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PMC:1064873 / 836-1019 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T427 138-147 OCCURRENCE denotes abolished
T426 151-163 OCCURRENCE denotes neutralizing
T422 22-29 OCCURRENCE denotes induced
T405 169-171 state denotes IL
T404 148-150 country_code denotes by
T403 97-99 country_code denotes in
T266 182-183 . denotes .
T265 174-182 NN denotes antibody
T264 172-173 CD denotes 6
T263 169-172 NNP denotes IL-
T262 164-169 NN denotes anti-
T251 109-110 CD denotes 4
T250 107-109 NNP denotes CD
T249 100-106 JJ denotes normal
T248 97-99 IN denotes in
T247 81-96 NN denotes phosphorylation
T246 79-80 CD denotes 3
T245 65-78 NN denotes transcription
T244 62-64 IN denotes of
T243 52-61 NN denotes activator
T242 48-51 CC denotes and
T241 37-47 NN denotes transducer
T240 30-36 NN denotes signal
T239 22-29 VBD denotes induced
T238 13-21 NNS denotes patients
T237 10-12 NNP denotes RA
T236 5-9 IN denotes from
T235 0-4 NNP denotes Sera
T261 151-163 VBG denotes neutralizing
T260 148-150 IN denotes by
T259 138-147 VBN denotes abolished
T258 131-137 RB denotes mostly
T257 127-130 VBD denotes was
T256 121-126 WDT denotes which
T255 119-120 , denotes ,
T254 114-119 NNS denotes cells
T253 112-113 NN denotes T
T252 110-111 NN denotes +

biosemtest

Id Subject Object Predicate Lexical cue
T866 174-182 UMLS/C0003241 denotes antibody
T863 100-106 UMLS/C0205307 denotes normal
T846 0-4 UMLS/C1151254 denotes Sera
T829 13-21 UMLS/C1705908 denotes patients
T820 22-29 UMLS/C0205263 denotes induced
T800 100-106 UMLS/C2347086 denotes normal
T704 112-119 UMLS/C0039194 denotes T cells
T685 0-4 UMLS/C0229671 denotes Sera
T670 0-4 UMLS/C1546774 denotes Sera
T656 30-80 UP/Q19S50 denotes signal transducer and activator of transcription 3
T584 13-21 UMLS/C0030705 denotes patients
T564 13-21 UMLS/C1578479 denotes patients
T557 13-21 UMLS/C1578483 denotes patients
T553 13-21 UMLS/C1578480 denotes patients
T549 13-21 UMLS/C1578481 denotes patients
T544 13-21 UMLS/C1578486 denotes patients
T539 13-21 UMLS/C1578484 denotes patients
T534 13-21 UMLS/C1578485 denotes patients
T531 174-182 UMLS/C0021027 denotes antibody
T476 30-80 UP/P52631 denotes signal transducer and activator of transcription 3
T473 100-106 UMLS/C1550457 denotes normal
T471 30-80 UP/P42227 denotes signal transducer and activator of transcription 3
T464 30-80 UP/P40763 denotes signal transducer and activator of transcription 3
T457 81-96 UMLS/C0031715 denotes phosphorylation
T451 30-80 UP/Q6DV79 denotes signal transducer and activator of transcription 3
T448 100-106 UMLS/C1551394 denotes normal
T772 100-106 UMLS/C0439166 denotes normal
T764 0-4 UMLS/C1550100 denotes Sera
T754 30-80 UP/P61635 denotes signal transducer and activator of transcription 3
T751 13-21 UMLS/C1550655 denotes patients
T745 30-80 UMLS/C0253050 denotes signal transducer and activator of transcription 3
T735 100-106 UMLS/C1873497 denotes normal
T726 174-182 UMLS/C1621287 denotes antibody
T486 100-106 UMLS/C1704701 denotes normal

