0323983 denotes s pa
T2735 308-314 UMLS/C0444497 denotes ints o
T2726 203-209 UMLS/C2348044 denotes eries
T2724 141-148 UMLS/C1704243 denotes argest
T2720 213-220 UMLS/C1705923 denotes tudies
T2718 3-9 UMLS/C0700321 denotes ittle
T2700 596-603 UMLS/C0003320 denotes igen sp
T2687 366-375 UMLS/C0332257 denotes cluding I
T2683 252-259 UMLS/C1441547 denotes erived
T2681 75-93 UMLS/C0004364 denotes utoimmune disease
T2677 330-340 UMLS/C0024432 denotes crophage a
T2673 149-153 UMLS/C0007634 denotes ell
T2669 505-517 UMLS/C0543483 denotes hogenesis of
T2668 505-517 UMLS/C0699748 denotes hogenesis of
T2667 59-71 UMLS/C0699748 denotes athogenesis
T2666 59-71 UMLS/C0543483 denotes athogenesis
T2663 604-612 UMLS/C1552740 denotes cific T
T2662 3-9 UMLS/C2700395 denotes ittle
T2651 636-652 UMLS/C0009331 denotes e II collagen, a
T2650 141-148 UMLS/C0443228 denotes argest
T2648 345-355 UMLS/C1546634 denotes broblast c
T2645 366-375 UMLS/C2700399 denotes cluding I
T2628 736-741 UMLS/C0027552 denotes ds to
T2594 308-314 UMLS/C1706309 denotes ints o
T2588 330-340 UMLS/C1550652 denotes crophage a
T2586 154-164 UMLS/C1257890 denotes opulation
T2583 366-375 UMLS/C1552866 denotes cluding I
T2581 165-177 UMLS/C1549537 denotes nfiltrating
T2580 720-724 UMLS/C1704326 denotes e of
T2579 482-486 UMLS/C1704326 denotes e of
T2576 345-355 UMLS/C1550637 denotes broblast c
T2574 165-177 UMLS/C0332448 denotes nfiltrating
T2565 440-448 UMLS/C0039099 denotes ovium. T
T2564 182-190 UMLS/C0039099 denotes ynovium.
T2562 278-282 UMLS/C1522405 denotes L-2
T2551 213-220 UMLS/C0557651 denotes tudies
T2546 728-735 UMLS/C0039194 denotes ells ne
T2545 613-620 UMLS/C0039194 denotes ells, e
T2539 490-497 UMLS/C0039194 denotes ells in
T2538 245-251 UMLS/C0039194 denotes cell-
T2485 388-393 UMLS/C0254610 denotes -15,
T2482 382-386 UMLS/C1149241 denotes -6,
T2480 149-153 UMLS/C1136359 denotes ell
T2476 467-477 UMLS/C1522634 denotes stioned th
T2471 278-282 UMLS/C0879590 denotes L-2
T2468 252-259 UMLS/C1711343 denotes erived
T2467 149-153 UMLS/C1948049 denotes ell
T2459 570-578 UMLS/C1999177 denotes anced pr
T2454 213-220 UMLS/C0008972 denotes tudies
T2449 213-220 UMLS/C0008976 denotes tudies
T2443 388-393 UMLS/C1334105 denotes -15,
T2439 382-386 UMLS/C1527132 denotes -6,
T2436 395-400 UMLS/C1334109 denotes -18 a
T2434 330-340 UMLS/C1546706 denotes crophage a
T2432 203-209 UMLS/C0205549 denotes eries
T2431 395-400 UMLS/C1527127 denotes -18 a
T2422 213-220 UMLS/C2603343 denotes tudies
T2419 570-578 UMLS/C2349975 denotes anced pr
T2415 695-704 UMLS/C1524094 denotes okines in
T2414 356-365 UMLS/C1524094 denotes tokines i
T2413 260-269 UMLS/C1524094 denotes ytokines
T2407 213-220 UMLS/C2349977 denotes tudies
T2399 382-386 UMLS/C0021760 denotes -6,
T2398 165-177 UMLS/C1546677 denotes nfiltrating
T2383 382-386 UMLS/C1334122 denotes -6,
T2379 376-380 UMLS/C0021755 denotes -1,
T2377 376-380 UMLS/C0021753 denotes -1,
T2376 278-282 UMLS/C0021756 denotes L-2
T2359 149-153 UMLS/C1704653 denotes ell
T2337 10-14 UMLS/C0205136 denotes ver
T2331 308-314 UMLS/C0392905 denotes ints o
T2327 308-314 UMLS/C1269611 denotes ints o
T2301 213-220 UMLS/C1880229 denotes tudies
T2298 149-153 UMLS/C1269647 denotes ell
T2294 467-477 UMLS/C0332147 denotes stioned th
T2293 395-400 UMLS/C0383327 denotes -18 a
T2285 579-592 UMLS/C0334094 denotes liferation of
T2274 742-744 UMLS/C0319022 denotes be
T2534 463-466 UMLS/C2348947 denotes qu
T2531 44-51 UMLS/C0039194 denotes cells
T2525 720-724 UMLS/C1705809 denotes e of
T2524 482-486 UMLS/C1705809 denotes e of
T2523 604-612 UMLS/C0205369 denotes cific T
T2521 720-724 UMLS/C1705812 denotes e of
T2520 482-486 UMLS/C1705812 denotes e of
T2519 720-724 UMLS/C1705810 denotes e of
T2518 482-486 UMLS/C1705810 denotes e of
T2516 720-724 UMLS/C1705811 denotes e of
T2515 482-486 UMLS/C1705811 denotes e of
T2513 376-380 UMLS/C1522428 denotes -1,
T2510 308-314 UMLS/C0022417 denotes ints o
T2507 762-771 UMLS/C1705242 denotes ferent as
T2502 376-380 UMLS/C1149212 denotes -1,
T2497 388-393 UMLS/C1149222 denotes -15,
T2495 720-724 UMLS/C0035820 denotes e of
T2494 482-486 UMLS/C0035820 denotes e of
T2491 395-400 UMLS/C1149225 denotes -18 a
T2490 278-282 UMLS/C1149229 denotes L-2
T2273 633-635 UMLS/C0319022 denotes ty
T2271 154-164 UMLS/C0032659 denotes opulation
T2269 417-425 UMLS/C2346714 denotes ndant in
T2255 213-220 UMLS/C0947630 denotes tudies
T2245 695-704 UMLS/C0079189 denotes okines in
T2244 356-365 UMLS/C0079189 denotes tokines i
T2243 260-269 UMLS/C0079189 denotes ytokines
T2235 141-148 UMLS/C0549177 denotes argest

