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PMC:1064895 / 14951-15296 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
15642134-9187742-4202027 341-343 9187742 denotes 21

biosemtest

Id Subject Object Predicate Lexical cue
T10770 280-286 UMLS/C0449788 denotes umber
T10769 171-179 UMLS/C1442770 denotes 24 hours
T10768 73-75 UMLS/C0319022 denotes to
T10767 171-179 UMLS/C0456696 denotes 24 hours
T10766 171-179 UMLS/C0439584 denotes 24 hours
T10765 150-155 UMLS/C0687676 denotes After
T10764 156-166 UMLS/C1979572 denotes incubation
T10763 214-224 UMLS/C1549488 denotes percentage
T10762 109-118 UMLS/C1511636 denotes cytotoxic
T10761 57-63 UMLS/C0025664 denotes method
T10760 57-63 UMLS/C0025663 denotes method
T10759 196-205 UMLS/C1512335 denotes harvested
T10758 264-271 UMLS/C1705501 denotes formula
T10757 19-25 UMLS/C0005507 denotes assays
T10755 214-224 UMLS/C0439165 denotes percentage
T10754 89-98 UMLS/C0035647 denotes potential
T10821 334-339 UMLS/C1704653 denotes ells)
T10820 185-190 UMLS/C1704653 denotes cells
T10819 143-148 UMLS/C1704653 denotes cells
T10818 57-63 UMLS/C0449851 denotes method
T10817 214-224 UMLS/C1561533 denotes percentage
T10816 102-108 UMLS/C1552596 denotes direct
T10815 280-286 UMLS/C1709287 denotes umber
T10814 290-302 UMLS/C1441322 denotes iable cells/
T10813 156-166 UMLS/C1980044 denotes incubation
T10812 297-309 UMLS/C0007584 denotes ells/number
T10811 109-118 UMLS/C0677881 denotes cytotoxic
T10810 129-139 UMLS/C0243077 denotes inhibitors
T10809 19-25 UMLS/C0243073 denotes assays
T10807 318-324 UMLS/C0443348 denotes iable
T10806 76-84 UMLS/C0220825 denotes evaluate
T10805 244-254 UMLS/C1443182 denotes calculated
T10804 334-339 UMLS/C1136359 denotes ells)
T10803 185-190 UMLS/C1136359 denotes cells
T10802 143-148 UMLS/C1136359 denotes cells
T10801 19-25 UMLS/C1510438 denotes assays
T10799 150-155 UMLS/C0231290 denotes After
T10798 119-125 UMLS/C2348382 denotes effect
T10797 31-42 UMLS/C0041213 denotes trypan blue
T10795 43-46 UMLS/C0013343 denotes dye
T10793 102-108 UMLS/C0439851 denotes direct
T10792 102-108 UMLS/C1947931 denotes direct
T10791 334-339 UMLS/C1948049 denotes ells)
T10790 185-190 UMLS/C1948049 denotes cells
T10789 143-148 UMLS/C1948049 denotes cells
T10788 129-139 UMLS/C1999216 denotes inhibitors
T10787 280-286 UMLS/C1554106 denotes umber
T10786 334-339 UMLS/C0007634 denotes ells)
T10785 185-190 UMLS/C0007634 denotes cells
T10784 143-148 UMLS/C0007634 denotes cells
T10783 334-339 UMLS/C1269647 denotes ells)
T10782 185-190 UMLS/C1269647 denotes cells
T10781 143-148 UMLS/C1269647 denotes cells
T10780 225-239 UMLS/C0007620 denotes cell viability
T10779 4-18 UMLS/C0007620 denotes cell viability
T10777 119-125 UMLS/C1280500 denotes effect
T10776 280-286 UMLS/C0237753 denotes umber
T10775 244-254 UMLS/C1441506 denotes calculated
T10774 244-254 UMLS/C0444686 denotes calculated
T10773 264-271 UMLS/C0489829 denotes formula
T10772 47-56 UMLS/C0680251 denotes exclusion

