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PMC:1064873 / 23433-24273 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T22060 780-807 Protein denotes T-cell-associated antigen 4
T22059 650-654 Protein denotes CD28
T22058 502-523 Protein denotes MHC class II antigens
T22057 482-486 Protein denotes CD86
T22056 473-477 Protein denotes CD80
T22055 454-458 Protein denotes CD28
T22054 403-407 Protein denotes CD28
T22053 372-388 Protein denotes antigen receptor
T22052 322-326 Protein denotes CD4+
T22051 226-239 Protein denotes Th1 cytokines
T22050 90-94 Protein denotes CD4+
T22049 29-32 Protein denotes Th1
T22048 0-4 Protein denotes CD4+

2_test

Id Subject Object Predicate Lexical cue
15535835-11259725-4156903 75-77 11259725 denotes 22
15535835-8624620-4156904 622-624 8624620 denotes 18
15535835-8546719-4156904 622-624 8546719 denotes 18
15535835-10529123-4156904 622-624 10529123 denotes 18
15535835-14614165-4156905 836-838 14614165 denotes 23

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24626 838-839 -RRB- denotes ]
T24625 836-838 CD denotes 23
T24624 835-836 -LRB- denotes [
T24623 826-834 NN denotes patients
T24622 823-825 NN denotes RA
T24621 820-822 IN denotes in
T24620 815-819 NN denotes -IgG
T24619 814-815 -RRB- denotes )
T24618 809-814 NN denotes CD152
T24617 808-809 -LRB- denotes (
T24616 806-807 CD denotes 4
T24615 798-805 NN denotes antigen
T24614 780-797 JJ denotes T-cell-associated
T24613 770-779 JJ denotes cytotoxic
T24612 762-769 NN denotes blocker
T24611 758-761 PRP-DOLLAR- denotes its
T24610 755-757 IN denotes of
T24609 746-754 NN denotes efficacy
T24608 737-745 JJ denotes clinical
T24607 733-736 DT denotes the
T24606 730-732 IN denotes by
T24605 723-729 VB denotes proven
T24604 718-722 VB denotes been
T24603 709-717 RB denotes recently
T24602 705-708 VB denotes has
T24601 697-704 NN denotes process
T24600 689-696 NN denotes disease
T24599 673-688 JJ denotes T-cell-mediated
T24598 669-672 DT denotes the
T24597 666-668 IN denotes in
T24596 655-665 NN denotes engagement
T24595 650-654 NN denotes CD28
T24594 647-649 IN denotes of
T24593 634-646 NN denotes significance
T24592 630-633 DT denotes The
T24591 627-628 -RRB- denotes ]
T24590 622-627 CD denotes 18-20
T24589 621-622 -LRB- denotes [
T24588 615-620 NN denotes cells
T24587 605-614 JJ denotes dendritic
T24586 601-604 CC denotes and
T24585 589-600 NN denotes macrophages
T24584 586-588 IN denotes as
T24583 581-585 JJ denotes such
T24582 575-580 NN denotes cells
T24581 556-574 JJ denotes antigen-presenting
T24580 553-555 IN denotes by
T24579 543-552 VB denotes expressed
T24578 529-542 RB denotes substantially
T24577 525-528 VB denotes are
T24576 523-524 -COMMA- denotes ,
T24575 515-523 NN denotes antigens
T24574 512-514 CD denotes II
T24573 506-511 NN denotes class
T24572 502-505 NN denotes MHC
T24571 497-501 IN denotes with
T24570 488-496 RB denotes together
T24569 486-487 -COMMA- denotes ,
T24568 482-486 NN denotes CD86
T24567 478-481 CC denotes and
T24566 473-477 NN denotes CD80
T24565 468-472 CC denotes both
T24564 466-467 -COMMA- denotes ,
T24563 459-466 NN denotes ligands
T24562 454-458 NN denotes CD28
T24561 450-453 DT denotes the
