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PMC:1064873 / 346-535 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T419 62-69 OCCURRENCE denotes produce
T395 166-168 state denotes IL
T394 163-165 country_code denotes ml
T393 160-162 country_code denotes ng
T392 139-141 country_code denotes in
T391 59-61 country_code denotes to
T171 182-188 JJ denotes normal
T170 177-181 VBD denotes were
T169 172-176 IN denotes than
T168 169-171 CD denotes 10
T167 166-169 NNP denotes IL-
T166 163-165 NN denotes ml
T165 162-163 NN denotes /
T164 160-162 NN denotes ng
T163 158-159 CD denotes 1
T162 155-157 IN denotes of
T161 146-154 NN denotes presence
T160 142-145 DT denotes the
T159 139-141 IN denotes in
T158 125-138 NN denotes costimulation
T157 122-124 CD denotes 28
T156 120-122 NNP denotes CD
T155 116-119 CC denotes and
T154 114-115 CD denotes 3
T153 112-114 NNP denotes CD
T152 106-111 IN denotes after
T151 100-105 NN denotes gamma
T150 89-99 NN denotes interferon
T149 86-88 IN denotes of
T148 78-85 NNS denotes amounts
T147 70-77 JJR denotes greater
T146 62-69 VB denotes produce
T145 59-61 TO denotes to
T144 54-58 JJ denotes able
T143 49-53 VBD denotes were
T142 47-48 ) denotes )
T141 45-47 NNP denotes RA
T140 44-45 ( denotes (
T139 34-43 NN denotes arthritis
T138 23-33 NN denotes rheumatoid
T137 16-22 JJ denotes active
T136 11-15 IN denotes with
T135 2-10 NNS denotes patients

