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PMC:1064895 / 20084-20259 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T14742 52-55 Protein denotes Akt
T14757 56-65 Positive_regulation denotes increased
T14756 52-55 Protein denotes Akt
T14755 37-51 Phosphorylation denotes phosphorylated
R8145 T14756 T14755 themeOf Akt,phosphorylated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15208 37-51 Phosphorylation denotes phosphorylated
T15207 56-65 Positive_regulation denotes increased
T15196 52-55 Protein denotes Akt
R8333 T15196 T15207 themeOf Akt,increased
R8334 T15196 T15208 themeOf Akt,phosphorylated
R8339 T15208 T15207 causeOf phosphorylated,increased

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15465 56-65 Positive_regulation denotes increased
T15464 37-51 Phosphorylation denotes phosphorylated
T15454 52-55 Protein denotes Akt
R8534 T15454 T15465 themeOf Akt,increased
R8535 T15454 T15464 themeOf Akt,phosphorylated

biosemtest

Id Subject Object Predicate Lexical cue
T14923 138-142 UMLS/C0444505 denotes ak a
T14922 17-23 UMLS/C1442458 denotes min o
T14917 149-152 UMLS/C1552937 denotes n,
T14908 11-16 UMLS/C0231290 denotes ter 3
T14906 86-92 UMLS/C2348382 denotes fect o
T14889 120-124 UMLS/C1708639 denotes ne 3
T14888 69-73 UMLS/C1708639 denotes ne 2
T14885 149-152 UMLS/C0439232 denotes n,
T14882 86-92 UMLS/C1280500 denotes fect o
T14880 149-152 UMLS/C0702093 denotes n,
T14874 11-16 UMLS/C0687676 denotes ter 3
T14864 96-106 UMLS/C1628982 denotes hibition b
T14860 110-118 UMLS/C0251991 denotes 294002 (
T14858 58-67 UMLS/C0205217 denotes creased (
T14838 27-37 UMLS/C1980044 denotes cubation,
T14818 96-106 UMLS/C0021467 denotes hibition b
T14816 96-106 UMLS/C0021469 denotes hibition b
T14808 162-164 UMLS/C0319022 denotes 1
T14806 17-23 UMLS/C0456693 denotes min o
T14792 128-135 UMLS/C0596012 denotes ached a
T14791 154-161 UMLS/C1517741 denotes sting t
T14785 54-57 UP/Q8INB9 denotes t i
T14780 27-37 UMLS/C1979572 denotes cubation,
T14772 58-67 UMLS/C0442805 denotes creased (
T14771 58-67 UMLS/C0442808 denotes creased (

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15054 91-93 IN denotes of
T15069 152-159 VB denotes lasting
T15068 150-151 -COMMA- denotes ,
T15067 147-150 NN denotes min
T15066 144-146 CD denotes 60
T15065 141-143 IN denotes at
T15064 136-140 NN denotes peak
T15063 134-135 DT denotes a
T15062 126-133 VB denotes reached
T15061 124-125 -RRB- denotes )
T15060 123-124 CD denotes 3
T15059 118-122 NN denotes lane
T15058 117-118 -LRB- denotes (
T15057 108-116 NN denotes LY294002
T15056 105-107 IN denotes by
T15055 94-104 NN denotes inhibition
T15053 84-90 NN denotes effect
T15052 80-83 DT denotes the
T15051 76-79 CC denotes and
T15050 74-75 -COMMA- denotes ,
T15049 73-74 -RRB- denotes )
T15048 72-73 CD denotes 2
T15047 67-71 NN denotes lane
T15046 66-67 -LRB- denotes (
T15045 56-65 VB denotes increased
T15044 52-55 NN denotes Akt
T15043 37-51 VB denotes phosphorylated
T15042 35-36 -COMMA- denotes ,
T15041 25-35 NN denotes incubation
T15040 22-24 IN denotes of
T15039 18-21 NN denotes min
T15038 15-17 CD denotes 30
T15037 9-14 IN denotes after
T15036 7-8 -COMMA- denotes ,
T15035 0-7 RB denotes However
T15072 171-174 NN denotes min
T15071 163-170 CD denotes 120–240
T15070 160-162 TO denotes to
R8234 T15039 T15037 arg2Of min,after
R8235 T15039 T15038 arg1Of min,30
R8236 T15039 T15040 arg1Of min,of
R8237 T15041 T15040 arg2Of incubation,of
R8238 T15044 T15043 arg2Of Akt,phosphorylated
R8239 T15044 T15045 arg1Of Akt,increased
R8240 T15045 T15046 arg1Of increased,(
R8241 T15045 T15051 arg1Of increased,and
R8242 T15047 T15046 arg2Of lane,(
R8243 T15047 T15048 arg1Of lane,2
R8244 T15049 T15046 arg3Of ),(
R8245 T15051 T15035 arg1Of and,However
R8246 T15051 T15036 arg1Of and,","
R8247 T15051 T15037 arg1Of and,after
R8248 T15051 T15042 arg1Of and,","
R8249 T15051 T15050 arg1Of and,","
R8250 T15053 T15052 arg1Of effect,the
R8251 T15053 T15054 arg1Of effect,of
R8252 T15053 T15056 arg1Of effect,by
R8253 T15053 T15062 arg1Of effect,reached
R8254 T15053 T15069 arg1Of effect,lasting
R8255 T15055 T15054 arg2Of inhibition,of
R8256 T15057 T15056 arg2Of LY294002,by
R8257 T15057 T15058 arg1Of LY294002,(
R8258 T15059 T15058 arg2Of lane,(
R8259 T15059 T15060 arg1Of lane,3
R8260 T15061 T15058 arg3Of ),(
R8261 T15062 T15051 arg2Of reached,and
R8262 T15062 T15065 arg1Of reached,at
R8263 T15062 T15068 arg1Of reached,","
R8264 T15062 T15069 modOf reached,lasting
R8265 T15064 T15062 arg2Of peak,reached
R8266 T15064 T15063 arg1Of peak,a
R8267 T15067 T15065 arg2Of min,at
R8268 T15067 T15066 arg1Of min,60
R8269 T15069 T15070 arg1Of lasting,to
R8270 T15072 T15070 arg2Of min,to
R8271 T15072 T15071 arg1Of min,120–240