T24560 448-449 -COMMA- denotes ,
T24559 442-448 NN denotes lesion
T24558 439-441 NN denotes ST
T24557 435-438 DT denotes the
T24556 432-434 IN denotes In
T24555 417-430 NN denotes costimulation
T24554 403-416 JJ denotes CD28-mediated
T24553 399-402 CC denotes and
T24552 389-398 NN denotes occupancy
T24551 380-388 NN denotes receptor
T24550 372-379 NN denotes antigen
T24549 370-371 -COLON- denotes ;
T24548 361-370 VB denotes activated
T24547 358-360 VB denotes be
T24546 355-357 TO denotes to
T24545 347-354 NN denotes signals
T24544 343-346 CD denotes two
T24543 335-342 VB denotes require
T24542 329-334 NN denotes cells
T24541 327-328 NN denotes T
T24540 322-326 JJ denotes CD4+
T24539 309-320 NN denotes destruction
T24538 303-308 JJ denotes joint
T24537 299-302 DT denotes the
T24536 295-298 CC denotes and
T24535 282-294 NN denotes inflammation
T24534 274-281 JJ denotes chronic
T24533 270-273 DT denotes the
T24532 265-269 CC denotes both
T24531 262-264 TO denotes to
T24530 249-261 VB denotes contributing
T24529 241-248 RB denotes thereby
T24528 239-240 -COMMA- denotes ,
T24527 230-239 NN denotes cytokines
T24526 226-229 NN denotes Th1
T24525 222-225 CC denotes and
T24524 212-221 NN denotes molecules
T24523 204-211 NN denotes surface
T24522 199-203 NN denotes cell
T24521 196-198 IN denotes of
T24520 185-195 NN denotes expression
T24519 181-184 DT denotes the
T24518 173-180 IN denotes through
T24517 161-172 VB denotes osteoclasts
T24516 157-160 CC denotes and
T24515 155-156 -COMMA- denotes ,
T24514 150-155 NN denotes cells
T24513 148-149 NN denotes B
T24512 146-147 -COMMA- denotes ,
T24511 135-146 NN denotes fibroblasts
T24510 126-134 JJ denotes synovial
T24509 124-125 -COMMA- denotes ,
T24508 113-124 NN denotes macrophages
T24507 103-112 VB denotes stimulate
T24506 97-102 NN denotes cells
T24505 95-96 NN denotes T
T24504 90-94 JJ denotes CD4+
T24503 80-89 VB denotes Activated
T24502 77-78 -RRB- denotes ]
T24501 75-77 CD denotes 22
T24500 74-75 -LRB- denotes [
T24499 71-73 NN denotes RA
T24498 68-70 IN denotes in
T24497 59-67 NN denotes response
T24496 52-58 JJ denotes immune
T24495 38-51 JJ denotes cell-mediated
T24494 29-37 JJ denotes Th1-type
T24493 25-28 DT denotes the
T24492 13-24 VB denotes orchestrate
T24491 7-12 NN denotes cells
T24490 5-6 NN denotes T
T24489 0-4 JJ denotes CD4+
R11542 T24491 T24489 arg1Of cells,CD4+
R11543 T24491 T24490 arg1Of cells,T
R11544 T24491 T24492 arg1Of cells,orchestrate
R11545 T24497 T24492 arg2Of response,orchestrate
R11546 T24497 T24493 arg1Of response,the
R11547 T24497 T24494 arg1Of response,Th1-type
R11548 T24497 T24495 arg1Of response,cell-mediated
R11549 T24497 T24496 arg1Of response,immune
R11550 T24497 T24498 arg1Of response,in
R11551 T24499 T24498 arg2Of RA,in
R11552 T24499 T24500 arg1Of RA,[
R11553 T24501 T24500 arg2Of 22,[
R11554 T24502 T24500 arg3Of ],[
R11555 T24506 T24503 arg2Of cells,Activated
R11556 T24506 T24504 arg1Of cells,CD4+
R11557 T24506 T24505 arg1Of cells,T
R11558 T24506 T24507 arg1Of cells,stimulate
R11559 T24506 T24517 arg1Of cells,osteoclasts
R11560 T24506 T24530 arg1Of cells,contributing
R11561 T24507 T24516 arg1Of stimulate,and
R11562 T24508 T24509 arg1Of macrophages,","
