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PMC:1064873 / 5354-5667 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T2226 280-284 Protein denotes CD86
T2225 271-275 Protein denotes CD80
T2224 257-261 Protein denotes CD28
T2223 225-247 Protein denotes MHC class II molecules
T2222 85-120 Protein denotes MHC class II antigens HLA-DRB1*0404

2_test

Id Subject Object Predicate Lexical cue
15535835-2446635-4156877 181-183 2446635 denotes 16
15535835-7738179-4156878 184-186 7738179 denotes 17
15535835-8624620-4156879 306-308 8624620 denotes 18
15535835-8546719-4156879 306-308 8546719 denotes 18
15535835-10529123-4156879 306-308 10529123 denotes 18

biosemtest

Id Subject Object Predicate Lexical cue
T3097 276-280 UMLS/C1366561 denotes and
T3085 262-266 UMLS/C0075747 denotes liga
T3071 285-289 UMLS/C0527903 denotes in
T3063 58-67 UMLS/C1317973 denotes rted by t
T3030 149-171 UMLS/C0012655 denotes se susceptibility and
T2977 285-289 UMLS/C1413243 denotes in
T2942 298-306 UMLS/C0333348 denotes med ST [
T2915 262-266 UMLS/C1332709 denotes liga
T2901 176-184 UMLS/C0439793 denotes ity [16,
T2781 130-143 UMLS/C0968669 denotes RB1*0401 with
T2705 58-67 UMLS/C0183683 denotes rted by t
T2669 112-120 UMLS/C0122040 denotes RB1*0404
T2656 216-226 UMLS/C0185117 denotes ssion of M
T3229 25-29 UMLS/C0323983 denotes auto
T3198 262-266 UMLS/C1426202 denotes liga
T3189 58-67 UMLS/C0344211 denotes rted by t
T3141 30-48 UMLS/C0443146 denotes mmune process has
T3133 49-52 UMLS/C2348947 denotes een
T2884 9-21 UMLS/C0237881 denotes ficance of t
T2853 267-274 UMLS/C1749457 denotes ds, CD8
T2850 276-280 UMLS/C0104998 denotes and
T2844 112-120 UMLS/C1415576 denotes RB1*0404
T2526 230-252 UMLS/C0019630 denotes lass II molecules and
T2525 90-111 UMLS/C0019630 denotes lass II antigens HLA-
T2519 216-226 UMLS/C0017262 denotes ssion of M
T2500 267-274 UMLS/C0023688 denotes ds, CD8
T2446 9-21 UMLS/C0750502 denotes ficance of t
T2430 58-67 UMLS/C1521721 denotes rted by t

