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PMC:1064873 / 719-1033 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T427 255-264 OCCURRENCE denotes abolished
T426 268-280 OCCURRENCE denotes neutralizing
T422 139-146 OCCURRENCE denotes induced
T405 286-288 state denotes IL
T404 265-267 country_code denotes by
T403 214-216 country_code denotes in
T402 110-112 state denotes IL
T401 107-109 country_code denotes ml
T400 104-106 country_code denotes ng
T399 83-85 country_code denotes by
T398 62-64 country_code denotes it
T397 4-6 country_code denotes in
T267 301-314 NNP denotes Preincubation
T266 299-300 . denotes .
T265 291-299 NN denotes antibody
T264 289-290 CD denotes 6
T263 286-289 NNP denotes IL-
T262 281-286 NN denotes anti-
T251 226-227 CD denotes 4
T250 224-226 NNP denotes CD
T249 217-223 JJ denotes normal
T248 214-216 IN denotes in
T247 198-213 NN denotes phosphorylation
T246 196-197 CD denotes 3
T245 182-195 NN denotes transcription
T244 179-181 IN denotes of
T243 169-178 NN denotes activator
T242 165-168 CC denotes and
T241 154-164 NN denotes transducer
T240 147-153 NN denotes signal
T239 139-146 VBD denotes induced
T238 130-138 NNS denotes patients
T237 127-129 NNP denotes RA
T236 122-126 IN denotes from
T235 117-121 NNP denotes Sera
T234 115-116 . denotes .
T233 113-115 CD denotes 10
T232 110-113 NNP denotes IL-
T231 107-109 NN denotes ml
T230 106-107 NN denotes /
T229 104-106 NN denotes ng
T228 102-103 CD denotes 1
T227 99-101 IN denotes of
T226 90-98 NN denotes presence
T225 86-89 DT denotes the
T224 83-85 IN denotes by
T223 73-82 JJ denotes augmented
T222 69-72 RB denotes not
T221 65-68 VBD denotes was
T220 62-64 PRP denotes it
T219 58-61 CC denotes but
T218 56-57 , denotes ,
T217 54-56 NNP denotes RA
T216 51-53 IN denotes of
T215 45-50 NNS denotes cells
T214 43-44 NN denotes T
T213 41-42 NN denotes +
T212 40-41 CD denotes 4
T211 38-40 NNP denotes CD
T210 31-37 NN denotes tissue
T209 22-30 NN denotes synovial
T208 18-21 CC denotes and
T207 12-17 NN denotes blood
T206 7-11 DT denotes both
T205 4-6 IN denotes in
T261 268-280 VBG denotes neutralizing
T260 265-267 IN denotes by
T259 255-264 VBN denotes abolished
T258 248-254 RB denotes mostly
T257 244-247 VBD denotes was
T256 238-243 WDT denotes which
T255 236-237 , denotes ,
T254 231-236 NNS denotes cells
T253 229-230 NN denotes T
T252 227-228 NN denotes +

