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PMC:1064873 / 8763-9171 JSONTXT

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biosemtest

Id Subject Object Predicate Lexical cue
T7464 130-142 UMLS/C2348609 denotes upplemented
T7460 39-61 UMLS/C1515100 denotes uspensions in culture
T7457 154-159 UMLS/C0019215 denotes EPES
T7455 34-38 UMLS/C1136359 denotes ell
T7452 218-228 UMLS/C0030842 denotes enicillin,
T7451 1-6 UMLS/C0231290 denotes fter
T7444 54-68 UMLS/C0010454 denotes ulture medium
T7442 34-38 UMLS/C1948049 denotes ell
T7441 80-86 UMLS/C0439536 denotes edium;
T7438 34-38 UMLS/C0007634 denotes ell
T7426 16-22 UMLS/C0040300 denotes issue
T7422 1-6 UMLS/C0687676 denotes fter
T7419 244-256 UMLS/C0038425 denotes treptomycin;
T7416 363-369 UMLS/C0005971 denotes ates (
T7414 218-228 UMLS/C0220892 denotes enicillin,
T7404 130-142 UMLS/C1549514 denotes upplemented
T7400 313-325 UMLS/C0039421 denotes echnologies)
T7399 263-275 UMLS/C0039421 denotes echnologies)
T7398 93-105 UMLS/C0039421 denotes echnologies,
T7396 80-86 UMLS/C0009458 denotes edium;
T7395 308-312 UMLS/C0376558 denotes ife
T7394 258-262 UMLS/C0376558 denotes ife
T7393 88-92 UMLS/C0376558 denotes ife
T7391 34-38 UMLS/C1704653 denotes ell
T7390 7-15 UMLS/C0849355 denotes emoving
T7389 182-206 UMLS/C0311461 denotes onessential amino acids,
T7383 130-142 UMLS/C1947943 denotes upplemented
T7382 394-397 UMLS/C0041703 denotes A)
T7381 125-128 UMLS/C0041703 denotes SA)
T7377 332-341 UMLS/C1439852 denotes ncubated
T7373 34-38 UMLS/C1269647 denotes ell
T7372 80-86 UMLS/C1561547 denotes edium;
T7369 363-369 UMLS/C0407295 denotes ates (
T7368 23-29 UMLS/C0440266 denotes ebris,
T7364 166-177 UMLS/C0017797 denotes -glutamine,
T7359 363-369 UMLS/C1139930 denotes ates (
T7358 130-142 UMLS/C0242295 denotes upplemented
T7353 16-22 UMLS/C1547928 denotes issue
T7343 208-217 UMLS/C2346524 denotes 00 IU/ml
T7342 80-86 UMLS/C1705217 denotes edium;

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7685 404-407 NN denotes min
T7684 401-403 CD denotes 45
T7683 397-400 IN denotes for
T7682 395-396 -RRB- denotes )
T7681 392-395 NNP denotes USA
T7680 390-391 -COMMA- denotes ,
T7679 388-390 NNP denotes MA
T7678 386-387 -COMMA- denotes ,
T7677 377-386 NNP denotes Cambridge
T7676 375-376 -COMMA- denotes ,
T7675 369-375 NNP denotes Coster
T7674 368-369 -LRB- denotes (
T7673 361-367 NN denotes plates
T7672 352-360 JJ denotes six-well
T7671 349-351 IN denotes in
T7670 344-348 NN denotes 37°C
T7669 341-343 IN denotes at
T7668 331-340 VB denotes incubated
T7667 326-330 VB denotes were
T7666 324-325 -RRB- denotes )
T7665 312-324 NNP denotes Technologies
T7664 307-311 NNP denotes Life
T7663 306-307 -LRB- denotes (
T7662 302-305 NN denotes FCS
T7661 285-301 JJ denotes heat-inactivated
T7660 283-284 NN denotes %
T7659 281-283 CD denotes 10