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3122 769-776 NN denotes aspects
T3121 759-768 JJ denotes different
T3120 756-758 IN denotes in
T3119 745-755 VB denotes elucidated
T3118 742-744 VB denotes be
T3117 739-741 TO denotes to
T3116 733-738 VB denotes needs
T3115 727-732 NN denotes cells
T3114 725-726 NN denotes T
T3113 722-724 IN denotes of
T3112 717-721 NN denotes role
T3111 713-716 DT denotes the
T3110 711-712 -COMMA- denotes ,
T3109 710-711 -RRB- denotes ]
T3108 709-710 CD denotes 4
T3107 708-709 -LRB- denotes [
T3106 705-707 NN denotes RA
T3105 702-704 IN denotes in
T3104 692-701 NN denotes cytokines
T3103 690-691 -RRB- denotes )
T3102 687-690 NN denotes Th1
T3101 686-687 -LRB- denotes (
T3100 684-685 CD denotes 1
T3099 679-683 NN denotes type
T3098 672-678 NN denotes helper
T3097 670-671 NN denotes T
T3096 667-669 IN denotes of
T3095 659-666 NN denotes skewing
T3094 655-658 DT denotes the
T3093 651-654 CC denotes and
T3092 649-650 -COMMA- denotes ,
T3091 641-649 NN denotes collagen
T3090 638-640 CD denotes II
T3089 633-637 NN denotes type
T3088 630-632 TO denotes to
T3087 619-629 RB denotes especially
T3086 617-618 -COMMA- denotes ,
T3085 612-617 NN denotes cells
T3084 610-611 NN denotes T
T3083 601-609 JJ denotes specific
T3082 593-600 NN denotes antigen
T3081 590-592 IN denotes of
T3080 576-589 NN denotes proliferation
T3079 567-575 VB denotes enhanced
T3078 563-566 DT denotes the
T3077 550-562 VB denotes demonstrated
T3076 542-549 RB denotes already
T3075 537-541 VB denotes have
T3074 534-536 PRP denotes we
T3073 526-533 IN denotes Because
T3072 523-524 -RRB- denotes ]
T3071 522-523 CD denotes 3
T3070 521-522 -LRB- denotes [
T3069 518-520 NN denotes RA
T3068 515-517 IN denotes of
T3067 502-514 NN denotes pathogenesis
T3066 498-501 DT denotes the
T3065 495-497 IN denotes in
T3064 489-494 NN denotes cells
T3063 487-488 NN denotes T
T3062 484-486 IN denotes of
T3061 479-483 NN denotes role
T3060 475-478 DT denotes the
T3059 464-474 VB denotes questioned
T3058 460-463 VB denotes has
T3057 452-459 NN denotes paradox
T3056 447-451 DT denotes This
T3055 437-445 NN denotes synovium
T3054 426-436 JJ denotes rheumatoid
T3053 423-425 IN denotes in
T3052 414-422 JJ denotes abundant
T3051 409-413 VB denotes were
T3050 403-408 NN denotes TNF-α
T3049 399-402 CC denotes and
T3048 393-398 NN denotes IL-18
T3047 391-392 -COMMA- denotes ,
T3046 386-391 NN denotes IL-15
T3045 384-385 -COMMA- denotes ,
T3044 380-384 NN denotes IL-6
T3043 378-379 -COMMA- denotes ,
T3022 244-245 NN denotes T
T3021 241-243 IN denotes of
T3020 233-240 NN denotes paucity
T3019 220-232 VB denotes demonstrated
T3018 212-219 NN denotes studies
T3017 209-211 IN denotes of
T3016 202-208 NN denotes series
T3015 200-201 DT denotes a
T3014 198-199 -COMMA- denotes ,
T3013 191-198 RB denotes However
T3012 181-189 NN denotes synovium
T3011 177-180 DT denotes the
T3010 164-176 VB denotes infiltrating
T3009 153-163 NN denotes population
T3008 148-152 NN denotes cell
T3007 140-147 JJ denotes largest
T3006 136-139 DT denotes the
T3005 132-135 VB denotes are
T3004 127-131 PRP denotes they
T3003 119-126 IN denotes because
T3002 108-118 JJ denotes undisputed
T3001 104-107 VB denotes was
T3000 101-103 NN denotes RA
T2999 98-100 IN denotes as
T2998 93-97 JJ denotes such
T2997 85-92 NN denotes disease
T2996 74-84 JJ denotes autoimmune
T2995 71-73 IN denotes of
T2994 58-70 NN denotes pathogenesis
T2993 54-57 DT denotes the
T2992 51-53 IN denotes in
T2991 45-50 NN denotes cells
T2990 43-44 NN denotes T
T2989 40-42 IN denotes of
T2988 32-39 NN denotes primacy
T2987 28-31 DT denotes the
T2986 26-27 -COMMA- denotes ,
T2985 23-26 RB denotes ago
T2984 16-22 NN denotes decade
T2983 14-15 DT denotes a
T2982 9-13 IN denotes over
T2981 2-8 JJ denotes little
T2980 0-1 DT denotes A
T3042 374-378 NN denotes IL-1
T3041 364-373 VB denotes including
T3040 354-363 NN denotes cytokines
T3039 343-353 NN denotes fibroblast
T3038 339-342 CC denotes and
T3037 328-338 NN denotes macrophage
T3036 320-327 IN denotes whereas
T3035 318-319 -COMMA- denotes ,
T3034 316-318 NN denotes RA
T3033 313-315 IN denotes of
T3032 306-312 NN denotes joints
T3031 302-305 DT denotes the
T3030 299-301 IN denotes in
T3029 286-298 NN denotes interferon-γ
T3028 282-285 CC denotes and
T3027 277-281 NN denotes IL-2
T3026 274-276 IN denotes as
T3025 269-273 JJ denotes such
T3024 259-268 NN denotes cytokines
T3023 246-258 JJ denotes cell-derived
R1240 T2981 T2980 arg1Of little,A
R1241 T2983 T2982 arg1Of a,over
R1242 T2984 T2983 arg1Of decade,a
R1243 T2985 T2981 arg1Of ago,little
R1244 T2985 T2984 arg1Of ago,decade
R1245 T2988 T2987 arg1Of primacy,the
R1246 T2988 T2989 arg1Of primacy,of
R1247 T2988 T2992 arg1Of primacy,in
R1248 T2988 T2999 arg1Of primacy,as
R1249 T2988 T3001 arg1Of primacy,was
R1250 T2988 T3002 arg1Of primacy,undisputed
R1251 T2991 T2989 arg2Of cells,of
R1252 T2991 T2990 arg1Of cells,T
R1253 T2994 T2992 arg2Of pathogenesis,in
R1254 T2994 T2993 arg1Of pathogenesis,the