biosemtest

Id Subject Object Predicate Lexical cue
T868 104-109 UMLS/C0439275 denotes ng/ml
T866 291-299 UMLS/C0003241 denotes antibody
T863 217-223 UMLS/C0205307 denotes normal
T846 117-121 UMLS/C1151254 denotes Sera
T839 69-72 UMLS/C1518422 denotes not
T829 130-138 UMLS/C1705908 denotes patients
T820 139-146 UMLS/C0205263 denotes induced
T800 217-223 UMLS/C2347086 denotes normal
T704 229-236 UMLS/C0039194 denotes T cells
T703 43-50 UMLS/C0039194 denotes T cells
T691 12-17 UMLS/C0229664 denotes blood
T685 117-121 UMLS/C0229671 denotes Sera
T680 110-115 UMLS/C1149215 denotes IL-10
T670 117-121 UMLS/C1546774 denotes Sera
T656 147-197 UP/Q19S50 denotes signal transducer and activator of transcription 3
T614 110-115 UMLS/C1522550 denotes IL-10
T607 110-115 UMLS/C1334098 denotes IL-10
T584 130-138 UMLS/C0030705 denotes patients
T581 90-98 UMLS/C0392148 denotes presence
T564 130-138 UMLS/C1578479 denotes patients
T557 130-138 UMLS/C1578483 denotes patients
T553 130-138 UMLS/C1578480 denotes patients
T549 130-138 UMLS/C1578481 denotes patients
T544 130-138 UMLS/C1578486 denotes patients
T539 130-138 UMLS/C1578484 denotes patients
T534 130-138 UMLS/C1578485 denotes patients
T531 291-299 UMLS/C0021027 denotes antibody
T529 22-37 UMLS/C1267208 denotes synovial tissue
T526 12-17 UMLS/C0392895 denotes blood
T476 147-197 UP/P52631 denotes signal transducer and activator of transcription 3
T473 217-223 UMLS/C1550457 denotes normal
T471 147-197 UP/P42227 denotes signal transducer and activator of transcription 3
T464 147-197 UP/P40763 denotes signal transducer and activator of transcription 3
T457 198-213 UMLS/C0031715 denotes phosphorylation
T451 147-197 UP/Q6DV79 denotes signal transducer and activator of transcription 3
T448 217-223 UMLS/C1551394 denotes normal
T777 73-82 UMLS/C0205217 denotes augmented
T772 217-223 UMLS/C0439166 denotes normal
T769 12-17 UMLS/C0005767 denotes blood
T766 12-17 UMLS/C0005768 denotes blood
T764 117-121 UMLS/C1550100 denotes Sera
T754 147-197 UP/P61635 denotes signal transducer and activator of transcription 3
T751 130-138 UMLS/C1550655 denotes patients
T745 147-197 UMLS/C0253050 denotes signal transducer and activator of transcription 3
T735 217-223 UMLS/C1873497 denotes normal
T729 90-98 UMLS/C0150312 denotes presence
T726 291-299 UMLS/C1621287 denotes antibody
T497 110-115 UMLS/C0085295 denotes IL-10
T486 217-223 UMLS/C1704701 denotes normal
T484 58-61 UMLS/C0005341 denotes but

