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PMC:1064873 / 809-1019 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T427 165-174 OCCURRENCE denotes abolished
T426 178-190 OCCURRENCE denotes neutralizing
T422 49-56 OCCURRENCE denotes induced
T405 196-198 state denotes IL
T404 175-177 country_code denotes by
T403 124-126 country_code denotes in
T402 20-22 state denotes IL
T401 17-19 country_code denotes ml
T400 14-16 country_code denotes ng
T266 209-210 . denotes .
T265 201-209 NN denotes antibody
T264 199-200 CD denotes 6
T263 196-199 NNP denotes IL-
T262 191-196 NN denotes anti-
T251 136-137 CD denotes 4
T250 134-136 NNP denotes CD
T249 127-133 JJ denotes normal
T248 124-126 IN denotes in
T247 108-123 NN denotes phosphorylation
T246 106-107 CD denotes 3
T245 92-105 NN denotes transcription
T244 89-91 IN denotes of
T243 79-88 NN denotes activator
T242 75-78 CC denotes and
T241 64-74 NN denotes transducer
T240 57-63 NN denotes signal
T239 49-56 VBD denotes induced
T238 40-48 NNS denotes patients
T237 37-39 NNP denotes RA
T236 32-36 IN denotes from
T235 27-31 NNP denotes Sera
T234 25-26 . denotes .
T233 23-25 CD denotes 10
T232 20-23 NNP denotes IL-
T231 17-19 NN denotes ml
T230 16-17 NN denotes /
T229 14-16 NN denotes ng
T228 12-13 CD denotes 1
T227 9-11 IN denotes of
T226 0-8 NN denotes presence
T261 178-190 VBG denotes neutralizing
T260 175-177 IN denotes by
T259 165-174 VBN denotes abolished
T258 158-164 RB denotes mostly
T257 154-157 VBD denotes was
T256 148-153 WDT denotes which
T255 146-147 , denotes ,
T254 141-146 NNS denotes cells
T253 139-140 NN denotes T
T252 137-138 NN denotes +

biosemtest

Id Subject Object Predicate Lexical cue
T868 14-19 UMLS/C0439275 denotes ng/ml
T866 201-209 UMLS/C0003241 denotes antibody
T863 127-133 UMLS/C0205307 denotes normal
T846 27-31 UMLS/C1151254 denotes Sera
T829 40-48 UMLS/C1705908 denotes patients
T820 49-56 UMLS/C0205263 denotes induced
T800 127-133 UMLS/C2347086 denotes normal
T704 139-146 UMLS/C0039194 denotes T cells
T685 27-31 UMLS/C0229671 denotes Sera
T680 20-25 UMLS/C1149215 denotes IL-10
T670 27-31 UMLS/C1546774 denotes Sera
T656 57-107 UP/Q19S50 denotes signal transducer and activator of transcription 3
T614 20-25 UMLS/C1522550 denotes IL-10
T607 20-25 UMLS/C1334098 denotes IL-10
T584 40-48 UMLS/C0030705 denotes patients
T581 0-8 UMLS/C0392148 denotes presence
T564 40-48 UMLS/C1578479 denotes patients
T557 40-48 UMLS/C1578483 denotes patients
T553 40-48 UMLS/C1578480 denotes patients
T549 40-48 UMLS/C1578481 denotes patients
T544 40-48 UMLS/C1578486 denotes patients
T539 40-48 UMLS/C1578484 denotes patients
T534 40-48 UMLS/C1578485 denotes patients
T531 201-209 UMLS/C0021027 denotes antibody
T476 57-107 UP/P52631 denotes signal transducer and activator of transcription 3
T473 127-133 UMLS/C1550457 denotes normal
T471 57-107 UP/P42227 denotes signal transducer and activator of transcription 3
T464 57-107 UP/P40763 denotes signal transducer and activator of transcription 3
T457 108-123 UMLS/C0031715 denotes phosphorylation
T451 57-107 UP/Q6DV79 denotes signal transducer and activator of transcription 3
T448 127-133 UMLS/C1551394 denotes normal
T772 127-133 UMLS/C0439166 denotes normal
T764 27-31 UMLS/C1550100 denotes Sera
T754 57-107 UP/P61635 denotes signal transducer and activator of transcription 3
T751 40-48 UMLS/C1550655 denotes patients
T745 57-107 UMLS/C0253050 denotes signal transducer and activator of transcription 3
T735 127-133 UMLS/C1873497 denotes normal
T729 0-8 UMLS/C0150312 denotes presence
T726 201-209 UMLS/C1621287 denotes antibody
T497 20-25 UMLS/C0085295 denotes IL-10
T486 127-133 UMLS/C1704701 denotes normal

