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PMC:1064873 / 271-500 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T420 31-36 OCCURRENCE denotes found
T419 137-144 OCCURRENCE denotes produce
T392 214-216 country_code denotes in
T391 134-136 country_code denotes to
T390 28-30 stop denotes We
T161 221-229 NN denotes presence
T160 217-220 DT denotes the
T159 214-216 IN denotes in
T158 200-213 NN denotes costimulation
T157 197-199 CD denotes 28
T156 195-197 NNP denotes CD
T155 191-194 CC denotes and
T154 189-190 CD denotes 3
T153 187-189 NNP denotes CD
T152 181-186 IN denotes after
T151 175-180 NN denotes gamma
T150 164-174 NN denotes interferon
T149 161-163 IN denotes of
T148 153-160 NNS denotes amounts
T147 145-152 JJR denotes greater
T146 137-144 VB denotes produce
T145 134-136 TO denotes to
T144 129-133 JJ denotes able
T143 124-128 VBD denotes were
T142 122-123 ) denotes )
T141 120-122 NNP denotes RA
T140 119-120 ( denotes (
T139 109-118 NN denotes arthritis
T138 98-108 NN denotes rheumatoid
T137 91-97 JJ denotes active
T136 86-90 IN denotes with
T135 77-85 NNS denotes patients
T134 72-76 IN denotes from
T133 66-71 NNS denotes cells
T132 64-65 NN denotes T
T131 62-63 NN denotes +
T130 61-62 CD denotes 4
T129 59-61 NNP denotes CD
T128 53-58 NN denotes blood
T127 42-52 JJ denotes peripheral
T126 37-41 IN denotes that
T125 31-36 VBD denotes found
T124 28-30 PRP denotes We
T123 26-27 . denotes .
T122 19-26 NN denotes pathway
T121 9-18 VBG denotes signaling
T120 6-8 CD denotes 28
T119 4-6 NNP denotes CD
T118 0-3 DT denotes the

