PMC:1064873 / 365-504
Annnotations
LappsTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T419 | 43-50 | OCCURRENCE | denotes | produce |
| T392 | 120-122 | country_code | denotes | in |
| T391 | 40-42 | country_code | denotes | to |
| T162 | 136-138 | IN | denotes | of |
| T161 | 127-135 | NN | denotes | presence |
| T160 | 123-126 | DT | denotes | the |
| T159 | 120-122 | IN | denotes | in |
| T158 | 106-119 | NN | denotes | costimulation |
| T157 | 103-105 | CD | denotes | 28 |
| T156 | 101-103 | NNP | denotes | CD |
| T155 | 97-100 | CC | denotes | and |
| T154 | 95-96 | CD | denotes | 3 |
| T153 | 93-95 | NNP | denotes | CD |
| T152 | 87-92 | IN | denotes | after |
| T151 | 81-86 | NN | denotes | gamma |
| T150 | 70-80 | NN | denotes | interferon |
| T149 | 67-69 | IN | denotes | of |
| T148 | 59-66 | NNS | denotes | amounts |
| T147 | 51-58 | JJR | denotes | greater |
| T146 | 43-50 | VB | denotes | produce |
| T145 | 40-42 | TO | denotes | to |
| T144 | 35-39 | JJ | denotes | able |
| T143 | 30-34 | VBD | denotes | were |
| T142 | 28-29 | ) | denotes | ) |
| T141 | 26-28 | NNP | denotes | RA |
| T140 | 25-26 | ( | denotes | ( |
| T139 | 15-24 | NN | denotes | arthritis |
| T138 | 4-14 | NN | denotes | rheumatoid |
biosemtest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T880 | 101-105 | UMLS/C1332709 | denotes | CD28 |
| T873 | 70-86 | UP/P01581 | denotes | interferon gamma |
| T861 | 59-66 | UMLS/C1265611 | denotes | amounts |
| T859 | 70-86 | UP/Q62574 | denotes | interferon gamma |
| T857 | 87-92 | UMLS/C0231290 | denotes | after |
| T854 | 70-86 | UP/Q7TSP4 | denotes | interferon gamma |
| T851 | 70-86 | UP/Q8SPW9 | denotes | interferon gamma |
| T845 | 101-105 | UMLS/C1426202 | denotes | CD28 |
| T842 | 70-86 | UP/P63311 | denotes | interferon gamma |
| T833 | 70-86 | UP/P63309 | denotes | interferon gamma |
| T824 | 70-86 | UP/P46402 | denotes | interferon gamma |
| T810 | 70-86 | UP/P07353 | denotes | interferon gamma |
| T806 | 70-86 | UP/Q647G2 | denotes | interferon gamma |
| T803 | 70-86 | UP/Q865Y4 | denotes | interferon gamma |
| T794 | 70-86 | UP/Q5CCK0 | denotes | interferon gamma |
| T791 | 70-86 | UP/P28341 | denotes | interferon gamma |
| T788 | 51-58 | UMLS/C1704243 | denotes | greater |
| T786 | 70-86 | UP/Q9TV67 | denotes | interferon gamma |
| T783 | 70-86 | UP/O77763 | denotes | interferon gamma |
| T722 | 51-58 | UMLS/C0205393 | denotes | greater |
| T718 | 70-86 | UP/A4PIZ9 | denotes | interferon gamma |
| T714 | 70-86 | UP/Q25BC0 | denotes | interferon gamma |
| T711 | 70-86 | UP/P01580 | denotes | interferon gamma |
| T696 | 70-86 | UP/Q1WM28 | denotes | interferon gamma |
| T689 | 101-105 | UMLS/C0075747 | denotes | CD28 |
| T675 | 70-86 | UP/O73915 | denotes | interferon gamma |
| T672 | 70-86 | UP/Q9YGB9 | denotes | interferon gamma |
| T668 | 70-86 | UP/P79154 | denotes | interferon gamma |
| T663 | 70-86 | UP/P01579 | denotes | interferon gamma |
| T652 | 70-86 | UP/P42162 | denotes | interferon gamma |
| T645 | 70-86 | UP/P17773 | denotes | interferon gamma |