R1255 T2994 T2995 arg1Of pathogenesis,of
R1256 T2997 T2995 arg2Of disease,of
R1257 T2997 T2996 arg1Of disease,autoimmune
R1258 T2999 T2998 arg1Of as,such
R1259 T3000 T2999 arg2Of RA,as
R1260 T3001 T2985 arg1Of was,ago
R1261 T3001 T2986 arg1Of was,","
R1262 T3001 T3003 arg1Of was,because
R1263 T3002 T3001 arg2Of undisputed,was
R1264 T3004 T3005 arg1Of they,are
R1265 T3005 T3003 arg2Of are,because
R1266 T3009 T3005 arg2Of population,are
R1267 T3009 T3006 arg1Of population,the
R1268 T3009 T3007 arg1Of population,largest
R1269 T3009 T3008 arg1Of population,cell
R1270 T3009 T3010 arg1Of population,infiltrating
R1271 T3012 T3010 arg2Of synovium,infiltrating
R1272 T3012 T3011 arg1Of synovium,the
R1273 T3016 T3015 arg1Of series,a
R1274 T3016 T3017 arg1Of series,of
R1275 T3016 T3019 arg1Of series,demonstrated
R1276 T3018 T3017 arg2Of studies,of
R1277 T3019 T3013 arg1Of demonstrated,However
R1278 T3019 T3014 arg1Of demonstrated,","
R1279 T3019 T3035 arg1Of demonstrated,","
R1280 T3019 T3036 arg1Of demonstrated,whereas
R1281 T3020 T3019 arg2Of paucity,demonstrated
R1282 T3020 T3021 arg1Of paucity,of
R1283 T3024 T3021 arg2Of cytokines,of
R1284 T3024 T3022 arg1Of cytokines,T
R1285 T3024 T3023 arg1Of cytokines,cell-derived
R1286 T3024 T3026 arg1Of cytokines,as
R1287 T3026 T3025 arg1Of as,such
R1288 T3027 T3028 arg1Of IL-2,and
R1289 T3028 T3026 arg2Of and,as
R1290 T3028 T3030 arg1Of and,in
R1291 T3029 T3028 arg2Of interferon-γ,and
R1292 T3032 T3030 arg2Of joints,in
R1293 T3032 T3031 arg1Of joints,the
R1294 T3032 T3033 arg1Of joints,of
R1295 T3034 T3033 arg2Of RA,of
R1296 T3037 T3038 arg1Of macrophage,and
R1297 T3039 T3038 arg2Of fibroblast,and
R1298 T3040 T3037 arg1Of cytokines,macrophage
R1299 T3040 T3039 arg1Of cytokines,fibroblast
R1300 T3040 T3041 arg1Of cytokines,including
R1301 T3040 T3051 arg1Of cytokines,were
R1302 T3040 T3052 arg1Of cytokines,abundant
R1303 T3042 T3043 arg1Of IL-1,","
R1304 T3043 T3045 arg1Of ",",","
R1305 T3044 T3043 arg2Of IL-6,","
R1306 T3045 T3047 arg1Of ",",","
R1307 T3046 T3045 arg2Of IL-15,","
R1308 T3047 T3049 arg1Of ",",and
R1309 T3048 T3047 arg2Of IL-18,","
R1310 T3049 T3041 arg2Of and,including
R1311 T3050 T3049 arg2Of TNF-α,and
R1312 T3051 T3036 arg2Of were,whereas
R1313 T3051 T3053 arg1Of were,in
R1314 T3052 T3051 arg2Of abundant,were
R1315 T3055 T3053 arg2Of synovium,in
R1316 T3055 T3054 arg1Of synovium,rheumatoid
R1317 T3057 T3056 arg1Of paradox,This
R1318 T3057 T3058 arg1Of paradox,has
R1319 T3057 T3059 arg1Of paradox,questioned
R1320 T3059 T3058 arg2Of questioned,has
R1321 T3061 T3059 arg2Of role,questioned
R1322 T3061 T3060 arg1Of role,the
R1323 T3061 T3062 arg1Of role,of
R1324 T3061 T3065 arg1Of role,in
R1325 T3064 T3062 arg2Of cells,of
R1326 T3064 T3063 arg1Of cells,T
R1327 T3067 T3065 arg2Of pathogenesis,in
R1328 T3067 T3066 arg1Of pathogenesis,the
R1329 T3067 T3068 arg1Of pathogenesis,of
R1330 T3069 T3068 arg2Of RA,of
R1331 T3069 T3070 arg1Of RA,[
R1332 T3071 T3070 arg2Of 3,[
R1333 T3072 T3070 arg3Of ],[
R1334 T3074 T3075 arg1Of we,have
R1335 T3074 T3077 arg1Of we,demonstrated
R1336 T3077 T3073 arg2Of demonstrated,Because
R1337 T3077 T3075 arg2Of demonstrated,have
R1338 T3077 T3076 arg1Of demonstrated,already
R1339 T3077 T3105 arg1Of demonstrated,in
R1340 T3080 T3078 arg1Of proliferation,the
R1341 T3080 T3079 arg2Of proliferation,enhanced
R1342 T3080 T3081 arg1Of proliferation,of
R1343 T3080 T3086 arg1Of proliferation,","
R1344 T3080 T3088 arg1Of proliferation,to
R1345 T3080 T3093 arg1Of proliferation,and
R1346 T3085 T3081 arg2Of cells,of
R1347 T3085 T3082 arg1Of cells,antigen
R1348 T3085 T3083 arg1Of cells,specific
R1349 T3085 T3084 arg1Of cells,T
R1350 T3088 T3087 arg1Of to,especially
R1351 T3091 T3088 arg2Of collagen,to
R1352 T3091 T3089 arg1Of collagen,type
R1353 T3091 T3090 arg1Of collagen,II
R1354 T3093 T3077 arg2Of and,demonstrated
R1355 T3093 T3092 arg1Of and,","
R1356 T3095 T3093 arg2Of skewing,and
R1357 T3095 T3094 arg1Of skewing,the
R1358 T3095 T3096 arg1Of skewing,of
R1359 T3102 T3101 arg2Of Th1,(
R1360 T3103 T3101 arg3Of ),(
R1361 T3104 T3096 arg2Of cytokines,of
R1362 T3104 T3097 arg1Of cytokines,T
R1363 T3104 T3098 arg1Of cytokines,helper
R1364 T3104 T3099 arg1Of cytokines,type
R1365 T3104 T3100 arg1Of cytokines,1
R1366 T3104 T3101 arg1Of cytokines,(
R1367 T3106 T3105 arg2Of RA,in
R1368 T3106 T3107 arg1Of RA,[
R1369 T3108 T3107 arg2Of 4,[
R1370 T3109 T3107 arg3Of ],[
R1371 T3112 T3111 arg1Of role,the
R1372 T3112 T3113 arg1Of role,of
R1373 T3112 T3116 arg1Of role,needs
R1374 T3112 T3118 arg1Of role,be
R1375 T3112 T3119 arg2Of role,elucidated
R1376 T3115 T3113 arg2Of cells,of
R1377 T3115 T3114 arg1Of cells,T
R1378 T3116 T3073 arg1Of needs,Because
R1379 T3116 T3110 arg1Of needs,","
R1380 T3119 T3116 arg2Of elucidated,needs
R1381 T3119 T3117 arg1Of elucidated,to
R1382 T3119 T3118 arg2Of elucidated,be
R1383 T3119 T3120 arg1Of elucidated,in
R1384 T3122 T3120 arg2Of aspects,in
R1385 T3122 T3121 arg1Of aspects,different