R11563 T24509 T24512 arg1Of ",",","
R11564 T24511 T24509 arg2Of fibroblasts,","
R11565 T24511 T24510 arg1Of fibroblasts,synovial
R11566 T24512 T24507 arg2Of ",",stimulate
R11567 T24514 T24512 arg2Of cells,","
R11568 T24514 T24513 arg1Of cells,B
R11569 T24516 T24515 arg1Of and,","
R11570 T24517 T24516 arg2Of osteoclasts,and
R11571 T24517 T24518 arg1Of osteoclasts,through
R11572 T24517 T24528 arg1Of osteoclasts,","
R11573 T24520 T24518 arg2Of expression,through
R11574 T24520 T24519 arg1Of expression,the
R11575 T24520 T24521 arg1Of expression,of
R11576 T24524 T24522 arg1Of molecules,cell
R11577 T24524 T24523 arg1Of molecules,surface
R11578 T24524 T24525 arg1Of molecules,and
R11579 T24525 T24521 arg2Of and,of
R11580 T24527 T24525 arg2Of cytokines,and
R11581 T24527 T24526 arg1Of cytokines,Th1
R11582 T24530 T24517 arg2Of contributing,osteoclasts
R11583 T24530 T24529 arg1Of contributing,thereby
R11584 T24530 T24531 arg1Of contributing,to
R11585 T24535 T24533 arg1Of inflammation,the
R11586 T24535 T24534 arg1Of inflammation,chronic
R11587 T24535 T24536 arg1Of inflammation,and
R11588 T24536 T24531 arg2Of and,to
R11589 T24536 T24532 arg1Of and,both
R11590 T24539 T24536 arg2Of destruction,and
R11591 T24539 T24537 arg1Of destruction,the
R11592 T24539 T24538 arg1Of destruction,joint
R11593 T24542 T24540 arg1Of cells,CD4+
R11594 T24542 T24541 arg1Of cells,T
R11595 T24542 T24543 arg1Of cells,require
R11596 T24545 T24543 arg2Of signals,require
R11597 T24545 T24544 arg1Of signals,two
R11598 T24545 T24547 arg1Of signals,be
R11599 T24545 T24548 arg2Of signals,activated
R11600 T24548 T24543 arg3Of activated,require
R11601 T24548 T24546 arg1Of activated,to
R11602 T24548 T24547 arg2Of activated,be
R11603 T24548 T24549 arg1Of activated,;
R11604 T24552 T24550 arg1Of occupancy,antigen
R11605 T24552 T24551 arg1Of occupancy,receptor
R11606 T24552 T24553 arg1Of occupancy,and
R11607 T24553 T24548 arg3Of and,activated
R11608 T24555 T24553 arg2Of costimulation,and
R11609 T24555 T24554 arg1Of costimulation,CD28-mediated
R11610 T24559 T24556 arg2Of lesion,In
R11611 T24559 T24557 arg1Of lesion,the
R11612 T24559 T24558 arg1Of lesion,ST
R11613 T24563 T24561 arg1Of ligands,the
R11614 T24563 T24562 arg1Of ligands,CD28
R11615 T24563 T24564 arg1Of ligands,","
R11616 T24563 T24577 arg1Of ligands,are
R11617 T24563 T24579 arg2Of ligands,expressed
R11618 T24566 T24567 arg1Of CD80,and
R11619 T24567 T24564 arg2Of and,","
R11620 T24567 T24565 arg1Of and,both
R11621 T24568 T24567 arg2Of CD86,and
R11622 T24570 T24571 arg1Of together,with
R11623 T24575 T24571 arg2Of antigens,with
R11624 T24575 T24572 arg1Of antigens,MHC
R11625 T24575 T24573 arg1Of antigens,class
R11626 T24575 T24574 arg1Of antigens,II
R11627 T24579 T24556 arg1Of expressed,In
R11628 T24579 T24560 arg1Of expressed,","
R11629 T24579 T24569 arg1Of expressed,","
R11630 T24579 T24570 arg1Of expressed,together
R11631 T24579 T24576 arg1Of expressed,","
R11632 T24579 T24577 arg2Of expressed,are
R11633 T24579 T24578 arg1Of expressed,substantially
R11634 T24582 T24579 arg1Of cells,expressed
R11635 T24582 T24580 arg2Of cells,by
R11636 T24582 T24581 arg1Of cells,antigen-presenting
R11637 T24582 T24584 arg1Of cells,as
