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PMC:1064873 / 320-529 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T419 88-95 OCCURRENCE denotes produce
T395 192-194 state denotes IL
T394 189-191 country_code denotes ml
T393 186-188 country_code denotes ng
T392 165-167 country_code denotes in
T391 85-87 country_code denotes to
T170 203-207 VBD denotes were
T169 198-202 IN denotes than
T168 195-197 CD denotes 10
T167 192-195 NNP denotes IL-
T166 189-191 NN denotes ml
T165 188-189 NN denotes /
T164 186-188 NN denotes ng
T163 184-185 CD denotes 1
T162 181-183 IN denotes of
T161 172-180 NN denotes presence
T160 168-171 DT denotes the
T159 165-167 IN denotes in
T158 151-164 NN denotes costimulation
T157 148-150 CD denotes 28
T156 146-148 NNP denotes CD
T155 142-145 CC denotes and
T154 140-141 CD denotes 3
T153 138-140 NNP denotes CD
T152 132-137 IN denotes after
T151 126-131 NN denotes gamma
T150 115-125 NN denotes interferon
T149 112-114 IN denotes of
T148 104-111 NNS denotes amounts
T147 96-103 JJR denotes greater
T146 88-95 VB denotes produce
T145 85-87 TO denotes to
T144 80-84 JJ denotes able
T143 75-79 VBD denotes were
T142 73-74 ) denotes )
T141 71-73 NNP denotes RA
T140 70-71 ( denotes (
T139 60-69 NN denotes arthritis
T138 49-59 NN denotes rheumatoid
T137 42-48 JJ denotes active
T136 37-41 IN denotes with
T135 28-36 NNS denotes patients
T134 23-27 IN denotes from
T133 17-22 NNS denotes cells
T132 15-16 NN denotes T
T131 13-14 NN denotes +
T130 12-13 CD denotes 4
T129 10-12 NNP denotes CD
T128 4-9 NN denotes blood

