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PMC:1064873 / 4008-4298 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T2212 127-131 Protein denotes IL-6
T2211 61-77 Protein denotes matrix proteases
T2210 45-59 Protein denotes growth factors

2_test

Id Subject Object Predicate Lexical cue
15535835-8717520-4156871 122-124 8717520 denotes 10

biosemtest

Id Subject Object Predicate Lexical cue
T3103 69-78 UP/P10270 denotes roteases,
T3095 46-60 UP/Q776B5 denotes rowth factors,
T3089 46-60 UP/P08441 denotes rowth factors,
T3078 69-78 UP/P07570 denotes roteases,
T3049 46-60 UP/P01136 denotes rowth factors,
T3042 69-78 UP/P63122 denotes roteases,
T3038 69-78 UP/P63124 denotes roteases,
T3018 62-68 UMLS/C1704639 denotes atrix
T3017 62-68 UMLS/C1704640 denotes atrix
T3003 232-239 UMLS/C0441472 denotes ctions
T2997 4-9 UMLS/C1955473 denotes ther
T2994 69-78 UMLS/C1947941 denotes roteases,
T2983 69-78 UP/P63121 denotes roteases,
T2958 46-60 UMLS/C0018284 denotes rowth factors,
T2947 46-60 UP/P33804 denotes rowth factors,
T2941 10-22 UMLS/C0333348 denotes nflammatory
T2899 69-78 UP/Q9BXR3 denotes roteases,
T2833 263-283 UMLS/C0001349 denotes cute-phase response,
T2829 98-121 UMLS/C0162772 denotes eactive oxygen species
T2813 195-206 UMLS/C1546634 denotes ibroblasts,
T2809 69-78 UP/P04024 denotes roteases,
T2808 69-78 UP/P63129 denotes roteases,
T2792 80-92 UMLS/C0028128 denotes itric oxide,
T2780 240-247 UMLS/C1552866 denotes nclude
T2778 46-60 UP/Q86607 denotes rowth factors,
T2765 195-206 UMLS/C1550637 denotes ibroblasts,
T2762 46-60 UP/Q8V307 denotes rowth factors,
T2752 248-258 UMLS/C0284447 denotes imulating
T2741 69-78 UP/P63127 denotes roteases,
T2704 69-78 UP/P63125 denotes roteases,
T2681 69-78 UP/P21407 denotes roteases,
T2672 69-78 UP/P63131 denotes roteases,
T2667 128-132 UMLS/C1149241 denotes L-6
T3216 69-78 UMLS/C0030940 denotes roteases,
T3212 69-78 UMLS/C0030946 denotes roteases,
T3184 34-44 UMLS/C0282554 denotes hemokines,
T3168 62-68 UMLS/C1706515 denotes atrix
T3139 34-44 UMLS/C1527036 denotes hemokines,
T2653 69-78 UP/P63120 denotes roteases,
T2646 69-78 UP/P51518 denotes roteases,
T2640 185-194 UMLS/C1879547 denotes ctivated
T2636 69-78 UP/P10265 denotes roteases,
T2626 128-132 UMLS/C1527132 denotes L-6
T2889 240-247 UMLS/C0332257 denotes nclude
T2872 240-247 UMLS/C2700399 denotes nclude
T2855 69-78 UP/P10271 denotes roteases,
T2854 69-78 UP/P63119 denotes roteases,
T2848 195-206 UMLS/C0016030 denotes ibroblasts,
T2567 150-158 UMLS/C1524094 denotes ytokine
T2566 23-32 UMLS/C1524094 denotes ytokines,
T2556 128-132 UMLS/C0021760 denotes L-6
T2549 69-78 UP/P63123 denotes roteases,
T2543 128-132 UMLS/C1334122 denotes L-6
T2515 4-9 UMLS/C1556044 denotes ther
T2509 46-60 UP/Q6RZT5 denotes rowth factors,
T2505 46-60 UP/P20494 denotes rowth factors,
T2495 232-239 UMLS/C1552007 denotes ctions
T2481 46-60 UP/O57166 denotes rowth factors,
T2461 46-60 UP/P08072 denotes rowth factors,
T2439 150-158 UMLS/C0079189 denotes ytokine
T2438 23-32 UMLS/C0079189 denotes ytokines,
T2431 46-60 UP/Q9JFH4 denotes rowth factors,