| T641 | 70-86 | UP/P42160 | denotes | interferon gamma |
| T635 | 70-86 | UP/O57608 | denotes | interferon gamma |
| T632 | 35-39 | UMLS/C0085732 | denotes | able |
| T631 | 4-24 | UMLS/C0003873 | denotes | rheumatoid arthritis |
| T628 | 70-86 | UP/O57603 | denotes | interferon gamma |
| T623 | 70-86 | UP/Q2PE75 | denotes | interferon gamma |
| T620 | 70-86 | UP/Q8MKF5 | denotes | interferon gamma |
| T618 | 87-92 | UMLS/C0687676 | denotes | after |
| T602 | 70-86 | UP/P28333 | denotes | interferon gamma |
| T599 | 70-86 | UP/Q866Y6 | denotes | interferon gamma |
| T592 | 70-86 | UP/Q5I6S9 | denotes | interferon gamma |
| T587 | 70-86 | UP/Q865W6 | denotes | interferon gamma |
| T580 | 127-135 | UMLS/C0392148 | denotes | presence |
| T578 | 70-86 | UP/P17803 | denotes | interferon gamma |
| T574 | 70-86 | UMLS/C0021740 | denotes | interferon gamma |
| T572 | 35-39 | UMLS/C1299581 | denotes | able |
| T570 | 70-86 | UMLS/C0021745 | denotes | interferon gamma |
| T567 | 70-86 | UP/Q9TTB0 | denotes | interferon gamma |
| T546 | 93-96 | UMLS/C0108779 | denotes | CD3 |
| T516 | 59-66 | UMLS/C1561574 | denotes | amounts |
| T508 | 70-86 | UP/Q865X1 | denotes | interferon gamma |
| T468 | 70-86 | UP/P42161 | denotes | interferon gamma |
| T439 | 51-58 | UMLS/C0549177 | denotes | greater |
| T779 | 70-86 | UP/O57571 | denotes | interferon gamma |
| T762 | 70-86 | UP/O35735 | denotes | interferon gamma |
| T757 | 70-86 | UP/P63310 | denotes | interferon gamma |
| T741 | 70-86 | UP/P49708 | denotes | interferon gamma |
| T738 | 70-86 | UP/Q9QXX2 | denotes | interferon gamma |
| T728 | 127-135 | UMLS/C0150312 | denotes | presence |
| T727 | 93-96 | UMLS/C2698592 | denotes | CD3 |
| T724 | 70-86 | UP/Q4ZH68 | denotes | interferon gamma |
| T502 | 70-86 | UP/P30123 | denotes | interferon gamma |
| T491 | 70-86 | UP/O35497 | denotes | interferon gamma |
| T483 | 40-42 | UMLS/C0319022 | denotes | to |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1228 | 136-138 | IN | denotes | of |
| T1227 | 127-135 | NN | denotes | presence |
| T1226 | 123-126 | DT | denotes | the |
| T1225 | 120-122 | IN | denotes | in |
| T1224 | 106-119 | NN | denotes | costimulation |
| T1223 | 101-105 | NN | denotes | CD28 |
| T1222 | 97-100 | CC | denotes | and |
| T1221 | 93-96 | NN | denotes | CD3 |
| T1220 | 87-92 | IN | denotes | after |
| T1219 | 81-86 | NN | denotes | gamma |
| T1218 | 70-80 | NN | denotes | interferon |
| T1217 | 67-69 | IN | denotes | of |
| T1216 | 59-66 | NN | denotes | amounts |
| T1215 | 51-58 | JJ | denotes | greater |
| T1214 | 43-50 | VB | denotes | produce |
| T1213 | 40-42 | TO | denotes | to |
| T1212 | 35-39 | JJ | denotes | able |
| T1211 | 30-34 | VB | denotes | were |
| T1210 | 28-29 | -RRB- | denotes | ) |
| T1209 | 26-28 | NN | denotes | RA |
| T1208 | 25-26 | -LRB- | denotes | ( |
| T1207 | 15-24 | NN | denotes | arthritis |
| T1206 | 4-14 | JJ | denotes | rheumatoid |
| R101 | T1207 | T1206 | arg1Of | arthritis,rheumatoid |
| R102 | T1207 | T1208 | arg1Of | arthritis,( |
| R103 | T1209 | T1208 | arg2Of | RA,( |
| R104 | T1210 | T1208 | arg3Of | ),( |