biosemtest

Id Subject Object Predicate Lexical cue
T880 146-150 UMLS/C1332709 denotes CD28
T873 115-131 UP/P01581 denotes interferon gamma
T867 186-191 UMLS/C0439275 denotes ng/ml
T861 104-111 UMLS/C1265611 denotes amounts
T859 115-131 UP/Q62574 denotes interferon gamma
T857 132-137 UMLS/C0231290 denotes after
T854 115-131 UP/Q7TSP4 denotes interferon gamma
T851 115-131 UP/Q8SPW9 denotes interferon gamma
T845 146-150 UMLS/C1426202 denotes CD28
T842 115-131 UP/P63311 denotes interferon gamma
T833 115-131 UP/P63309 denotes interferon gamma
T828 28-36 UMLS/C1705908 denotes patients
T824 115-131 UP/P46402 denotes interferon gamma
T810 115-131 UP/P07353 denotes interferon gamma
T806 115-131 UP/Q647G2 denotes interferon gamma
T803 115-131 UP/Q865Y4 denotes interferon gamma
T794 115-131 UP/Q5CCK0 denotes interferon gamma
T791 115-131 UP/P28341 denotes interferon gamma
T788 96-103 UMLS/C1704243 denotes greater
T786 115-131 UP/Q9TV67 denotes interferon gamma
T783 115-131 UP/O77763 denotes interferon gamma
T722 96-103 UMLS/C0205393 denotes greater
T718 115-131 UP/A4PIZ9 denotes interferon gamma
T716 42-48 UMLS/C1553875 denotes active
T714 115-131 UP/Q25BC0 denotes interferon gamma
T711 115-131 UP/P01580 denotes interferon gamma
T701 15-22 UMLS/C0039194 denotes T cells
T696 115-131 UP/Q1WM28 denotes interferon gamma
T689 146-150 UMLS/C0075747 denotes CD28
T679 192-197 UMLS/C1149215 denotes IL-10
T675 115-131 UP/O73915 denotes interferon gamma
T672 115-131 UP/Q9YGB9 denotes interferon gamma
T668 115-131 UP/P79154 denotes interferon gamma
T663 115-131 UP/P01579 denotes interferon gamma
T652 115-131 UP/P42162 denotes interferon gamma
T645 115-131 UP/P17773 denotes interferon gamma
T641 115-131 UP/P42160 denotes interferon gamma
T635 115-131 UP/O57608 denotes interferon gamma
T632 80-84 UMLS/C0085732 denotes able
T631 49-69 UMLS/C0003873 denotes rheumatoid arthritis
T628 115-131 UP/O57603 denotes interferon gamma
T623 115-131 UP/Q2PE75 denotes interferon gamma
T620 115-131 UP/Q8MKF5 denotes interferon gamma
T618 132-137 UMLS/C0687676 denotes after
T613 192-197 UMLS/C1522550 denotes IL-10
T606 192-197 UMLS/C1334098 denotes IL-10
T602 115-131 UP/P28333 denotes interferon gamma
T599 115-131 UP/Q866Y6 denotes interferon gamma
T592 115-131 UP/Q5I6S9 denotes interferon gamma
T587 115-131 UP/Q865W6 denotes interferon gamma
T583 28-36 UMLS/C0030705 denotes patients
T580 172-180 UMLS/C0392148 denotes presence
T578 115-131 UP/P17803 denotes interferon gamma
T574 115-131 UMLS/C0021740 denotes interferon gamma
T572 80-84 UMLS/C1299581 denotes able
T570 115-131 UMLS/C0021745 denotes interferon gamma
T567 115-131 UP/Q9TTB0 denotes interferon gamma
T563 28-36 UMLS/C1578479 denotes patients
T556 28-36 UMLS/C1578483 denotes patients
T552 28-36 UMLS/C1578480 denotes patients
T548 28-36 UMLS/C1578481 denotes patients
T546 138-141 UMLS/C0108779 denotes CD3
T543 28-36 UMLS/C1578486 denotes patients
T538 28-36 UMLS/C1578484 denotes patients
T533 28-36 UMLS/C1578485 denotes patients
T524 42-48 UMLS/C1561511 denotes active
T523 42-48 UMLS/C1561512 denotes active
T522 42-48 UMLS/C1561513 denotes active
T516 104-111 UMLS/C1561574 denotes amounts
T512 42-48 UMLS/C0205177 denotes active
T508 115-131 UP/Q865X1 denotes interferon gamma
T468 115-131 UP/P42161 denotes interferon gamma
T462 42-48 UMLS/C1561510 denotes active
T460 42-48 UMLS/C1561509 denotes active
T459 42-48 UMLS/C1561508 denotes active
T458 42-48 UMLS/C1561507 denotes active
T443 42-48 UMLS/C1547419 denotes active
T439 96-103 UMLS/C0549177 denotes greater
T779 115-131 UP/O57571 denotes interferon gamma
T762 115-131 UP/O35735 denotes interferon gamma
T757 115-131 UP/P63310 denotes interferon gamma
T750 28-36 UMLS/C1550655 denotes patients
T741 115-131 UP/P49708 denotes interferon gamma
T738 115-131 UP/Q9QXX2 denotes interferon gamma
T728 172-180 UMLS/C0150312 denotes presence
T727 138-141 UMLS/C2698592 denotes CD3
T724 115-131 UP/Q4ZH68 denotes interferon gamma
T505 42-48 UMLS/C2347179 denotes active
T502 115-131 UP/P30123 denotes interferon gamma
T496 192-197 UMLS/C0085295 denotes IL-10
T491 115-131 UP/O35497 denotes interferon gamma
T483 85-87 UMLS/C0319022 denotes to