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1314 174-182 NN denotes antibody
T1313 164-173 JJ denotes anti-IL-6
T1312 151-163 VB denotes neutralizing
T1311 148-150 IN denotes by
T1310 138-147 VB denotes abolished
T1309 131-137 RB denotes mostly
T1308 127-130 VB denotes was
T1307 121-126 WDT denotes which
T1306 119-120 -COMMA- denotes ,
T1305 114-119 NN denotes cells
T1304 112-113 NN denotes T
T1303 107-111 JJ denotes CD4+
T1302 100-106 JJ denotes normal
T1301 97-99 IN denotes in
T1300 81-96 NN denotes phosphorylation
T1299 79-80 CD denotes 3
T1298 65-78 NN denotes transcription
T1297 62-64 IN denotes of
T1296 52-61 NN denotes activator
T1295 48-51 CC denotes and
T1294 37-47 NN denotes transducer
T1293 30-36 NN denotes signal
T1292 22-29 VB denotes induced
T1291 13-21 NN denotes patients
T1290 10-12 NN denotes RA
T1289 5-9 IN denotes from
T1288 0-4 NN denotes Sera
R187 T1288 T1289 arg1Of Sera,from
R188 T1288 T1292 arg1Of Sera,induced
R189 T1291 T1289 arg2Of patients,from
R190 T1291 T1290 arg1Of patients,RA
R191 T1292 T1301 arg1Of induced,in
R192 T1294 T1295 arg1Of transducer,and
R193 T1296 T1295 arg2Of activator,and
R194 T1300 T1292 arg2Of phosphorylation,induced
R195 T1300 T1293 arg1Of phosphorylation,signal
R196 T1300 T1294 arg1Of phosphorylation,transducer
R197 T1300 T1296 arg1Of phosphorylation,activator
R198 T1300 T1297 arg1Of phosphorylation,of
R199 T1300 T1298 arg1Of phosphorylation,transcription
R200 T1300 T1299 arg1Of phosphorylation,3
R201 T1305 T1301 arg2Of cells,in
R202 T1305 T1302 arg1Of cells,normal
R203 T1305 T1303 arg1Of cells,CD4+
R204 T1305 T1304 arg1Of cells,T
R205 T1305 T1306 arg1Of cells,","
R206 T1305 T1307 arg1Of cells,which
R207 T1305 T1308 arg1Of cells,was
R208 T1305 T1310 arg2Of cells,abolished
R209 T1310 T1308 arg2Of abolished,was
R210 T1310 T1309 arg1Of abolished,mostly
R211 T1310 T1311 arg1Of abolished,by
R212 T1312 T1311 arg2Of neutralizing,by
R213 T1314 T1312 arg2Of antibody,neutralizing
R214 T1314 T1313 arg1Of antibody,anti-IL-6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T982 30-80 Protein denotes signal transducer and activator of transcription 3
T983 107-110 Protein denotes CD4
T984 169-173 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1086 169-173 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T1044 107-110 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-BP

Id Subject Object Predicate Lexical cue
T911 65-78 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T909 81-96 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T1024 174-182 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T1023 174-182 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T1018 114-119 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T1013 174-182 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T1011 169-173 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

sentences

Id Subject Object Predicate Lexical cue
T886 0-183 Sentence denotes Sera from RA patients induced signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells, which was mostly abolished by neutralizing anti-IL-6 antibody.
T6 0-183 Sentence denotes Sera from RA patients induced signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells, which was mostly abolished by neutralizing anti-IL-6 antibody.

simple1

Id Subject Object Predicate Lexical cue
T1137 30-80 Protein denotes signal transducer and activator of transcription 3
T1138 107-110 Protein denotes CD4
T1139 169-173 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1936 169-173 Protein denotes IL-6
T1935 107-110 Protein denotes CD4
T1934 30-80 Protein denotes signal transducer and activator of transcription 3
T1960 138-147 Negative_regulation denotes abolished
T1959 81-96 Phosphorylation denotes phosphorylation
T1958 22-29 Positive_regulation denotes induced
R633 T1934 T1960 themeOf signal transducer and activator of transcription 3,abolished
R634 T1934 T1958 themeOf signal transducer and activator of transcription 3,induced
R635 T1934 T1959 themeOf signal transducer and activator of transcription 3,phosphorylation
R642 T1959 T1958 themeOf phosphorylation,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1455 22-29 Positive_regulation denotes induced
T1454 81-96 Phosphorylation denotes phosphorylation
T1432 169-173 Protein denotes IL-6
T1431 107-110 Protein denotes CD4
T1430 30-80 Protein denotes signal transducer and activator of transcription 3
R323 T1430 T1455 themeOf signal transducer and activator of transcription 3,induced
R324 T1430 T1454 themeOf signal transducer and activator of transcription 3,phosphorylation
R329 T1454 T1455 themeOf phosphorylation,induced

