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PMC:1064895 / 20938-21142 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T15565 143-148 Protein denotes IL-17
T15564 123-130 Binding denotes binding
T15563 113-122 Positive_regulation denotes increased
T15562 86-90 Protein denotes CD28
T15541 143-148 Protein denotes IL-17
T15540 86-90 Protein denotes CD28
R8558 T15564 T15563 themeOf binding,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16339 123-130 Binding denotes binding
T16338 113-122 Positive_regulation denotes increased
T16323 86-90 Protein denotes CD28
T16322 143-148 Protein denotes IL-17
R8865 T16322 T16339 themeOf IL-17,binding
R8869 T16339 T16338 themeOf binding,increased

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T16804 123-130 Binding denotes binding
T16790 86-90 Protein denotes CD28
T16789 143-148 Protein denotes IL-17
R9193 T16789 T16804 themeOf IL-17,binding

biosemtest

Id Subject Object Predicate Lexical cue
T15815 146-151 UMLS/C1825592 denotes 17 pr
T15788 23-39 UMLS/C1518434 denotes clear extracts f
T15787 189-197 UMLS/C0332298 denotes trols (l
T15782 78-82 UMLS/C0332287 denotes us a
T15777 125-132 UMLS/C0243122 denotes nding o
T15772 115-124 UMLS/C0205217 denotes creased b
T15762 48-52 UMLS/C1321301 denotes MC s
T15755 189-197 UMLS/C0243148 denotes trols (l
T15738 189-197 UMLS/C1547100 denotes trols (l
T15735 125-132 UMLS/C1689898 denotes nding o
T15721 14-17 UMLS/C0349966 denotes g.
T15718 115-124 UMLS/C0442805 denotes creased b
T15717 115-124 UMLS/C0442808 denotes creased b
T15713 165-175 UMLS/C1707455 denotes parison wi
T15711 189-197 UMLS/C1550141 denotes trols (l
T15675 53-63 UMLS/C1948023 denotes imulated w
T15673 189-197 UMLS/C0009932 denotes trols (l
T15664 146-151 UMLS/C1522571 denotes 17 pr
T15653 146-151 UMLS/C0384648 denotes 17 pr
T15630 125-132 UMLS/C1167622 denotes nding o
T15627 146-151 UMLS/C1623218 denotes 17 pr
T15620 19-21 UMLS/C1553639 denotes ,
T15610 143-145 UMLS/C0319022 denotes IL
T15603 152-161 UMLS/C0086860 denotes moters in
T15596 125-132 UMLS/C1145667 denotes nding o
T15591 125-132 UMLS/C2349209 denotes nding o
T15584 189-197 UMLS/C1882979 denotes trols (l
T15808 189-197 UMLS/C2587213 denotes trols (l
T15791 199-203 UMLS/C1708639 denotes e 1)
T15790 94-98 UMLS/C1708639 denotes ne 2

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15991 202-203 -RRB- denotes )
T15990 201-202 CD denotes 1
T15989 196-200 NN denotes lane
T15988 195-196 -LRB- denotes (
T15987 186-194 NN denotes controls
T15986 183-185 IN denotes of
T15985 178-182 DT denotes that
T15984 173-177 IN denotes with
T15983 162-172 NN denotes comparison
T15982 159-161 IN denotes in
T15981 149-158 NN denotes promoters
T15980 143-148 NN denotes IL-17
T15979 140-142 TO denotes to
T15978 134-139 NN denotes NF-κB
T15977 131-133 IN denotes of
T15976 123-130 NN denotes binding
T15975 113-122 VB denotes increased
T15974 100-112 VB denotes demonstrated
T15973 98-99 -RRB- denotes )
T15972 97-98 CD denotes 2
T15971 92-96 NN denotes lane
T15970 91-92 -LRB- denotes (
T15969 81-90 NN denotes anti-CD28
T15968 76-80 CC denotes plus
T15967 67-75 JJ denotes anti-CD3
T15966 62-66 IN denotes with
T15965 51-61 VB denotes stimulated
T15964 46-50 NN denotes PBMC
T15963 43-45 NN denotes RA
T15962 38-42 IN denotes from
T15961 29-37 NN denotes extracts
T15960 21-28 JJ denotes nuclear
T15959 19-20 -COMMA- denotes ,
T15958 17-19 NNP denotes 7a
T15957 12-16 NNP denotes Fig.
T15956 9-11 IN denotes in
T15955 3-8 VB denotes shown
T15954 0-2 IN denotes As
R8644 T15955 T15954 arg2Of shown,As
R8645 T15955 T15956 arg1Of shown,in
R8646 T15958 T15956 arg2Of 7a,in
R8647 T15958 T15957 arg1Of 7a,Fig.
R8648 T15961 T15960 arg1Of extracts,nuclear
R8649 T15961 T15962 arg1Of extracts,from
R8650 T15961 T15974 arg1Of extracts,demonstrated
R8651 T15964 T15962 arg2Of PBMC,from
R8652 T15964 T15963 arg1Of PBMC,RA
R8653 T15964 T15965 arg2Of PBMC,stimulated
R8654 T15965 T15966 arg1Of stimulated,with
R8655 T15967 T15968 arg1Of anti-CD3,plus
R8656 T15968 T15966 arg2Of plus,with
R8657 T15968 T15970 arg1Of plus,(
R8658 T15969 T15968 arg2Of anti-CD28,plus
R8659 T15971 T15970 arg2Of lane,(
R8660 T15971 T15972 arg1Of lane,2
R8661 T15973 T15970 arg3Of ),(
R8662 T15974 T15954 arg1Of demonstrated,As
R8663 T15974 T15959 arg1Of demonstrated,","
R8664 T15974 T15982 arg1Of demonstrated,in
R8665 T15976 T15974 arg2Of binding,demonstrated
R8666 T15976 T15975 arg2Of binding,increased
R8667 T15976 T15977 arg1Of binding,of
R8668 T15976 T15979 arg1Of binding,to
R8669 T15978 T15977 arg2Of NF-κB,of
R8670 T15981 T15979 arg2Of promoters,to
R8671 T15981 T15980 arg1Of promoters,IL-17
R8672 T15983 T15982 arg2Of comparison,in
R8673 T15983 T15984 arg1Of comparison,with
R8674 T15985 T15984 arg2Of that,with
R8675 T15985 T15986 arg1Of that,of
R8676 T15987 T15986 arg2Of controls,of
R8677 T15987 T15988 arg1Of controls,(
R8678 T15989 T15988 arg2Of lane,(
R8679 T15989 T15990 arg1Of lane,1
R8680 T15991 T15988 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16157 143-148 Protein denotes IL-17
T16156 86-90 Protein denotes CD28