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T3466 277-281 Antecedent denotes IL-2
T3465 244-268 Anaphor denotes T cell-derived cytokines
T3472 403-408 Antecedent denotes TNF-α
T3471 393-398 Antecedent denotes IL-18
T3470 380-384 Antecedent denotes IL-6
T3469 374-378 Antecedent denotes IL-1
T3468 328-363 Anaphor denotes macrophage and fibroblast cytokines
T3467 286-298 Antecedent denotes interferon-γ
R1731 T3465 T3466 boundBy T cell-derived cytokines,IL-2
R1732 T3465 T3467 boundBy T cell-derived cytokines,interferon-γ
R1736 T3468 T3469 boundBy macrophage and fibroblast cytokines,IL-1
R1737 T3468 T3470 boundBy macrophage and fibroblast cytokines,IL-6
R1738 T3468 T3471 boundBy macrophage and fibroblast cytokines,IL-18
R1739 T3468 T3472 boundBy macrophage and fibroblast cytokines,TNF-α

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3484 277-281 Protein denotes IL-2
T3490 403-408 Protein denotes TNF-α
T3489 393-398 Protein denotes IL-18
T3488 386-391 Protein denotes IL-15
T3487 380-384 Protein denotes IL-6
T3486 374-378 Protein denotes IL-1
T3485 286-298 Protein denotes interferon-γ

