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PMC:1064895 / 12555-13752 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T9217 749-754 Protein denotes IκB-α
T9216 741-744 Protein denotes Akt
T9215 726-740 Phosphorylation denotes phosphorylated
T9214 721-724 Protein denotes Akt
T9210 749-754 Protein denotes IκB-α
T9209 741-744 Protein denotes Akt
T9208 721-724 Protein denotes Akt
R4828 T9216 T9215 themeOf Akt,phosphorylated
R4829 T9217 T9215 themeOf IκB-α,phosphorylated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9669 726-740 Phosphorylation denotes phosphorylated
T9667 749-754 Protein denotes IκB-α
T9666 741-744 Protein denotes Akt
T9665 721-724 Protein denotes Akt
R5071 T9666 T9669 themeOf Akt,phosphorylated
R5072 T9667 T9669 themeOf IκB-α,phosphorylated

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9967 726-740 Phosphorylation denotes phosphorylated
T9965 749-754 Protein denotes IκB-α
T9964 741-744 Protein denotes Akt
T9963 721-724 Protein denotes Akt
R5320 T9964 T9967 themeOf Akt,phosphorylated
R5321 T9965 T9967 themeOf IκB-α,phosphorylated

biosemtest

Id Subject Object Predicate Lexical cue
T9361 1062-1069 UMLS/C1548982 denotes hybridi
T9360 897-904 UMLS/C1548982 denotes our tim
T9359 1022-1028 UMLS/C1442450 denotes room
T9358 118-124 UMLS/C1442450 denotes ur, wh
T9357 132-144 UMLS/C1881488 denotes lysates wer
T9356 534-541 UMLS/C1705493 denotes n hybri
T9355 397-404 UMLS/C2347026 denotes les wer
T9354 1154-1157 UMLS/C0812225 denotes ype
T9353 1154-1157 UMLS/C1704742 denotes ype
T9352 628-636 UMLS/C0041415 denotes 20 in Tr
T9351 270-273 UMLS/C1552937 denotes Pr
T9350 1082-1087 UMLS/C0175723 denotes e det
T9349 972-982 UMLS/C0003241 denotes s were add
T9348 708-718 UMLS/C0003241 denotes dies again
T9347 174-179 UMLS/C1136359 denotes s by
T9346 397-404 UMLS/C0870078 denotes les wer
T9345 433-437 UMLS/C0013862 denotes nd t
T9344 1050-1055 UMLS/C0231290 denotes -T wa
T9343 891-896 UMLS/C0231290 denotes hing
T9342 97-102 UMLS/C0231290 denotes r inc
T9341 951-961 UMLS/C0301869 denotes d secondar
T9340 593-605 UMLS/C0349375 denotes d milk in TB
T9339 686-693 UMLS/C1292425 denotes s, then
T9338 442-453 UMLS/C1547239 denotes erred to a
T9337 174-179 UMLS/C1948049 denotes s by
T9336 275-297 UMLS/C0427716 denotes ein concentrations in
T9335 836-839 UP/P02769 denotes T,
T9334 1144-1153 UMLS/C1511790 denotes kit and
T9333 1093-1101 UMLS/C1511790 denotes with the
T9332 174-179 UMLS/C0007634 denotes s by
T9331 1111-1119 UMLS/C1999177 denotes chemilum
T9330 542-555 UMLS/C0020202 denotes ization, memb
T9329 270-273 UMLS/C0439232 denotes Pr
T9328 410-419 UMLS/C1881713 denotes rated by
T9327 988-993 UMLS/C1524062 denotes allo
T9326 852-857 UMLS/C1524062 denotes d inc
T9325 410-419 UMLS/C0443299 denotes rated by
T9324 836-839 UMLS/C0005902 denotes T,
T9323 270-273 UMLS/C0702093 denotes Pr
T9322 815-822 UMLS/C1948037 denotes 1:1000
T9321 275-297 UMLS/C1304757 denotes ein concentrations in
T9320 223-234 UMLS/C0993864 denotes rifuged at
T9319 397-404 UMLS/C0370003 denotes les wer
T9318 1093-1101 UMLS/C0442726 denotes with the
T9317 205-210 UMLS/C0024348 denotes s buf
T9316 442-453 UMLS/C0348011 denotes erred to a
T9315 1050-1055 UMLS/C0687676 denotes -T wa
T9314 891-896 UMLS/C0687676 denotes hing
T9313 97-102 UMLS/C0687676 denotes r inc
T9312 542-555 UMLS/C0028602 denotes ization, memb
T9311 442-453 UMLS/C1555583 denotes erred to a
T9310 1111-1119 UMLS/C2349975 denotes chemilum
T9309 700-707 UMLS/C0205225 denotes y antib
T9308 836-839 UMLS/C0036774 denotes T,
T9307 150-158 UMLS/C1521827 denotes ared fro
T9305 78-86 UMLS/C0251991 denotes 94002 (2
T9304 55-63 UMLS/C0392148 denotes sence or
T9303 459-473 UMLS/C0600190 denotes ellulose membr
T9302 910-915 UMLS/C1704250 denotes h TBS
T9301 962-971 UMLS/C0175668 denotes antibodi
T9300 836-839 UMLS/C0487992 denotes T,
T9299 2-6 UMLS/C1321301 denotes MC w
T9298 615-621 UMLS/C0006353 denotes (0.1%
T9297 211-217 UMLS/C0006353 denotes er, an
T9296 836-839 UMLS/C1511233 denotes T,
T9295 779-789 UMLS/C0039421 denotes gy Inc., B
T9294 700-707 UMLS/C0439631 denotes y antib
T9293 951-961 UMLS/C0522529 denotes d secondar
T9292 442-453 UMLS/C1540850 denotes erred to a
T9291 686-693 UMLS/C1547059 denotes s, then
T9290 962-971 UMLS/C1522484 denotes antibodi
T9289 174-179 UMLS/C1704653 denotes s by
T9288 442-453 UMLS/C0040671 denotes erred to a
T9287 323-333 UMLS/C0521095 denotes rmined wit
T9286 352-358 UMLS/C0449851 denotes od (Bi
T9285 1120-1137 UMLS/C0162524 denotes nescence (ECL) de
T9284 972-982 UMLS/C0021027 denotes s were add
T9283 708-718 UMLS/C0021027 denotes dies again
T9282 1082-1087 UMLS/C0439645 denotes e det
T9281 654-660 UMLS/C0036082 denotes ) at r
T9280 521-527 UMLS/C0038995 denotes ). For
T9279 103-113 UMLS/C1980044 denotes bation for
T9278 910-915 UMLS/C1548318 denotes h TBS
T9277 962-971 UMLS/C0027627 denotes antibodi
T9276 67-74 UMLS/C0424530 denotes ence of
T9275 809-812 UMLS/C0041703 denotes lut
T9274 383-386 UMLS/C0041703 denotes . P
T9273 1009-1017 UMLS/C1439852 denotes for 1 ho
T9272 862-871 UMLS/C1439852 denotes d overnig
T9271 12-21 UMLS/C1439852 denotes cubated w
T9270 988-993 UMLS/C1720086 denotes allo
T9269 852-857 UMLS/C1720086 denotes d inc
T9268 174-179 UMLS/C1269647 denotes s by
T9267 126-131 UMLS/C0444667 denotes e cel
T9266 1120-1137 UMLS/C1450278 denotes nescence (ECL) de
T9265 1139-1142 UMLS/C1332684 denotes cti
T9264 910-915 UMLS/C1547403 denotes h TBS
T9263 998-1005 UMLS/C0683607 denotes o incub
T9262 910-915 UMLS/C1632851 denotes h TBS
T9261 55-63 UMLS/C0150312 denotes sence or
T9260 1006-1008 UMLS/C0319022 denotes te
T9259 454-456 UMLS/C0319022 denotes it
T9258 815-822 UMLS/C1720119 denotes 1:1000
T9257 872-881 UMLS/C0439583 denotes t at 4°C.
T9256 1176-1184 UMLS/C0034760 denotes (Amersha
T9255 910-915 UMLS/C0392761 denotes h TBS
T9254 972-982 UMLS/C1621287 denotes s were add
T9253 708-718 UMLS/C1621287 denotes dies again
T9252 103-113 UMLS/C1979572 denotes bation for
T9251 747-750 UP/Q8INB9 denotes d I
T9250 727-730 UP/Q8INB9 denotes hos
T9247 719-726 UMLS/C0521124 denotes t Akt,
T9246 988-993 UMLS/C1883712 denotes allo
T9245 852-857 UMLS/C1883712 denotes d inc
T9244 397-404 UMLS/C0441621 denotes les wer
T9243 1139-1142 UP/P83410 denotes cti
T9242 352-358 UMLS/C0025664 denotes od (Bi
T9241 352-358 UMLS/C0025663 denotes od (Bi
T9240 910-915 UMLS/C0449243 denotes h TBS
T9239 910-915 UMLS/C0040223 denotes h TBS
T9238 1139-1142 UP/P55797 denotes cti
T9237 1154-1157 UMLS/C1705212 denotes ype
T9236 1082-1087 UMLS/C0185014 denotes e det
T9235 442-453 UMLS/C0728827 denotes erred to a
T9234 67-74 UMLS/C0332197 denotes ence of
T9233 305-317 UMLS/C1550101 denotes rnatants wer
T9232 1154-1157 UMLS/C1690540 denotes ype
T9231 905-909 UMLS/C0205450 denotes s wi
T9230 764-778 UMLS/C0037083 denotes naling Technol
T9229 67-74 UMLS/C1689985 denotes ence of
T9228 928-950 UMLS/C0019941 denotes sh peroxidase-conjugat
T9227 389-396 UMLS/C0033684 denotes ein sam
T9226 442-453 UMLS/C1705822 denotes erred to a
T9225 1154-1157 UMLS/C1553450 denotes ype
T9224 1032-1048 UMLS/C2348236 denotes erature. After T
T9223 665-681 UMLS/C2348236 denotes emperature for 2
T9222 962-971 UMLS/C0205436 denotes antibodi
T9221 410-419 UMLS/C0086972 denotes rated by
T9220 442-453 UMLS/C1299988 denotes erred to a
T9219 205-210 UMLS/C1536403 denotes s buf