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4357 284-290 NN denotes B-cell
T4356 282-283 -COMMA- denotes ,
T4355 274-282 NN denotes response
T4354 262-273 NN denotes acute-phase
T4353 258-261 DT denotes the
T4352 247-257 VB denotes simulating
T4351 239-246 VB denotes include
T4350 231-238 NN denotes actions
T4349 215-230 JJ denotes proinflammatory
T4348 211-214 PRP-DOLLAR- denotes its
T4347 207-210 CC denotes and
T4346 205-206 -COMMA- denotes ,
T4345 194-205 NN denotes fibroblasts
T4344 184-193 VB denotes activated
T4343 181-183 IN denotes by
T4342 167-180 RB denotes substantially
T4341 158-166 VB denotes produced
T4340 149-157 NN denotes cytokine
T4339 137-148 JJ denotes pleiotropic
T4338 135-136 DT denotes a
T4337 132-134 VB denotes is
T4336 127-131 NN denotes IL-6
T4335 124-125 -RRB- denotes ]
T4334 122-124 CD denotes 10
T4333 121-122 -LRB- denotes [
T4332 113-120 NN denotes species
T4331 106-112 NN denotes oxygen
T4330 97-105 JJ denotes reactive
T4329 93-96 CC denotes and
T4328 91-92 -COMMA- denotes ,
T4327 86-91 NN denotes oxide
T4326 79-85 JJ denotes nitric
T4325 77-78 -COMMA- denotes ,
T4324 68-77 NN denotes proteases
T4323 61-67 NN denotes matrix
T4322 59-60 -COMMA- denotes ,
T4321 52-59 NN denotes factors
T4320 45-51 NN denotes growth
T4319 43-44 -COMMA- denotes ,
T4318 33-43 NN denotes chemokines
T4317 31-32 -COMMA- denotes ,
T4316 22-31 NN denotes cytokines
T4315 9-21 JJ denotes inflammatory
T4314 3-8 JJ denotes other
R1409 T4316 T4314 arg1Of cytokines,other
R1410 T4316 T4315 arg1Of cytokines,inflammatory
R1411 T4316 T4317 arg1Of cytokines,","
R1412 T4317 T4319 arg1Of ",",","
R1414 T4318 T4317 arg2Of chemokines,","
R1416 T4319 T4322 arg1Of ",",","
R1418 T4340 T4337 arg2Of cytokine,is
R1419 T4321 T4319 arg2Of factors,","
R1420 T4321 T4320 arg1Of factors,growth
R1421 T4322 T4325 arg1Of ",",","
R1422 T4324 T4322 arg2Of proteases,","
R1423 T4324 T4323 arg1Of proteases,matrix
R1425 T4327 T4325 arg2Of oxide,","
R1426 T4327 T4326 arg1Of oxide,nitric
R1428 T4329 T4328 arg1Of and,","
R1429 T4340 T4338 arg1Of cytokine,a
R1430 T4340 T4339 arg1Of cytokine,pleiotropic
R1431 T4340 T4341 arg2Of cytokine,produced
R1432 T4332 T4329 arg2Of species,and
R1433 T4332 T4330 arg1Of species,reactive
R1434 T4332 T4331 arg1Of species,oxygen
R1435 T4332 T4333 arg1Of species,[
R1436 T4334 T4333 arg2Of 10,[
R1437 T4335 T4333 arg3Of ],[
R1438 T4341 T4342 arg1Of produced,substantially
R1439 T4336 T4337 arg1Of IL-6,is
R1440 T4345 T4341 arg1Of fibroblasts,produced
R1441 T4337 T4347 arg1Of is,and
R1442 T4345 T4343 arg2Of fibroblasts,by
R1443 T4345 T4344 arg2Of fibroblasts,activated
R1444 T4347 T4346 arg1Of and,","
R1446 T4350 T4348 arg1Of actions,its
R1456 T4350 T4349 arg1Of actions,proinflammatory
R1457 T4350 T4351 arg1Of actions,include
R1458 T4351 T4347 arg2Of include,and
R1467 T4352 T4351 arg2Of simulating,include
R1478 T4355 T4352 arg2Of response,simulating
R1484 T4355 T4353 arg1Of response,the
R1488 T4355 T4354 arg1Of response,acute-phase
R1490 T4355 T4356 arg1Of response,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3497 137-157 Protein denotes pleiotropic cytokine
T3496 127-131 Protein denotes IL-6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3703 127-131 http://www.uniprot.org/uniprot/P05231 denotes IL-6