DLUT931

Id Subject Object Predicate Lexical cue
T1501 22-29 Positive_regulation denotes induced
T1500 81-96 Phosphorylation denotes phosphorylation
T1477 169-173 Protein denotes IL-6
T1476 107-110 Protein denotes CD4
T1475 30-80 Protein denotes signal transducer and activator of transcription 3
R338 T1475 T1500 themeOf signal transducer and activator of transcription 3,phosphorylation
R349 T1500 T1501 themeOf phosphorylation,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1912 151-182 Regulation denotes neutralizing anti-IL-6 antibody
T1892 10-12 Protein denotes RA
T1884 164-182 Protein denotes anti-IL-6 antibody
T1879 0-21 Protein denotes Sera from RA patients
T1877 100-119 Entity denotes normal CD4+ T cells
T1876 30-80 Protein denotes signal transducer and activator of transcription 3
T1914 30-119 Phosphorylation denotes signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells
R615 T1876 T1914 themeOf signal transducer and activator of transcription 3,signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells
R618 T1884 T1912 themeOf anti-IL-6 antibody,neutralizing anti-IL-6 antibody

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1718 182-183 . denotes .
T1717 174-182 NN denotes antibody
T1716 164-173 JJ denotes anti-IL-6
T1715 151-163 VBG denotes neutralizing
T1714 148-150 IN denotes by
T1713 138-147 VBN denotes abolished
T1712 131-137 RB denotes mostly
T1711 127-130 VBD denotes was
T1710 121-126 WDT denotes which
T1709 119-120 , denotes ,
T1708 114-119 NNS denotes cells
T1707 112-113 NNP denotes T
T1706 110-111 CD denotes +
T1705 107-110 NNP denotes CD4
T1704 100-106 JJ denotes normal
T1703 97-99 IN denotes in
T1702 81-96 NN denotes phosphorylation
T1701 79-80 CD denotes 3
T1700 65-78 NN denotes transcription
T1699 62-64 IN denotes of
T1698 52-61 NN denotes activator
T1697 48-51 CC denotes and
T1696 37-47 NN denotes transducer
T1695 30-36 NN denotes signal
T1694 22-29 VBD denotes induced
T1693 13-21 NNS denotes patients
T1692 10-12 NNP denotes RA
T1691 5-9 IN denotes from
T1690 0-4 NNP denotes Sera
R463 T1690 T1694 nsubj Sera,induced
R464 T1691 T1690 prep from,Sera
R465 T1692 T1693 compound RA,patients
R466 T1693 T1691 pobj patients,from
R467 T1694 T1694 ROOT induced,induced
R468 T1695 T1696 compound signal,transducer
R469 T1696 T1694 dobj transducer,induced
R470 T1697 T1696 cc and,transducer
R471 T1698 T1696 conj activator,transducer
R472 T1699 T1698 prep of,activator
R473 T1700 T1699 pobj transcription,of
R474 T1701 T1702 nummod 3,phosphorylation
R475 T1702 T1696 appos phosphorylation,transducer
R476 T1703 T1702 prep in,phosphorylation
R477 T1704 T1708 amod normal,cells
R478 T1705 T1708 compound CD4,cells
R479 T1706 T1708 nummod +,cells
R480 T1707 T1708 compound T,cells
R481 T1708 T1703 pobj cells,in
R482 T1709 T1708 punct ",",cells
R483 T1710 T1713 nsubjpass which,abolished
R484 T1711 T1713 auxpass was,abolished
R485 T1712 T1713 advmod mostly,abolished
R486 T1713 T1702 relcl abolished,phosphorylation
R487 T1714 T1713 prep by,abolished
R488 T1715 T1714 pcomp neutralizing,by
R489 T1716 T1717 amod anti-IL-6,antibody
R490 T1717 T1715 dobj antibody,neutralizing
R491 T1718 T1694 punct .,induced

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1108 107-110 Protein denotes CD4
T1109 164-182 Protein denotes anti-IL-6 antibody

testone

Id Subject Object Predicate Lexical cue
T70 138-147 Negative_regulation denotes abolished
T69 81-96 Phosphorylation denotes phosphorylation
T49 169-173 Protein denotes IL-6
T48 107-110 Protein denotes CD4
T47 30-80 Protein denotes signal transducer and activator of transcription 3
R7 T47 T69 themeOf signal transducer and activator of transcription 3,phosphorylation
R8 T49 T70 causeOf IL-6,abolished