| R107 | T1212 | T1211 | arg2Of | able,were |
| R108 | T1214 | T1212 | arg2Of | produce,able |
| R109 | T1214 | T1213 | arg1Of | produce,to |
| R112 | T1216 | T1214 | arg2Of | amounts,produce |
| R113 | T1216 | T1215 | arg1Of | amounts,greater |
| R114 | T1216 | T1217 | arg1Of | amounts,of |
| R115 | T1216 | T1225 | arg1Of | amounts,in |
| R116 | T1219 | T1217 | arg2Of | gamma,of |
| R117 | T1219 | T1218 | arg1Of | gamma,interferon |
| R118 | T1219 | T1220 | arg1Of | gamma,after |
| R119 | T1221 | T1222 | arg1Of | CD3,and |
| R120 | T1223 | T1222 | arg2Of | CD28,and |
| R121 | T1224 | T1220 | arg2Of | costimulation,after |
| R122 | T1224 | T1221 | arg1Of | costimulation,CD3 |
| R123 | T1224 | T1223 | arg1Of | costimulation,CD28 |
| R124 | T1227 | T1225 | arg2Of | presence,in |
| R125 | T1227 | T1226 | arg1Of | presence,the |
| R126 | T1227 | T1228 | arg1Of | presence,of |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T974 | 70-86 | Protein | denotes | interferon gamma |
| T975 | 101-105 | Protein | denotes | CD28 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1053 | 93-96 | http://www.uniprot.org/uniprot/P07766 | denotes | CD3 |
| T1052 | 93-96 | http://www.uniprot.org/uniprot/P04234 | denotes | CD3 |
| T1051 | 93-96 | http://www.uniprot.org/uniprot/P20963 | denotes | CD3 |
| T1050 | 101-105 | http://www.uniprot.org/uniprot/P10747 | denotes | CD28 |
| T1085 | 93-96 | http://www.uniprot.org/uniprot/P09693 | denotes | CD3 |
| T1038 | 70-86 | http://www.uniprot.org/uniprot/P01579 | denotes | interferon gamma |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1007 | 70-86 | http://purl.obolibrary.org/obo/GO_0005133 | denotes | interferon gamma |
ICD10
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1026 | 4-24 | http://purl.bioontology.org/ontology/ICD10/M06.9 | denotes | rheumatoid arthritis |
| T1028 | 15-24 | http://purl.bioontology.org/ontology/ICD10/M13.9 | denotes | arthritis |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1129 | 70-86 | Protein | denotes | interferon gamma |
| T1130 | 101-105 | Protein | denotes | CD28 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1930 | 101-105 | Protein | denotes | CD28 |
| T1929 | 70-86 | Protein | denotes | interferon gamma |
| T1955 | 43-50 | Gene_expression | denotes | produce |
| R630 | T1929 | T1955 | themeOf | interferon gamma,produce |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1450 | 43-50 | Gene_expression | denotes | produce |
| T1426 | 101-105 | Protein | denotes | CD28 |
| T1425 | 70-86 | Protein | denotes | interferon gamma |
| R320 | T1425 | T1450 | themeOf | interferon gamma,produce |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1495 | 43-50 | Gene_expression | denotes | produce |
| T1471 | 101-105 | Protein | denotes | CD28 |
| T1470 | 70-86 | Protein | denotes | interferon gamma |
| R335 | T1470 | T1495 | themeOf | interferon gamma,produce |
| R336 | T1471 | T1495 | themeOf | CD28,produce |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1906 | 101-119 | Positive_regulation | denotes | CD28 costimulation |