biosemtest

Id Subject Object Predicate Lexical cue
T880 195-199 UMLS/C1332709 denotes CD28
T879 4-8 UMLS/C1332709 denotes CD28
T873 164-180 UP/P01581 denotes interferon gamma
T861 153-160 UMLS/C1265611 denotes amounts
T859 164-180 UP/Q62574 denotes interferon gamma
T857 181-186 UMLS/C0231290 denotes after
T854 164-180 UP/Q7TSP4 denotes interferon gamma
T851 164-180 UP/Q8SPW9 denotes interferon gamma
T845 195-199 UMLS/C1426202 denotes CD28
T844 4-8 UMLS/C1426202 denotes CD28
T842 164-180 UP/P63311 denotes interferon gamma
T833 164-180 UP/P63309 denotes interferon gamma
T828 77-85 UMLS/C1705908 denotes patients
T824 164-180 UP/P46402 denotes interferon gamma
T810 164-180 UP/P07353 denotes interferon gamma
T808 31-36 UMLS/C0243095 denotes found
T806 164-180 UP/Q647G2 denotes interferon gamma
T803 164-180 UP/Q865Y4 denotes interferon gamma
T794 164-180 UP/Q5CCK0 denotes interferon gamma
T791 164-180 UP/P28341 denotes interferon gamma
T788 145-152 UMLS/C1704243 denotes greater
T786 164-180 UP/Q9TV67 denotes interferon gamma
T783 164-180 UP/O77763 denotes interferon gamma
T722 145-152 UMLS/C0205393 denotes greater
T718 164-180 UP/A4PIZ9 denotes interferon gamma
T716 91-97 UMLS/C1553875 denotes active
T714 164-180 UP/Q25BC0 denotes interferon gamma
T711 164-180 UP/P01580 denotes interferon gamma
T701 64-71 UMLS/C0039194 denotes T cells
T696 164-180 UP/Q1WM28 denotes interferon gamma
T690 42-58 UMLS/C0229664 denotes peripheral blood
T689 195-199 UMLS/C0075747 denotes CD28
T688 4-8 UMLS/C0075747 denotes CD28
T675 164-180 UP/O73915 denotes interferon gamma
T672 164-180 UP/Q9YGB9 denotes interferon gamma
T668 164-180 UP/P79154 denotes interferon gamma
T663 164-180 UP/P01579 denotes interferon gamma
T652 164-180 UP/P42162 denotes interferon gamma
T645 164-180 UP/P17773 denotes interferon gamma
T641 164-180 UP/P42160 denotes interferon gamma
T635 164-180 UP/O57608 denotes interferon gamma
T632 129-133 UMLS/C0085732 denotes able
T631 98-118 UMLS/C0003873 denotes rheumatoid arthritis
T628 164-180 UP/O57603 denotes interferon gamma
T623 164-180 UP/Q2PE75 denotes interferon gamma
T620 164-180 UP/Q8MKF5 denotes interferon gamma
T618 181-186 UMLS/C0687676 denotes after
T602 164-180 UP/P28333 denotes interferon gamma
T599 164-180 UP/Q866Y6 denotes interferon gamma
T592 164-180 UP/Q5I6S9 denotes interferon gamma
T587 164-180 UP/Q865W6 denotes interferon gamma
T583 77-85 UMLS/C0030705 denotes patients
T580 221-229 UMLS/C0392148 denotes presence
T578 164-180 UP/P17803 denotes interferon gamma
T574 164-180 UMLS/C0021740 denotes interferon gamma
T572 129-133 UMLS/C1299581 denotes able
T570 164-180 UMLS/C0021745 denotes interferon gamma
T567 164-180 UP/Q9TTB0 denotes interferon gamma
T563 77-85 UMLS/C1578479 denotes patients
T556 77-85 UMLS/C1578483 denotes patients
T552 77-85 UMLS/C1578480 denotes patients
T548 77-85 UMLS/C1578481 denotes patients
T546 187-190 UMLS/C0108779 denotes CD3
T543 77-85 UMLS/C1578486 denotes patients
T538 77-85 UMLS/C1578484 denotes patients
T533 77-85 UMLS/C1578485 denotes patients
T524 91-97 UMLS/C1561511 denotes active
T523 91-97 UMLS/C1561512 denotes active
T522 91-97 UMLS/C1561513 denotes active
T517 9-26 UMLS/C0086982 denotes signaling pathway
T516 153-160 UMLS/C1561574 denotes amounts
T512 91-97 UMLS/C0205177 denotes active
T508 164-180 UP/Q865X1 denotes interferon gamma
T468 164-180 UP/P42161 denotes interferon gamma
T462 91-97 UMLS/C1561510 denotes active
T460 91-97 UMLS/C1561509 denotes active
T459 91-97 UMLS/C1561508 denotes active
T458 91-97 UMLS/C1561507 denotes active
T443 91-97 UMLS/C1547419 denotes active
T439 145-152 UMLS/C0549177 denotes greater
T779 164-180 UP/O57571 denotes interferon gamma
T768 31-36 UMLS/C0037088 denotes found
T762 164-180 UP/O35735 denotes interferon gamma
T760 9-26 UMLS/C0037080 denotes signaling pathway
T757 164-180 UP/P63310 denotes interferon gamma
T750 77-85 UMLS/C1550655 denotes patients
T741 164-180 UP/P49708 denotes interferon gamma
T738 164-180 UP/Q9QXX2 denotes interferon gamma
T728 221-229 UMLS/C0150312 denotes presence
T727 187-190 UMLS/C2698592 denotes CD3
T724 164-180 UP/Q4ZH68 denotes interferon gamma
T505 91-97 UMLS/C2347179 denotes active
T502 164-180 UP/P30123 denotes interferon gamma
T491 164-180 UP/O35497 denotes interferon gamma
T483 134-136 UMLS/C0319022 denotes to