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1314 201-209 NN denotes antibody
T1313 191-200 JJ denotes anti-IL-6
T1312 178-190 VB denotes neutralizing
T1311 175-177 IN denotes by
T1310 165-174 VB denotes abolished
T1309 158-164 RB denotes mostly
T1308 154-157 VB denotes was
T1307 148-153 WDT denotes which
T1306 146-147 -COMMA- denotes ,
T1305 141-146 NN denotes cells
T1304 139-140 NN denotes T
T1303 134-138 JJ denotes CD4+
T1302 127-133 JJ denotes normal
T1301 124-126 IN denotes in
T1300 108-123 NN denotes phosphorylation
T1299 106-107 CD denotes 3
T1298 92-105 NN denotes transcription
T1297 89-91 IN denotes of
T1296 79-88 NN denotes activator
T1295 75-78 CC denotes and
T1294 64-74 NN denotes transducer
T1293 57-63 NN denotes signal
T1292 49-56 VB denotes induced
T1291 40-48 NN denotes patients
T1290 37-39 NN denotes RA
T1289 32-36 IN denotes from
T1288 27-31 NN denotes Sera
T1287 20-25 NN denotes IL-10
T1286 14-19 NN denotes ng/ml
T1285 12-13 CD denotes 1
T1284 9-11 IN denotes of
T1283 0-8 NN denotes presence
R183 T1283 T1284 arg1Of presence,of
R184 T1285 T1286 arg1Of 1,ng/ml
R185 T1287 T1284 arg2Of IL-10,of
R186 T1287 T1285 arg1Of IL-10,1
R187 T1288 T1289 arg1Of Sera,from
R188 T1288 T1292 arg1Of Sera,induced
R189 T1291 T1289 arg2Of patients,from
R190 T1291 T1290 arg1Of patients,RA
R191 T1292 T1301 arg1Of induced,in
R192 T1294 T1295 arg1Of transducer,and
R193 T1296 T1295 arg2Of activator,and
R194 T1300 T1292 arg2Of phosphorylation,induced
R195 T1300 T1293 arg1Of phosphorylation,signal
R196 T1300 T1294 arg1Of phosphorylation,transducer
R197 T1300 T1296 arg1Of phosphorylation,activator
R198 T1300 T1297 arg1Of phosphorylation,of
R199 T1300 T1298 arg1Of phosphorylation,transcription
R200 T1300 T1299 arg1Of phosphorylation,3
R201 T1305 T1301 arg2Of cells,in
R202 T1305 T1302 arg1Of cells,normal
R203 T1305 T1303 arg1Of cells,CD4+
R204 T1305 T1304 arg1Of cells,T
R205 T1305 T1306 arg1Of cells,","
R206 T1305 T1307 arg1Of cells,which
R207 T1305 T1308 arg1Of cells,was
R208 T1305 T1310 arg2Of cells,abolished
R209 T1310 T1308 arg2Of abolished,was
R210 T1310 T1309 arg1Of abolished,mostly
R211 T1310 T1311 arg1Of abolished,by
R212 T1312 T1311 arg2Of neutralizing,by
R213 T1314 T1312 arg2Of antibody,neutralizing
R214 T1314 T1313 arg1Of antibody,anti-IL-6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T981 20-25 Protein denotes IL-10
T982 57-107 Protein denotes signal transducer and activator of transcription 3
T983 134-137 Protein denotes CD4
T984 196-200 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1086 196-200 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T1033 20-25 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T1044 134-137 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-BP

Id Subject Object Predicate Lexical cue
T911 92-105 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T909 108-123 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T1024 201-209 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T1023 201-209 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T1018 141-146 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T1013 201-209 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T1011 196-200 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T1002 20-25 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T886 27-210 Sentence denotes Sera from RA patients induced signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells, which was mostly abolished by neutralizing anti-IL-6 antibody.
T6 27-210 Sentence denotes Sera from RA patients induced signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells, which was mostly abolished by neutralizing anti-IL-6 antibody.

simple1

Id Subject Object Predicate Lexical cue
T1136 20-25 Protein denotes IL-10
T1137 57-107 Protein denotes signal transducer and activator of transcription 3
T1138 134-137 Protein denotes CD4
T1139 196-200 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1936 196-200 Protein denotes IL-6
T1935 134-137 Protein denotes CD4
T1934 57-107 Protein denotes signal transducer and activator of transcription 3
T1933 20-25 Protein denotes IL-10
T1960 165-174 Negative_regulation denotes abolished
T1959 108-123 Phosphorylation denotes phosphorylation
T1958 49-56 Positive_regulation denotes induced
R633 T1934 T1960 themeOf signal transducer and activator of transcription 3,abolished
R634 T1934 T1958 themeOf signal transducer and activator of transcription 3,induced
R635 T1934 T1959 themeOf signal transducer and activator of transcription 3,phosphorylation
R642 T1959 T1958 themeOf phosphorylation,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1455 49-56 Positive_regulation denotes induced
T1454 108-123 Phosphorylation denotes phosphorylation
T1432 196-200 Protein denotes IL-6
T1431 134-137 Protein denotes CD4
T1430 57-107 Protein denotes signal transducer and activator of transcription 3
T1429 20-25 Protein denotes IL-10
R323 T1430 T1455 themeOf signal transducer and activator of transcription 3,induced
R324 T1430 T1454 themeOf signal transducer and activator of transcription 3,phosphorylation
R329 T1454 T1455 themeOf phosphorylation,induced

