PMC:1064873 / 236-405
Annnotations
LappsTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T420 | 66-71 | OCCURRENCE | denotes | found |
| T417 | 24-34 | OCCURRENCE | denotes | inhibiting |
| T390 | 63-65 | stop | denotes | We |
| T389 | 21-23 | country_code | denotes | by |
| T144 | 164-168 | JJ | denotes | able |
| T143 | 159-163 | VBD | denotes | were |
| T142 | 157-158 | ) | denotes | ) |
| T141 | 155-157 | NNP | denotes | RA |
| T140 | 154-155 | ( | denotes | ( |
| T139 | 144-153 | NN | denotes | arthritis |
| T138 | 133-143 | NN | denotes | rheumatoid |
| T137 | 126-132 | JJ | denotes | active |
| T136 | 121-125 | IN | denotes | with |
| T135 | 112-120 | NNS | denotes | patients |
| T134 | 107-111 | IN | denotes | from |
| T133 | 101-106 | NNS | denotes | cells |
| T132 | 99-100 | NN | denotes | T |
| T131 | 97-98 | NN | denotes | + |
| T130 | 96-97 | CD | denotes | 4 |
| T129 | 94-96 | NNP | denotes | CD |
| T128 | 88-93 | NN | denotes | blood |
| T127 | 77-87 | JJ | denotes | peripheral |
| T126 | 72-76 | IN | denotes | that |
| T125 | 66-71 | VBD | denotes | found |
| T124 | 63-65 | PRP | denotes | We |
| T123 | 61-62 | . | denotes | . |
| T122 | 54-61 | NN | denotes | pathway |
| T121 | 44-53 | VBG | denotes | signaling |
| T120 | 41-43 | CD | denotes | 28 |
| T119 | 39-41 | NNP | denotes | CD |
| T118 | 35-38 | DT | denotes | the |
| T117 | 24-34 | VBG | denotes | inhibiting |
| T116 | 21-23 | IN | denotes | by |
| T115 | 12-20 | NN | denotes | response |
| T114 | 3-11 | NN | denotes | cytokine |
biosemtest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T879 | 39-43 | UMLS/C1332709 | denotes | CD28 |
| T844 | 39-43 | UMLS/C1426202 | denotes | CD28 |
| T828 | 112-120 | UMLS/C1705908 | denotes | patients |
| T808 | 66-71 | UMLS/C0243095 | denotes | found |
| T716 | 126-132 | UMLS/C1553875 | denotes | active |
| T701 | 99-106 | UMLS/C0039194 | denotes | T cells |
| T690 | 77-93 | UMLS/C0229664 | denotes | peripheral blood |
| T688 | 39-43 | UMLS/C0075747 | denotes | CD28 |
| T632 | 164-168 | UMLS/C0085732 | denotes | able |
| T631 | 133-153 | UMLS/C0003873 | denotes | rheumatoid arthritis |
| T596 | 3-11 | UMLS/C1524094 | denotes | cytokine |
| T583 | 112-120 | UMLS/C0030705 | denotes | patients |
| T572 | 164-168 | UMLS/C1299581 | denotes | able |
| T563 | 112-120 | UMLS/C1578479 | denotes | patients |
| T556 | 112-120 | UMLS/C1578483 | denotes | patients |
| T552 | 112-120 | UMLS/C1578480 | denotes | patients |
| T548 | 112-120 | UMLS/C1578481 | denotes | patients |
| T543 | 112-120 | UMLS/C1578486 | denotes | patients |
| T538 | 112-120 | UMLS/C1578484 | denotes | patients |
| T533 | 112-120 | UMLS/C1578485 | denotes | patients |
| T524 | 126-132 | UMLS/C1561511 | denotes | active |
| T523 | 126-132 | UMLS/C1561512 | denotes | active |
| T522 | 126-132 | UMLS/C1561513 | denotes | active |
| T519 | 12-20 | UMLS/C1704632 | denotes | response |
| T517 | 44-61 | UMLS/C0086982 | denotes | signaling pathway |
| T512 | 126-132 | UMLS/C0205177 | denotes | active |
| T462 | 126-132 | UMLS/C1561510 | denotes | active |
| T460 | 126-132 | UMLS/C1561509 | denotes | active |
| T459 | 126-132 | UMLS/C1561508 | denotes | active |
| T458 | 126-132 | UMLS/C1561507 | denotes | active |
| T443 | 126-132 | UMLS/C1547419 | denotes | active |
| T442 | 3-11 | UMLS/C0079189 | denotes | cytokine |
| T441 | 12-20 | UMLS/C0871261 | denotes | response |
| T768 | 66-71 | UMLS/C0037088 | denotes | found |
| T765 | 12-20 | UMLS/C1706817 | denotes | response |
| T760 | 44-61 | UMLS/C0037080 | denotes | signaling pathway |
| T750 | 112-120 | UMLS/C1550655 | denotes | patients |