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1227 221-229 NN denotes presence
T1226 217-220 DT denotes the
T1225 214-216 IN denotes in
T1224 200-213 NN denotes costimulation
T1223 195-199 NN denotes CD28
T1222 191-194 CC denotes and
T1221 187-190 NN denotes CD3
T1220 181-186 IN denotes after
T1219 175-180 NN denotes gamma
T1218 164-174 NN denotes interferon
T1217 161-163 IN denotes of
T1216 153-160 NN denotes amounts
T1215 145-152 JJ denotes greater
T1214 137-144 VB denotes produce
T1213 134-136 TO denotes to
T1212 129-133 JJ denotes able
T1211 124-128 VB denotes were
T1210 122-123 -RRB- denotes )
T1209 120-122 NN denotes RA
T1208 119-120 -LRB- denotes (
T1207 109-118 NN denotes arthritis
T1206 98-108 JJ denotes rheumatoid
T1205 91-97 JJ denotes active
T1204 86-90 IN denotes with
T1203 77-85 NN denotes patients
T1202 72-76 IN denotes from
T1201 66-71 NN denotes cells
T1200 64-65 NN denotes T
T1199 59-63 JJ denotes CD4+
T1198 53-58 NN denotes blood
T1197 42-52 JJ denotes peripheral
T1196 37-41 IN denotes that
T1195 31-36 VB denotes found
T1194 28-30 PRP denotes We
T1193 19-26 NN denotes pathway
T1192 9-18 NN denotes signaling
T1191 4-8 NN denotes CD28
T1190 0-3 DT denotes the
R85 T1193 T1190 arg1Of pathway,the
R86 T1193 T1191 arg1Of pathway,CD28
R87 T1193 T1192 arg1Of pathway,signaling
R88 T1194 T1195 arg1Of We,found
R89 T1201 T1197 arg1Of cells,peripheral
R90 T1201 T1198 arg1Of cells,blood
R91 T1201 T1199 arg1Of cells,CD4+
R92 T1201 T1200 arg1Of cells,T
R93 T1201 T1202 arg1Of cells,from
R94 T1201 T1211 arg1Of cells,were
R95 T1201 T1212 arg1Of cells,able
R96 T1201 T1214 arg1Of cells,produce
R97 T1203 T1202 arg2Of patients,from
R98 T1203 T1204 arg1Of patients,with
R99 T1207 T1204 arg2Of arthritis,with
R100 T1207 T1205 arg1Of arthritis,active
R101 T1207 T1206 arg1Of arthritis,rheumatoid
R102 T1207 T1208 arg1Of arthritis,(
R103 T1209 T1208 arg2Of RA,(
R104 T1210 T1208 arg3Of ),(
R105 T1211 T1195 arg2Of were,found
R106 T1211 T1196 arg1Of were,that
R107 T1212 T1211 arg2Of able,were
R108 T1214 T1212 arg2Of produce,able
R109 T1214 T1213 arg1Of produce,to
R112 T1216 T1214 arg2Of amounts,produce
R113 T1216 T1215 arg1Of amounts,greater
R114 T1216 T1217 arg1Of amounts,of
R115 T1216 T1225 arg1Of amounts,in
R116 T1219 T1217 arg2Of gamma,of
R117 T1219 T1218 arg1Of gamma,interferon
R118 T1219 T1220 arg1Of gamma,after
R119 T1221 T1222 arg1Of CD3,and
R120 T1223 T1222 arg2Of CD28,and
R121 T1224 T1220 arg2Of costimulation,after
R122 T1224 T1221 arg1Of costimulation,CD3
R123 T1224 T1223 arg1Of costimulation,CD28
R124 T1227 T1225 arg2Of presence,in
R125 T1227 T1226 arg1Of presence,the

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T972 4-8 Protein denotes CD28
T973 59-62 Protein denotes CD4
T974 164-180 Protein denotes interferon gamma
T975 195-199 Protein denotes CD28

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1053 187-190 http://www.uniprot.org/uniprot/P07766 denotes CD3
T1052 187-190 http://www.uniprot.org/uniprot/P04234 denotes CD3
T1051 187-190 http://www.uniprot.org/uniprot/P20963 denotes CD3
T1050 195-199 http://www.uniprot.org/uniprot/P10747 denotes CD28
T1049 4-8 http://www.uniprot.org/uniprot/P10747 denotes CD28
T1085 187-190 http://www.uniprot.org/uniprot/P09693 denotes CD3
T1038 164-180 http://www.uniprot.org/uniprot/P01579 denotes interferon gamma
T1041 59-62 http://www.uniprot.org/uniprot/P01730 denotes CD4

UBERON-AE

Id Subject Object Predicate Lexical cue
T434 53-58 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T906 9-26 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathway
T899 9-18 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T1015 66-71 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T1007 164-180 http://purl.obolibrary.org/obo/GO_0005133 denotes interferon gamma

ICD10

Id Subject Object Predicate Lexical cue
T1026 98-118 http://purl.bioontology.org/ontology/ICD10/M06.9 denotes rheumatoid arthritis
T1028 109-118 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis

simple1

Id Subject Object Predicate Lexical cue
T1127 4-8 Protein denotes CD28
T1128 59-62 Protein denotes CD4
T1129 164-180 Protein denotes interferon gamma
T1130 195-199 Protein denotes CD28

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1930 195-199 Protein denotes CD28
T1929 164-180 Protein denotes interferon gamma
T1928 59-62 Protein denotes CD4
T1924 4-8 Protein denotes CD28
T1955 137-144 Gene_expression denotes produce
R630 T1929 T1955 themeOf interferon gamma,produce

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1450 137-144 Gene_expression denotes produce
T1426 195-199 Protein denotes CD28
T1425 164-180 Protein denotes interferon gamma
T1424 59-62 Protein denotes CD4
T1420 4-8 Protein denotes CD28
R320 T1425 T1450 themeOf interferon gamma,produce

DLUT931

Id Subject Object Predicate Lexical cue
T1495 137-144 Gene_expression denotes produce
T1471 195-199 Protein denotes CD28
T1470 164-180 Protein denotes interferon gamma
T1469 59-62 Protein denotes CD4
T1465 4-8 Protein denotes CD28
R335 T1470 T1495 themeOf interferon gamma,produce
R336 T1471 T1495 themeOf CD28,produce