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10895 343-344 -RRB- denotes ]
T10894 341-343 CD denotes 21
T10893 340-341 -LRB- denotes [
T10892 338-339 -RRB- denotes )
T10891 333-338 NN denotes cells
T10890 328-332 JJ denotes dead
T10889 324-327 CC denotes and
T10888 317-323 JJ denotes viable
T10887 312-316 CC denotes both
T10886 309-311 IN denotes of
T10885 296-308 NN denotes cells/number
T10884 289-295 JJ denotes viable
T10883 286-288 IN denotes of
T10882 279-285 NN denotes number
T10881 278-279 -LRB- denotes (
T10880 276-277 NN denotes ×
T10879 272-275 CD denotes 100
T10878 264-271 NN denotes formula
T10877 260-263 DT denotes the
T10876 255-259 IN denotes with
T10875 244-254 VB denotes calculated
T10874 240-243 VB denotes was
T10873 230-239 NN denotes viability
T10872 225-229 NN denotes cell
T10871 214-224 NN denotes percentage
T10870 210-213 DT denotes the
T10869 206-209 CC denotes and
T10868 196-205 VB denotes harvested
T10867 191-195 VB denotes were
T10866 185-190 NN denotes cells
T10865 181-184 DT denotes the
T10864 179-180 -COMMA- denotes ,
T10863 174-179 NN denotes hours
T10862 171-173 CD denotes 24
T10861 167-170 IN denotes for
T10860 156-166 NN denotes incubation
T10859 150-155 IN denotes After
T10858 143-148 NN denotes cells
T10857 140-142 IN denotes on
T10856 129-139 NN denotes inhibitors
T10855 126-128 IN denotes of
T10854 119-125 NN denotes effect
T10853 109-118 JJ denotes cytotoxic
T10852 102-108 JJ denotes direct
T10851 99-101 IN denotes of
T10850 89-98 NN denotes potential
T10849 85-88 DT denotes the
T10848 76-84 VB denotes evaluate
T10847 73-75 TO denotes to
T10846 68-72 VB denotes used
T10845 64-67 VB denotes was
T10844 57-63 NN denotes method
T10843 47-56 NN denotes exclusion
T10842 43-46 NN denotes dye
T10841 38-42 JJ denotes blue
T10840 31-37 NN denotes trypan
T10839 27-30 DT denotes the
T10838 25-26 -COMMA- denotes ,
T10837 19-25 NN denotes assays
T10836 9-18 NN denotes viability
T10835 4-8 NN denotes cell
T10834 0-3 IN denotes For
R5792 T10837 T10834 arg2Of assays,For
R5793 T10837 T10835 arg1Of assays,cell
R5794 T10837 T10836 arg1Of assays,viability
R5795 T10844 T10839 arg1Of method,the
R5796 T10844 T10840 arg1Of method,trypan
R5797 T10844 T10841 arg1Of method,blue
R5798 T10844 T10842 arg1Of method,dye
R5799 T10844 T10843 arg1Of method,exclusion
R5800 T10844 T10845 arg1Of method,was
R5801 T10844 T10846 arg2Of method,used
R5802 T10846 T10834 arg1Of used,For
R5803 T10846 T10838 arg1Of used,","
R5804 T10846 T10845 arg2Of used,was
R5805 T10848 T10846 arg3Of evaluate,used
R5806 T10848 T10847 arg1Of evaluate,to
R5807 T10850 T10848 arg2Of potential,evaluate
R5808 T10850 T10849 arg1Of potential,the
R5809 T10850 T10851 arg1Of potential,of
R5810 T10854 T10851 arg2Of effect,of
R5811 T10854 T10852 arg1Of effect,direct
R5812 T10854 T10853 arg1Of effect,cytotoxic
R5813 T10854 T10855 arg1Of effect,of
R5814 T10854 T10857 arg1Of effect,on
R5815 T10856 T10855 arg2Of inhibitors,of
R5816 T10858 T10857 arg2Of cells,on
R5817 T10860 T10859 arg2Of incubation,After
R5818 T10860 T10861 arg1Of incubation,for
R5819 T10863 T10861 arg2Of hours,for
R5820 T10863 T10862 arg1Of hours,24
R5821 T10866 T10865 arg1Of cells,the
R5822 T10866 T10867 arg1Of cells,were
R5823 T10866 T10868 arg2Of cells,harvested
R5824 T10868 T10867 arg2Of harvested,were
R5825 T10868 T10869 arg1Of harvested,and
R5826 T10869 T10859 arg1Of and,After
R5827 T10869 T10864 arg1Of and,","
R5828 T10873 T10870 arg1Of viability,the
R5829 T10873 T10871 arg1Of viability,percentage
R5830 T10873 T10872 arg1Of viability,cell
R5831 T10873 T10874 arg1Of viability,was
R5832 T10873 T10875 arg2Of viability,calculated
R5833 T10875 T10869 arg2Of calculated,and
R5834 T10875 T10874 arg2Of calculated,was
R5835 T10875 T10876 arg1Of calculated,with
R5836 T10875 T10893 arg1Of calculated,[
R5837 T10880 T10876 arg2Of ×,with
R5838 T10880 T10877 arg1Of ×,the
R5839 T10880 T10878 arg1Of ×,formula
R5840 T10880 T10879 arg1Of ×,100
R5841 T10880 T10881 arg1Of ×,(
R5842 T10882 T10881 arg2Of number,(
R5843 T10882 T10883 arg1Of number,of
R5844 T10885 T10883 arg2Of cells/number,of
R5845 T10885 T10884 arg1Of cells/number,viable
R5846 T10885 T10886 arg1Of cells/number,of
R5847 T10888 T10889 arg1Of viable,and
R5848 T10889 T10887 arg1Of and,both
R5849 T10890 T10889 arg2Of dead,and
R5850 T10891 T10886 arg2Of cells,of
R5851 T10891 T10888 arg1Of cells,viable
R5852 T10891 T10890 arg1Of cells,dead
R5853 T10892 T10881 arg3Of ),(
R5854 T10894 T10893 arg2Of 21,[
R5855 T10895 T10893 arg3Of ],[