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9604 1195-1196 -RRB- denotes )
T9603 1186-1195 NNP denotes Pharmacia
T9602 1177-1185 NNP denotes Amersham
T9601 1176-1177 -LRB- denotes (
T9600 1167-1175 NN denotes reagents
T9599 1153-1166 NN denotes Hyperfilm-ECL
T9598 1149-1152 CC denotes and
T9597 1145-1148 NN denotes kit
T9596 1135-1144 NN denotes detection
T9595 1133-1134 -RRB- denotes )
T9594 1130-1133 NN denotes ECL
T9593 1129-1130 -LRB- denotes (
T9592 1111-1128 NN denotes chemiluminescence
T9591 1102-1110 VB denotes enhanced
T9590 1098-1101 DT denotes the
T9589 1093-1097 IN denotes with
T9588 1084-1092 VB denotes detected
T9587 1079-1083 VB denotes were
T9586 1073-1078 NN denotes bands
T9585 1062-1072 VB denotes hybridized
T9584 1060-1061 -COMMA- denotes ,
T9583 1053-1060 NN denotes washing
T9582 1047-1052 NN denotes TBS-T
T9581 1041-1046 IN denotes After
T9580 1028-1039 NN denotes temperature
T9579 1023-1027 NN denotes room
T9578 1020-1022 IN denotes at
T9577 1015-1019 NN denotes hour
T9576 1013-1014 CD denotes 1
T9575 1009-1012 IN denotes for
T9574 1000-1008 VB denotes incubate
T9573 997-999 TO denotes to
T9572 989-996 VB denotes allowed
T9571 985-988 CC denotes and
T9570 979-984 VB denotes added
T9569 974-978 VB denotes were
T9568 963-973 NN denotes antibodies
T9567 953-962 JJ denotes secondary
T9566 931-952 JJ denotes peroxidase-conjugated
T9565 919-930 JJ denotes horseradish
T9564 917-918 -COMMA- denotes ,
T9563 912-917 NN denotes TBS-T
T9562 907-911 IN denotes with
T9561 901-906 NN denotes times
T9560 896-900 CD denotes four
T9559 888-895 VB denotes washing
T9558 882-887 IN denotes After
T9557 877-880 NN denotes 4°C
T9556 874-876 IN denotes at
T9555 864-873 RB denotes overnight
T9554 854-863 VB denotes incubated
T9553 850-853 CC denotes and
T9552 844-849 VB denotes added
T9551 839-843 VB denotes were
T9550 837-838 -COMMA- denotes ,
T9549 828-837 NN denotes BSA/TBS-T
T9548 826-827 NN denotes %
T9547 825-826 CD denotes 5
T9546 822-824 IN denotes in
T9545 817-821 CD denotes 1000
T9544 816-817 -COLON- denotes :
T9543 815-816 CD denotes 1
T9542 807-814 VB denotes diluted
T9541 805-806 -COMMA- denotes ,
T9540 804-805 -RRB- denotes )
T9539 801-804 NNP denotes USA
T9538 799-800 -COMMA- denotes ,
T9537 797-799 NNP denotes MA
T9536 795-796 -COMMA- denotes ,
T9535 788-795 NNP denotes Beverly
T9534 786-787 -COMMA- denotes ,
T9533 782-786 NNP denotes Inc.
T9532 771-781 NNP denotes Technology
T9531 761-770 NNP denotes Signaling
T9530 756-760 NNP denotes Cell
T9529 755-756 -LRB- denotes (
T9528 749-754 NN denotes IκB-α
T9527 745-748 CC denotes and
T9526 741-744 NN denotes Akt
T9525 726-740 VB denotes phosphorylated
T9524 724-725 -COMMA- denotes ,
T9523 721-724 NNP denotes Akt
T9522 713-720 IN denotes against
T9521 702-712 NN denotes antibodies
T9520 694-701 JJ denotes primary
T9519 689-693 RB denotes then
T9518 687-688 -COMMA- denotes ,
T9517 682-687 NN denotes hours
T9516 680-681 CD denotes 2
T9515 676-679 IN denotes for
T9514 664-675 NN denotes temperature
T9513 659-663 NN denotes room
T9512 656-658 IN denotes at
T9511 654-655 -RRB- denotes )
T9510 648-654 NN denotes saline
T9509 634-647 JJ denotes Tris-buffered
T9508 631-633 IN denotes in
T9507 628-630 CD denotes 20
T9506 622-627 CD denotes Tween
T9505 620-621 NN denotes %
T9504 617-620 CD denotes 0.1
T9503 616-617 -LRB- denotes (
T9502 609-615 NN denotes buffer
T9501 603-608 NN denotes TBS-T
T9500 600-602 IN denotes in
T9499 595-599 NN denotes milk
T9498 587-594 VB denotes skimmed
T9497 585-586 NN denotes %
T9496 582-585 CD denotes 0.1
T9495 577-581 IN denotes with
T9494 564-576 VB denotes preincubated
T9493 560-563 VB denotes was
T9492 551-559 NN denotes membrane
T9491 549-550 -COMMA- denotes ,
T9490 536-549 NN denotes hybridization
T9489 528-535 JJ denotes western
T9488 524-527 IN denotes For
T9487 521-522 -RRB- denotes )
T9486 515-521 NNP denotes Sweden
T9485 513-514 -COMMA- denotes ,
T9484 506-513 NNP denotes Uppsala
T9483 504-505 -COMMA- denotes ,
T9482 497-504 NNP denotes Biotech
T9481 487-496 NNP denotes Pharmacia
T9480 478-486 NNP denotes Amersham
T9479 477-478 -LRB- denotes (
T9478 468-476 NN denotes membrane
T9477 453-467 NN denotes nitrocellulose
T9476 451-452 DT denotes a
T9475 448-450 TO denotes to
T9474 436-447 VB denotes transferred
T9473 432-435 CC denotes and
T9472 423-431 NN denotes SDS–PAGE
T9471 421-422 NN denotes %
T9470 419-421 CD denotes 10
T9469 416-418 IN denotes by
T9468 406-415 VB denotes separated
T9467 401-405 VB denotes were
T9466 393-400 NN denotes samples
T9465 385-392 NN denotes Protein
T9464 382-383 -RRB- denotes )
T9463 379-382 NNP denotes USA
T9462 377-378 -COMMA- denotes ,
T9461 375-377 NNP denotes CA
T9460 373-374 -COMMA- denotes ,
T9459 365-373 NNP denotes Hercules
T9458 363-364 -COMMA- denotes ,
T9457 356-363 NNP denotes Bio-Rad
T9456 355-356 -LRB- denotes (
T9455 348-354 NN denotes method
T9454 339-347 NNP denotes Bradford
T9453 335-338 DT denotes the
T9452 330-334 IN denotes with
T9451 319-329 VB denotes determined
T9450 314-318 VB denotes were
T9449 301-313 NN denotes supernatants