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16306 86-90 http://www.uniprot.org/uniprot/P10747 denotes CD28
T16302 72-75 http://www.uniprot.org/uniprot/P09693 denotes CD3
T16298 72-75 http://www.uniprot.org/uniprot/P07766 denotes CD3
T16294 72-75 http://www.uniprot.org/uniprot/P04234 denotes CD3
T16290 72-75 http://www.uniprot.org/uniprot/P20963 denotes CD3
T16286 143-148 http://www.uniprot.org/uniprot/Q16552 denotes IL-17

GO-MF

Id Subject Object Predicate Lexical cue
T16178 123-139 http://purl.obolibrary.org/obo/GO_0051059 denotes binding of NF-κB
T16175 123-130 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T16171 143-148 http://purl.obolibrary.org/obo/GO_0030367 denotes IL-17

sentences

Id Subject Object Predicate Lexical cue
T15819 0-204 Sentence denotes As shown in Fig. 7a, nuclear extracts from RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2) demonstrated increased binding of NF-κB to IL-17 promoters in comparison with that of controls (lane 1).
T149 0-204 Sentence denotes As shown in Fig. 7a, nuclear extracts from RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2) demonstrated increased binding of NF-κB to IL-17 promoters in comparison with that of controls (lane 1).

simple1

Id Subject Object Predicate Lexical cue
T16270 143-148 Protein denotes IL-17
T16269 86-90 Protein denotes CD28

DLUT931

Id Subject Object Predicate Lexical cue
T16367 113-122 Positive_regulation denotes increased
T16366 123-130 Binding denotes binding
T16352 86-90 Protein denotes CD28
T16351 143-148 Protein denotes IL-17
R8873 T16351 T16366 themeOf IL-17,binding
R8879 T16366 T16367 themeOf binding,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16772 113-158 Positive_regulation denotes increased binding of NF-κB to IL-17 promoters
T16771 21-158 Binding denotes nuclear extracts from RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2) demonstrated increased binding of NF-κB to IL-17 promoters
T16770 143-148 Protein denotes IL-17
T16735 43-45 Protein denotes RA
T16729 131-139 Protein denotes of NF-κB
T16727 140-158 Entity denotes to IL-17 promoters
T16726 12-15 Protein denotes Fig
T16721 81-99 Protein denotes anti-CD28 (lane 2)
T16752 43-99 Entity denotes RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2)
T16748 67-75 Protein denotes anti-CD3
T16746 21-99 Entity denotes nuclear extracts from RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2)
R9176 T16727 T16770 partOf to IL-17 promoters,IL-17
R9177 T16727 T16771 themeOf to IL-17 promoters,nuclear extracts from RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2) demonstrated increased binding of NF-κB to IL-17 promoters
R9178 T16729 T16771 themeOf of NF-κB,nuclear extracts from RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2) demonstrated increased binding of NF-κB to IL-17 promoters
R9189 T16771 T16772 themeOf nuclear extracts from RA PBMC stimulated with anti-CD3 plus anti-CD28 (lane 2) demonstrated increased binding of NF-κB to IL-17 promoters,increased binding of NF-κB to IL-17 promoters