T7658 276-280 IN denotes with
T7657 274-275 -RRB- denotes )
T7656 262-274 NNP denotes Technologies
T7655 257-261 NNP denotes Life
T7654 255-256 -COLON- denotes ;
T7653 243-255 NN denotes streptomycin
T7652 237-242 NN denotes mg/ml
T7651 233-236 CD denotes 100
T7650 229-232 CC denotes and
T7649 227-228 -COMMA- denotes ,
T7648 217-227 NN denotes penicillin
T7647 211-216 NN denotes IU/ml
T7646 207-210 CD denotes 100
T7645 205-206 -COMMA- denotes ,
T7644 200-205 NN denotes acids
T7643 194-199 NN denotes amino
T7642 181-193 JJ denotes nonessential
T7641 179-180 NN denotes %
T7640 178-179 CD denotes 2
T7639 176-177 -COMMA- denotes ,
T7638 165-176 NN denotes L-glutamine
T7637 162-164 NN denotes mM
T7636 160-161 CD denotes 2
T7635 159-160 -LRB- denotes (
T7634 153-158 NN denotes HEPES
T7633 150-152 NN denotes mM
T7632 147-149 CD denotes 25
T7631 142-146 IN denotes with
T7630 129-141 VB denotes supplemented
T7629 127-128 -RRB- denotes )
T7628 124-127 NNP denotes USA
T7627 122-123 -COMMA- denotes ,
T7626 120-122 NNP denotes MD
T7625 118-119 -COMMA- denotes ,
T7624 106-118 NNP denotes Gaithersburg
T7623 104-105 -COMMA- denotes ,
T7622 92-104 NNP denotes Technologies
T7621 87-91 NNP denotes Life
T7620 85-86 -COLON- denotes ;
T7619 79-85 NN denotes medium
T7618 74-78 CD denotes 1640
T7617 69-73 NN denotes RPMI
T7616 68-69 -LRB- denotes (
T7615 61-67 NN denotes medium
T7614 53-60 NN denotes culture
T7613 50-52 IN denotes in
T7612 38-49 NN denotes suspensions
T7611 33-37 NN denotes cell
T7610 30-32 JJ denotes ST
T7609 28-29 -COMMA- denotes ,
T7608 22-28 NN denotes debris
T7607 15-21 NN denotes tissue
T7606 6-14 VB denotes removing
T7605 0-5 IN denotes After
R3710 T7606 T7605 arg2Of removing,After
R3711 T7608 T7606 arg2Of debris,removing
R3712 T7608 T7607 arg1Of debris,tissue
R3713 T7608 T7667 modOf debris,were
R3714 T7612 T7610 arg1Of suspensions,ST
R3715 T7612 T7611 arg1Of suspensions,cell
R3716 T7612 T7613 arg1Of suspensions,in
R3717 T7612 T7616 arg1Of suspensions,(
R3718 T7612 T7630 arg2Of suspensions,supplemented
R3719 T7612 T7658 arg1Of suspensions,with
R3720 T7612 T7667 arg1Of suspensions,were
R3721 T7612 T7668 arg2Of suspensions,incubated
R3722 T7615 T7613 arg2Of medium,in
R3723 T7615 T7614 arg1Of medium,culture
R3724 T7619 T7617 arg1Of medium,RPMI
R3725 T7619 T7618 arg1Of medium,1640
R3726 T7619 T7620 arg1Of medium,;
R3727 T7620 T7616 arg2Of ;,(
R3728 T7620 T7623 arg1Of ;,","
R3729 T7620 T7627 arg1Of ;,","
R3730 T7620 T7628 arg1Of ;,USA
R3731 T7622 T7620 arg2Of Technologies,;
R3732 T7622 T7621 arg1Of Technologies,Life
R3733 T7624 T7623 arg2Of Gaithersburg,","
R3734 T7624 T7625 arg1Of Gaithersburg,","
R3735 T7626 T7625 arg2Of MD,","
R3736 T7629 T7616 arg3Of ),(
R3737 T7630 T7631 arg1Of supplemented,with
R3738 T7632 T7633 arg1Of 25,mM
R3739 T7634 T7631 arg2Of HEPES,with
R3740 T7634 T7632 arg1Of HEPES,25