GO-CC

Id Subject Object Predicate Lexical cue
T10900 333-338 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T10899 296-301 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T10898 225-229 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T10897 4-8 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T10824 150-345 Sentence denotes After incubation for 24 hours, the cells were harvested and the percentage cell viability was calculated with the formula 100 × (number of viable cells/number of both viable and dead cells) [21].
T10823 0-149 Sentence denotes For cell viability assays, the trypan blue dye exclusion method was used to evaluate the potential of direct cytotoxic effect of inhibitors on cells.
T109 0-149 Sentence denotes For cell viability assays, the trypan blue dye exclusion method was used to evaluate the potential of direct cytotoxic effect of inhibitors on cells.
T110 150-345 Sentence denotes After incubation for 24 hours, the cells were harvested and the percentage cell viability was calculated with the formula 100 × (number of viable cells/number of both viable and dead cells) [21].

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10984 181-205 Binding denotes the cells were harvested
T10982 286-301 Entity denotes of viable cells
T10981 309-338 Entity denotes of both viable and dead cells
T10980 99-148 Entity denotes of direct cytotoxic effect of inhibitors on cells
T10979 31-42 Entity denotes trypan blue
T10978 140-148 Entity denotes on cells
T10977 126-139 Entity denotes of inhibitors
T10976 181-190 Entity denotes the cells
T10974 4-8 Entity denotes cell