GO-BP

Id Subject Object Predicate Lexical cue
T3296 184-205 http://purl.obolibrary.org/obo/GO_0072537 denotes activated fibroblasts
T3295 45-51 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-CC

Id Subject Object Predicate Lexical cue
T3581 286-290 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

GO-MF

Id Subject Object Predicate Lexical cue
T3575 127-131 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

simple1

Id Subject Object Predicate Lexical cue
T3900 137-157 Protein denotes pleiotropic cytokine
T3899 127-131 Protein denotes IL-6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6465 158-166 Gene_expression denotes produced
T6410 137-157 Protein denotes pleiotropic cytokine
T6409 127-131 Protein denotes IL-6
R3149 T6409 T6465 themeOf IL-6,produced
R3153 T6410 T6465 themeOf pleiotropic cytokine,produced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4905 158-166 Gene_expression denotes produced
T4848 137-157 Protein denotes pleiotropic cytokine
T4847 127-131 Protein denotes IL-6
R1914 T4847 T4905 themeOf IL-6,produced
R1917 T4848 T4905 themeOf pleiotropic cytokine,produced

DLUT931

Id Subject Object Predicate Lexical cue
T5918 184-193 Positive_regulation denotes activated
T5917 158-166 Gene_expression denotes produced
T5860 137-157 Protein denotes pleiotropic cytokine
T5859 127-131 Protein denotes IL-6
R2930 T5859 T5917 themeOf IL-6,produced
R2931 T5860 T5917 themeOf pleiotropic cytokine,produced
R2961 T5917 T5918 themeOf produced,activated
R2962 T5917 T5918 themeOf produced,activated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6196 135-205 Protein denotes a pleiotropic cytokine produced substantially by activated fibroblasts
T6174 79-91 Entity denotes nitric oxide
T6165 33-43 Protein denotes chemokines
T6238 61-77 Protein denotes matrix proteases
T6222 127-131 Protein denotes IL-6
T6269 3-31 Protein denotes other inflammatory cytokines
T6264 184-205 Entity denotes activated fibroblasts