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1315 301-314 NN denotes Preincubation
T1314 291-299 NN denotes antibody
T1313 281-290 JJ denotes anti-IL-6
T1312 268-280 VB denotes neutralizing
T1311 265-267 IN denotes by
T1310 255-264 VB denotes abolished
T1309 248-254 RB denotes mostly
T1308 244-247 VB denotes was
T1307 238-243 WDT denotes which
T1306 236-237 -COMMA- denotes ,
T1305 231-236 NN denotes cells
T1304 229-230 NN denotes T
T1303 224-228 JJ denotes CD4+
T1302 217-223 JJ denotes normal
T1301 214-216 IN denotes in
T1300 198-213 NN denotes phosphorylation
T1299 196-197 CD denotes 3
T1298 182-195 NN denotes transcription
T1297 179-181 IN denotes of
T1296 169-178 NN denotes activator
T1295 165-168 CC denotes and
T1294 154-164 NN denotes transducer
T1293 147-153 NN denotes signal
T1292 139-146 VB denotes induced
T1291 130-138 NN denotes patients
T1290 127-129 NN denotes RA
T1289 122-126 IN denotes from
T1288 117-121 NN denotes Sera
T1287 110-115 NN denotes IL-10
T1286 104-109 NN denotes ng/ml
T1285 102-103 CD denotes 1
T1284 99-101 IN denotes of
T1283 90-98 NN denotes presence
T1282 86-89 DT denotes the
T1281 83-85 IN denotes by
T1280 73-82 VB denotes augmented
T1279 69-72 RB denotes not
T1278 65-68 VB denotes was
T1277 62-64 PRP denotes it
T1276 58-61 CC denotes but
T1275 56-57 -COMMA- denotes ,
T1274 54-56 NN denotes RA
T1273 51-53 IN denotes of
T1272 45-50 NN denotes cells
T1271 43-44 NN denotes T
T1270 38-42 JJ denotes CD4+
T1269 31-37 NN denotes tissue
T1268 22-30 JJ denotes synovial
T1267 18-21 CC denotes and
T1266 12-17 NN denotes blood
T1265 7-11 CC denotes both
T1264 4-6 IN denotes in
R164 T1266 T1267 arg1Of blood,and
R165 T1267 T1264 arg2Of and,in
R166 T1267 T1265 arg1Of and,both
R167 T1272 T1267 arg2Of cells,and
R168 T1272 T1268 arg1Of cells,synovial
R169 T1272 T1269 arg1Of cells,tissue
R170 T1272 T1270 arg1Of cells,CD4+
R171 T1272 T1271 arg1Of cells,T
R172 T1272 T1273 arg1Of cells,of
R173 T1274 T1273 arg2Of RA,of
R174 T1276 T1275 arg1Of but,","
R175 T1277 T1278 arg1Of it,was
R176 T1277 T1280 arg2Of it,augmented
R177 T1280 T1276 arg2Of augmented,but
R178 T1280 T1278 arg2Of augmented,was
R179 T1280 T1279 arg1Of augmented,not
R180 T1280 T1281 arg1Of augmented,by
R181 T1283 T1281 arg2Of presence,by
R182 T1283 T1282 arg1Of presence,the
R183 T1283 T1284 arg1Of presence,of
R184 T1285 T1286 arg1Of 1,ng/ml
R185 T1287 T1284 arg2Of IL-10,of
R186 T1287 T1285 arg1Of IL-10,1
R187 T1288 T1289 arg1Of Sera,from
R188 T1288 T1292 arg1Of Sera,induced
R189 T1291 T1289 arg2Of patients,from
R190 T1291 T1290 arg1Of patients,RA
R191 T1292 T1301 arg1Of induced,in
R192 T1294 T1295 arg1Of transducer,and
R193 T1296 T1295 arg2Of activator,and
R194 T1300 T1292 arg2Of phosphorylation,induced
R195 T1300 T1293 arg1Of phosphorylation,signal
R196 T1300 T1294 arg1Of phosphorylation,transducer
R197 T1300 T1296 arg1Of phosphorylation,activator
R198 T1300 T1297 arg1Of phosphorylation,of
R199 T1300 T1298 arg1Of phosphorylation,transcription
R200 T1300 T1299 arg1Of phosphorylation,3
R201 T1305 T1301 arg2Of cells,in
R202 T1305 T1302 arg1Of cells,normal
R203 T1305 T1303 arg1Of cells,CD4+
R204 T1305 T1304 arg1Of cells,T
R205 T1305 T1306 arg1Of cells,","
R206 T1305 T1307 arg1Of cells,which
R207 T1305 T1308 arg1Of cells,was
R208 T1305 T1310 arg2Of cells,abolished
R209 T1310 T1308 arg2Of abolished,was
R210 T1310 T1309 arg1Of abolished,mostly
R211 T1310 T1311 arg1Of abolished,by
R212 T1312 T1311 arg2Of neutralizing,by
R213 T1314 T1312 arg2Of antibody,neutralizing
R214 T1314 T1313 arg1Of antibody,anti-IL-6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T980 38-41 Protein denotes CD4
T981 110-115 Protein denotes IL-10
T982 147-197 Protein denotes signal transducer and activator of transcription 3
T983 224-227 Protein denotes CD4
T984 286-290 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1086 286-290 http://www.uniprot.org/uniprot/P05231 denotes IL-6
T1033 110-115 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T1043 38-41 http://www.uniprot.org/uniprot/P01730 denotes CD4
T1044 224-227 http://www.uniprot.org/uniprot/P01730 denotes CD4

UBERON-AE

Id Subject Object Predicate Lexical cue
T436 31-37 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T435 12-17 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T911 182-195 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T909 198-213 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T1024 291-299 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T1023 291-299 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T1018 231-236 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1017 45-50 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T1013 291-299 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T1011 286-290 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T1002 110-115 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T886 117-300 Sentence denotes Sera from RA patients induced signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells, which was mostly abolished by neutralizing anti-IL-6 antibody.
T6 117-300 Sentence denotes Sera from RA patients induced signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells, which was mostly abolished by neutralizing anti-IL-6 antibody.

