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PMC:1064895 / 21752-21991 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T15581 202-211 Positive_regulation denotes activated
T15580 188-198 Gene_expression denotes production
T15579 182-187 Protein denotes IL-17
T15578 87-91 Protein denotes CD28
T15577 17-21 Protein denotes AP-1
T15551 182-187 Protein denotes IL-17
T15550 87-91 Protein denotes CD28
T15549 17-21 Protein denotes AP-1
R8563 T15579 T15580 themeOf IL-17,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16333 182-187 Protein denotes IL-17
T16342 188-198 Gene_expression denotes production
T16332 87-91 Protein denotes CD28
T16331 17-21 Protein denotes AP-1
R8867 T16333 T16342 themeOf IL-17,production

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16808 188-198 Gene_expression denotes production
T16800 182-187 Protein denotes IL-17
T16799 87-91 Protein denotes CD28
T16798 17-21 Protein denotes AP-1
R9196 T16800 T16808 themeOf IL-17,production

biosemtest

Id Subject Object Predicate Lexical cue
T15811 154-158 UMLS/C0024497 denotes llul
T15784 88-92 UMLS/C0332287 denotes D28
T15774 154-158 UMLS/C0205225 denotes llul
T15765 224-228 UMLS/C1321301 denotes tien
T15757 33-40 UMLS/C1704259 denotes not ac
T15754 104-108 UMLS/C1511726 denotes own)
T15749 154-158 UMLS/C1542147 denotes llul
T15747 173-190 UMLS/C0037080 denotes thway in IL-17 pr
T15743 28-32 UP/P21525 denotes y wa
T15726 159-172 UMLS/C0178719 denotes r signaling p
T15724 1-4 UMLS/C0349966 denotes n c
T15720 28-32 UP/A8MPH9 denotes y wa
T15707 28-32 UMLS/C0087140 denotes y wa
T15690 214-223 UMLS/C1879547 denotes MC from p
T15689 49-58 UMLS/C1879547 denotes y stimula
T15683 28-32 UMLS/C0162508 denotes y wa
T15678 28-32 UMLS/C1333571 denotes y wa
T15676 62-73 UMLS/C1948023 denotes with anti-
T15660 62-73 UMLS/C1292856 denotes with anti-
T15657 159-172 UMLS/C0175996 denotes r signaling p
T15633 173-190 UMLS/C0086982 denotes thway in IL-17 pr
T15601 28-32 UMLS/C0812312 denotes y wa
T15589 28-32 UMLS/C0085828 denotes y wa
T15585 14-22 UMLS/C1979874 denotes he AP-1
T15810 194-210 UMLS/C1819444 denotes tion by activate
T15799 33-40 UMLS/C1705987 denotes not ac
T15796 109-112 UMLS/C1518422 denotes de
T15795 45-48 UMLS/C1518422 denotes ed

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16147 236-238 NN denotes RA
T16146 231-235 IN denotes with
T16145 222-230 NN denotes patients
T16144 217-221 IN denotes from
T16143 212-216 NN denotes PBMC
T16142 202-211 VB denotes activated
T16141 199-201 IN denotes by
T16140 188-198 NN denotes production
T16139 182-187 NN denotes IL-17
T16138 179-181 IN denotes in
T16137 171-178 NN denotes pathway
T16136 161-170 NN denotes signaling
T16135 147-160 JJ denotes intracellular
T16134 142-146 JJ denotes main
T16133 138-141 DT denotes the
T16132 135-137 VB denotes is
T16131 129-134 NN denotes NF-κB
T16130 124-128 IN denotes that
T16129 110-123 VB denotes demonstrating
T16128 108-109 -COMMA- denotes ,
T16127 107-108 -RRB- denotes )
T16126 102-107 VB denotes shown
T16125 98-101 RB denotes not
T16124 93-97 NN denotes data
T16123 92-93 -LRB- denotes (
T16122 82-91 JJ denotes anti-CD28
T16121 77-81 CC denotes plus
T16120 68-76 JJ denotes anti-CD3
T16119 63-67 IN denotes with
T16118 51-62 NN denotes stimulation
T16117 48-50 IN denotes by
T16116 38-47 VB denotes activated
T16115 34-37 RB denotes not
T16114 30-33 VB denotes was
T16113 22-29 NN denotes pathway
T16112 17-21 NN denotes AP-1
T16111 13-16 DT denotes the
T16110 11-12 -COMMA- denotes ,
T16109 3-11 NN denotes contrast
T16108 0-2 IN denotes In
R8795 T16109 T16108 arg2Of contrast,In
R8796 T16113 T16111 arg1Of pathway,the
R8797 T16113 T16112 arg1Of pathway,AP-1
R8798 T16113 T16114 arg1Of pathway,was
R8799 T16113 T16116 arg2Of pathway,activated
R8800 T16116 T16108 arg1Of activated,In
R8801 T16116 T16110 arg1Of activated,","
R8802 T16116 T16114 arg2Of activated,was
R8803 T16116 T16115 arg1Of activated,not
R8804 T16116 T16128 arg1Of activated,","
R8805 T16116 T16129 modOf activated,demonstrating
R8806 T16118 T16116 arg1Of stimulation,activated
R8807 T16118 T16117 arg2Of stimulation,by
R8808 T16118 T16119 arg1Of stimulation,with
R8809 T16120 T16121 arg1Of anti-CD3,plus
R8810 T16122 T16121 arg2Of anti-CD28,plus
R8811 T16124 T16119 arg2Of data,with
R8812 T16124 T16120 arg1Of data,anti-CD3
R8813 T16124 T16122 arg1Of data,anti-CD28
R8814 T16124 T16123 arg2Of data,(
R8815 T16124 T16126 arg2Of data,shown
R8816 T16126 T16125 arg1Of shown,not
R8817 T16127 T16123 arg3Of ),(
R8818 T16131 T16132 arg1Of NF-κB,is
R8819 T16132 T16129 arg2Of is,demonstrating
R8820 T16132 T16130 arg1Of is,that
R8821 T16137 T16132 arg2Of pathway,is
R8822 T16137 T16133 arg1Of pathway,the
R8823 T16137 T16134 arg1Of pathway,main
R8824 T16137 T16135 arg1Of pathway,intracellular
R8825 T16137 T16136 arg1Of pathway,signaling
R8826 T16137 T16138 arg1Of pathway,in
R8827 T16137 T16141 arg1Of pathway,by
R8828 T16140 T16138 arg2Of production,in
R8829 T16140 T16139 arg1Of production,IL-17
R8830 T16143 T16141 arg2Of PBMC,by
R8831 T16143 T16142 arg2Of PBMC,activated
R8832 T16143 T16144 arg1Of PBMC,from
R8833 T16145 T16144 arg2Of patients,from
R8834 T16145 T16146 arg1Of patients,with
R8835 T16147 T16146 arg2Of RA,with