biosemtest

Id Subject Object Predicate Lexical cue
T880 120-124 UMLS/C1332709 denotes CD28
T873 89-105 UP/P01581 denotes interferon gamma
T867 160-165 UMLS/C0439275 denotes ng/ml
T861 78-85 UMLS/C1265611 denotes amounts
T859 89-105 UP/Q62574 denotes interferon gamma
T857 106-111 UMLS/C0231290 denotes after
T854 89-105 UP/Q7TSP4 denotes interferon gamma
T851 89-105 UP/Q8SPW9 denotes interferon gamma
T845 120-124 UMLS/C1426202 denotes CD28
T842 89-105 UP/P63311 denotes interferon gamma
T833 89-105 UP/P63309 denotes interferon gamma
T828 2-10 UMLS/C1705908 denotes patients
T824 89-105 UP/P46402 denotes interferon gamma
T810 89-105 UP/P07353 denotes interferon gamma
T806 89-105 UP/Q647G2 denotes interferon gamma
T803 89-105 UP/Q865Y4 denotes interferon gamma
T794 89-105 UP/Q5CCK0 denotes interferon gamma
T791 89-105 UP/P28341 denotes interferon gamma
T788 70-77 UMLS/C1704243 denotes greater
T786 89-105 UP/Q9TV67 denotes interferon gamma
T783 89-105 UP/O77763 denotes interferon gamma
T722 70-77 UMLS/C0205393 denotes greater
T718 89-105 UP/A4PIZ9 denotes interferon gamma
T716 16-22 UMLS/C1553875 denotes active
T714 89-105 UP/Q25BC0 denotes interferon gamma
T711 89-105 UP/P01580 denotes interferon gamma
T696 89-105 UP/Q1WM28 denotes interferon gamma
T689 120-124 UMLS/C0075747 denotes CD28
T679 166-171 UMLS/C1149215 denotes IL-10
T675 89-105 UP/O73915 denotes interferon gamma
T672 89-105 UP/Q9YGB9 denotes interferon gamma
T668 89-105 UP/P79154 denotes interferon gamma
T663 89-105 UP/P01579 denotes interferon gamma
T652 89-105 UP/P42162 denotes interferon gamma
T645 89-105 UP/P17773 denotes interferon gamma
T641 89-105 UP/P42160 denotes interferon gamma
T635 89-105 UP/O57608 denotes interferon gamma
T632 54-58 UMLS/C0085732 denotes able
T631 23-43 UMLS/C0003873 denotes rheumatoid arthritis
T628 89-105 UP/O57603 denotes interferon gamma
T623 89-105 UP/Q2PE75 denotes interferon gamma
T620 89-105 UP/Q8MKF5 denotes interferon gamma
T618 106-111 UMLS/C0687676 denotes after
T613 166-171 UMLS/C1522550 denotes IL-10
T606 166-171 UMLS/C1334098 denotes IL-10
T602 89-105 UP/P28333 denotes interferon gamma
T599 89-105 UP/Q866Y6 denotes interferon gamma
T592 89-105 UP/Q5I6S9 denotes interferon gamma
T587 89-105 UP/Q865W6 denotes interferon gamma
T583 2-10 UMLS/C0030705 denotes patients
T580 146-154 UMLS/C0392148 denotes presence
T578 89-105 UP/P17803 denotes interferon gamma
T574 89-105 UMLS/C0021740 denotes interferon gamma
T572 54-58 UMLS/C1299581 denotes able
T570 89-105 UMLS/C0021745 denotes interferon gamma
T567 89-105 UP/Q9TTB0 denotes interferon gamma
T563 2-10 UMLS/C1578479 denotes patients
T556 2-10 UMLS/C1578483 denotes patients
T552 2-10 UMLS/C1578480 denotes patients
T548 2-10 UMLS/C1578481 denotes patients
T546 112-115 UMLS/C0108779 denotes CD3
T543 2-10 UMLS/C1578486 denotes patients
T538 2-10 UMLS/C1578484 denotes patients
T533 2-10 UMLS/C1578485 denotes patients
T524 16-22 UMLS/C1561511 denotes active
T523 16-22 UMLS/C1561512 denotes active
T522 16-22 UMLS/C1561513 denotes active
T516 78-85 UMLS/C1561574 denotes amounts
T512 16-22 UMLS/C0205177 denotes active
T508 89-105 UP/Q865X1 denotes interferon gamma
T468 89-105 UP/P42161 denotes interferon gamma
T462 16-22 UMLS/C1561510 denotes active
T460 16-22 UMLS/C1561509 denotes active
T459 16-22 UMLS/C1561508 denotes active
T458 16-22 UMLS/C1561507 denotes active
T443 16-22 UMLS/C1547419 denotes active
T439 70-77 UMLS/C0549177 denotes greater
T779 89-105 UP/O57571 denotes interferon gamma
T762 89-105 UP/O35735 denotes interferon gamma
T757 89-105 UP/P63310 denotes interferon gamma
T750 2-10 UMLS/C1550655 denotes patients
T741 89-105 UP/P49708 denotes interferon gamma
T738 89-105 UP/Q9QXX2 denotes interferon gamma
T728 146-154 UMLS/C0150312 denotes presence
T727 112-115 UMLS/C2698592 denotes CD3
T724 89-105 UP/Q4ZH68 denotes interferon gamma
T505 16-22 UMLS/C2347179 denotes active
T502 89-105 UP/P30123 denotes interferon gamma
T496 166-171 UMLS/C0085295 denotes IL-10
T491 89-105 UP/O35497 denotes interferon gamma
T483 59-61 UMLS/C0319022 denotes to