T9448 297-300 DT denotes the
T9447 294-296 IN denotes in
T9446 279-293 NN denotes concentrations
T9445 271-278 NN denotes Protein
T9444 266-269 NN denotes min
T9443 263-265 CD denotes 15
T9442 259-262 IN denotes for
T9441 257-258 -RRB- denotes )
T9440 256-257 NN denotes g
T9439 249-255 CD denotes 19,000
T9438 248-249 -LRB- denotes (
T9437 241-247 NN denotes r.p.m.
T9436 234-240 CD denotes 14,000
T9435 231-233 IN denotes at
T9434 219-230 VB denotes centrifuged
T9433 215-218 CC denotes and
T9432 213-214 -COMMA- denotes ,
T9431 207-213 NN denotes buffer
T9430 201-206 NN denotes lysis
T9429 197-200 DT denotes the
T9428 194-196 IN denotes in
T9427 179-193 NN denotes homogenization
T9426 176-178 IN denotes by
T9425 170-175 NN denotes cells
T9424 166-169 CD denotes 107
T9423 160-165 IN denotes about
T9422 155-159 IN denotes from
T9421 146-154 VB denotes prepared
T9420 141-145 VB denotes were
T9419 133-140 NN denotes lysates
T9418 128-132 NN denotes cell
T9417 122-127 JJ denotes whole
T9403 61-63 CC denotes or
T9402 52-60 NN denotes presence
T9401 48-51 DT denotes the
T9400 45-47 IN denotes in
T9399 43-44 -RRB- denotes )
T9398 38-43 NN denotes μg/ml
T9397 35-37 CD denotes 10
T9396 34-35 -LRB- denotes (
T9395 25-33 NN denotes anti-CD3
T9394 20-24 IN denotes with
T9393 10-19 VB denotes incubated
T9392 5-9 VB denotes were
T9391 0-4 NN denotes PBMC
T9416 120-121 -COMMA- denotes ,
T9415 116-120 NN denotes hour
T9414 114-115 CD denotes 1
T9413 110-113 IN denotes for
T9412 99-109 NN denotes incubation
T9411 93-98 IN denotes After
T9410 90-91 -RRB- denotes )
T9409 88-90 NN denotes μM
T9408 85-87 CD denotes 20
T9407 84-85 -LRB- denotes (
T9406 75-83 NN denotes LY294002
T9405 72-74 IN denotes of
T9404 64-71 NN denotes absence
R4843 T9391 T9392 arg1Of PBMC,were
R4844 T9391 T9393 arg2Of PBMC,incubated
R4845 T9393 T9392 arg2Of incubated,were
R4846 T9393 T9394 arg1Of incubated,with
R4847 T9393 T9400 arg1Of incubated,in
R4848 T9395 T9394 arg2Of anti-CD3,with
R4849 T9395 T9396 arg1Of anti-CD3,(
R4850 T9398 T9396 arg2Of μg/ml,(
R4851 T9398 T9397 arg1Of μg/ml,10
R4852 T9399 T9396 arg3Of ),(
R4853 T9402 T9403 arg1Of presence,or
R4854 T9403 T9400 arg2Of or,in
R4855 T9403 T9401 arg1Of or,the
R4856 T9403 T9405 arg1Of or,of
R4857 T9404 T9403 arg2Of absence,or
R4858 T9406 T9405 arg2Of LY294002,of
R4859 T9406 T9407 arg1Of LY294002,(
R4860 T9409 T9407 arg2Of μM,(
R4861 T9409 T9408 arg1Of μM,20
R4862 T9410 T9407 arg3Of ),(
R4863 T9412 T9411 arg2Of incubation,After
R4864 T9412 T9413 arg1Of incubation,for
R4865 T9415 T9413 arg2Of hour,for
R4866 T9415 T9414 arg1Of hour,1
R4867 T9419 T9417 arg1Of lysates,whole
R4868 T9419 T9418 arg1Of lysates,cell
R4869 T9419 T9420 arg1Of lysates,were
R4870 T9419 T9421 arg2Of lysates,prepared
R4871 T9419 T9434 arg2Of lysates,centrifuged
R4872 T9421 T9422 arg1Of prepared,from
R4873 T9421 T9433 arg1Of prepared,and
R4874 T9424 T9423 arg1Of 107,about
R4875 T9425 T9422 arg2Of cells,from
R4876 T9425 T9424 arg1Of cells,107
R4877 T9427 T9421 arg1Of homogenization,prepared
R4878 T9427 T9426 arg2Of homogenization,by
R4879 T9427 T9428 arg1Of homogenization,in
R4880 T9431 T9428 arg2Of buffer,in
R4881 T9431 T9429 arg1Of buffer,the
R4882 T9431 T9430 arg1Of buffer,lysis
R4883 T9433 T9411 arg1Of and,After
R4884 T9433 T9416 arg1Of and,","
R4885 T9433 T9420 arg2Of and,were
R4886 T9433 T9432 arg1Of and,","
R4887 T9434 T9433 arg2Of centrifuged,and
R4888 T9434 T9435 arg1Of centrifuged,at
R4889 T9434 T9442 arg1Of centrifuged,for
R4890 T9437 T9435 arg2Of r.p.m.,at
R4891 T9437 T9436 arg1Of r.p.m.,"14,000"
R4892 T9437 T9438 arg1Of r.p.m.,(
R4893 T9440 T9438 arg2Of g,(
R4894 T9440 T9439 arg1Of g,"19,000"
R4895 T9441 T9438 arg3Of ),(
R4896 T9444 T9442 arg2Of min,for
R4897 T9444 T9443 arg1Of min,15
R4898 T9446 T9445 arg1Of concentrations,Protein
R4899 T9446 T9447 arg1Of concentrations,in
R4900 T9446 T9450 arg1Of concentrations,were
R4901 T9446 T9451 arg2Of concentrations,determined
R4902 T9449 T9447 arg2Of supernatants,in
R4903 T9449 T9448 arg1Of supernatants,the
R4904 T9451 T9450 arg2Of determined,were
R4905 T9451 T9452 arg1Of determined,with
R4906 T9451 T9456 arg1Of determined,(
R4907 T9455 T9452 arg2Of method,with
R4908 T9455 T9453 arg1Of method,the
R4909 T9455 T9454 arg1Of method,Bradford
R4910 T9457 T9458 arg1Of Bio-Rad,","
R4911 T9458 T9460 arg1Of ",",","
R4912 T9459 T9458 arg2Of Hercules,","
R4913 T9460 T9456 arg2Of ",",(
R4914 T9460 T9462 arg1Of ",",","
R4915 T9460 T9463 arg1Of ",",USA
R4916 T9461 T9460 arg2Of CA,","
R4917 T9464 T9456 arg3Of ),(
R4918 T9466 T9465 arg1Of samples,Protein
R4919 T9466 T9467 arg1Of samples,were
R4920 T9466 T9468 arg2Of samples,separated
R4921 T9466 T9474 arg2Of samples,transferred
R4922 T9468 T9473 arg1Of separated,and
R4923 T9470 T9471 arg1Of 10,%
R4924 T9472 T9468 arg1Of SDS–PAGE,separated
R4925 T9472 T9469 arg2Of SDS–PAGE,by
R4926 T9472 T9470 arg1Of SDS–PAGE,10
R4927 T9473 T9467 arg2Of and,were
R4928 T9473 T9479 arg1Of and,(
R4929 T9474 T9473 arg2Of transferred,and
R4930 T9474 T9475 arg1Of transferred,to
R4931 T9478 T9475 arg2Of membrane,to