simple1

Id Subject Object Predicate Lexical cue
T1135 38-41 Protein denotes CD4
T1136 110-115 Protein denotes IL-10
T1137 147-197 Protein denotes signal transducer and activator of transcription 3
T1138 224-227 Protein denotes CD4
T1139 286-290 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1936 286-290 Protein denotes IL-6
T1935 224-227 Protein denotes CD4
T1934 147-197 Protein denotes signal transducer and activator of transcription 3
T1933 110-115 Protein denotes IL-10
T1932 38-41 Protein denotes CD4
T1960 255-264 Negative_regulation denotes abolished
T1959 198-213 Phosphorylation denotes phosphorylation
T1958 139-146 Positive_regulation denotes induced
T1956 73-82 Positive_regulation denotes augmented
R633 T1934 T1960 themeOf signal transducer and activator of transcription 3,abolished
R634 T1934 T1958 themeOf signal transducer and activator of transcription 3,induced
R635 T1934 T1959 themeOf signal transducer and activator of transcription 3,phosphorylation
R642 T1959 T1958 themeOf phosphorylation,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1455 139-146 Positive_regulation denotes induced
T1454 198-213 Phosphorylation denotes phosphorylation
T1452 73-82 Positive_regulation denotes augmented
T1432 286-290 Protein denotes IL-6
T1431 224-227 Protein denotes CD4
T1430 147-197 Protein denotes signal transducer and activator of transcription 3
T1429 110-115 Protein denotes IL-10
T1428 38-41 Protein denotes CD4
R323 T1430 T1455 themeOf signal transducer and activator of transcription 3,induced
R324 T1430 T1454 themeOf signal transducer and activator of transcription 3,phosphorylation
R329 T1454 T1455 themeOf phosphorylation,induced

DLUT931

Id Subject Object Predicate Lexical cue
T1501 139-146 Positive_regulation denotes induced
T1500 198-213 Phosphorylation denotes phosphorylation
T1499 73-82 Positive_regulation denotes augmented
T1477 286-290 Protein denotes IL-6
T1476 224-227 Protein denotes CD4
T1475 147-197 Protein denotes signal transducer and activator of transcription 3
T1474 110-115 Protein denotes IL-10
T1473 38-41 Protein denotes CD4
R338 T1475 T1500 themeOf signal transducer and activator of transcription 3,phosphorylation
R349 T1500 T1501 themeOf phosphorylation,induced

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1912 268-299 Regulation denotes neutralizing anti-IL-6 antibody
T1892 127-129 Protein denotes RA
T1884 281-299 Protein denotes anti-IL-6 antibody
T1883 99-115 Protein denotes of 1 ng/ml IL-10
T1879 117-138 Protein denotes Sera from RA patients
T1877 217-236 Entity denotes normal CD4+ T cells
T1876 147-197 Protein denotes signal transducer and activator of transcription 3
T1861 54-56 Protein denotes RA
T1860 38-57 Entity denotes CD4+ T cells of RA,
T1914 147-236 Phosphorylation denotes signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells
R615 T1876 T1914 themeOf signal transducer and activator of transcription 3,signal transducer and activator of transcription 3 phosphorylation in normal CD4+ T cells
R618 T1884 T1912 themeOf anti-IL-6 antibody,neutralizing anti-IL-6 antibody