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T15127 52-55 Protein denotes Akt

sentences

Id Subject Object Predicate Lexical cue
T14931 0-175 Sentence denotes However, after 30 min of incubation, phosphorylated Akt increased (lane 2), and the effect of inhibition by LY294002 (lane 3) reached a peak at 60 min, lasting to 120–240 min.
T144 0-175 Sentence denotes However, after 30 min of incubation, phosphorylated Akt increased (lane 2), and the effect of inhibition by LY294002 (lane 3) reached a peak at 60 min, lasting to 120–240 min.

simple1

Id Subject Object Predicate Lexical cue
T15171 52-55 Protein denotes Akt

DLUT931

Id Subject Object Predicate Lexical cue
T15227 56-65 Positive_regulation denotes increased
T15226 37-51 Phosphorylation denotes phosphorylated
T15215 52-55 Protein denotes Akt
R8344 T15215 T15226 themeOf Akt,phosphorylated
R8345 T15215 T15227 themeOf Akt,increased
R8353 T15226 T15227 themeOf phosphorylated,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15427 52-75 Protein denotes Akt increased (lane 2),
T15425 105-125 Entity denotes by LY294002 (lane 3)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15352 174-175 . denotes .
T15351 171-174 NN denotes min
T15350 167-170 CD denotes 240
T15349 163-166 CD denotes 120
T15348 160-162 TO denotes to
T15347 152-159 VBG denotes lasting
T15346 150-151 , denotes ,
T15345 147-150 NN denotes min
T15344 144-146 CD denotes 60
T15343 141-143 IN denotes at
T15342 136-140 NN denotes peak
T15341 134-135 DT denotes a
T15340 126-133 VBD denotes reached
T15339 124-125 -RRB- denotes )
T15338 123-124 CD denotes 3
T15337 118-122 NN denotes lane
T15336 117-118 -LRB- denotes (
T15335 108-116 NNP denotes LY294002
T15334 105-107 IN denotes by
T15333 94-104 NN denotes inhibition
T15332 91-93 IN denotes of
T15331 84-90 NN denotes effect
T15330 80-83 DT denotes the
T15329 76-79 CC denotes and
T15328 74-75 , denotes ,
T15327 73-74 -RRB- denotes )
T15326 72-73 CD denotes 2
T15325 67-71 NN denotes lane
T15324 66-67 -LRB- denotes (
T15323 56-65 VBD denotes increased
T15322 52-55 NNP denotes Akt
T15321 37-51 VBN denotes phosphorylated
T15320 35-36 , denotes ,
T15319 25-35 NN denotes incubation
T15318 22-24 IN denotes of
T15317 18-21 NN denotes min
T15316 15-17 CD denotes 30
T15315 9-14 IN denotes after
T15314 7-8 , denotes ,
T15313 0-7 RB denotes However
R8454 T15339 T15337 punct ),lane
R8455 T15340 T15323 conj reached,increased
R8456 T15341 T15342 det a,peak
R8457 T15342 T15340 dobj peak,reached
R8458 T15343 T15340 prep at,reached
R8459 T15344 T15345 nummod 60,min
R8460 T15345 T15343 pobj min,at
R8461 T15346 T15340 punct ",",reached
R8462 T15347 T15340 advcl lasting,reached
R8463 T15348 T15347 prep to,lasting
R8464 T15349 T15350 quantmod 120,240
R8465 T15350 T15351 nummod 240,min
R8466 T15351 T15348 pobj min,to
R8428 T15313 T15323 advmod However,increased
R8429 T15314 T15323 punct ",",increased
R8430 T15315 T15323 prep after,increased
R8431 T15316 T15317 nummod 30,min
R8432 T15317 T15315 pobj min,after
R8433 T15318 T15317 prep of,min
R8434 T15319 T15318 pobj incubation,of
R8435 T15320 T15323 punct ",",increased
R8436 T15321 T15322 compound phosphorylated,Akt
R8437 T15322 T15323 nsubj Akt,increased
R8438 T15323 T15323 ROOT increased,increased
R8439 T15324 T15325 punct (,lane
R8440 T15325 T15323 dobj lane,increased
R8441 T15326 T15325 nummod 2,lane
R8442 T15327 T15325 punct ),lane
R8443 T15328 T15323 punct ",",increased
R8444 T15329 T15323 cc and,increased
R8445 T15330 T15331 det the,effect
R8446 T15331 T15340 nsubj effect,reached
R8447 T15332 T15331 prep of,effect
R8448 T15333 T15332 pobj inhibition,of
R8449 T15334 T15331 prep by,effect
R8450 T15335 T15334 pobj LY294002,by
R8451 T15336 T15337 punct (,lane
R8452 T15337 T15335 appos lane,LY294002
R8453 T15338 T15337 nummod 3,lane
R8467 T15352 T15340 punct .,reached

testone

Id Subject Object Predicate Lexical cue
T14733 56-65 Positive_regulation denotes increased
T14732 37-51 Phosphorylation denotes phosphorylated
T14722 52-55 Protein denotes Akt
R8135 T14722 T14732 themeOf Akt,phosphorylated