R4932 T9478 T9476 arg1Of membrane,a
R4933 T9478 T9477 arg1Of membrane,nitrocellulose
R4934 T9482 T9479 arg2Of Biotech,(
R4935 T9482 T9480 arg1Of Biotech,Amersham
R4936 T9482 T9481 arg1Of Biotech,Pharmacia
R4937 T9482 T9483 arg1Of Biotech,","
R4938 T9484 T9483 arg2Of Uppsala,","
R4939 T9484 T9485 arg1Of Uppsala,","
R4940 T9486 T9485 arg2Of Sweden,","
R4941 T9487 T9479 arg3Of ),(
R4942 T9490 T9488 arg2Of hybridization,For
R4943 T9490 T9489 arg1Of hybridization,western
R4944 T9492 T9493 arg1Of membrane,was
R4945 T9492 T9494 arg2Of membrane,preincubated
R4946 T9494 T9493 arg2Of preincubated,was
R4947 T9494 T9495 arg1Of preincubated,with
R4948 T9494 T9515 arg1Of preincubated,for
R4949 T9494 T9524 arg1Of preincubated,","
R4950 T9497 T9496 arg1Of %,0.1
R4951 T9499 T9495 arg2Of milk,with
R4952 T9499 T9497 arg1Of milk,%
R4953 T9499 T9498 arg2Of milk,skimmed
R4954 T9499 T9500 arg1Of milk,in
R4955 T9502 T9500 arg2Of buffer,in
R4956 T9502 T9501 arg1Of buffer,TBS-T
R4957 T9502 T9503 arg1Of buffer,(
R4958 T9502 T9512 arg1Of buffer,at
R4959 T9505 T9504 arg1Of %,0.1
R4960 T9507 T9503 arg2Of 20,(
R4961 T9507 T9505 arg1Of 20,%
R4962 T9507 T9506 arg1Of 20,Tween
R4963 T9507 T9508 arg1Of 20,in
R4964 T9510 T9508 arg2Of saline,in
R4965 T9510 T9509 arg1Of saline,Tris-buffered
R4966 T9511 T9503 arg3Of ),(
R4967 T9514 T9512 arg2Of temperature,at
R4968 T9514 T9513 arg1Of temperature,room
R4969 T9517 T9515 arg2Of hours,for
R4970 T9517 T9516 arg1Of hours,2
R4971 T9517 T9518 arg1Of hours,","
R4972 T9521 T9518 arg2Of antibodies,","
R4973 T9521 T9519 arg1Of antibodies,then
R4974 T9521 T9520 arg1Of antibodies,primary
R4975 T9521 T9522 arg1Of antibodies,against
R4976 T9523 T9522 arg2Of Akt,against
R4977 T9524 T9488 arg1Of ",",For
R4978 T9524 T9491 arg1Of ",",","
R4979 T9524 T9544 arg1Of ",",:
R4980 T9526 T9527 arg1Of Akt,and
R4981 T9527 T9525 arg2Of and,phosphorylated
R4982 T9527 T9529 arg1Of and,(
R4983 T9527 T9542 arg1Of and,diluted
R4984 T9528 T9527 arg2Of IκB-α,and
R4985 T9533 T9529 arg2Of Inc.,(
R4986 T9533 T9530 arg1Of Inc.,Cell
R4987 T9533 T9531 arg1Of Inc.,Signaling
R4988 T9533 T9532 arg1Of Inc.,Technology
R4989 T9533 T9534 arg1Of Inc.,","
R4990 T9533 T9538 arg1Of Inc.,","
R4991 T9533 T9539 arg1Of Inc.,USA
R4992 T9535 T9536 arg1Of Beverly,","
R4993 T9536 T9534 arg2Of ",",","
R4994 T9537 T9536 arg2Of MA,","
R4995 T9540 T9529 arg3Of ),(
R4996 T9542 T9524 arg2Of diluted,","
R4997 T9542 T9541 arg1Of diluted,","
R4998 T9543 T9542 arg2Of 1,diluted
R4999 T9545 T9546 arg1Of 1000,in
R5000 T9545 T9551 arg1Of 1000,were
R5001 T9545 T9552 arg2Of 1000,added
R5002 T9545 T9554 arg2Of 1000,incubated
R5003 T9547 T9548 arg1Of 5,%
R5004 T9549 T9546 arg2Of BSA/TBS-T,in
R5005 T9549 T9547 arg1Of BSA/TBS-T,5
R5006 T9552 T9553 arg1Of added,and
R5007 T9553 T9544 arg2Of and,:
R5008 T9553 T9550 arg1Of and,","
R5009 T9553 T9551 arg2Of and,were
R5010 T9553 T9556 arg1Of and,at
R5011 T9554 T9553 arg2Of incubated,and
R5012 T9554 T9555 arg1Of incubated,overnight
R5013 T9557 T9556 arg2Of 4°C,at
R5014 T9559 T9558 arg2Of washing,After
R5015 T9559 T9562 arg1Of washing,with
R5016 T9561 T9559 arg2Of times,washing
R5017 T9561 T9560 arg1Of times,four
R5018 T9563 T9562 arg2Of TBS-T,with
R5019 T9568 T9559 arg1Of antibodies,washing
R5020 T9568 T9565 arg1Of antibodies,horseradish
R5021 T9568 T9566 arg1Of antibodies,peroxidase-conjugated
R5022 T9568 T9567 arg1Of antibodies,secondary
R5023 T9568 T9569 arg1Of antibodies,were
R5024 T9568 T9570 arg2Of antibodies,added
R5025 T9568 T9572 arg2Of antibodies,allowed
R5026 T9568 T9574 arg1Of antibodies,incubate
R5027 T9570 T9571 arg1Of added,and
R5028 T9571 T9558 arg1Of and,After
R5029 T9571 T9564 arg1Of and,","
R5030 T9571 T9569 arg2Of and,were
R5031 T9572 T9571 arg2Of allowed,and
R5032 T9574 T9572 arg3Of incubate,allowed
R5033 T9574 T9573 arg1Of incubate,to
R5034 T9574 T9575 arg1Of incubate,for
R5035 T9574 T9578 arg1Of incubate,at
R5036 T9577 T9575 arg2Of hour,for
R5037 T9577 T9576 arg1Of hour,1
R5038 T9580 T9578 arg2Of temperature,at
R5039 T9580 T9579 arg1Of temperature,room
R5040 T9583 T9581 arg2Of washing,After
R5041 T9583 T9582 arg1Of washing,TBS-T
R5042 T9586 T9585 arg2Of bands,hybridized
R5043 T9586 T9587 arg1Of bands,were
R5044 T9586 T9588 arg2Of bands,detected
R5045 T9588 T9581 arg1Of detected,After
R5046 T9588 T9584 arg1Of detected,","
R5047 T9588 T9587 arg2Of detected,were
R5048 T9588 T9589 arg1Of detected,with
R5049 T9594 T9593 arg2Of ECL,(
R5050 T9595 T9593 arg3Of ),(
R5051 T9597 T9592 arg1Of kit,chemiluminescence
R5052 T9597 T9593 arg1Of kit,(
R5053 T9597 T9596 arg1Of kit,detection
R5054 T9597 T9598 arg1Of kit,and
R5055 T9598 T9589 arg2Of and,with
R5056 T9598 T9590 arg1Of and,the
R5057 T9598 T9591 arg2Of and,enhanced
R5058 T9600 T9598 arg2Of reagents,and
R5059 T9600 T9599 arg1Of reagents,Hyperfilm-ECL
R5060 T9600 T9601 arg1Of reagents,(
R5061 T9603 T9601 arg2Of Pharmacia,(
R5062 T9603 T9602 arg1Of Pharmacia,Amersham
R5063 T9604 T9601 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9610 749-754 Protein denotes IκB-α
T9609 741-744 Protein denotes Akt
T9608 721-724 Protein denotes Akt