| T1891 | 93-96 | Protein | denotes | CD3 |
| T1886 | 70-80 | Protein | denotes | interferon |
| T1885 | 101-105 | Protein | denotes | CD28 |
| T1868 | 26-28 | Protein | denotes | RA |
| R619 | T1885 | T1906 | themeOf | CD28,CD28 costimulation |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1626 | 136-138 | IN | denotes | of |
| T1625 | 127-135 | NN | denotes | presence |
| T1624 | 123-126 | DT | denotes | the |
| T1623 | 120-122 | IN | denotes | in |
| T1622 | 106-119 | NN | denotes | costimulation |
| T1621 | 101-105 | NNP | denotes | CD28 |
| T1620 | 97-100 | CC | denotes | and |
| T1619 | 93-96 | NNP | denotes | CD3 |
| T1618 | 87-92 | IN | denotes | after |
| T1617 | 81-86 | NN | denotes | gamma |
| T1616 | 70-80 | NN | denotes | interferon |
| T1615 | 67-69 | IN | denotes | of |
| T1614 | 59-66 | NNS | denotes | amounts |
| T1613 | 51-58 | JJR | denotes | greater |
| T1612 | 43-50 | VB | denotes | produce |
| T1611 | 40-42 | TO | denotes | to |
| T1610 | 35-39 | JJ | denotes | able |
| T1609 | 30-34 | VBD | denotes | were |
| T1608 | 28-29 | -RRB- | denotes | ) |
| T1607 | 26-28 | NNP | denotes | RA |
| T1606 | 25-26 | -LRB- | denotes | ( |
| T1605 | 15-24 | NNS | denotes | arthritis |
| T1604 | 4-14 | JJ | denotes | rheumatoid |
| R377 | T1604 | T1605 | amod | rheumatoid,arthritis |
| R379 | T1606 | T1605 | punct | (,arthritis |
| R380 | T1607 | T1605 | appos | RA,arthritis |
| R381 | T1608 | T1605 | punct | ),arthritis |
| R383 | T1610 | T1609 | acomp | able,were |
| R384 | T1611 | T1612 | aux | to,produce |
| R385 | T1612 | T1610 | xcomp | produce,able |
| R386 | T1613 | T1614 | amod | greater,amounts |
| R387 | T1614 | T1612 | dobj | amounts,produce |
| R388 | T1615 | T1614 | prep | of,amounts |
| R389 | T1616 | T1615 | pobj | interferon,of |
| R390 | T1617 | T1614 | acl | gamma,amounts |
| R391 | T1618 | T1617 | prep | after,gamma |
| R392 | T1619 | T1618 | pobj | CD3,after |
| R393 | T1620 | T1619 | cc | and,CD3 |
| R394 | T1621 | T1622 | compound | CD28,costimulation |
| R395 | T1622 | T1619 | conj | costimulation,CD3 |
| R396 | T1623 | T1622 | prep | in,costimulation |
| R397 | T1624 | T1625 | det | the,presence |
| R398 | T1625 | T1623 | pobj | presence,in |
| R399 | T1626 | T1625 | prep | of,presence |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1098 | 70-86 | Protein | denotes | interferon gamma |
| T1099 | 93-96 | Protein | denotes | CD3 |
| T1100 | 101-105 | Protein | denotes | CD28 |
| T1103 | 43-50 | Gene_expression | denotes | produce |
| T1104 | 43-50 | Gene_expression | denotes | produce |
| T1105 | 59-66 | Gene_expression | denotes | amounts |
| R655 | T1098 | T1105 | themeOf | interferon gamma,amounts |
| R656 | T1099 | T1103 | themeOf | CD3,produce |
| R657 | T1100 | T1104 | themeOf | CD28,produce |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65 | 43-50 | Gene_expression | denotes | produce |
| T40 | 101-105 | Protein | denotes | CD28 |
| T39 | 70-86 | Protein | denotes | interferon gamma |
| R2 | T39 | T65 | themeOf | interferon gamma,produce |
| R3 | T40 | T65 | themeOf | CD28,produce |