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4583 311-312 -RRB- denotes ]
T4582 306-311 CD denotes 18-20
T4581 305-306 -LRB- denotes [
T4580 302-304 NN denotes ST
T4579 293-301 JJ denotes inflamed
T4578 289-292 DT denotes the
T4577 286-288 IN denotes in
T4576 284-285 -COMMA- denotes ,
T4575 280-284 NN denotes CD86
T4574 276-279 CC denotes and
T4573 271-275 NN denotes CD80
T4572 269-270 -COMMA- denotes ,
T4571 262-269 NN denotes ligands
T4570 257-261 NN denotes CD28
T4569 252-256 DT denotes both
T4568 248-251 CC denotes and
T4567 238-247 NN denotes molecules
T4566 235-237 CD denotes II
T4565 229-234 NN denotes class
T4564 225-228 NN denotes MHC
T4563 222-224 IN denotes of
T4562 211-221 NN denotes expression
T4561 200-210 JJ denotes high-level
T4560 196-199 DT denotes the
T4559 193-195 IN denotes by
T4558 189-192 CC denotes and
T4557 187-188 -COMMA- denotes ,
T4556 186-187 -RRB- denotes ]
T4555 181-186 CD denotes 16,17
T4554 180-181 -LRB- denotes [
T4553 171-179 NN denotes severity
T4552 167-170 CC denotes and
T4551 152-166 NN denotes susceptibility
T4550 144-151 NN denotes disease
T4549 139-143 IN denotes with
T4548 125-138 NN denotes HLA-DRB1*0401
T4547 121-124 CC denotes and
T4546 107-120 NN denotes HLA-DRB1*0404
T4545 98-106 NN denotes antigens
T4544 95-97 CD denotes II
T4543 89-94 NN denotes class
T4542 85-88 NN denotes MHC
T4541 81-84 DT denotes the
T4540 78-80 IN denotes of
T4539 70-77 NN denotes linkage
T4538 66-69 DT denotes the
T4537 63-65 IN denotes by
T4536 53-62 VB denotes supported
T4535 48-52 VB denotes been
T4534 44-47 VB denotes has
T4533 36-43 NN denotes process
T4532 25-35 JJ denotes autoimmune
T4531 20-24 DT denotes this
T4530 17-19 IN denotes of
T4529 4-16 NN denotes significance
T4528 0-3 DT denotes The
R1565 T4529 T4528 arg1Of significance,The
R1566 T4529 T4530 arg1Of significance,of
R1567 T4529 T4534 arg1Of significance,has
R1568 T4529 T4535 arg1Of significance,been
R1569 T4529 T4536 arg2Of significance,supported
R1570 T4533 T4530 arg2Of process,of
R1571 T4533 T4531 arg1Of process,this
R1572 T4533 T4532 arg1Of process,autoimmune
R1576 T4536 T4534 arg2Of supported,has
R1578 T4536 T4535 arg2Of supported,been
R1579 T4536 T4576 arg1Of supported,","
R1580 T4536 T4577 arg1Of supported,in
R1583 T4539 T4538 arg1Of linkage,the
R1584 T4539 T4540 arg1Of linkage,of
R1585 T4539 T4549 arg1Of linkage,with
R1586 T4539 T4559 arg1Of linkage,by
R1587 T4539 T4568 arg1Of linkage,and
R1591 T4545 T4542 arg1Of antigens,MHC
R1592 T4545 T4543 arg1Of antigens,class
R1593 T4545 T4544 arg1Of antigens,II
R1594 T4546 T4547 arg1Of HLA-DRB1*0404,and
R1595 T4547 T4540 arg2Of and,of
R1596 T4547 T4541 arg1Of and,the
R1597 T4547 T4545 arg1Of and,antigens
R1598 T4548 T4547 arg2Of HLA-DRB1*0401,and
R1600 T4549 T4558 arg1Of with,and
R1602 T4551 T4550 arg1Of susceptibility,disease
R1603 T4551 T4552 arg1Of susceptibility,and
R1604 T4552 T4549 arg2Of and,with
R1605 T4553 T4552 arg2Of severity,and
R1606 T4553 T4554 arg1Of severity,[
R1607 T4555 T4554 arg2Of "16,17",[
R1609 T4556 T4554 arg3Of ],[
R1612 T4558 T4557 arg1Of and,","
R1613 T4559 T4558 arg2Of by,and
R1614 T4562 T4559 arg2Of expression,by
R1615 T4562 T4560 arg1Of expression,the
R1616 T4562 T4561 arg1Of expression,high-level
R1617 T4562 T4563 arg1Of expression,of
R1620 T4567 T4563 arg2Of molecules,of
R1621 T4567 T4564 arg1Of molecules,MHC
R1622 T4567 T4565 arg1Of molecules,class
R1623 T4567 T4566 arg1Of molecules,II
R1624 T4568 T4536 arg1Of and,supported
R1625 T4568 T4537 arg2Of and,by
R1628 T4571 T4568 arg2Of ligands,and
R1629 T4571 T4569 arg1Of ligands,both
R1630 T4571 T4570 arg1Of ligands,CD28
R1631 T4571 T4572 arg1Of ligands,","
R1632 T4573 T4574 arg1Of CD80,and
R1634 T4574 T4572 arg2Of and,","
R1636 T4575 T4574 arg2Of CD86,and
R1639 T4580 T4577 arg2Of ST,in
R1640 T4580 T4578 arg1Of ST,the
R1641 T4580 T4579 arg1Of ST,inflamed
R1642 T4580 T4581 arg1Of ST,[
R1643 T4582 T4581 arg2Of 18-20,[
R1644 T4583 T4581 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3513 280-284 Protein denotes CD86
T3512 271-275 Protein denotes CD80
T3511 257-261 Protein denotes CD28
T3510 125-138 Protein denotes HLA-DRB1*0401
T3509 107-120 Protein denotes HLA-DRB1*0404