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1906 195-213 Positive_regulation denotes CD28 costimulation
T1903 64-123 Entity denotes T cells from patients with active rheumatoid arthritis (RA)
T1893 4-8 Protein denotes CD28
T1891 187-190 Protein denotes CD3
T1886 164-174 Protein denotes interferon
T1885 195-199 Protein denotes CD28
T1868 120-122 Protein denotes RA
T1866 59-62 Protein denotes CD4
R619 T1885 T1906 themeOf CD28,CD28 costimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1625 221-229 NN denotes presence
T1624 217-220 DT denotes the
T1623 214-216 IN denotes in
T1622 200-213 NN denotes costimulation
T1621 195-199 NNP denotes CD28
T1620 191-194 CC denotes and
T1619 187-190 NNP denotes CD3
T1618 181-186 IN denotes after
T1617 175-180 NN denotes gamma
T1616 164-174 NN denotes interferon
T1615 161-163 IN denotes of
T1614 153-160 NNS denotes amounts
T1613 145-152 JJR denotes greater
T1612 137-144 VB denotes produce
T1611 134-136 TO denotes to
T1610 129-133 JJ denotes able
T1609 124-128 VBD denotes were
T1608 122-123 -RRB- denotes )
T1607 120-122 NNP denotes RA
T1606 119-120 -LRB- denotes (
T1605 109-118 NNS denotes arthritis
T1604 98-108 JJ denotes rheumatoid
T1603 91-97 JJ denotes active
T1602 86-90 IN denotes with
T1601 77-85 NNS denotes patients
T1600 72-76 IN denotes from
T1586 0-3 DT denotes the
T1587 4-8 NNP denotes CD28
T1588 9-18 VBG denotes signaling
T1589 19-26 NN denotes pathway
T1590 26-27 . denotes .
T1591 28-30 PRP denotes We
T1592 31-36 VBD denotes found
T1593 37-41 IN denotes that
T1594 42-52 JJ denotes peripheral
T1595 53-58 NN denotes blood
T1596 59-62 NNP denotes CD4
T1597 62-63 NNP denotes +
T1598 64-65 NNP denotes T
T1599 66-71 NNS denotes cells
R373 T1600 T1599 prep from,cells
R374 T1601 T1600 pobj patients,from
R375 T1602 T1601 prep with,patients
R376 T1603 T1605 amod active,arthritis
R377 T1604 T1605 amod rheumatoid,arthritis
R378 T1605 T1602 pobj arthritis,with
R379 T1606 T1605 punct (,arthritis
R380 T1607 T1605 appos RA,arthritis
R381 T1608 T1605 punct ),arthritis
R382 T1609 T1592 ccomp were,found
R383 T1610 T1609 acomp able,were
R384 T1611 T1612 aux to,produce
R385 T1612 T1610 xcomp produce,able
R386 T1613 T1614 amod greater,amounts
R387 T1614 T1612 dobj amounts,produce
R388 T1615 T1614 prep of,amounts
R389 T1616 T1615 pobj interferon,of
R390 T1617 T1614 acl gamma,amounts
R391 T1618 T1617 prep after,gamma
R392 T1619 T1618 pobj CD3,after
R393 T1620 T1619 cc and,CD3
R394 T1621 T1622 compound CD28,costimulation
R395 T1622 T1619 conj costimulation,CD3
R396 T1623 T1622 prep in,costimulation
R397 T1624 T1625 det the,presence
R398 T1625 T1623 pobj presence,in
R697 T1586 T1587 det the,CD28
R700 T1589 T1588 dobj pathway,signaling
R702 T1591 T1592 nsubj We,found
R703 T1592 T1592 ROOT found,found
R704 T1593 T1609 mark that,were
R705 T1594 T1595 amod peripheral,blood
R706 T1595 T1599 compound blood,cells
R707 T1596 T1599 compound CD4,cells
R708 T1597 T1599 compound +,cells
R709 T1598 T1599 compound T,cells
R710 T1599 T1609 nsubj cells,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1095 4-8 Protein denotes CD28
T1097 59-63 Protein denotes CD4+
T1098 164-180 Protein denotes interferon gamma
T1099 187-190 Protein denotes CD3
T1100 195-199 Protein denotes CD28
T1103 137-144 Gene_expression denotes produce
T1104 137-144 Gene_expression denotes produce
T1105 153-160 Gene_expression denotes amounts
R655 T1098 T1105 themeOf interferon gamma,amounts
R656 T1099 T1103 themeOf CD3,produce
R657 T1100 T1104 themeOf CD28,produce

testone

Id Subject Object Predicate Lexical cue
T65 137-144 Gene_expression denotes produce
T40 195-199 Protein denotes CD28
T39 164-180 Protein denotes interferon gamma
T38 59-62 Protein denotes CD4
T37 4-8 Protein denotes CD28
R2 T39 T65 themeOf interferon gamma,produce
R3 T40 T65 themeOf CD28,produce