R3741 T7634 T7635 arg1Of HEPES,(
R3742 T7638 T7636 arg1Of L-glutamine,2
R3743 T7638 T7637 arg1Of L-glutamine,mM
R3744 T7638 T7639 arg1Of L-glutamine,","
R3745 T7639 T7645 arg1Of ",",","
R3746 T7640 T7641 arg1Of 2,%
R3747 T7644 T7639 arg2Of acids,","
R3748 T7644 T7640 arg1Of acids,2
R3749 T7644 T7642 arg1Of acids,nonessential
R3750 T7644 T7643 arg1Of acids,amino
R3751 T7645 T7650 arg1Of ",",and
R3752 T7648 T7645 arg2Of penicillin,","
R3753 T7648 T7646 arg1Of penicillin,100
R3754 T7648 T7647 arg1Of penicillin,IU/ml
R3755 T7650 T7635 arg2Of and,(
R3756 T7650 T7649 arg1Of and,","
R3757 T7653 T7651 arg1Of streptomycin,100
R3758 T7653 T7652 arg1Of streptomycin,mg/ml
R3759 T7653 T7654 arg1Of streptomycin,;
R3760 T7654 T7650 arg2Of ;,and
R3761 T7656 T7654 arg2Of Technologies,;
R3762 T7656 T7655 arg1Of Technologies,Life
R3763 T7657 T7635 arg3Of ),(
R3764 T7659 T7660 arg1Of 10,%
R3765 T7662 T7658 arg2Of FCS,with
R3766 T7662 T7659 arg1Of FCS,10
R3767 T7662 T7661 arg1Of FCS,heat-inactivated
R3768 T7662 T7663 arg1Of FCS,(
R3769 T7665 T7663 arg2Of Technologies,(
R3770 T7665 T7664 arg1Of Technologies,Life
R3771 T7666 T7663 arg3Of ),(
R3772 T7668 T7609 arg1Of incubated,","
R3773 T7668 T7667 arg2Of incubated,were
R3774 T7668 T7669 arg1Of incubated,at
R3775 T7670 T7669 arg2Of 37°C,at
R3776 T7670 T7671 arg1Of 37°C,in
R3777 T7673 T7671 arg2Of plates,in
R3778 T7673 T7672 arg1Of plates,six-well
R3779 T7673 T7674 arg1Of plates,(
R3780 T7673 T7683 arg1Of plates,for
R3781 T7675 T7676 arg1Of Coster,","
R3782 T7676 T7678 arg1Of ",",","
R3783 T7677 T7676 arg2Of Cambridge,","
R3784 T7678 T7674 arg2Of ",",(
R3785 T7678 T7680 arg1Of ",",","
R3786 T7678 T7681 arg1Of ",",USA
R3787 T7679 T7678 arg2Of MA,","
R3788 T7682 T7674 arg3Of ),(
R3789 T7685 T7683 arg2Of min,for
R3790 T7685 T7684 arg1Of min,45

UBERON-AE

Id Subject Object Predicate Lexical cue
T7341 15-21 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

sentences

Id Subject Object Predicate Lexical cue
T51 0-408 Sentence denotes After removing tissue debris, ST cell suspensions in culture medium (RPMI 1640 medium; Life Technologies, Gaithersburg, MD, USA) supplemented with 25 mM HEPES (2 mM L-glutamine, 2% nonessential amino acids, 100 IU/ml penicillin, and 100 mg/ml streptomycin; Life Technologies) with 10% heat-inactivated FCS (Life Technologies) were incubated at 37°C in six-well plates (Coster, Cambridge, MA, USA) for 45 min.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7946 194-206 Entity denotes amino acids,
T7943 147-177 Entity denotes 25 mM HEPES (2 mM L-glutamine,
T7938 160-176 Entity denotes 2 mM L-glutamine
T7936 30-49 Entity denotes ST cell suspensions
T7935 217-228 Entity denotes penicillin,
T7930 237-255 Entity denotes mg/ml streptomycin

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7893 407-408 . denotes .