| T731 | 24-34 | UMLS/C0021469 | denotes | inhibiting |
| T505 | 126-132 | UMLS/C2347179 | denotes | active |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1212 | 164-168 | JJ | denotes | able |
| T1211 | 159-163 | VB | denotes | were |
| T1210 | 157-158 | -RRB- | denotes | ) |
| T1209 | 155-157 | NN | denotes | RA |
| T1208 | 154-155 | -LRB- | denotes | ( |
| T1207 | 144-153 | NN | denotes | arthritis |
| T1206 | 133-143 | JJ | denotes | rheumatoid |
| T1205 | 126-132 | JJ | denotes | active |
| T1204 | 121-125 | IN | denotes | with |
| T1203 | 112-120 | NN | denotes | patients |
| T1202 | 107-111 | IN | denotes | from |
| T1201 | 101-106 | NN | denotes | cells |
| T1200 | 99-100 | NN | denotes | T |
| T1199 | 94-98 | JJ | denotes | CD4+ |
| T1198 | 88-93 | NN | denotes | blood |
| T1197 | 77-87 | JJ | denotes | peripheral |
| T1196 | 72-76 | IN | denotes | that |
| T1195 | 66-71 | VB | denotes | found |
| T1194 | 63-65 | PRP | denotes | We |
| T1193 | 54-61 | NN | denotes | pathway |
| T1192 | 44-53 | NN | denotes | signaling |
| T1191 | 39-43 | NN | denotes | CD28 |
| T1190 | 35-38 | DT | denotes | the |
| T1189 | 24-34 | VB | denotes | inhibiting |
| T1188 | 21-23 | IN | denotes | by |
| T1187 | 12-20 | NN | denotes | response |
| T1186 | 3-11 | NN | denotes | cytokine |
| R82 | T1187 | T1186 | arg1Of | response,cytokine |
| R83 | T1189 | T1188 | arg2Of | inhibiting,by |
| R84 | T1193 | T1189 | arg2Of | pathway,inhibiting |
| R85 | T1193 | T1190 | arg1Of | pathway,the |
| R86 | T1193 | T1191 | arg1Of | pathway,CD28 |
| R87 | T1193 | T1192 | arg1Of | pathway,signaling |
| R88 | T1194 | T1195 | arg1Of | We,found |
| R89 | T1201 | T1197 | arg1Of | cells,peripheral |
| R90 | T1201 | T1198 | arg1Of | cells,blood |
| R91 | T1201 | T1199 | arg1Of | cells,CD4+ |
| R92 | T1201 | T1200 | arg1Of | cells,T |
| R93 | T1201 | T1202 | arg1Of | cells,from |
| R94 | T1201 | T1211 | arg1Of | cells,were |
| R95 | T1201 | T1212 | arg1Of | cells,able |
| R97 | T1203 | T1202 | arg2Of | patients,from |
| R98 | T1203 | T1204 | arg1Of | patients,with |
| R99 | T1207 | T1204 | arg2Of | arthritis,with |
| R100 | T1207 | T1205 | arg1Of | arthritis,active |
| R101 | T1207 | T1206 | arg1Of | arthritis,rheumatoid |
| R102 | T1207 | T1208 | arg1Of | arthritis,( |
| R103 | T1209 | T1208 | arg2Of | RA,( |
| R104 | T1210 | T1208 | arg3Of | ),( |
| R105 | T1211 | T1195 | arg2Of | were,found |
| R106 | T1211 | T1196 | arg1Of | were,that |
| R107 | T1212 | T1211 | arg2Of | able,were |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T972 | 39-43 | Protein | denotes | CD28 |
| T973 | 94-97 | Protein | denotes | CD4 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1049 | 39-43 | http://www.uniprot.org/uniprot/P10747 | denotes | CD28 |
| T1041 | 94-97 | http://www.uniprot.org/uniprot/P01730 | denotes | CD4 |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T434 | 88-93 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T906 | 44-61 | http://purl.obolibrary.org/obo/GO_0007165 | denotes | signaling pathway |
| T905 | 3-20 | http://purl.obolibrary.org/obo/GO_0034097 | denotes | cytokine response |
| T899 | 44-53 | http://purl.obolibrary.org/obo/GO_0023052 | denotes | signaling |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1015 | 101-106 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
ICD10
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1026 | 133-153 | http://purl.bioontology.org/ontology/ICD10/M06.9 | denotes | rheumatoid arthritis |
| T1028 | 144-153 | http://purl.bioontology.org/ontology/ICD10/M13.9 | denotes | arthritis |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1127 | 39-43 | Protein | denotes | CD28 |