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3855 280-284 http://www.uniprot.org/uniprot/P42081 denotes CD86
T3853 271-275 http://www.uniprot.org/uniprot/P33681 denotes CD80
T3849 257-261 http://www.uniprot.org/uniprot/P10747 denotes CD28

sentences

Id Subject Object Predicate Lexical cue
T3253 0-313 Sentence denotes The significance of this autoimmune process has been supported by the linkage of the MHC class II antigens HLA-DRB1*0404 and HLA-DRB1*0401 with disease susceptibility and severity [16,17], and by the high-level expression of MHC class II molecules and both CD28 ligands, CD80 and CD86, in the inflamed ST [18-20].
T30 0-313 Sentence denotes The significance of this autoimmune process has been supported by the linkage of the MHC class II antigens HLA-DRB1*0404 and HLA-DRB1*0401 with disease susceptibility and severity [16,17], and by the high-level expression of MHC class II molecules and both CD28 ligands, CD80 and CD86, in the inflamed ST [18-20].

simple1

Id Subject Object Predicate Lexical cue
T3916 280-284 Protein denotes CD86
T3915 271-275 Protein denotes CD80
T3914 257-261 Protein denotes CD28
T3913 125-138 Protein denotes HLA-DRB1*0401
T3912 107-120 Protein denotes HLA-DRB1*0404

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6426 280-284 Protein denotes CD86
T6425 271-275 Protein denotes CD80
T6424 257-261 Protein denotes CD28
T6423 125-138 Protein denotes HLA-DRB1*0401
T6422 107-120 Protein denotes HLA-DRB1*0404

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4864 280-284 Protein denotes CD86
T4863 271-275 Protein denotes CD80
T4862 257-261 Protein denotes CD28
T4861 125-138 Protein denotes HLA-DRB1*0401
T4860 107-120 Protein denotes HLA-DRB1*0404

DLUT931

Id Subject Object Predicate Lexical cue
T5924 211-221 Gene_expression denotes expression
T5876 280-284 Protein denotes CD86
T5875 271-275 Protein denotes CD80
T5874 257-261 Protein denotes CD28
T5873 125-138 Protein denotes HLA-DRB1*0401
T5872 107-120 Protein denotes HLA-DRB1*0404
R2918 T5872 T5924 themeOf HLA-DRB1*0404,expression
R2926 T5873 T5924 themeOf HLA-DRB1*0401,expression
R2928 T5874 T5924 themeOf CD28,expression
R2929 T5875 T5924 themeOf CD80,expression
R2934 T5876 T5924 themeOf CD86,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6245 289-312 Protein denotes the inflamed ST [18-20]
T6187 81-120 Protein denotes the MHC class II antigens HLA-DRB1*0404
T6170 257-261 Protein denotes CD28
T6236 225-247 Entity denotes MHC class II molecules
T6214 252-269 Entity denotes both CD28 ligands
T6205 98-106 Entity denotes antigens
T6254 280-284 Protein denotes CD86
T6251 81-120 Protein denotes the MHC class II antigens HLA-DRB1*0404
T6320 225-237 Protein denotes MHC class II
T6314 271-275 Protein denotes CD80
T6301 125-151 Protein denotes HLA-DRB1*0401 with disease