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1719 301-314 NN denotes Preincubation
T1718 299-300 . denotes .
T1717 291-299 NN denotes antibody
T1716 281-290 JJ denotes anti-IL-6
T1715 268-280 VBG denotes neutralizing
T1714 265-267 IN denotes by
T1713 255-264 VBN denotes abolished
T1712 248-254 RB denotes mostly
T1711 244-247 VBD denotes was
T1710 238-243 WDT denotes which
T1709 236-237 , denotes ,
T1708 231-236 NNS denotes cells
T1707 229-230 NNP denotes T
T1706 227-228 CD denotes +
T1705 224-227 NNP denotes CD4
T1704 217-223 JJ denotes normal
T1703 214-216 IN denotes in
T1702 198-213 NN denotes phosphorylation
T1701 196-197 CD denotes 3
T1700 182-195 NN denotes transcription
T1699 179-181 IN denotes of
T1698 169-178 NN denotes activator
T1697 165-168 CC denotes and
T1696 154-164 NN denotes transducer
T1695 147-153 NN denotes signal
T1694 139-146 VBD denotes induced
T1693 130-138 NNS denotes patients
T1692 127-129 NNP denotes RA
T1691 122-126 IN denotes from
T1690 117-121 NNP denotes Sera
T1689 115-116 . denotes .
T1688 110-115 NN denotes IL-10
T1687 104-109 NN denotes ng/ml
T1686 102-103 CD denotes 1
T1685 99-101 IN denotes of
T1684 90-98 NN denotes presence
T1683 86-89 DT denotes the
T1682 83-85 IN denotes by
T1681 73-82 VBN denotes augmented
T1680 69-72 RB denotes not
T1679 65-68 VBD denotes was
T1678 62-64 PRP denotes it
T1677 58-61 CC denotes but
T1676 56-57 , denotes ,
T1675 54-56 NNP denotes RA
T1674 51-53 IN denotes of
T1673 45-50 NNS denotes cells
T1672 43-44 NNP denotes T
T1671 41-42 NNP denotes +
T1670 38-41 NNP denotes CD4
T1669 31-37 NN denotes tissue
T1668 22-30 JJ denotes synovial
T1667 18-21 CC denotes and
T1666 12-17 NN denotes blood
T1665 7-11 DT denotes both
T1664 4-6 IN denotes in
R438 T1665 T1666 det both,blood
R439 T1666 T1673 nmod blood,cells
R440 T1667 T1666 cc and,blood
R441 T1668 T1669 amod synovial,tissue
R442 T1669 T1666 conj tissue,blood
R443 T1670 T1673 compound CD4,cells
R444 T1671 T1673 compound +,cells
R445 T1672 T1673 compound T,cells
R446 T1673 T1664 pobj cells,in
R447 T1674 T1673 prep of,cells
R448 T1675 T1674 pobj RA,of
R451 T1678 T1681 nsubjpass it,augmented
R452 T1679 T1681 auxpass was,augmented
R453 T1680 T1681 neg not,augmented
R455 T1682 T1681 agent by,augmented
R456 T1683 T1684 det the,presence
R457 T1684 T1682 pobj presence,by
R458 T1685 T1684 prep of,presence
R459 T1686 T1688 nummod 1,IL-10
R460 T1687 T1688 compound ng/ml,IL-10
R461 T1688 T1685 pobj IL-10,of
R462 T1689 T1681 punct .,augmented
R463 T1690 T1694 nsubj Sera,induced
R464 T1691 T1690 prep from,Sera
R465 T1692 T1693 compound RA,patients
R466 T1693 T1691 pobj patients,from
R467 T1694 T1694 ROOT induced,induced
R468 T1695 T1696 compound signal,transducer
R469 T1696 T1694 dobj transducer,induced
R470 T1697 T1696 cc and,transducer
R471 T1698 T1696 conj activator,transducer
R472 T1699 T1698 prep of,activator
R473 T1700 T1699 pobj transcription,of
R474 T1701 T1702 nummod 3,phosphorylation
R475 T1702 T1696 appos phosphorylation,transducer
R476 T1703 T1702 prep in,phosphorylation
R477 T1704 T1708 amod normal,cells
R478 T1705 T1708 compound CD4,cells
R479 T1706 T1708 nummod +,cells
R480 T1707 T1708 compound T,cells
R481 T1708 T1703 pobj cells,in
R482 T1709 T1708 punct ",",cells
R483 T1710 T1713 nsubjpass which,abolished
R484 T1711 T1713 auxpass was,abolished
R485 T1712 T1713 advmod mostly,abolished
R486 T1713 T1702 relcl abolished,phosphorylation
R487 T1714 T1713 prep by,abolished
R488 T1715 T1714 pcomp neutralizing,by
R489 T1716 T1717 amod anti-IL-6,antibody
R490 T1717 T1715 dobj antibody,neutralizing
R491 T1718 T1694 punct .,induced

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1108 224-227 Protein denotes CD4
T1109 281-299 Protein denotes anti-IL-6 antibody

testone

Id Subject Object Predicate Lexical cue
T70 255-264 Negative_regulation denotes abolished
T69 198-213 Phosphorylation denotes phosphorylation
T68 73-82 Positive_regulation denotes augmented
T49 286-290 Protein denotes IL-6
T48 224-227 Protein denotes CD4
T47 147-197 Protein denotes signal transducer and activator of transcription 3
T46 110-115 Protein denotes IL-10
T45 38-41 Protein denotes CD4
R6 T46 T68 causeOf IL-10,augmented
R7 T47 T69 themeOf signal transducer and activator of transcription 3,phosphorylation
R8 T49 T70 causeOf IL-6,abolished