| T1128 | 94-97 | Protein | denotes | CD4 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1928 | 94-97 | Protein | denotes | CD4 |
| T1924 | 39-43 | Protein | denotes | CD28 |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1424 | 94-97 | Protein | denotes | CD4 |
| T1420 | 39-43 | Protein | denotes | CD28 |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1469 | 94-97 | Protein | denotes | CD4 |
| T1465 | 39-43 | Protein | denotes | CD28 |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1903 | 99-158 | Entity | denotes | T cells from patients with active rheumatoid arthritis (RA) |
| T1893 | 39-43 | Protein | denotes | CD28 |
| T1868 | 155-157 | Protein | denotes | RA |
| T1866 | 94-97 | Protein | denotes | CD4 |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1610 | 164-168 | JJ | denotes | able |
| T1609 | 159-163 | VBD | denotes | were |
| T1608 | 157-158 | -RRB- | denotes | ) |
| T1607 | 155-157 | NNP | denotes | RA |
| T1606 | 154-155 | -LRB- | denotes | ( |
| T1605 | 144-153 | NNS | denotes | arthritis |
| T1604 | 133-143 | JJ | denotes | rheumatoid |
| T1603 | 126-132 | JJ | denotes | active |
| T1602 | 121-125 | IN | denotes | with |
| T1601 | 112-120 | NNS | denotes | patients |
| T1600 | 107-111 | IN | denotes | from |
| T1582 | 3-11 | NN | denotes | cytokine |
| T1583 | 12-20 | NN | denotes | response |
| T1584 | 21-23 | IN | denotes | by |
| T1585 | 24-34 | VBG | denotes | inhibiting |
| T1586 | 35-38 | DT | denotes | the |
| T1587 | 39-43 | NNP | denotes | CD28 |
| T1588 | 44-53 | VBG | denotes | signaling |
| T1589 | 54-61 | NN | denotes | pathway |
| T1590 | 61-62 | . | denotes | . |
| T1591 | 63-65 | PRP | denotes | We |
| T1592 | 66-71 | VBD | denotes | found |
| T1593 | 72-76 | IN | denotes | that |
| T1594 | 77-87 | JJ | denotes | peripheral |
| T1595 | 88-93 | NN | denotes | blood |
| T1596 | 94-97 | NNP | denotes | CD4 |
| T1597 | 97-98 | NNP | denotes | + |
| T1598 | 99-100 | NNP | denotes | T |
| T1599 | 101-106 | NNS | denotes | cells |
| R373 | T1600 | T1599 | prep | from,cells |
| R374 | T1601 | T1600 | pobj | patients,from |
| R375 | T1602 | T1601 | prep | with,patients |
| R376 | T1603 | T1605 | amod | active,arthritis |
| R377 | T1604 | T1605 | amod | rheumatoid,arthritis |
| R378 | T1605 | T1602 | pobj | arthritis,with |
| R379 | T1606 | T1605 | punct | (,arthritis |
| R380 | T1607 | T1605 | appos | RA,arthritis |
| R381 | T1608 | T1605 | punct | ),arthritis |
| R382 | T1609 | T1592 | ccomp | were,found |
| R383 | T1610 | T1609 | acomp | able,were |
| R693 | T1582 | T1583 | compound | cytokine,response |
| R696 | T1585 | T1584 | pcomp | inhibiting,by |
| R697 | T1586 | T1587 | det | the,CD28 |
| R698 | T1587 | T1585 | dobj | CD28,inhibiting |
| R699 | T1588 | T1585 | conj | signaling,inhibiting |
| R700 | T1589 | T1588 | dobj | pathway,signaling |
| R702 | T1591 | T1592 | nsubj | We,found |
| R703 | T1592 | T1592 | ROOT | found,found |
| R704 | T1593 | T1609 | mark | that,were |
| R705 | T1594 | T1595 | amod | peripheral,blood |
| R706 | T1595 | T1599 | compound | blood,cells |
| R707 | T1596 | T1599 | compound | CD4,cells |
| R708 | T1597 | T1599 | compound | +,cells |
| R709 | T1598 | T1599 | compound | T,cells |
| R710 | T1599 | T1609 | nsubj | cells,were |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1095 | 39-43 | Protein | denotes | CD28 |
| T1096 | 24-34 | Negative_regulation | denotes | inhibiting |
| T1097 | 94-98 | Protein | denotes | CD4+ |
| R654 | T1095 | T1096 | themeOf | CD28,inhibiting |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T38 | 94-97 | Protein | denotes | CD4 |
| T37 | 39-43 | Protein | denotes | CD28 |