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9649 741-744 http://www.uniprot.org/uniprot/P31749 denotes Akt
T9648 721-724 http://www.uniprot.org/uniprot/P31749 denotes Akt
T9661 30-33 http://www.uniprot.org/uniprot/P09693 denotes CD3
T9660 30-33 http://www.uniprot.org/uniprot/P07766 denotes CD3
T9659 30-33 http://www.uniprot.org/uniprot/P04234 denotes CD3
T9658 30-33 http://www.uniprot.org/uniprot/P20963 denotes CD3
T9657 741-744 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T9656 721-724 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T9653 741-744 http://www.uniprot.org/uniprot/P31751 denotes Akt
T9652 721-724 http://www.uniprot.org/uniprot/P31751 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T9218 595-599 http://purl.obolibrary.org/obo/UBERON_0001913 denotes milk

GO-BP

Id Subject Object Predicate Lexical cue
T9370 375-377 http://purl.obolibrary.org/obo/GO_0033968 denotes CA
T9369 201-206 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

GO-MF

Id Subject Object Predicate Lexical cue
T9613 963-973 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T9612 702-712 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T9611 375-377 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

GO-CC

Id Subject Object Predicate Lexical cue
T9621 963-973 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T9620 702-712 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T9619 963-973 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T9618 702-712 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T9617 551-559 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane
T9616 468-476 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane
T9615 170-175 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9614 128-132 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T9368 1041-1197 Sentence denotes After TBS-T washing, hybridized bands were detected with the enhanced chemiluminescence (ECL) detection kit and Hyperfilm-ECL reagents (Amersham Pharmacia).
T9367 524-1040 Sentence denotes For western hybridization, membrane was preincubated with 0.1% skimmed milk in TBS-T buffer (0.1% Tween 20 in Tris-buffered saline) at room temperature for 2 hours, then primary antibodies against Akt, phosphorylated Akt and IκB-α (Cell Signaling Technology Inc., Beverly, MA, USA), diluted 1:1000 in 5% BSA/TBS-T, were added and incubated overnight at 4°C. After washing four times with TBS-T, horseradish peroxidase-conjugated secondary antibodies were added and allowed to incubate for 1 hour at room temperature.
T9366 385-523 Sentence denotes Protein samples were separated by 10% SDS–PAGE and transferred to a nitrocellulose membrane (Amersham Pharmacia Biotech, Uppsala, Sweden).
T9365 271-384 Sentence denotes Protein concentrations in the supernatants were determined with the Bradford method (Bio-Rad, Hercules, CA, USA).
T9364 93-270 Sentence denotes After incubation for 1 hour, whole cell lysates were prepared from about 107 cells by homogenization in the lysis buffer, and centrifuged at 14,000 r.p.m. (19,000 g) for 15 min.
T9363 0-92 Sentence denotes PBMC were incubated with anti-CD3 (10 μg/ml) in the presence or absence of LY294002 (20 μM).
T93 0-92 Sentence denotes PBMC were incubated with anti-CD3 (10 μg/ml) in the presence or absence of LY294002 (20 μM).
T94 93-270 Sentence denotes After incubation for 1 hour, whole cell lysates were prepared from about 107 cells by homogenization in the lysis buffer, and centrifuged at 14,000 r.p.m. (19,000 g) for 15 min.
T95 271-384 Sentence denotes Protein concentrations in the supernatants were determined with the Bradford method (Bio-Rad, Hercules, CA, USA).
T96 385-523 Sentence denotes Protein samples were separated by 10% SDS–PAGE and transferred to a nitrocellulose membrane (Amersham Pharmacia Biotech, Uppsala, Sweden).
T97 524-881 Sentence denotes For western hybridization, membrane was preincubated with 0.1% skimmed milk in TBS-T buffer (0.1% Tween 20 in Tris-buffered saline) at room temperature for 2 hours, then primary antibodies against Akt, phosphorylated Akt and IκB-α (Cell Signaling Technology Inc., Beverly, MA, USA), diluted 1:1000 in 5% BSA/TBS-T, were added and incubated overnight at 4°C.
T98 882-1040 Sentence denotes After washing four times with TBS-T, horseradish peroxidase-conjugated secondary antibodies were added and allowed to incubate for 1 hour at room temperature.
T99 1041-1197 Sentence denotes After TBS-T washing, hybridized bands were detected with the enhanced chemiluminescence (ECL) detection kit and Hyperfilm-ECL reagents (Amersham Pharmacia).

simple1

Id Subject Object Predicate Lexical cue
T9645 749-754 Protein denotes IκB-α
T9644 741-744 Protein denotes Akt
T9643 721-724 Protein denotes Akt