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16167 182-187 Protein denotes IL-17
T16166 87-91 Protein denotes CD28
T16165 17-21 Protein denotes AP-1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16308 87-91 http://www.uniprot.org/uniprot/P10747 denotes CD28
T16304 73-76 http://www.uniprot.org/uniprot/P09693 denotes CD3
T16300 73-76 http://www.uniprot.org/uniprot/P07766 denotes CD3
T16296 73-76 http://www.uniprot.org/uniprot/P04234 denotes CD3
T16292 73-76 http://www.uniprot.org/uniprot/P20963 denotes CD3
T16288 182-187 http://www.uniprot.org/uniprot/Q16552 denotes IL-17
T16282 17-21 http://www.uniprot.org/uniprot/P05412 denotes AP-1

GO-BP

Id Subject Object Predicate Lexical cue
T15854 185-211 http://purl.obolibrary.org/obo/GO_0032740 denotes 17 production by activated
T15853 182-198 http://purl.obolibrary.org/obo/GO_0032620 denotes IL-17 production
T15852 182-198 http://purl.obolibrary.org/obo/GO_0032660 denotes IL-17 production
T15838 161-178 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathway
T15836 161-170 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T15833 147-178 http://purl.obolibrary.org/obo/GO_1902531 denotes intracellular signaling pathway
T15831 147-178 http://purl.obolibrary.org/obo/GO_1902532 denotes intracellular signaling pathway
T15829 147-178 http://purl.obolibrary.org/obo/GO_0035556 denotes intracellular signaling pathway
T15827 147-178 http://purl.obolibrary.org/obo/GO_0030522 denotes intracellular signaling pathway

GO-MF

Id Subject Object Predicate Lexical cue
T16173 182-187 http://purl.obolibrary.org/obo/GO_0030367 denotes IL-17

GO-CC

Id Subject Object Predicate Lexical cue
T16183 147-160 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T15825 0-239 Sentence denotes In contrast, the AP-1 pathway was not activated by stimulation with anti-CD3 plus anti-CD28 (data not shown), demonstrating that NF-κB is the main intracellular signaling pathway in IL-17 production by activated PBMC from patients with RA.
T155 0-239 Sentence denotes In contrast, the AP-1 pathway was not activated by stimulation with anti-CD3 plus anti-CD28 (data not shown), demonstrating that NF-κB is the main intracellular signaling pathway in IL-17 production by activated PBMC from patients with RA.

simple1

Id Subject Object Predicate Lexical cue
T16280 182-187 Protein denotes IL-17
T16279 87-91 Protein denotes CD28
T16278 17-21 Protein denotes AP-1