DLUT931

Id Subject Object Predicate Lexical cue
T1501 49-56 Positive_regulation denotes induced
T1500 108-123 Phosphorylation denotes phosphorylation
T1477 196-200 Protein denotes IL-6
T1476 134-137 Protein denotes CD4
T1475 57-107 Protein denotes signal transducer and activator of transcription 3
T1474 20-25 Protein denotes IL-10
R338 T1475 T1500 themeOf signal transducer and activator of transcription 3,phosphorylation
R349 T1500 T1501 themeOf phosphorylation,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1912 178-209 Regulation denotes neutralizing anti-IL-6 antibody
T1892 37-39 Protein denotes RA
T1884 191-209 Protein denotes anti-IL-6 antibody
T1883 9-25 Protein denotes of 1 ng/ml IL-10
T1879 27-48 Protein denotes Sera from RA patients
T1877 127-146 Entity denotes normal CD4+ T cells
T1876 57-107 Protein denotes signal transducer and activator of transcription 3
T1914 57-146 Phosphorylation denotes signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells
R615 T1876 T1914 themeOf signal transducer and activator of transcription 3,signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells
R618 T1884 T1912 themeOf anti-IL-6 antibody,neutralizing anti-IL-6 antibody

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1718 209-210 . denotes .
T1717 201-209 NN denotes antibody
T1716 191-200 JJ denotes anti-IL-6
T1715 178-190 VBG denotes neutralizing
T1714 175-177 IN denotes by
T1713 165-174 VBN denotes abolished
T1712 158-164 RB denotes mostly
T1711 154-157 VBD denotes was
T1710 148-153 WDT denotes which
T1709 146-147 , denotes ,
T1708 141-146 NNS denotes cells
T1707 139-140 NNP denotes T
T1706 137-138 CD denotes +
T1705 134-137 NNP denotes CD4
T1704 127-133 JJ denotes normal
T1703 124-126 IN denotes in
T1702 108-123 NN denotes phosphorylation
T1701 106-107 CD denotes 3
T1700 92-105 NN denotes transcription
T1699 89-91 IN denotes of
T1698 79-88 NN denotes activator
T1697 75-78 CC denotes and
T1696 64-74 NN denotes transducer
T1695 57-63 NN denotes signal
T1694 49-56 VBD denotes induced
T1693 40-48 NNS denotes patients
T1692 37-39 NNP denotes RA
T1691 32-36 IN denotes from
T1690 27-31 NNP denotes Sera
T1689 25-26 . denotes .
T1688 20-25 NN denotes IL-10
T1687 14-19 NN denotes ng/ml
T1686 12-13 CD denotes 1
T1685 9-11 IN denotes of
T1684 0-8 NN denotes presence
R458 T1685 T1684 prep of,presence
R459 T1686 T1688 nummod 1,IL-10
R460 T1687 T1688 compound ng/ml,IL-10
R461 T1688 T1685 pobj IL-10,of
R463 T1690 T1694 nsubj Sera,induced
R464 T1691 T1690 prep from,Sera
R465 T1692 T1693 compound RA,patients
R466 T1693 T1691 pobj patients,from
R467 T1694 T1694 ROOT induced,induced
R468 T1695 T1696 compound signal,transducer
R469 T1696 T1694 dobj transducer,induced
R470 T1697 T1696 cc and,transducer
R471 T1698 T1696 conj activator,transducer
R472 T1699 T1698 prep of,activator
R473 T1700 T1699 pobj transcription,of
R474 T1701 T1702 nummod 3,phosphorylation
R475 T1702 T1696 appos phosphorylation,transducer
R476 T1703 T1702 prep in,phosphorylation
R477 T1704 T1708 amod normal,cells
R478 T1705 T1708 compound CD4,cells
R479 T1706 T1708 nummod +,cells
R480 T1707 T1708 compound T,cells
R481 T1708 T1703 pobj cells,in
R482 T1709 T1708 punct ",",cells
R483 T1710 T1713 nsubjpass which,abolished
R484 T1711 T1713 auxpass was,abolished
R485 T1712 T1713 advmod mostly,abolished
R486 T1713 T1702 relcl abolished,phosphorylation
R487 T1714 T1713 prep by,abolished
R488 T1715 T1714 pcomp neutralizing,by
R489 T1716 T1717 amod anti-IL-6,antibody
R490 T1717 T1715 dobj antibody,neutralizing
R491 T1718 T1694 punct .,induced

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1108 134-137 Protein denotes CD4
T1109 191-209 Protein denotes anti-IL-6 antibody

testone

Id Subject Object Predicate Lexical cue
T70 165-174 Negative_regulation denotes abolished
T69 108-123 Phosphorylation denotes phosphorylation
T49 196-200 Protein denotes IL-6
T48 134-137 Protein denotes CD4
T47 57-107 Protein denotes signal transducer and activator of transcription 3
T46 20-25 Protein denotes IL-10
R7 T47 T69 themeOf signal transducer and activator of transcription 3,phosphorylation
R8 T49 T70 causeOf IL-6,abolished