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10973 344-345 . denotes .
T10972 343-344 NNP denotes ]
T10971 341-343 CD denotes 21
T10970 340-341 NNP denotes [
T10969 338-339 -RRB- denotes )
T10968 333-338 NNS denotes cells
T10967 328-332 JJ denotes dead
T10966 324-327 CC denotes and
T10965 317-323 JJ denotes viable
T10964 312-316 DT denotes both
T10963 309-311 IN denotes of
T10962 296-308 NN denotes cells/number
T10961 289-295 JJ denotes viable
T10960 286-288 IN denotes of
T10959 279-285 NN denotes number
T10958 278-279 -LRB- denotes (
T10957 276-277 NN denotes ×
T10956 272-275 CD denotes 100
T10955 264-271 NN denotes formula
T10954 260-263 DT denotes the
T10953 255-259 IN denotes with
T10952 244-254 VBN denotes calculated
T10951 240-243 VBD denotes was
T10950 230-239 NN denotes viability
T10949 225-229 NN denotes cell
T10948 214-224 NN denotes percentage
T10947 210-213 DT denotes the
T10946 206-209 CC denotes and
T10945 196-205 VBN denotes harvested
T10944 191-195 VBD denotes were
T10943 185-190 NNS denotes cells
T10942 181-184 DT denotes the
T10941 179-180 , denotes ,
T10940 174-179 NNS denotes hours
T10939 171-173 CD denotes 24
T10938 167-170 IN denotes for
T10937 156-166 NN denotes incubation
T10936 150-155 IN denotes After
T10935 148-149 . denotes .
T10934 143-148 NNS denotes cells
T10933 140-142 IN denotes on
T10932 129-139 NNS denotes inhibitors
T10931 126-128 IN denotes of
T10930 119-125 NN denotes effect
T10929 109-118 JJ denotes cytotoxic
T10928 102-108 JJ denotes direct
T10927 99-101 IN denotes of
T10926 89-98 NN denotes potential
T10925 85-88 DT denotes the
T10924 76-84 VB denotes evaluate
T10923 73-75 TO denotes to
T10922 68-72 VBN denotes used
T10921 64-67 VBD denotes was
T10920 57-63 NN denotes method
T10919 47-56 NN denotes exclusion
T10918 43-46 NN denotes dye
T10917 38-42 JJ denotes blue
T10916 31-37 NN denotes trypan
T10915 27-30 DT denotes the
T10914 25-26 , denotes ,
T10913 19-25 NNS denotes assays
T10912 9-18 NN denotes viability
T10911 4-8 NN denotes cell
T10910 0-3 IN denotes For
R5865 T10910 T10922 prep For,used
R5866 T10911 T10912 compound cell,viability
R5867 T10912 T10913 compound viability,assays
R5868 T10913 T10910 pobj assays,For
R5869 T10914 T10922 punct ",",used
R5870 T10915 T10920 det the,method
R5871 T10916 T10920 amod trypan,method
R5872 T10917 T10918 amod blue,dye
R5873 T10918 T10919 compound dye,exclusion
R5874 T10919 T10920 compound exclusion,method
R5875 T10920 T10922 nsubjpass method,used
R5876 T10921 T10922 auxpass was,used
R5877 T10922 T10922 ROOT used,used
R5878 T10923 T10924 aux to,evaluate
R5879 T10924 T10922 xcomp evaluate,used
R5880 T10925 T10926 det the,potential
R5881 T10926 T10924 dobj potential,evaluate
R5882 T10927 T10926 prep of,potential
R5883 T10928 T10930 amod direct,effect
R5884 T10929 T10930 amod cytotoxic,effect
R5885 T10930 T10927 pobj effect,of
R5886 T10931 T10930 prep of,effect
R5887 T10932 T10931 pobj inhibitors,of
R5888 T10933 T10932 prep on,inhibitors
R5889 T10934 T10933 pobj cells,on
R5890 T10935 T10922 punct .,used
R5891 T10936 T10945 prep After,harvested
R5892 T10937 T10936 pobj incubation,After
R5893 T10938 T10937 prep for,incubation
R5894 T10939 T10940 nummod 24,hours
R5895 T10940 T10938 pobj hours,for
R5896 T10941 T10945 punct ",",harvested
R5897 T10942 T10943 det the,cells
R5898 T10943 T10945 nsubjpass cells,harvested
R5899 T10944 T10945 auxpass were,harvested
R5900 T10945 T10945 ROOT harvested,harvested
R5901 T10946 T10945 cc and,harvested
R5902 T10947 T10950 det the,viability
R5903 T10948 T10949 compound percentage,cell
R5904 T10949 T10950 compound cell,viability
R5905 T10950 T10952 nsubjpass viability,calculated
R5906 T10951 T10952 auxpass was,calculated
R5907 T10952 T10945 conj calculated,harvested
R5908 T10953 T10952 prep with,calculated
R5909 T10954 T10955 det the,formula
R5910 T10955 T10953 pobj formula,with
R5911 T10956 T10957 nummod 100,×
R5912 T10957 T10972 npadvmod ×,]
R5913 T10958 T10959 punct (,number
R5914 T10959 T10972 nmod number,]
R5915 T10960 T10959 prep of,number
R5916 T10961 T10962 amod viable,cells/number
R5917 T10962 T10960 pobj cells/number,of
R5918 T10963 T10962 prep of,cells/number
R5919 T10964 T10965 preconj both,viable
R5920 T10965 T10968 amod viable,cells
R5921 T10966 T10965 cc and,viable
R5922 T10967 T10965 conj dead,viable
R5923 T10968 T10963 pobj cells,of
R5924 T10969 T10959 punct ),number
R5925 T10970 T10972 quantmod [,]
R5926 T10971 T10972 nummod 21,]
R5927 T10972 T10952 conj ],calculated
R5928 T10973 T10952 punct .,calculated