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1233 203-207 VB denotes were
T1232 198-202 IN denotes than
T1231 192-197 NN denotes IL-10
T1230 186-191 NN denotes ng/ml
T1229 184-185 CD denotes 1
T1228 181-183 IN denotes of
T1227 172-180 NN denotes presence
T1226 168-171 DT denotes the
T1225 165-167 IN denotes in
T1224 151-164 NN denotes costimulation
T1223 146-150 NN denotes CD28
T1222 142-145 CC denotes and
T1221 138-141 NN denotes CD3
T1220 132-137 IN denotes after
T1219 126-131 NN denotes gamma
T1218 115-125 NN denotes interferon
T1217 112-114 IN denotes of
T1216 104-111 NN denotes amounts
T1215 96-103 JJ denotes greater
T1214 88-95 VB denotes produce
T1213 85-87 TO denotes to
T1212 80-84 JJ denotes able
T1211 75-79 VB denotes were
T1210 73-74 -RRB- denotes )
T1209 71-73 NN denotes RA
T1208 70-71 -LRB- denotes (
T1207 60-69 NN denotes arthritis
T1206 49-59 JJ denotes rheumatoid
T1205 42-48 JJ denotes active
T1204 37-41 IN denotes with
T1203 28-36 NN denotes patients
T1202 23-27 IN denotes from
T1201 17-22 NN denotes cells
T1200 15-16 NN denotes T
T1199 10-14 JJ denotes CD4+
T1198 4-9 NN denotes blood
R90 T1201 T1198 arg1Of cells,blood
R91 T1201 T1199 arg1Of cells,CD4+
R92 T1201 T1200 arg1Of cells,T
R93 T1201 T1202 arg1Of cells,from
R94 T1201 T1211 arg1Of cells,were
R95 T1201 T1212 arg1Of cells,able
R96 T1201 T1214 arg1Of cells,produce
R97 T1203 T1202 arg2Of patients,from
R98 T1203 T1204 arg1Of patients,with
R99 T1207 T1204 arg2Of arthritis,with
R100 T1207 T1205 arg1Of arthritis,active
R101 T1207 T1206 arg1Of arthritis,rheumatoid
R102 T1207 T1208 arg1Of arthritis,(
R103 T1209 T1208 arg2Of RA,(
R104 T1210 T1208 arg3Of ),(
R107 T1212 T1211 arg2Of able,were
R108 T1214 T1212 arg2Of produce,able
R109 T1214 T1213 arg1Of produce,to
R112 T1216 T1214 arg2Of amounts,produce
R113 T1216 T1215 arg1Of amounts,greater
R114 T1216 T1217 arg1Of amounts,of
R115 T1216 T1225 arg1Of amounts,in
R116 T1219 T1217 arg2Of gamma,of
R117 T1219 T1218 arg1Of gamma,interferon
R118 T1219 T1220 arg1Of gamma,after
R119 T1221 T1222 arg1Of CD3,and
R120 T1223 T1222 arg2Of CD28,and
R121 T1224 T1220 arg2Of costimulation,after
R122 T1224 T1221 arg1Of costimulation,CD3
R123 T1224 T1223 arg1Of costimulation,CD28
R124 T1227 T1225 arg2Of presence,in
R125 T1227 T1226 arg1Of presence,the
R126 T1227 T1228 arg1Of presence,of
R127 T1227 T1232 arg1Of presence,than
R128 T1229 T1230 arg1Of 1,ng/ml
R129 T1231 T1228 arg2Of IL-10,of
R130 T1231 T1229 arg1Of IL-10,1
R131 T1233 T1232 arg2Of were,than

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T973 10-13 Protein denotes CD4
T974 115-131 Protein denotes interferon gamma
T975 146-150 Protein denotes CD28
T976 192-197 Protein denotes IL-10

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1053 138-141 http://www.uniprot.org/uniprot/P07766 denotes CD3
T1052 138-141 http://www.uniprot.org/uniprot/P04234 denotes CD3
T1051 138-141 http://www.uniprot.org/uniprot/P20963 denotes CD3
T1050 146-150 http://www.uniprot.org/uniprot/P10747 denotes CD28
T1085 138-141 http://www.uniprot.org/uniprot/P09693 denotes CD3
T1031 192-197 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T1038 115-131 http://www.uniprot.org/uniprot/P01579 denotes interferon gamma
T1041 10-13 http://www.uniprot.org/uniprot/P01730 denotes CD4

UBERON-AE

Id Subject Object Predicate Lexical cue
T434 4-9 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-CC

Id Subject Object Predicate Lexical cue
T1015 17-22 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T1007 115-131 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon gamma
T1000 192-197 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

ICD10

Id Subject Object Predicate Lexical cue
T1026 49-69 http://purl.bioontology.org/ontology/ICD10/M06.9 denotes rheumatoid arthritis
T1028 60-69 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis

simple1

Id Subject Object Predicate Lexical cue
T1128 10-13 Protein denotes CD4
T1129 115-131 Protein denotes interferon gamma
T1130 146-150 Protein denotes CD28
T1131 192-197 Protein denotes IL-10

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1930 146-150 Protein denotes CD28
T1929 115-131 Protein denotes interferon gamma
T1928 10-13 Protein denotes CD4
T1925 192-197 Protein denotes IL-10
T1955 88-95 Gene_expression denotes produce
R630 T1929 T1955 themeOf interferon gamma,produce

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1450 88-95 Gene_expression denotes produce
T1426 146-150 Protein denotes CD28
T1425 115-131 Protein denotes interferon gamma
T1424 10-13 Protein denotes CD4
T1421 192-197 Protein denotes IL-10
R320 T1425 T1450 themeOf interferon gamma,produce