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5584 312-313 . denotes .
T5583 311-312 NNP denotes ]
T5582 306-311 CD denotes 18-20
T5581 305-306 NNP denotes [
T5580 302-304 NNP denotes ST
T5579 293-301 JJ denotes inflamed
T5578 289-292 DT denotes the
T5577 286-288 IN denotes in
T5576 284-285 , denotes ,
T5575 280-284 NNP denotes CD86
T5574 276-279 CC denotes and
T5573 271-275 NNP denotes CD80
T5572 269-270 , denotes ,
T5571 262-269 NNS denotes ligands
T5570 257-261 CD denotes CD28
T5569 252-256 DT denotes both
T5568 248-251 CC denotes and
T5567 238-247 NNS denotes molecules
T5566 235-237 NNP denotes II
T5565 229-234 NN denotes class
T5564 225-228 NNP denotes MHC
T5563 222-224 IN denotes of
T5562 211-221 NN denotes expression
T5561 200-210 JJ denotes high-level
T5560 196-199 DT denotes the
T5559 193-195 IN denotes by
T5558 189-192 CC denotes and
T5557 187-188 , denotes ,
T5556 186-187 NNP denotes ]
T5555 181-186 CD denotes 16,17
T5554 180-181 NNP denotes [
T5553 171-179 NN denotes severity
T5552 167-170 CC denotes and
T5551 152-166 NN denotes susceptibility
T5550 144-151 NN denotes disease
T5549 139-143 IN denotes with
T5548 134-138 CD denotes 0401
T5547 133-134 SYM denotes *
T5546 125-133 NNP denotes HLA-DRB1
T5545 121-124 CC denotes and
T5544 116-120 CD denotes 0404
T5543 115-116 SYM denotes *
T5542 107-115 NNP denotes HLA-DRB1
T5541 98-106 VBZ denotes antigens
T5540 95-97 NNP denotes II
T5539 89-94 NN denotes class
T5538 85-88 NNP denotes MHC
T5537 81-84 DT denotes the
T5536 78-80 IN denotes of
T5535 70-77 NN denotes linkage
T5534 66-69 DT denotes the
T5533 63-65 IN denotes by
T5532 53-62 VBN denotes supported
T5531 48-52 VBN denotes been
T5530 44-47 VBZ denotes has
T5529 36-43 NN denotes process
T5528 25-35 JJ denotes autoimmune
T5527 20-24 DT denotes this
T5526 17-19 IN denotes of
T5525 4-16 NN denotes significance
T5524 0-3 DT denotes The
R2587 T5524 T5525 det The,significance
R2589 T5525 T5532 nsubjpass significance,supported
R2590 T5526 T5525 prep of,significance
R2591 T5537 T5541 det the,antigens
R2592 T5538 T5540 compound MHC,II
R2593 T5527 T5529 det this,process
R2594 T5539 T5540 compound class,II
R2595 T5540 T5541 compound II,antigens
R2596 T5528 T5529 amod autoimmune,process
R2597 T5541 T5536 pobj antigens,of
R2598 T5542 T5541 appos HLA-DRB1,antigens
R2599 T5529 T5526 pobj process,of
R2600 T5543 T5532 punct *,supported
R2601 T5544 T5544 ROOT 0404,0404
R2602 T5545 T5544 cc and,0404
R2603 T5530 T5532 aux has,supported
R2604 T5546 T5544 conj HLA-DRB1,0404
R2605 T5547 T5546 punct *,HLA-DRB1
R2606 T5548 T5546 amod 0401,HLA-DRB1
R2607 T5531 T5532 auxpass been,supported
R2608 T5549 T5546 prep with,HLA-DRB1
R2609 T5550 T5551 compound disease,susceptibility
R2610 T5551 T5549 pobj susceptibility,with
R2611 T5532 T5532 ROOT supported,supported
R2612 T5552 T5551 cc and,susceptibility
R2613 T5553 T5551 conj severity,susceptibility
R2614 T5554 T5556 compound [,]
R2615 T5555 T5556 compound "16,17",]
R2616 T5533 T5532 agent by,supported
R2617 T5556 T5546 conj ],HLA-DRB1
R2618 T5557 T5556 punct ",",]
R2619 T5558 T5544 cc and,0404
R2620 T5534 T5535 det the,linkage
R2621 T5559 T5544 conj by,0404
R2622 T5560 T5562 det the,expression
R2623 T5561 T5562 amod high-level,expression
R2624 T5535 T5533 pobj linkage,by
R2625 T5562 T5559 pobj expression,by
R2626 T5563 T5562 prep of,expression
R2627 T5564 T5567 compound MHC,molecules
R2628 T5536 T5535 prep of,linkage
R2629 T5565 T5567 compound class,molecules
R2630 T5566 T5567 compound II,molecules
R2631 T5567 T5563 pobj molecules,of
R2632 T5568 T5544 cc and,0404
R2633 T5569 T5571 det both,ligands
R2635 T5570 T5571 nummod CD28,ligands
R2637 T5571 T5544 conj ligands,0404
R2638 T5572 T5571 punct ",",ligands
R2639 T5573 T5571 conj CD80,ligands
R2640 T5574 T5573 cc and,CD80
R2642 T5575 T5573 conj CD86,CD80
R2643 T5576 T5571 punct ",",ligands
R2644 T5577 T5544 prep in,0404
R2646 T5578 T5583 det the,]
R2647 T5579 T5583 amod inflamed,]
R2649 T5580 T5581 compound ST,[
R2650 T5581 T5583 nmod [,]
R2652 T5582 T5583 nummod 18-20,]
R2653 T5583 T5577 pobj ],in
R2654 T5584 T5544 punct .,0404