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5310 68-77 NNS denotes proteases
T5309 61-67 NN denotes matrix
T5308 59-60 , denotes ,
T5307 52-59 NNS denotes factors
T5306 45-51 NN denotes growth
T5305 43-44 , denotes ,
T5304 33-43 NNS denotes chemokines
T5303 31-32 , denotes ,
T5302 22-31 NNS denotes cytokines
T5301 9-21 JJ denotes inflammatory
T5300 3-8 JJ denotes other
T5344 284-290 NNP denotes B-cell
T5343 282-283 , denotes ,
T5342 274-282 NN denotes response
T5341 262-273 JJ denotes acute-phase
T5340 258-261 DT denotes the
T5339 247-257 VBG denotes simulating
T5338 239-246 VBP denotes include
T5337 231-238 NNS denotes actions
T5336 215-230 JJ denotes proinflammatory
T5335 211-214 PRP$ denotes its
T5334 207-210 CC denotes and
T5333 205-206 , denotes ,
T5332 194-205 NNS denotes fibroblasts
T5331 184-193 VBN denotes activated
T5330 181-183 IN denotes by
T5329 167-180 RB denotes substantially
T5328 158-166 VBD denotes produced
T5327 149-157 NN denotes cytokine
T5326 137-148 JJ denotes pleiotropic
T5325 135-136 DT denotes a
T5324 132-134 VBZ denotes is
T5323 127-131 NN denotes IL-6
T5322 125-126 . denotes .
T5321 124-125 NNP denotes ]
T5320 122-124 CD denotes 10
T5319 121-122 NNP denotes [
T5318 113-120 NNS denotes species
T5317 106-112 NN denotes oxygen
T5316 97-105 JJ denotes reactive
T5315 93-96 CC denotes and
T5314 91-92 , denotes ,
T5313 86-91 NN denotes oxide
T5312 79-85 JJ denotes nitric
T5311 77-78 , denotes ,
R2304 T5300 T5302 amod other,cytokines
R2305 T5301 T5302 amod inflammatory,cytokines
R2308 T5303 T5302 punct ",",cytokines
R2309 T5304 T5302 conj chemokines,cytokines
R2310 T5305 T5304 punct ",",chemokines
R2312 T5306 T5307 compound growth,factors
R2313 T5307 T5304 conj factors,chemokines
R2363 T5342 T5339 dobj response,simulating
R2364 T5343 T5339 punct ",",simulating
R2316 T5308 T5307 punct ",",factors
R2317 T5309 T5310 compound matrix,proteases
R2319 T5310 T5307 conj proteases,factors
R2322 T5311 T5310 punct ",",proteases
R2323 T5312 T5313 amod nitric,oxide
R2324 T5313 T5310 conj oxide,proteases
R2326 T5314 T5313 punct ",",oxide
R2327 T5315 T5313 cc and,oxide
R2328 T5316 T5318 amod reactive,species
R2329 T5317 T5318 compound oxygen,species
R2331 T5318 T5313 conj species,oxide
R2332 T5319 T5321 nmod [,]
R2333 T5320 T5321 nummod 10,]
R2337 T5323 T5324 nsubj IL-6,is
R2339 T5324 T5324 ROOT is,is
R2340 T5325 T5327 det a,cytokine
R2341 T5326 T5327 amod pleiotropic,cytokine
R2343 T5327 T5324 attr cytokine,is
R2344 T5328 T5327 acl produced,cytokine
R2346 T5329 T5328 advmod substantially,produced
R2347 T5330 T5328 agent by,produced
R2348 T5331 T5332 amod activated,fibroblasts
R2350 T5332 T5330 pobj fibroblasts,by
R2351 T5333 T5328 punct ",",produced
R2352 T5334 T5327 cc and,cytokine
R2353 T5335 T5337 poss its,actions
R2355 T5336 T5337 amod proinflammatory,actions
R2356 T5337 T5338 nsubj actions,include
R2358 T5338 T5324 conj include,is
R2359 T5339 T5338 xcomp simulating,include
R2360 T5340 T5342 det the,response
R2362 T5341 T5342 amod acute-phase,response

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3757 158-166 Gene_expression denotes produced
T3756 127-131 Protein denotes IL-6
R980 T3756 T3757 themeOf IL-6,produced

test3

Id Subject Object Predicate Lexical cue
T2374 137-157 Protein denotes pleiotropic cytokine
T2373 127-131 Protein denotes IL-6
T2292 137-157 Protein denotes pleiotropic cytokine
T2291 127-131 Protein denotes IL-6

testone

Id Subject Object Predicate Lexical cue
T2089 137-157 Protein denotes pleiotropic cytokine
T2088 127-131 Protein denotes IL-6