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16498 203-204 . denotes .
T16497 202-203 -RRB- denotes )
T16496 201-202 CD denotes 1
T16495 196-200 NN denotes lane
T16494 195-196 -LRB- denotes (
T16493 186-194 NNS denotes controls
T16492 183-185 IN denotes of
T16491 178-182 DT denotes that
T16490 173-177 IN denotes with
T16489 162-172 NN denotes comparison
T16488 159-161 IN denotes in
T16487 149-158 NNS denotes promoters
T16486 143-148 NNP denotes IL-17
T16485 140-142 TO denotes to
T16484 134-139 NN denotes NF-κB
T16483 131-133 IN denotes of
T16482 123-130 JJ denotes binding
T16481 113-122 VBN denotes increased
T16480 100-112 VBD denotes demonstrated
T16479 98-99 -RRB- denotes )
T16478 97-98 CD denotes 2
T16477 92-96 NN denotes lane
T16476 91-92 -LRB- denotes (
T16475 81-90 JJ denotes anti-CD28
T16474 76-80 CC denotes plus
T16473 67-75 JJ denotes anti-CD3
T16472 62-66 IN denotes with
T16471 51-61 VBD denotes stimulated
T16470 46-50 NNP denotes PBMC
T16469 43-45 NNP denotes RA
T16468 38-42 IN denotes from
T16467 29-37 NNS denotes extracts
T16466 21-28 JJ denotes nuclear
T16465 19-20 , denotes ,
T16464 17-19 CD denotes 7a
T16463 12-16 NNP denotes Fig.
T16462 9-11 IN denotes in
T16461 3-8 VBN denotes shown
T16460 0-2 IN denotes As
R8950 T16460 T16461 mark As,shown
R8951 T16461 T16471 advcl shown,stimulated
R8952 T16462 T16461 prep in,shown
R8953 T16463 T16462 pobj Fig.,in
R8954 T16464 T16463 nummod 7a,Fig.
R8955 T16465 T16463 punct ",",Fig.
R8956 T16466 T16467 amod nuclear,extracts
R8957 T16467 T16471 nsubj extracts,stimulated
R8958 T16468 T16467 prep from,extracts
R8959 T16469 T16470 compound RA,PBMC
R8960 T16470 T16468 pobj PBMC,from
R8961 T16471 T16471 ROOT stimulated,stimulated
R8962 T16472 T16471 prep with,stimulated
R8963 T16473 T16472 pobj anti-CD3,with
R8964 T16474 T16473 cc plus,anti-CD3
R8965 T16475 T16473 conj anti-CD28,anti-CD3
R8966 T16476 T16477 punct (,lane
R8967 T16477 T16473 appos lane,anti-CD3
R8968 T16478 T16477 nummod 2,lane
R8969 T16479 T16471 punct ),stimulated
R8970 T16480 T16471 conj demonstrated,stimulated
R8971 T16481 T16482 amod increased,binding
R8972 T16482 T16480 dobj binding,demonstrated
R8973 T16483 T16482 prep of,binding
R8974 T16484 T16483 pobj NF-κB,of
R8975 T16485 T16484 prep to,NF-κB
R8976 T16486 T16487 compound IL-17,promoters
R8977 T16487 T16485 pobj promoters,to
R8978 T16488 T16480 prep in,demonstrated
R8979 T16489 T16488 pobj comparison,in
R8980 T16490 T16489 prep with,comparison
R8981 T16491 T16490 pobj that,with
R8982 T16492 T16491 prep of,that
R8983 T16493 T16492 pobj controls,of
R8984 T16494 T16495 punct (,lane
R8985 T16495 T16493 parataxis lane,controls
R8986 T16496 T16495 nummod 1,lane
R8987 T16497 T16495 punct ),lane
R8988 T16498 T16471 punct .,stimulated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16229 113-122 Positive_regulation denotes increased
T16228 113-122 Positive_regulation denotes increased
T16227 123-130 Binding denotes binding
T16226 123-130 Binding denotes binding
T16225 51-61 Positive_regulation denotes stimulated
T16224 51-61 Positive_regulation denotes stimulated
T16223 143-158 Protein denotes IL-17 promoters
T16222 134-139 Protein denotes NF-κB
T16221 81-90 Protein denotes anti-CD28
T16220 67-75 Protein denotes anti-CD3
T16219 43-50 Protein denotes RA PBMC
T16218 12-15 Protein denotes Fig
R8842 T16219 T16224 themeOf RA PBMC,stimulated
R8843 T16220 T16225 themeOf anti-CD3,stimulated
R8844 T16221 T16224 causeOf anti-CD28,stimulated
R8845 T16221 T16225 causeOf anti-CD28,stimulated
R8846 T16222 T16226 themeOf NF-κB,binding
R8847 T16222 T16227 themeOf NF-κB,binding
R8848 T16223 T16227 themeOf IL-17 promoters,binding
R8849 T16226 T16228 themeOf binding,increased
R8850 T16227 T16229 themeOf binding,increased

testone

Id Subject Object Predicate Lexical cue
T15524 123-130 Binding denotes binding
T15523 113-122 Positive_regulation denotes increased
T15509 143-148 Protein denotes IL-17
T15508 86-90 Protein denotes CD28
R8546 T15509 T15524 themeOf IL-17,binding
R8551 T15524 T15523 themeOf binding,increased