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3788 211-221 Gene_expression denotes expression
T3787 211-221 Gene_expression denotes expression
T3786 211-221 Gene_expression denotes expression
T3785 211-221 Gene_expression denotes expression
T3784 70-77 Binding denotes linkage
T3783 70-77 Binding denotes linkage
T3782 70-77 Binding denotes linkage
T3781 280-284 Protein denotes CD86
T3780 271-275 Protein denotes CD80
T3779 257-269 Protein denotes CD28 ligands
T3778 225-247 Protein denotes MHC class II molecules
T3777 129-133 Protein denotes DRB1
T3776 125-128 Protein denotes HLA
T3775 111-115 Protein denotes DRB1
T3774 107-110 Protein denotes HLA
T3773 85-106 Protein denotes MHC class II antigens
R986 T3773 T3782 themeOf MHC class II antigens,linkage
R987 T3773 T3783 themeOf MHC class II antigens,linkage
R988 T3777 T3784 themeOf DRB1,linkage
R989 T3778 T3785 themeOf MHC class II molecules,expression
R990 T3779 T3782 themeOf CD28 ligands,linkage
R991 T3779 T3784 themeOf CD28 ligands,linkage
R992 T3779 T3786 themeOf CD28 ligands,expression
R993 T3780 T3787 themeOf CD80,expression
R994 T3781 T3783 themeOf CD86,linkage
R995 T3781 T3788 themeOf CD86,expression

test3

Id Subject Object Predicate Lexical cue
T2396 280-284 Protein denotes CD86
T2395 271-275 Protein denotes CD80
T2394 257-261 Protein denotes CD28
T2393 211-221 Gene_expression denotes expression
T2392 125-138 Protein denotes HLA-DRB1*0401
T2391 107-120 Protein denotes HLA-DRB1*0404
T2308 280-284 Protein denotes CD86
T2307 271-275 Protein denotes CD80
T2306 257-261 Protein denotes CD28
T2305 125-138 Protein denotes HLA-DRB1*0401
T2304 107-120 Protein denotes HLA-DRB1*0404
R812 T2394 T2393 themeOf CD28,expression
R813 T2395 T2393 themeOf CD80,expression
R814 T2396 T2393 themeOf CD86,expression

testone

Id Subject Object Predicate Lexical cue
T2122 280-284 Protein denotes CD86
T2121 271-275 Protein denotes CD80
T2120 257-261 Protein denotes CD28
T2119 125-138 Protein denotes HLA-DRB1*0401
T2118 107-120 Protein denotes HLA-DRB1*0404
T2167 211-221 Gene_expression denotes expression
R747 T2121 T2167 themeOf CD80,expression
R748 T2122 T2167 themeOf CD86,expression