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3696 386-391 http://www.uniprot.org/uniprot/P40933 denotes IL-15
T3693 380-384 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T3692 286-298 http://www.uniprot.org/uniprot/P01579 denotes interferon-γ
T3691 277-281 http://www.uniprot.org/uniprot/P60568 denotes IL-2
T3689 403-408 http://www.uniprot.org/uniprot/P01375 denotes TNF-α
T3687 403-406 http://www.uniprot.org/uniprot/P01375 denotes TNF

GO-BP

Id Subject Object Predicate Lexical cue
T2772 502-514 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T2771 58-70 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

GO-MF

Id Subject Object Predicate Lexical cue
T3525 393-398 http://purl.obolibrary.org/obo/GO_0045515 denotes IL-18
T3523 386-391 http://purl.obolibrary.org/obo/GO_0016170 denotes IL-15
T3520 380-384 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T3519 286-298 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon-γ
T3518 277-281 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2
T3516 374-378 http://purl.obolibrary.org/obo/GO_0005149 denotes IL-1

GO-CC

Id Subject Object Predicate Lexical cue
T3557 727-732 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3556 612-617 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3555 489-494 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3554 45-50 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2751 0-190 Sentence denotes A little over a decade ago, the primacy of T cells in the pathogenesis of autoimmune disease such as RA was undisputed because they are the largest cell population infiltrating the synovium.
T2754 526-777 Sentence denotes Because we have already demonstrated the enhanced proliferation of antigen specific T cells, especially to type II collagen, and the skewing of T helper type 1 (Th1) cytokines in RA [4], the role of T cells needs to be elucidated in different aspects.
T2753 447-525 Sentence denotes This paradox has questioned the role of T cells in the pathogenesis of RA [3].
T2752 191-446 Sentence denotes However, a series of studies demonstrated paucity of T cell-derived cytokines such as IL-2 and interferon-γ in the joints of RA, whereas macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α were abundant in rheumatoid synovium.
T21 0-190 Sentence denotes A little over a decade ago, the primacy of T cells in the pathogenesis of autoimmune disease such as RA was undisputed because they are the largest cell population infiltrating the synovium.
T22 191-446 Sentence denotes However, a series of studies demonstrated paucity of T cell-derived cytokines such as IL-2 and interferon-γ in the joints of RA, whereas macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α were abundant in rheumatoid synovium.
T23 447-525 Sentence denotes This paradox has questioned the role of T cells in the pathogenesis of RA [3].
T24 526-777 Sentence denotes Because we have already demonstrated the enhanced proliferation of antigen specific T cells, especially to type II collagen, and the skewing of T helper type 1 (Th1) cytokines in RA [4], the role of T cells needs to be elucidated in different aspects.

simple1

Id Subject Object Predicate Lexical cue
T3661 403-408 Protein denotes TNF-α
T3660 393-398 Protein denotes IL-18
T3659 386-391 Protein denotes IL-15
T3658 380-384 Protein denotes IL-6
T3657 374-378 Protein denotes IL-1
T3656 286-298 Protein denotes interferon-γ
T3655 277-281 Protein denotes IL-2

DLUT931

Id Subject Object Predicate Lexical cue
T3770 403-408 Protein denotes TNF-α
T3769 393-398 Protein denotes IL-18
T3768 386-391 Protein denotes IL-15
T3767 380-384 Protein denotes IL-6
T3766 374-378 Protein denotes IL-1
T3765 286-298 Protein denotes interferon-γ
T3764 277-281 Protein denotes IL-2

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4512 43-50 Entity denotes T cells
T4509 136-163 Entity denotes the largest cell population
T4505 638-649 Entity denotes II collagen
T4504 722-732 Entity denotes of T cells
T4502 328-338 Entity denotes macrophage
T4501 403-408 Protein denotes TNF-α
T4500 518-524 Protein denotes RA [3]
T4499 286-319 Protein denotes interferon-γ in the joints of RA,
T4498 484-494 Entity denotes of T cells
T4597 119-189 Binding denotes because they are the largest cell population infiltrating the synovium
T4594 286-319 Localization denotes interferon-γ in the joints of RA,
T4593 328-409 Localization denotes macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α
T4591 244-276 Gene_expression denotes T cell-derived cytokines such as
T4585 705-712 Protein denotes RA [4],
T4573 393-398 Protein denotes IL-18
T4572 380-384 Protein denotes IL-6
T4571 374-378 Protein denotes IL-1
T4569 590-617 Entity denotes of antigen specific T cells
T4564 667-712 Protein denotes of T helper type 1 (Th1) cytokines in RA [4],
T4562 74-103 Protein denotes autoimmune disease such as RA
T4553 593-600 Entity denotes antigen
T4550 667-712 Entity denotes of T helper type 1 (Th1) cytokines in RA [4],
T4549 386-391 Protein denotes IL-15
T4546 244-281 Protein denotes T cell-derived cytokines such as IL-2
T4545 679-691 Protein denotes type 1 (Th1)
T4544 638-649 Entity denotes II collagen
T4538 244-276 Protein denotes T cell-derived cytokines such as
T4536 313-318 Protein denotes of RA
T4534 343-353 Entity denotes fibroblast
T4533 328-408 Protein denotes macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α
T4531 244-258 Entity denotes T cell-derived
R2445 T4499 T4594 themeOf "interferon-γ in the joints of RA,","interferon-γ in the joints of RA,"
R2447 T4502 T4593 locationOf macrophage,"macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α "
R2457 T4533 T4593 themeOf "macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α","macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α "
R2460 T4534 T4593 locationOf fibroblast,"macrophage and fibroblast cytokines including IL-1, IL-6, IL-15, IL-18 and TNF-α "
R2461 T4538 T4591 themeOf T cell-derived cytokines such as,T cell-derived cytokines such as