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1234 182-188 JJ denotes normal
T1233 177-181 VB denotes were
T1232 172-176 IN denotes than
T1231 166-171 NN denotes IL-10
T1230 160-165 NN denotes ng/ml
T1229 158-159 CD denotes 1
T1228 155-157 IN denotes of
T1227 146-154 NN denotes presence
T1226 142-145 DT denotes the
T1225 139-141 IN denotes in
T1224 125-138 NN denotes costimulation
T1223 120-124 NN denotes CD28
T1222 116-119 CC denotes and
T1221 112-115 NN denotes CD3
T1220 106-111 IN denotes after
T1219 100-105 NN denotes gamma
T1218 89-99 NN denotes interferon
T1217 86-88 IN denotes of
T1216 78-85 NN denotes amounts
T1215 70-77 JJ denotes greater
T1214 62-69 VB denotes produce
T1213 59-61 TO denotes to
T1212 54-58 JJ denotes able
T1211 49-53 VB denotes were
T1210 47-48 -RRB- denotes )
T1209 45-47 NN denotes RA
T1208 44-45 -LRB- denotes (
T1207 34-43 NN denotes arthritis
T1206 23-33 JJ denotes rheumatoid
T1205 16-22 JJ denotes active
T1204 11-15 IN denotes with
T1203 2-10 NN denotes patients
R98 T1203 T1204 arg1Of patients,with
R99 T1207 T1204 arg2Of arthritis,with
R100 T1207 T1205 arg1Of arthritis,active
R101 T1207 T1206 arg1Of arthritis,rheumatoid
R102 T1207 T1208 arg1Of arthritis,(
R103 T1209 T1208 arg2Of RA,(
R104 T1210 T1208 arg3Of ),(
R107 T1212 T1211 arg2Of able,were
R108 T1214 T1212 arg2Of produce,able
R109 T1214 T1213 arg1Of produce,to
R112 T1216 T1214 arg2Of amounts,produce
R113 T1216 T1215 arg1Of amounts,greater
R114 T1216 T1217 arg1Of amounts,of
R115 T1216 T1225 arg1Of amounts,in
R116 T1219 T1217 arg2Of gamma,of
R117 T1219 T1218 arg1Of gamma,interferon
R118 T1219 T1220 arg1Of gamma,after
R119 T1221 T1222 arg1Of CD3,and
R120 T1223 T1222 arg2Of CD28,and
R121 T1224 T1220 arg2Of costimulation,after
R122 T1224 T1221 arg1Of costimulation,CD3
R123 T1224 T1223 arg1Of costimulation,CD28
R124 T1227 T1225 arg2Of presence,in
R125 T1227 T1226 arg1Of presence,the
R126 T1227 T1228 arg1Of presence,of
R127 T1227 T1232 arg1Of presence,than
R128 T1229 T1230 arg1Of 1,ng/ml
R129 T1231 T1228 arg2Of IL-10,of
R130 T1231 T1229 arg1Of IL-10,1
R131 T1233 T1232 arg2Of were,than

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T974 89-105 Protein denotes interferon gamma
T975 120-124 Protein denotes CD28
T976 166-171 Protein denotes IL-10

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1053 112-115 http://www.uniprot.org/uniprot/P07766 denotes CD3
T1052 112-115 http://www.uniprot.org/uniprot/P04234 denotes CD3
T1051 112-115 http://www.uniprot.org/uniprot/P20963 denotes CD3
T1050 120-124 http://www.uniprot.org/uniprot/P10747 denotes CD28
T1085 112-115 http://www.uniprot.org/uniprot/P09693 denotes CD3
T1031 166-171 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T1038 89-105 http://www.uniprot.org/uniprot/P01579 denotes interferon gamma

GO-MF

Id Subject Object Predicate Lexical cue
T1007 89-105 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon gamma
T1000 166-171 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

ICD10

Id Subject Object Predicate Lexical cue
T1026 23-43 http://purl.bioontology.org/ontology/ICD10/M06.9 denotes rheumatoid arthritis
T1028 34-43 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis

simple1

Id Subject Object Predicate Lexical cue
T1129 89-105 Protein denotes interferon gamma
T1130 120-124 Protein denotes CD28
T1131 166-171 Protein denotes IL-10

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1930 120-124 Protein denotes CD28
T1929 89-105 Protein denotes interferon gamma
T1925 166-171 Protein denotes IL-10
T1955 62-69 Gene_expression denotes produce
R630 T1929 T1955 themeOf interferon gamma,produce

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1450 62-69 Gene_expression denotes produce
T1426 120-124 Protein denotes CD28
T1425 89-105 Protein denotes interferon gamma
T1421 166-171 Protein denotes IL-10
R320 T1425 T1450 themeOf interferon gamma,produce