T7892 404-407 NN denotes min
T7891 401-403 CD denotes 45
T7890 397-400 IN denotes for
T7889 395-396 -RRB- denotes )
T7888 392-395 NNP denotes USA
T7887 390-391 , denotes ,
T7886 388-390 NNP denotes MA
T7885 386-387 , denotes ,
T7884 377-386 NNP denotes Cambridge
T7883 375-376 , denotes ,
T7882 369-375 NNP denotes Coster
T7881 368-369 -LRB- denotes (
T7880 361-367 NNS denotes plates
T7879 352-360 JJ denotes six-well
T7878 349-351 IN denotes in
T7877 347-348 NNP denotes C
T7876 346-347 CD denotes °
T7875 344-346 CD denotes 37
T7874 341-343 IN denotes at
T7873 331-340 VBN denotes incubated
T7872 326-330 VBD denotes were
T7871 324-325 -RRB- denotes )
T7870 312-324 NNPS denotes Technologies
T7869 307-311 NNP denotes Life
T7868 306-307 -LRB- denotes (
T7867 302-305 NNP denotes FCS
T7866 285-301 JJ denotes heat-inactivated
T7865 283-284 NN denotes %
T7864 281-283 CD denotes 10
T7863 276-280 IN denotes with
T7862 274-275 -RRB- denotes )
T7861 262-274 NNPS denotes Technologies
T7860 257-261 NNP denotes Life
T7859 255-256 : denotes ;
T7858 243-255 NN denotes streptomycin
T7857 237-242 JJ denotes mg/ml
T7856 233-236 CD denotes 100
T7855 229-232 CC denotes and
T7854 227-228 , denotes ,
T7853 217-227 NN denotes penicillin
T7852 211-216 NNP denotes IU/ml
T7851 207-210 CD denotes 100
T7850 205-206 , denotes ,
T7849 200-205 NNS denotes acids
T7848 194-199 JJ denotes amino
T7847 181-193 JJ denotes nonessential
T7846 179-180 NN denotes %
T7845 178-179 CD denotes 2
T7840 159-160 -LRB- denotes (
T7839 153-158 NNP denotes HEPES
T7838 150-152 NNP denotes mM
T7837 147-149 CD denotes 25
T7836 142-146 IN denotes with
T7835 129-141 VBN denotes supplemented
T7834 127-128 -RRB- denotes )
T7833 124-127 NNP denotes USA
T7832 122-123 , denotes ,
T7831 120-122 NNP denotes MD
T7830 118-119 , denotes ,
T7829 106-118 NNP denotes Gaithersburg
T7828 104-105 , denotes ,
T7827 92-104 NNPS denotes Technologies
T7826 87-91 NNP denotes Life
T7825 85-86 : denotes ;
T7824 79-85 NN denotes medium
T7823 74-78 CD denotes 1640
T7822 69-73 NNP denotes RPMI
T7821 68-69 -LRB- denotes (
T7820 61-67 NN denotes medium
T7819 53-60 NN denotes culture
T7818 50-52 IN denotes in
T7817 38-49 NNS denotes suspensions
T7816 33-37 NN denotes cell
T7815 30-32 NNP denotes ST
T7814 28-29 , denotes ,
T7813 22-28 NN denotes debris
T7812 15-21 NN denotes tissue
T7811 6-14 VBG denotes removing
T7810 0-5 IN denotes After
T7844 176-177 , denotes ,
T7843 165-176 NNP denotes L-glutamine
T7842 162-164 NNP denotes mM
T7841 160-161 CD denotes 2
R3911 T7810 T7817 prep After,suspensions
R3912 T7811 T7810 pcomp removing,After
R3913 T7812 T7813 compound tissue,debris
R3914 T7813 T7811 dobj debris,removing
R3915 T7814 T7817 punct ",",suspensions
R3916 T7815 T7817 compound ST,suspensions
R3917 T7816 T7817 compound cell,suspensions
R3918 T7817 T7835 ccomp suspensions,supplemented