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3974 177-180 DT denotes the
T3973 164-176 VBG denotes infiltrating
T3972 153-163 NN denotes population
T3971 148-152 NN denotes cell
T3970 140-147 JJS denotes largest
T3969 136-139 DT denotes the
T3968 132-135 VBP denotes are
T3967 127-131 PRP denotes they
T3966 119-126 IN denotes because
T3965 108-118 JJ denotes undisputed
T3964 104-107 VBD denotes was
T3963 101-103 NNP denotes RA
T3962 98-100 IN denotes as
T3961 93-97 JJ denotes such
T3960 85-92 NN denotes disease
T3959 74-84 JJ denotes autoimmune
T3958 71-73 IN denotes of
T3957 58-70 NN denotes pathogenesis
T3956 54-57 DT denotes the
T3955 51-53 IN denotes in
T3954 45-50 NNS denotes cells
T3953 43-44 NNP denotes T
T3952 40-42 IN denotes of
T3951 32-39 NN denotes primacy
T3950 28-31 DT denotes the
T3949 26-27 , denotes ,
T3948 23-26 RB denotes ago
T3947 16-22 NN denotes decade
T3946 14-15 DT denotes a
T3945 9-13 IN denotes over
T3944 2-8 JJ denotes little
T3943 0-1 DT denotes A
T4089 776-777 . denotes .
T4088 769-776 NNS denotes aspects
T4087 759-768 JJ denotes different
T4086 756-758 IN denotes in
T4085 745-755 VBN denotes elucidated
T4084 742-744 VB denotes be
T4083 739-741 TO denotes to
T4082 733-738 VBZ denotes needs
T4081 727-732 NNS denotes cells
T4080 725-726 NNP denotes T
T4079 722-724 IN denotes of
T4078 717-721 NN denotes role
T4077 713-716 DT denotes the
T4076 711-712 , denotes ,
T4075 710-711 NNP denotes ]
T4074 709-710 CD denotes 4
T4073 708-709 NNP denotes [
T4072 705-707 NNP denotes RA
T4071 702-704 IN denotes in
T4070 692-701 NNS denotes cytokines
T4069 690-691 -RRB- denotes )
T4068 687-690 NN denotes Th1
T4067 686-687 -LRB- denotes (
T4066 684-685 CD denotes 1
T4065 679-683 NN denotes type
T4064 672-678 NN denotes helper
T4063 670-671 NNP denotes T
T4062 667-669 IN denotes of
T4061 659-666 NN denotes skewing
T4060 655-658 DT denotes the
T4059 651-654 CC denotes and
T4058 649-650 , denotes ,
T4057 641-649 NN denotes collagen
T4056 638-640 NNP denotes II
T4055 633-637 NN denotes type
T4054 630-632 TO denotes to
T4053 619-629 RB denotes especially
T4052 617-618 , denotes ,
T4051 612-617 NNS denotes cells
T4050 610-611 NNP denotes T
T4049 601-609 JJ denotes specific
T4048 593-600 NN denotes antigen
T4047 590-592 IN denotes of
T4046 576-589 NN denotes proliferation
T4045 567-575 JJ denotes enhanced
T4044 563-566 DT denotes the
T4043 550-562 VBN denotes demonstrated
T4042 542-549 RB denotes already
T4041 537-541 VBP denotes have
T4040 534-536 PRP denotes we
T4039 526-533 IN denotes Because
T4038 524-525 . denotes .
T4037 523-524 NNP denotes ]
T4036 522-523 CD denotes 3
T4035 521-522 NNP denotes [
T4034 518-520 NNP denotes RA
T4033 515-517 IN denotes of
T4032 502-514 NN denotes pathogenesis
T4031 498-501 DT denotes the
T4030 495-497 IN denotes in
T4029 489-494 NNS denotes cells
T4028 487-488 NNP denotes T
T4027 484-486 IN denotes of
T4026 479-483 NN denotes role
T4025 475-478 DT denotes the
T4024 464-474 VBN denotes questioned
T4023 460-463 VBZ denotes has
T4022 452-459 NN denotes paradox
T4021 447-451 DT denotes This
T4020 445-446 . denotes .
T4019 437-445 NN denotes synovium
T4018 426-436 JJ denotes rheumatoid
T4017 423-425 IN denotes in
T4016 414-422 JJ denotes abundant
T4015 409-413 VBD denotes were
T4014 403-408 NNP denotes TNF-α
T4013 399-402 CC denotes and
T4012 393-398 NNP denotes IL-18
T4011 391-392 , denotes ,
T4010 386-391 NNP denotes IL-15
T4009 384-385 , denotes ,
T4008 380-384 NNP denotes IL-6
T4007 378-379 , denotes ,
T4006 374-378 NNP denotes IL-1
T4005 364-373 VBG denotes including
T4004 354-363 NNS denotes cytokines
T4003 343-353 NN denotes fibroblast
T4002 339-342 CC denotes and
T4001 328-338 NN denotes macrophage
T4000 320-327 IN denotes whereas
T3999 318-319 , denotes ,
T3998 316-318 NNP denotes RA
T3997 313-315 IN denotes of
T3996 306-312 NNS denotes joints
T3995 302-305 DT denotes the
T3994 299-301 IN denotes in
T3993 286-298 NN denotes interferon-γ
T3992 282-285 CC denotes and
T3991 277-281 NN denotes IL-2
T3990 274-276 IN denotes as
T3989 269-273 JJ denotes such
T3988 259-268 NNS denotes cytokines
T3987 246-258 JJ denotes cell-derived
T3986 244-245 NNP denotes T
T3985 241-243 IN denotes of
T3984 233-240 NN denotes paucity
T3983 220-232 VBD denotes demonstrated
T3982 212-219 NNS denotes studies
T3981 209-211 IN denotes of
T3980 202-208 NN denotes series
T3979 200-201 DT denotes a
T3978 198-199 , denotes ,
T3977 191-198 RB denotes However
T3976 189-190 . denotes .
T3975 181-189 NN denotes synovium
R1851 T3948 T3964 advmod ago,was
R1853 T3949 T3964 punct ",",was
R1854 T3950 T3951 det the,primacy
R1856 T3951 T3964 nsubj primacy,was
R1857 T3952 T3951 prep of,primacy
R1859 T3953 T3954 compound T,cells
R1860 T3954 T3952 pobj cells,of
R1862 T3955 T3951 prep in,primacy
R1863 T3956 T3957 det the,pathogenesis
R1864 T3957 T3955 pobj pathogenesis,in
R1866 T3958 T3957 prep of,pathogenesis
R1867 T3959 T3960 amod autoimmune,disease