DLUT931

Id Subject Object Predicate Lexical cue
T1495 62-69 Gene_expression denotes produce
T1471 120-124 Protein denotes CD28
T1470 89-105 Protein denotes interferon gamma
T1466 166-171 Protein denotes IL-10
R335 T1470 T1495 themeOf interferon gamma,produce
R336 T1471 T1495 themeOf CD28,produce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1906 120-138 Positive_regulation denotes CD28 costimulation
T1891 112-115 Protein denotes CD3
T1886 89-99 Protein denotes interferon
T1885 120-124 Protein denotes CD28
T1868 45-47 Protein denotes RA
T1859 158-171 Protein denotes 1 ng/ml IL-10
R619 T1885 T1906 themeOf CD28,CD28 costimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1632 182-188 JJ denotes normal
T1631 177-181 VBD denotes were
T1630 172-176 IN denotes than
T1629 166-171 NN denotes IL-10
T1628 160-165 NN denotes ng/ml
T1627 158-159 CD denotes 1
T1626 155-157 IN denotes of
T1625 146-154 NN denotes presence
T1624 142-145 DT denotes the
T1623 139-141 IN denotes in
T1622 125-138 NN denotes costimulation
T1621 120-124 NNP denotes CD28
T1620 116-119 CC denotes and
T1619 112-115 NNP denotes CD3
T1618 106-111 IN denotes after
T1617 100-105 NN denotes gamma
T1616 89-99 NN denotes interferon
T1615 86-88 IN denotes of
T1614 78-85 NNS denotes amounts
T1613 70-77 JJR denotes greater
T1612 62-69 VB denotes produce
T1611 59-61 TO denotes to
T1610 54-58 JJ denotes able
T1609 49-53 VBD denotes were
T1608 47-48 -RRB- denotes )
T1607 45-47 NNP denotes RA
T1606 44-45 -LRB- denotes (
T1605 34-43 NNS denotes arthritis
T1604 23-33 JJ denotes rheumatoid
T1603 16-22 JJ denotes active
T1602 11-15 IN denotes with
T1601 2-10 NNS denotes patients
R375 T1602 T1601 prep with,patients
R376 T1603 T1605 amod active,arthritis
R377 T1604 T1605 amod rheumatoid,arthritis
R378 T1605 T1602 pobj arthritis,with
R379 T1606 T1605 punct (,arthritis
R380 T1607 T1605 appos RA,arthritis
R381 T1608 T1605 punct ),arthritis
R383 T1610 T1609 acomp able,were
R384 T1611 T1612 aux to,produce
R385 T1612 T1610 xcomp produce,able
R386 T1613 T1614 amod greater,amounts
R387 T1614 T1612 dobj amounts,produce
R388 T1615 T1614 prep of,amounts
R389 T1616 T1615 pobj interferon,of
R390 T1617 T1614 acl gamma,amounts
R391 T1618 T1617 prep after,gamma
R392 T1619 T1618 pobj CD3,after
R393 T1620 T1619 cc and,CD3
R394 T1621 T1622 compound CD28,costimulation
R395 T1622 T1619 conj costimulation,CD3
R396 T1623 T1622 prep in,costimulation
R397 T1624 T1625 det the,presence
R398 T1625 T1623 pobj presence,in
R399 T1626 T1625 prep of,presence
R400 T1627 T1629 nummod 1,IL-10
R401 T1628 T1629 compound ng/ml,IL-10
R402 T1629 T1626 pobj IL-10,of
R403 T1630 T1631 mark than,were
R404 T1631 T1614 advcl were,amounts

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1098 89-105 Protein denotes interferon gamma
T1099 112-115 Protein denotes CD3
T1100 120-124 Protein denotes CD28
T1103 62-69 Gene_expression denotes produce
T1104 62-69 Gene_expression denotes produce
T1105 78-85 Gene_expression denotes amounts
R655 T1098 T1105 themeOf interferon gamma,amounts
R656 T1099 T1103 themeOf CD3,produce
R657 T1100 T1104 themeOf CD28,produce

testone

Id Subject Object Predicate Lexical cue
T65 62-69 Gene_expression denotes produce
T41 166-171 Protein denotes IL-10
T40 120-124 Protein denotes CD28
T39 89-105 Protein denotes interferon gamma
R2 T39 T65 themeOf interferon gamma,produce
R4 T41 T65 themeOf IL-10,produce
R3 T40 T65 themeOf CD28,produce