R3919 T7818 T7817 prep in,suspensions
R3920 T7819 T7820 compound culture,medium
R3921 T7820 T7818 pobj medium,in
R3922 T7821 T7824 punct (,medium
R3923 T7822 T7824 nmod RPMI,medium
R3924 T7823 T7822 nummod 1640,RPMI
R3925 T7824 T7817 appos medium,suspensions
R3926 T7825 T7835 punct ;,supplemented
R3927 T7826 T7827 compound Life,Technologies
R3928 T7827 T7835 nsubj Technologies,supplemented
R3929 T7828 T7827 punct ",",Technologies
R3930 T7829 T7827 conj Gaithersburg,Technologies
R3931 T7830 T7829 punct ",",Gaithersburg
R3932 T7831 T7829 conj MD,Gaithersburg
R3933 T7832 T7831 punct ",",MD
R3934 T7833 T7831 conj USA,MD
R3935 T7834 T7827 punct ),Technologies
R3936 T7835 T7835 ROOT supplemented,supplemented
R3937 T7836 T7835 prep with,supplemented
R3938 T7837 T7839 nummod 25,HEPES
R3939 T7838 T7839 compound mM,HEPES
R3940 T7839 T7849 nmod HEPES,acids
R3941 T7840 T7843 punct (,L-glutamine
R3942 T7841 T7843 nummod 2,L-glutamine
R3943 T7842 T7843 compound mM,L-glutamine
R3944 T7843 T7839 appos L-glutamine,HEPES
R3945 T7844 T7843 punct ",",L-glutamine
R3946 T7845 T7846 nummod 2,%
R3947 T7846 T7849 nmod %,acids
R3948 T7847 T7849 amod nonessential,acids
R3949 T7848 T7849 amod amino,acids
R3950 T7849 T7836 pobj acids,with
R3951 T7850 T7849 punct ",",acids
R3952 T7851 T7853 nummod 100,penicillin
R3953 T7852 T7853 compound IU/ml,penicillin
R3954 T7853 T7849 conj penicillin,acids
R3955 T7854 T7853 punct ",",penicillin
R3956 T7855 T7853 cc and,penicillin
R3957 T7856 T7858 nummod 100,streptomycin
R3958 T7857 T7858 amod mg/ml,streptomycin
R3959 T7858 T7853 conj streptomycin,penicillin
R3960 T7859 T7861 punct ;,Technologies
R3961 T7860 T7861 compound Life,Technologies
R3962 T7861 T7835 npadvmod Technologies,supplemented
R3963 T7862 T7861 punct ),Technologies
R3964 T7863 T7861 prep with,Technologies
R3965 T7864 T7865 nummod 10,%
R3966 T7865 T7863 pobj %,with
R3967 T7866 T7867 amod heat-inactivated,FCS
R3968 T7867 T7873 nsubjpass FCS,incubated
R3969 T7868 T7870 punct (,Technologies
R3970 T7869 T7870 compound Life,Technologies
R3971 T7870 T7867 appos Technologies,FCS
R3972 T7871 T7870 punct ),Technologies
R3973 T7872 T7873 auxpass were,incubated
R3974 T7873 T7873 ROOT incubated,incubated
R3975 T7874 T7873 prep at,incubated
R3976 T7875 T7876 nummod 37,°
R3977 T7876 T7877 nummod °,C
R3978 T7877 T7874 pobj C,at
R3979 T7878 T7877 prep in,C
R3980 T7879 T7880 amod six-well,plates
R3981 T7880 T7878 pobj plates,in
R3982 T7881 T7877 punct (,C
R3983 T7882 T7877 appos Coster,C
R3984 T7883 T7882 punct ",",Coster
R3985 T7884 T7882 npadvmod Cambridge,Coster
R3986 T7885 T7884 punct ",",Cambridge
R3987 T7886 T7884 conj MA,Cambridge
R3988 T7887 T7886 punct ",",MA
R3989 T7888 T7886 npadvmod USA,MA
R3990 T7889 T7886 punct ),MA
R3991 T7890 T7884 prep for,Cambridge
R3992 T7891 T7892 nummod 45,min
R3993 T7892 T7890 pobj min,for
R3994 T7893 T7882 punct .,Coster