DLUT931

Id Subject Object Predicate Lexical cue
T9677 726-740 Phosphorylation denotes phosphorylated
T9675 749-754 Protein denotes IκB-α
T9674 741-744 Protein denotes Akt
T9673 721-724 Protein denotes Akt
R5074 T9673 T9677 themeOf Akt,phosphorylated
R5075 T9674 T9677 themeOf Akt,phosphorylated
R5076 T9675 T9677 themeOf IκB-α,phosphorylated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9957 1130-1133 Protein denotes ECL
T9956 0-4 Entity denotes PBMC
T9954 551-559 Entity denotes membrane
T9953 634-647 Entity denotes Tris-buffered
T9952 953-973 Entity denotes secondary antibodies
T9951 72-91 Entity denotes of LY294002 (20 μM)
T9950 297-313 Entity denotes the supernatants
T9948 1047-1072 Entity denotes TBS-T washing, hybridized
T9947 25-44 Protein denotes anti-CD3 (10 μg/ml)
T9946 385-400 Entity denotes Protein samples
T9945 160-175 Entity denotes about 107 cells
T9944 634-654 Entity denotes Tris-buffered saline
T9943 749-754 Protein denotes IκB-α
T9942 721-724 Protein denotes Akt
T9941 825-838 Entity denotes 5% BSA/TBS-T,
T9940 756-760 Entity denotes Cell
T9939 912-918 Entity denotes TBS-T,
T9938 603-608 Entity denotes TBS-T
T9937 689-724 Entity denotes then primary antibodies against Akt
T9935 741-744 Protein denotes Akt
T9934 797-806 Protein denotes MA, USA),
T9933 271-313 Entity denotes Protein concentrations in the supernatants
T9932 1153-1196 Entity denotes Hyperfilm-ECL reagents (Amersham Pharmacia)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9906 1111-1128 NN denotes chemiluminescence
T9907 1129-1130 -LRB- denotes (
T9905 1102-1110 JJ denotes enhanced
T9904 1098-1101 DT denotes the
T9903 1093-1097 IN denotes with
T9902 1084-1092 VBN denotes detected
T9901 1079-1083 VBD denotes were
T9900 1073-1078 NNS denotes bands
T9899 1062-1072 VBN denotes hybridized
T9898 1060-1061 , denotes ,
T9897 1053-1060 VBG denotes washing
T9896 1047-1052 NNP denotes TBS-T
T9895 1041-1046 IN denotes After
T9894 1039-1040 . denotes .
T9893 1028-1039 NN denotes temperature
T9892 1023-1027 NN denotes room
T9891 1020-1022 IN denotes at
T9890 1015-1019 NN denotes hour
T9889 1013-1014 CD denotes 1
T9888 1009-1012 IN denotes for
T9887 1000-1008 VB denotes incubate
T9886 997-999 TO denotes to
T9885 989-996 VBN denotes allowed
T9884 985-988 CC denotes and
T9883 979-984 VBN denotes added
T9882 974-978 VBD denotes were
T9881 963-973 NNS denotes antibodies
T9880 953-962 JJ denotes secondary
T9879 931-952 JJ denotes peroxidase-conjugated
T9878 919-930 JJ denotes horseradish
T9877 917-918 , denotes ,
T9876 912-917 NNP denotes TBS-T
T9875 907-911 IN denotes with
T9874 901-906 NNS denotes times
T9873 896-900 CD denotes four
T9872 888-895 VBG denotes washing
T9871 882-887 IN denotes After
T9870 880-881 . denotes .
T9869 879-880 NNP denotes C
T9868 878-879 CD denotes °
T9867 877-878 CD denotes 4
T9866 874-876 IN denotes at
T9865 864-873 JJ denotes overnight
T9864 854-863 VBN denotes incubated
T9863 850-853 CC denotes and
T9862 844-849 VBN denotes added
T9861 839-843 VBD denotes were
T9860 837-838 , denotes ,
T9859 828-837 NN denotes BSA/TBS-T
T9858 826-827 NN denotes %
T9857 825-826 CD denotes 5
T9856 822-824 IN denotes in
T9855 815-821 CD denotes 1:1000
T9854 807-814 VBN denotes diluted
T9853 805-806 , denotes ,
T9852 804-805 -RRB- denotes )
T9851 801-804 NNP denotes USA
T9850 799-800 , denotes ,
T9849 797-799 NNP denotes MA
T9848 795-796 , denotes ,
T9847 788-795 NNP denotes Beverly
T9846 786-787 , denotes ,
T9845 782-786 NNP denotes Inc.
T9844 771-781 NNP denotes Technology
T9843 761-770 NNP denotes Signaling
T9842 756-760 NNP denotes Cell
T9841 755-756 -LRB- denotes (
T9840 749-754 NNP denotes IκB-α
T9839 745-748 CC denotes and
T9838 741-744 NNP denotes Akt
T9837 726-740 VBD denotes phosphorylated
T9836 724-725 , denotes ,
T9835 721-724 NNP denotes Akt
T9834 713-720 IN denotes against
T9833 702-712 NNS denotes antibodies
T9832 694-701 JJ denotes primary
T9831 689-693 RB denotes then
T9830 687-688 , denotes ,
T9829 682-687 NNS denotes hours
T9828 680-681 CD denotes 2
T9827 676-679 IN denotes for
T9826 664-675 NN denotes temperature
T9825 659-663 NN denotes room
T9824 656-658 IN denotes at
T9823 654-655 -RRB- denotes )
T9822 648-654 NN denotes saline
T9821 634-647 JJ denotes Tris-buffered
T9820 631-633 IN denotes in
T9819 628-630 CD denotes 20
T9818 622-627 CD denotes Tween
T9817 620-621 NN denotes %
T9816 617-620 CD denotes 0.1
T9815 616-617 -LRB- denotes (
T9814 609-615 NN denotes buffer
T9813 603-608 NNP denotes TBS-T
T9812 600-602 IN denotes in
T9811 595-599 NN denotes milk
T9810 587-594 VBD denotes skimmed
T9809 585-586 NN denotes %
T9808 582-585 CD denotes 0.1
T9807 577-581 IN denotes with
T9806 564-576 VBN denotes preincubated
T9805 560-563 VBD denotes was
T9804 551-559 NN denotes membrane
T9803 549-550 , denotes ,
T9802 536-549 NN denotes hybridization
T9801 528-535 JJ denotes western
T9800 524-527 IN denotes For
T9799 522-523 . denotes .
T9798 521-522 -RRB- denotes )
T9797 515-521 NNP denotes Sweden
T9796 513-514 , denotes ,
T9795 506-513 NNP denotes Uppsala
T9794 504-505 , denotes ,
T9793 497-504 NNP denotes Biotech
T9792 487-496 NNP denotes Pharmacia
T9791 478-486 NNP denotes Amersham
T9790 477-478 -LRB- denotes (
T9789 468-476 NN denotes membrane
T9788 453-467 JJ denotes nitrocellulose
T9787 451-452 DT denotes a
T9786 448-450 TO denotes to
T9785 436-447 VBN denotes transferred
T9784 432-435 CC denotes and
T9783 427-431 NNP denotes PAGE
T9782 423-426 NNP denotes SDS
T9781 421-422 NN denotes %
T9780 419-421 CD denotes 10
T9779 416-418 IN denotes by
T9778 406-415 VBN denotes separated
T9777 401-405 VBD denotes were
T9776 393-400 NNS denotes samples
T9775 385-392 NN denotes Protein
T9774 383-384 . denotes .
T9773 382-383 -RRB- denotes )
T9772 379-382 NNP denotes USA
T9771 377-378 , denotes ,
T9770 375-377 NNP denotes CA
T9769 373-374 , denotes ,