DLUT931

Id Subject Object Predicate Lexical cue
T1495 88-95 Gene_expression denotes produce
T1471 146-150 Protein denotes CD28
T1470 115-131 Protein denotes interferon gamma
T1469 10-13 Protein denotes CD4
T1466 192-197 Protein denotes IL-10
R335 T1470 T1495 themeOf interferon gamma,produce
R336 T1471 T1495 themeOf CD28,produce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1906 146-164 Positive_regulation denotes CD28 costimulation
T1903 15-74 Entity denotes T cells from patients with active rheumatoid arthritis (RA)
T1891 138-141 Protein denotes CD3
T1886 115-125 Protein denotes interferon
T1885 146-150 Protein denotes CD28
T1868 71-73 Protein denotes RA
T1866 10-13 Protein denotes CD4
T1859 184-197 Protein denotes 1 ng/ml IL-10
R619 T1885 T1906 themeOf CD28,CD28 costimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1631 203-207 VBD denotes were
T1630 198-202 IN denotes than
T1629 192-197 NN denotes IL-10
T1628 186-191 NN denotes ng/ml
T1627 184-185 CD denotes 1
T1626 181-183 IN denotes of
T1625 172-180 NN denotes presence
T1624 168-171 DT denotes the
T1623 165-167 IN denotes in
T1622 151-164 NN denotes costimulation
T1621 146-150 NNP denotes CD28
T1620 142-145 CC denotes and
T1619 138-141 NNP denotes CD3
T1618 132-137 IN denotes after
T1617 126-131 NN denotes gamma
T1616 115-125 NN denotes interferon
T1615 112-114 IN denotes of
T1614 104-111 NNS denotes amounts
T1613 96-103 JJR denotes greater
T1612 88-95 VB denotes produce
T1611 85-87 TO denotes to
T1610 80-84 JJ denotes able
T1609 75-79 VBD denotes were
T1608 73-74 -RRB- denotes )
T1607 71-73 NNP denotes RA
T1606 70-71 -LRB- denotes (
T1605 60-69 NNS denotes arthritis
T1604 49-59 JJ denotes rheumatoid
T1603 42-48 JJ denotes active
T1602 37-41 IN denotes with
T1601 28-36 NNS denotes patients
T1600 23-27 IN denotes from
T1595 4-9 NN denotes blood
T1596 10-13 NNP denotes CD4
T1597 13-14 NNP denotes +
T1598 15-16 NNP denotes T
T1599 17-22 NNS denotes cells
R373 T1600 T1599 prep from,cells
R374 T1601 T1600 pobj patients,from
R375 T1602 T1601 prep with,patients
R376 T1603 T1605 amod active,arthritis
R377 T1604 T1605 amod rheumatoid,arthritis
R378 T1605 T1602 pobj arthritis,with
R379 T1606 T1605 punct (,arthritis
R380 T1607 T1605 appos RA,arthritis
R381 T1608 T1605 punct ),arthritis
R383 T1610 T1609 acomp able,were
R384 T1611 T1612 aux to,produce
R385 T1612 T1610 xcomp produce,able
R386 T1613 T1614 amod greater,amounts
R387 T1614 T1612 dobj amounts,produce
R388 T1615 T1614 prep of,amounts
R389 T1616 T1615 pobj interferon,of
R390 T1617 T1614 acl gamma,amounts
R391 T1618 T1617 prep after,gamma
R392 T1619 T1618 pobj CD3,after
R393 T1620 T1619 cc and,CD3
R394 T1621 T1622 compound CD28,costimulation
R395 T1622 T1619 conj costimulation,CD3
R396 T1623 T1622 prep in,costimulation
R397 T1624 T1625 det the,presence
R398 T1625 T1623 pobj presence,in
R399 T1626 T1625 prep of,presence
R400 T1627 T1629 nummod 1,IL-10
R401 T1628 T1629 compound ng/ml,IL-10
R402 T1629 T1626 pobj IL-10,of
R403 T1630 T1631 mark than,were
R404 T1631 T1614 advcl were,amounts
R706 T1595 T1599 compound blood,cells
R707 T1596 T1599 compound CD4,cells
R708 T1597 T1599 compound +,cells
R709 T1598 T1599 compound T,cells
R710 T1599 T1609 nsubj cells,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1097 10-14 Protein denotes CD4+
T1098 115-131 Protein denotes interferon gamma
T1099 138-141 Protein denotes CD3
T1100 146-150 Protein denotes CD28
T1103 88-95 Gene_expression denotes produce
T1104 88-95 Gene_expression denotes produce
T1105 104-111 Gene_expression denotes amounts
R655 T1098 T1105 themeOf interferon gamma,amounts
R656 T1099 T1103 themeOf CD3,produce
R657 T1100 T1104 themeOf CD28,produce

testone

Id Subject Object Predicate Lexical cue
T65 88-95 Gene_expression denotes produce
T41 192-197 Protein denotes IL-10
T40 146-150 Protein denotes CD28
T39 115-131 Protein denotes interferon gamma
T38 10-13 Protein denotes CD4
R2 T39 T65 themeOf interferon gamma,produce
R4 T41 T65 themeOf IL-10,produce
R3 T40 T65 themeOf CD28,produce