R1868 T3960 T3958 pobj disease,of
R1870 T3961 T3962 amod such,as
R1871 T3962 T3957 prep as,pathogenesis
R1872 T3963 T3964 nsubj RA,was
R1874 T3964 T3964 ROOT was,was
R1875 T3965 T3964 acomp undisputed,was
R1876 T3966 T3968 mark because,are
R1877 T3967 T3968 nsubj they,are
R1879 T3968 T3964 advcl are,was
R1881 T3969 T3972 det the,population
R1882 T3970 T3972 amod largest,population
R1884 T3971 T3972 compound cell,population
R1885 T3972 T3968 attr population,are
R1886 T3973 T3972 acl infiltrating,population
R1888 T3974 T3975 det the,synovium
R1889 T3975 T3973 dobj synovium,infiltrating
R1890 T3976 T3964 punct .,was
R1892 T3977 T3983 advmod However,demonstrated
R1893 T3978 T3983 punct ",",demonstrated
R1895 T3979 T3980 det a,series
R1896 T3980 T3983 nsubj series,demonstrated
R1897 T3981 T3980 prep of,series
R1899 T3982 T3981 pobj studies,of
R1900 T3983 T3983 ROOT demonstrated,demonstrated
R1902 T3984 T3983 dobj paucity,demonstrated
R1903 T3985 T3984 prep of,paucity
R1904 T3986 T3988 nmod T,cytokines
R1906 T3987 T3988 amod cell-derived,cytokines
R1907 T3988 T3985 pobj cytokines,of
R1908 T3989 T3990 amod such,as
R1910 T3990 T3988 prep as,cytokines
R1911 T3991 T3990 pobj IL-2,as
R1912 T3992 T3991 cc and,IL-2
R1914 T3993 T3991 conj interferon-γ,IL-2
R1915 T3994 T3983 prep in,demonstrated
R1916 T3995 T3996 det the,joints
R1917 T3996 T3994 pobj joints,in
R1919 T3997 T3996 prep of,joints
R1920 T3998 T3997 pobj RA,of
R1921 T3999 T3983 punct ",",demonstrated
R1924 T4000 T4015 mark whereas,were
R1926 T4001 T4015 nsubj macrophage,were
R1927 T4002 T4001 cc and,macrophage
R1928 T4003 T4001 conj fibroblast,macrophage
R1930 T4004 T4001 conj cytokines,macrophage
R1931 T4005 T4004 prep including,cytokines
R1932 T4006 T4005 pobj IL-1,including
R1933 T4007 T4006 punct ",",IL-1
R1935 T4008 T4006 conj IL-6,IL-1
R1936 T4009 T4008 punct ",",IL-6
R1937 T4010 T4008 conj IL-15,IL-6
R1938 T4011 T4010 punct ",",IL-15
R1940 T4012 T4010 conj IL-18,IL-15
R1941 T4013 T4012 cc and,IL-18
R1943 T4014 T4012 conj TNF-α,IL-18
R1944 T4015 T3983 advcl were,demonstrated
R1945 T4016 T4015 acomp abundant,were
R1946 T4017 T4016 prep in,abundant
R1948 T4018 T4019 amod rheumatoid,synovium
R1949 T4019 T4017 pobj synovium,in
R1950 T4020 T3983 punct .,demonstrated
R1952 T4021 T4022 det This,paradox
R1953 T4022 T4024 nsubj paradox,questioned
R1954 T4023 T4024 aux has,questioned
R1956 T4024 T4024 ROOT questioned,questioned
R1957 T4025 T4026 det the,role
R1959 T4026 T4024 dobj role,questioned
R1960 T4027 T4026 prep of,role
R1961 T4028 T4029 compound T,cells
R1963 T4029 T4027 pobj cells,of
R1964 T4030 T4026 prep in,role
R1965 T4031 T4032 det the,pathogenesis
R1967 T4032 T4030 pobj pathogenesis,in
R1968 T4033 T4032 prep of,pathogenesis
R1970 T4034 T4035 compound RA,[
R1971 T4035 T4033 pobj [,of
R1972 T4036 T4037 nummod 3,]
R1974 T4037 T4032 appos ],pathogenesis
R1975 T4038 T4024 punct .,questioned
R1976 T4039 T4043 mark Because,demonstrated
R1978 T4040 T4043 nsubj we,demonstrated
R1979 T4041 T4043 aux have,demonstrated
R1980 T4042 T4043 advmod already,demonstrated
R1981 T4043 T4043 ROOT demonstrated,demonstrated
R1982 T4044 T4046 det the,proliferation
R1986 T4045 T4046 amod enhanced,proliferation
R1987 T4046 T4043 dobj proliferation,demonstrated
R1989 T4047 T4046 prep of,proliferation
R1991 T4048 T4047 pobj antigen,of
R1992 T4049 T4051 amod specific,cells
R1994 T4050 T4051 compound T,cells
R1995 T4051 T4047 pobj cells,of
R1996 T4052 T4046 punct ",",proliferation
R1998 T4053 T4055 advmod especially,type
R1999 T4054 T4055 aux to,type
R2001 T4055 T4082 advcl type,needs
R2002 T4056 T4057 compound II,collagen
R2003 T4057 T4055 dobj collagen,type
R2005 T4058 T4055 punct ",",type
R2006 T4059 T4055 cc and,type
R2007 T4060 T4061 det the,skewing
R2009 T4061 T4055 conj skewing,type
R2010 T4062 T4061 prep of,skewing
R2011 T4063 T4064 compound T,helper
R2013 T4064 T4065 compound helper,type
R2014 T4065 T4061 conj type,skewing
R2016 T4066 T4065 nummod 1,type
R2017 T4067 T4068 punct (,Th1
R2018 T4068 T4065 appos Th1,type
R2020 T4069 T4068 punct ),Th1
R2021 T4070 T4065 conj cytokines,type
R2022 T4071 T4070 prep in,cytokines
R2024 T4072 T4073 compound RA,[
R2025 T4073 T4071 pobj [,in
R2027 T4074 T4075 nummod 4,]
R2028 T4075 T4082 nsubj ],needs
R2029 T4076 T4075 punct ",",]
R2030 T4077 T4078 det the,role
R2031 T4078 T4075 appos role,]
R2032 T4079 T4078 prep of,role
R2034 T4080 T4081 compound T,cells
R2035 T4081 T4079 pobj cells,of
R2036 T4082 T4043 conj needs,demonstrated
R2038 T4083 T4085 aux to,elucidated
R2039 T4084 T4085 auxpass be,elucidated
R2040 T4085 T4082 xcomp elucidated,needs
R2042 T4086 T4085 prep in,elucidated
R2043 T4087 T4088 amod different,aspects
R2044 T4088 T4086 pobj aspects,in
R2046 T4089 T4082 punct .,needs
R2115 T3943 T3944 det A,little
R2119 T3944 T3948 npadvmod little,ago
R2120 T3945 T3946 quantmod over,a
R2121 T3946 T3947 nummod a,decade
R2122 T3947 T3948 npadvmod decade,ago