T9768 365-373 NNP denotes Hercules
T9767 363-364 , denotes ,
T9766 356-363 NNP denotes Bio-Rad
T9765 355-356 -LRB- denotes (
T9764 348-354 NN denotes method
T9763 339-347 NNP denotes Bradford
T9762 335-338 DT denotes the
T9761 330-334 IN denotes with
T9760 319-329 VBN denotes determined
T9759 314-318 VBD denotes were
T9758 301-313 NNS denotes supernatants
T9757 297-300 DT denotes the
T9756 294-296 IN denotes in
T9755 279-293 NNS denotes concentrations
T9754 271-278 NN denotes Protein
T9753 269-270 . denotes .
T9752 266-269 NN denotes min
T9751 263-265 CD denotes 15
T9750 259-262 IN denotes for
T9749 257-258 -RRB- denotes )
T9748 256-257 NN denotes g
T9747 249-255 CD denotes 19,000
T9746 248-249 -LRB- denotes (
T9745 241-247 NN denotes r.p.m.
T9744 234-240 CD denotes 14,000
T9743 231-233 IN denotes at
T9742 219-230 VBD denotes centrifuged
T9741 215-218 CC denotes and
T9740 213-214 , denotes ,
T9739 207-213 NN denotes buffer
T9738 201-206 NN denotes lysis
T9737 197-200 DT denotes the
T9736 194-196 IN denotes in
T9735 179-193 NN denotes homogenization
T9734 176-178 IN denotes by
T9733 170-175 NNS denotes cells
T9732 166-169 CD denotes 107
T9731 160-165 IN denotes about
T9730 155-159 IN denotes from
T9729 146-154 VBN denotes prepared
T9728 141-145 VBD denotes were
T9727 133-140 NNS denotes lysates
T9726 128-132 NN denotes cell
T9725 122-127 JJ denotes whole
T9724 120-121 , denotes ,
T9723 116-120 NN denotes hour
T9722 114-115 CD denotes 1
T9721 110-113 IN denotes for
T9720 99-109 NN denotes incubation
T9719 93-98 IN denotes After
T9718 91-92 . denotes .
T9717 90-91 -RRB- denotes )
T9716 88-90 NNP denotes μM
T9715 85-87 CD denotes 20
T9714 84-85 -LRB- denotes (
T9713 75-83 NNP denotes LY294002
T9712 72-74 IN denotes of
T9711 64-71 NN denotes absence
T9710 61-63 CC denotes or
T9709 52-60 NN denotes presence
T9708 48-51 DT denotes the
T9707 45-47 IN denotes in
T9706 43-44 -RRB- denotes )
T9705 41-43 NN denotes ml
T9704 40-41 NN denotes /
T9703 38-40 NN denotes μg
T9702 35-37 CD denotes 10
T9701 34-35 -LRB- denotes (
T9700 25-33 JJ denotes anti-CD3
T9699 20-24 IN denotes with
T9698 10-19 VBN denotes incubated
T9697 5-9 VBD denotes were
T9696 0-4 NNP denotes PBMC
T9919 1196-1197 . denotes .
T9918 1195-1196 -RRB- denotes )
T9917 1186-1195 NNP denotes Pharmacia
T9916 1177-1185 NNP denotes Amersham
T9915 1176-1177 -LRB- denotes (
T9914 1167-1175 NNS denotes reagents
T9913 1153-1166 JJ denotes Hyperfilm-ECL
T9912 1149-1152 CC denotes and
T9911 1145-1148 NN denotes kit
T9910 1135-1144 NN denotes detection
T9909 1133-1134 -RRB- denotes )
T9908 1130-1133 NNP denotes ECL
R5095 T9702 T9703 nummod 10,μg
R5096 T9703 T9705 nmod μg,ml
R5097 T9704 T9705 compound /,ml
R5098 T9705 T9700 appos ml,anti-CD3
R5099 T9706 T9705 punct ),ml
R5100 T9707 T9698 prep in,incubated
R5101 T9708 T9709 det the,presence
R5102 T9709 T9707 pobj presence,in
R5103 T9710 T9709 cc or,presence
R5104 T9711 T9709 conj absence,presence
R5105 T9712 T9711 prep of,absence
R5106 T9713 T9712 pobj LY294002,of
R5107 T9714 T9716 punct (,μM
R5108 T9715 T9716 nummod 20,μM
R5109 T9716 T9713 appos μM,LY294002
R5110 T9717 T9716 punct ),μM
R5112 T9719 T9729 prep After,prepared
R5113 T9720 T9719 pobj incubation,After
R5114 T9721 T9729 prep for,prepared
R5115 T9722 T9723 nummod 1,hour
R5116 T9723 T9721 pobj hour,for
R5117 T9724 T9729 punct ",",prepared
R5118 T9725 T9727 amod whole,lysates
R5119 T9726 T9727 compound cell,lysates
R5120 T9727 T9729 nsubjpass lysates,prepared
R5121 T9728 T9729 auxpass were,prepared
R5122 T9729 T9729 ROOT prepared,prepared
R5123 T9730 T9729 prep from,prepared
R5124 T9731 T9733 nmod about,cells
R5125 T9732 T9733 nummod 107,cells
R5126 T9733 T9730 pobj cells,from
R5127 T9734 T9733 prep by,cells
R5128 T9735 T9734 pobj homogenization,by
R5129 T9736 T9733 prep in,cells
R5130 T9737 T9739 det the,buffer
R5131 T9738 T9739 compound lysis,buffer
R5132 T9739 T9736 pobj buffer,in
R5133 T9740 T9729 punct ",",prepared
R5134 T9741 T9729 cc and,prepared
R5135 T9742 T9729 conj centrifuged,prepared
R5136 T9743 T9742 prep at,centrifuged
R5137 T9744 T9745 nummod "14,000",r.p.m.
R5138 T9745 T9743 pobj r.p.m.,at
R5139 T9746 T9745 punct (,r.p.m.
R5140 T9747 T9748 nummod "19,000",g
R5141 T9748 T9745 appos g,r.p.m.
R5142 T9749 T9745 punct ),r.p.m.
R5143 T9750 T9742 prep for,centrifuged
R5144 T9751 T9752 nummod 15,min
R5145 T9752 T9750 pobj min,for
R5146 T9753 T9729 punct .,prepared
R5147 T9754 T9755 compound Protein,concentrations
R5148 T9755 T9760 nsubjpass concentrations,determined
R5149 T9756 T9755 prep in,concentrations
R5150 T9757 T9758 det the,supernatants
R5151 T9758 T9756 pobj supernatants,in
R5152 T9759 T9760 auxpass were,determined
R5153 T9760 T9760 ROOT determined,determined
R5154 T9761 T9760 prep with,determined
R5155 T9762 T9764 det the,method
R5156 T9763 T9764 compound Bradford,method
R5157 T9764 T9761 pobj method,with
R5158 T9765 T9766 punct (,Bio-Rad
R5159 T9766 T9764 appos Bio-Rad,method
R5160 T9767 T9766 punct ",",Bio-Rad
R5161 T9768 T9766 conj Hercules,Bio-Rad
R5162 T9769 T9768 punct ",",Hercules
R5163 T9770 T9768 conj CA,Hercules
R5164 T9771 T9770 punct ",",CA
R5165 T9772 T9770 conj USA,CA
R5166 T9773 T9766 punct ),Bio-Rad
R5167 T9774 T9760 punct .,determined
R5168 T9775 T9776 compound Protein,samples
R5169 T9776 T9778 nsubjpass samples,separated
R5170 T9777 T9778 auxpass were,separated
R5171 T9778 T9778 ROOT separated,separated
R5172 T9779 T9778 prep by,separated
R5173 T9780 T9781 nummod 10,%
R5174 T9781 T9779 pobj %,by
R5175 T9782 T9783 compound SDS,PAGE
R5176 T9783 T9778 npadvmod PAGE,separated
R5177 T9784 T9778 cc and,separated
R5178 T9785 T9778 conj transferred,separated
R5179 T9786 T9785 prep to,transferred
R5180 T9787 T9789 det a,membrane
R5181 T9788 T9789 amod nitrocellulose,membrane
R5182 T9789 T9786 pobj membrane,to
R5183 T9790 T9793 punct (,Biotech