DLUT931

Id Subject Object Predicate Lexical cue
T16373 202-211 Positive_regulation denotes activated
T16372 188-198 Gene_expression denotes production
T16371 38-47 Positive_regulation denotes activated
T16362 182-187 Protein denotes IL-17
T16361 87-91 Protein denotes CD28
T16360 17-21 Protein denotes AP-1
R8876 T16360 T16371 themeOf AP-1,activated
R8877 T16362 T16372 themeOf IL-17,production
R8881 T16372 T16373 themeOf production,activated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16778 182-238 Gene_expression denotes IL-17 production by activated PBMC from patients with RA
T16736 124-134 Protein denotes that NF-κB
T16731 13-29 Protein denotes the AP-1 pathway
T16722 68-76 Protein denotes anti-CD3
T16763 147-160 Entity denotes intracellular
T16756 199-216 Entity denotes by activated PBMC
T16750 82-91 Protein denotes anti-CD28
T16747 236-238 Protein denotes RA
T16744 182-187 Protein denotes IL-17
R9182 T16744 T16778 themeOf IL-17,IL-17 production by activated PBMC from patients with RA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16660 238-239 . denotes .
T16659 236-238 NNP denotes RA
T16658 231-235 IN denotes with
T16657 222-230 NNS denotes patients
T16656 217-221 IN denotes from
T16655 212-216 NNP denotes PBMC
T16654 202-211 VBN denotes activated
T16653 199-201 IN denotes by
T16652 188-198 NN denotes production
T16651 182-187 JJ denotes IL-17
T16650 179-181 IN denotes in
T16649 171-178 NN denotes pathway
T16648 161-170 VBG denotes signaling
T16647 147-160 JJ denotes intracellular
T16646 142-146 JJ denotes main
T16645 138-141 DT denotes the
T16644 135-137 VBZ denotes is
T16643 129-134 NNP denotes NF-κB
T16620 0-2 IN denotes In
T16642 124-128 IN denotes that
T16641 110-123 VBG denotes demonstrating
T16640 108-109 , denotes ,
T16639 107-108 -RRB- denotes )
T16638 102-107 VBN denotes shown
T16637 98-101 RB denotes not
T16636 93-97 NNS denotes data
T16635 92-93 -LRB- denotes (
T16634 82-91 JJ denotes anti-CD28
T16633 77-81 CC denotes plus
T16632 68-76 JJ denotes anti-CD3
T16631 63-67 IN denotes with
T16630 51-62 NN denotes stimulation
T16629 48-50 IN denotes by
T16628 38-47 VBN denotes activated
T16627 34-37 RB denotes not
T16626 30-33 VBD denotes was
T16625 22-29 NN denotes pathway
T16624 17-21 NNP denotes AP-1
T16623 13-16 DT denotes the
T16622 11-12 , denotes ,
T16621 3-11 NN denotes contrast
R9110 T16620 T16628 prep In,activated
R9111 T16621 T16620 pobj contrast,In
R9112 T16622 T16628 punct ",",activated
R9113 T16623 T16625 det the,pathway
R9114 T16624 T16625 compound AP-1,pathway
R9115 T16625 T16628 nsubjpass pathway,activated
R9116 T16626 T16628 auxpass was,activated
R9117 T16627 T16628 neg not,activated
R9118 T16628 T16628 ROOT activated,activated
R9119 T16629 T16628 agent by,activated
R9120 T16630 T16629 pobj stimulation,by
R9121 T16631 T16628 prep with,activated
R9122 T16632 T16636 amod anti-CD3,data
R9123 T16633 T16632 cc plus,anti-CD3
R9124 T16634 T16632 conj anti-CD28,anti-CD3
R9125 T16635 T16636 punct (,data
R9126 T16636 T16631 pobj data,with
R9127 T16637 T16638 neg not,shown
R9128 T16638 T16636 acl shown,data
R9129 T16639 T16636 punct ),data
R9130 T16640 T16628 punct ",",activated
R9131 T16641 T16628 advcl demonstrating,activated
R9132 T16642 T16644 mark that,is
R9133 T16643 T16644 nsubj NF-κB,is
R9134 T16644 T16641 ccomp is,demonstrating
R9135 T16645 T16649 det the,pathway
R9136 T16646 T16649 amod main,pathway
R9137 T16647 T16649 amod intracellular,pathway
R9138 T16648 T16649 amod signaling,pathway
R9139 T16649 T16644 attr pathway,is
R9140 T16650 T16649 prep in,pathway
R9141 T16651 T16652 amod IL-17,production
R9142 T16652 T16650 pobj production,in
R9143 T16653 T16649 prep by,pathway
R9144 T16654 T16655 amod activated,PBMC
R9145 T16655 T16653 pobj PBMC,by
R9146 T16656 T16649 prep from,pathway
R9147 T16657 T16656 pobj patients,from
R9148 T16658 T16649 prep with,pathway
R9149 T16659 T16658 pobj RA,with
R9150 T16660 T16628 punct .,activated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16257 129-134 Protein denotes NF-κB
T16256 82-91 Protein denotes anti-CD28
T16255 68-76 Protein denotes anti-CD3
T16254 17-21 Protein denotes AP-1

testone

Id Subject Object Predicate Lexical cue
T15531 202-211 Positive_regulation denotes activated
T15530 188-198 Gene_expression denotes production
T15519 182-187 Protein denotes IL-17
T15518 87-91 Protein denotes CD28
T15517 17-21 Protein denotes AP-1
R8548 T15519 T15530 themeOf IL-17,production