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3619 633-649 Protein denotes type II collagen
T3618 414-422 Gene_expression denotes abundant
T3617 414-422 Gene_expression denotes abundant
T3616 414-422 Gene_expression denotes abundant
T3615 414-422 Gene_expression denotes abundant
T3614 414-422 Gene_expression denotes abundant
T3613 414-422 Gene_expression denotes abundant
T3612 426-445 Protein denotes rheumatoid synovium
T3611 403-408 Protein denotes TNF-α
T3610 393-398 Protein denotes IL-18
T3609 386-391 Protein denotes IL-15
T3608 380-384 Protein denotes IL-6
T3607 374-378 Protein denotes IL-1
T3606 286-298 Protein denotes interferon-γ
T3605 277-281 Protein denotes IL-2
R1754 T3607 T3613 themeOf IL-1,abundant
R1757 T3608 T3614 themeOf IL-6,abundant
R1758 T3609 T3615 themeOf IL-15,abundant
R1759 T3610 T3616 themeOf IL-18,abundant
R1760 T3611 T3617 themeOf TNF-α,abundant
R1761 T3612 T3618 themeOf rheumatoid synovium,abundant

testone

Id Subject Object Predicate Lexical cue
T2115 403-408 Protein denotes TNF-α
T2114 393-398 Protein denotes IL-18
T2113 386-391 Protein denotes IL-15
T2112 380-384 Protein denotes IL-6
T2111 374-378 Protein denotes IL-1
T2110 286-298 Protein denotes interferon-γ
T2109 277-281 Protein denotes IL-2