R5184 T9791 T9793 compound Amersham,Biotech
R5185 T9792 T9793 compound Pharmacia,Biotech
R5186 T9793 T9789 appos Biotech,membrane
R5187 T9794 T9793 punct ",",Biotech
R5188 T9795 T9793 conj Uppsala,Biotech
R5189 T9796 T9795 punct ",",Uppsala
R5190 T9797 T9795 conj Sweden,Uppsala
R5191 T9798 T9793 punct ),Biotech
R5192 T9799 T9778 punct .,separated
R5193 T9800 T9806 prep For,preincubated
R5194 T9801 T9802 amod western,hybridization
R5195 T9802 T9800 pobj hybridization,For
R5196 T9803 T9806 punct ",",preincubated
R5197 T9804 T9806 nsubjpass membrane,preincubated
R5198 T9805 T9806 auxpass was,preincubated
R5199 T9806 T9806 ROOT preincubated,preincubated
R5200 T9807 T9806 prep with,preincubated
R5201 T9808 T9809 nummod 0.1,%
R5202 T9809 T9810 nsubj %,skimmed
R5203 T9810 T9806 conj skimmed,preincubated
R5204 T9811 T9810 dobj milk,skimmed
R5205 T9812 T9810 prep in,skimmed
R5206 T9813 T9814 compound TBS-T,buffer
R5207 T9814 T9812 pobj buffer,in
R5208 T9815 T9817 punct (,%
R5209 T9816 T9817 nummod 0.1,%
R5210 T9817 T9837 nsubj %,phosphorylated
R5211 T9818 T9819 nummod Tween,20
R5212 T9819 T9837 dep 20,phosphorylated
R5213 T9820 T9819 prep in,20
R5214 T9821 T9822 amod Tris-buffered,saline
R5215 T9822 T9820 pobj saline,in
R5216 T9823 T9819 punct ),20
R5217 T9824 T9819 prep at,20
R5218 T9825 T9826 compound room,temperature
R5219 T9826 T9824 pobj temperature,at
R5220 T9827 T9819 prep for,20
R5221 T9828 T9829 nummod 2,hours
R5222 T9829 T9827 pobj hours,for
R5223 T9830 T9819 punct ",",20
R5224 T9831 T9833 advmod then,antibodies
R5225 T9832 T9833 amod primary,antibodies
R5226 T9833 T9819 appos antibodies,20
R5227 T9834 T9833 prep against,antibodies
R5228 T9835 T9834 pobj Akt,against
R5229 T9836 T9819 punct ",",20
R5230 T9837 T9810 advcl phosphorylated,skimmed
R5231 T9838 T9837 dobj Akt,phosphorylated
R5232 T9839 T9838 cc and,Akt
R5233 T9840 T9838 conj IκB-α,Akt
R5234 T9841 T9845 punct (,Inc.
R5235 T9842 T9845 compound Cell,Inc.
R5236 T9843 T9845 compound Signaling,Inc.
R5237 T9844 T9845 compound Technology,Inc.
R5238 T9845 T9838 conj Inc.,Akt
R5239 T9846 T9845 punct ",",Inc.
R5240 T9847 T9845 npadvmod Beverly,Inc.
R5241 T9848 T9847 punct ",",Beverly
R5242 T9849 T9847 conj MA,Beverly
R5243 T9850 T9849 punct ",",MA
R5244 T9851 T9849 npadvmod USA,MA
R5245 T9852 T9849 punct ),MA
R5246 T9853 T9845 punct ",",Inc.
R5247 T9854 T9837 prep diluted,phosphorylated
R5248 T9855 T9854 npadvmod 1:1000,diluted
R5249 T9856 T9855 prep in,1:1000
R5250 T9857 T9858 nummod 5,%
R5251 T9858 T9859 compound %,BSA/TBS-T
R5252 T9859 T9856 pobj BSA/TBS-T,in
R5253 T9860 T9862 punct ",",added
R5254 T9861 T9862 auxpass were,added
R5255 T9862 T9806 conj added,preincubated
R5256 T9863 T9862 cc and,added
R5290 T9897 T9895 pcomp washing,After
R5291 T9898 T9902 punct ",",detected
R5292 T9899 T9900 amod hybridized,bands
R5293 T9900 T9902 nsubjpass bands,detected
R5294 T9901 T9902 auxpass were,detected
R5295 T9902 T9902 ROOT detected,detected
R5296 T9903 T9902 prep with,detected
R5297 T9904 T9906 det the,chemiluminescence
R5298 T9905 T9906 amod enhanced,chemiluminescence
R5299 T9906 T9903 pobj chemiluminescence,with
R5300 T9907 T9906 punct (,chemiluminescence
R5301 T9908 T9906 appos ECL,chemiluminescence
R5302 T9909 T9911 punct ),kit
R5303 T9910 T9911 compound detection,kit
R5304 T9911 T9906 conj kit,chemiluminescence
R5305 T9912 T9911 cc and,kit
R5306 T9913 T9914 amod Hyperfilm-ECL,reagents
R5307 T9914 T9911 conj reagents,kit
R5308 T9915 T9917 punct (,Pharmacia
R5309 T9916 T9917 compound Amersham,Pharmacia
R5310 T9917 T9914 appos Pharmacia,reagents
R5311 T9918 T9914 punct ),reagents
R5312 T9919 T9902 punct .,detected
R5090 T9697 T9698 auxpass were,incubated
R5092 T9699 T9698 prep with,incubated
R5093 T9700 T9699 pobj anti-CD3,with
R5094 T9701 T9705 punct (,ml
R5257 T9864 T9862 conj incubated,added
R5258 T9865 T9864 advmod overnight,incubated
R5259 T9866 T9864 prep at,incubated
R5260 T9867 T9868 nummod 4,°
R5261 T9868 T9866 pobj °,at
R5262 T9869 T9862 nsubj C,added
R5263 T9870 T9862 punct .,added
R5264 T9871 T9883 prep After,added
R5265 T9872 T9871 pcomp washing,After
R5266 T9873 T9874 nummod four,times
R5267 T9874 T9872 dobj times,washing
R5268 T9875 T9872 prep with,washing
R5269 T9876 T9875 pobj TBS-T,with
R5270 T9877 T9883 punct ",",added
R5271 T9878 T9881 amod horseradish,antibodies
R5272 T9879 T9881 amod peroxidase-conjugated,antibodies
R5273 T9880 T9881 amod secondary,antibodies
R5274 T9881 T9883 nsubjpass antibodies,added
R5275 T9882 T9883 auxpass were,added
R5276 T9883 T9883 ROOT added,added
R5277 T9884 T9883 cc and,added
R5278 T9885 T9883 conj allowed,added
R5279 T9886 T9887 aux to,incubate
R5280 T9887 T9885 xcomp incubate,allowed
R5281 T9888 T9887 prep for,incubate
R5282 T9889 T9890 nummod 1,hour
R5283 T9890 T9888 pobj hour,for
R5284 T9891 T9887 prep at,incubate
R5285 T9892 T9893 compound room,temperature
R5286 T9893 T9891 pobj temperature,at
R5287 T9894 T9883 punct .,added
R5288 T9895 T9902 prep After,detected
R5289 T9896 T9897 nsubj TBS-T,washing

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9632 721-724 Protein denotes Akt
T9639 919-941 Protein denotes horseradish peroxidase
T9638 912-917 Protein denotes TBS-T
T9637 726-740 Phosphorylation denotes phosphorylated
T9636 726-740 Phosphorylation denotes phosphorylated
T9635 726-740 Phosphorylation denotes phosphorylated
T9634 749-754 Protein denotes IκB-α
T9633 741-744 Protein denotes Akt
R5067 T9632 T9635 themeOf Akt,phosphorylated
R5068 T9633 T9636 themeOf Akt,phosphorylated
R5069 T9634 T9637 themeOf IκB-α,phosphorylated

testone

Id Subject Object Predicate Lexical cue
T9204 726-740 Phosphorylation denotes phosphorylated
T9202 749-754 Protein denotes IκB-α
T9201 741-744 Protein denotes Akt
T9200 721-724 Protein denotes Akt
R4824 T9201 T9204 themeOf Akt,phosphorylated
R4825 T9202 T9204 themeOf IκB-α,phosphorylated