R11638 T24584 T24583 arg1Of as,such
R11639 T24585 T24586 arg1Of macrophages,and
R11640 T24586 T24584 arg2Of and,as
R11641 T24588 T24586 arg2Of cells,and
R11642 T24588 T24587 arg1Of cells,dendritic
R11643 T24588 T24589 arg1Of cells,[
R11644 T24590 T24589 arg2Of 18-20,[
R11645 T24591 T24589 arg3Of ],[
R11646 T24593 T24592 arg1Of significance,The
R11647 T24593 T24594 arg1Of significance,of
R11648 T24593 T24597 arg1Of significance,in
R11649 T24593 T24602 arg1Of significance,has
R11650 T24593 T24604 arg1Of significance,been
R11651 T24593 T24605 arg2Of significance,proven
R11652 T24596 T24594 arg2Of engagement,of
R11653 T24596 T24595 arg1Of engagement,CD28
R11654 T24601 T24597 arg2Of process,in
R11655 T24601 T24598 arg1Of process,the
R11656 T24601 T24599 arg1Of process,T-cell-mediated
R11657 T24601 T24600 arg1Of process,disease
R11658 T24605 T24602 arg2Of proven,has
R11659 T24605 T24603 arg1Of proven,recently
R11660 T24605 T24604 arg2Of proven,been
R11661 T24609 T24605 arg1Of efficacy,proven
R11662 T24609 T24606 arg2Of efficacy,by
R11663 T24609 T24607 arg1Of efficacy,the
R11664 T24609 T24608 arg1Of efficacy,clinical
R11665 T24609 T24610 arg1Of efficacy,of
R11666 T24609 T24621 arg1Of efficacy,in
R11667 T24614 T24612 arg1Of T-cell-associated,blocker
R11668 T24614 T24613 arg1Of T-cell-associated,cytotoxic
R11669 T24618 T24617 arg2Of CD152,(
R11670 T24619 T24617 arg3Of ),(
R11671 T24620 T24610 arg2Of -IgG,of
R11672 T24620 T24611 arg1Of -IgG,its
R11673 T24620 T24614 arg1Of -IgG,T-cell-associated
R11674 T24620 T24615 arg1Of -IgG,antigen
R11675 T24620 T24616 arg1Of -IgG,4
R11676 T24620 T24617 arg1Of -IgG,(
R11677 T24623 T24621 arg2Of patients,in
R11678 T24623 T24622 arg1Of patients,RA
R11679 T24623 T24624 arg1Of patients,[
R11680 T24625 T24624 arg2Of 23,[
R11681 T24626 T24624 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23347 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T23346 650-654 Protein denotes CD28
T23345 482-486 Protein denotes CD86
T23344 473-477 Protein denotes CD80
T23343 454-458 Protein denotes CD28
T23342 403-407 Protein denotes CD28
T23341 322-325 Protein denotes CD4
T23340 90-93 Protein denotes CD4
T23339 0-3 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T24271 482-486 http://www.uniprot.org/uniprot/P42081 denotes CD86
T24269 473-477 http://www.uniprot.org/uniprot/P33681 denotes CD80
T24264 650-654 http://www.uniprot.org/uniprot/P10747 denotes CD28
T24263 454-458 http://www.uniprot.org/uniprot/P10747 denotes CD28
T24262 403-407 http://www.uniprot.org/uniprot/P10747 denotes CD28
T24234 322-325 http://www.uniprot.org/uniprot/P01730 denotes CD4
T24233 90-93 http://www.uniprot.org/uniprot/P01730 denotes CD4
T24232 0-3 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-BP

Id Subject Object Predicate Lexical cue
T22874 673-688 http://purl.obolibrary.org/obo/GO_0001913 denotes T-cell-mediated
T22867 347-354 http://purl.obolibrary.org/obo/GO_0023052 denotes signals
T22865 282-294 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T22864 52-67 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T22863 38-58 http://purl.obolibrary.org/obo/GO_0001909 denotes cell-mediated immune
T22862 38-67 http://purl.obolibrary.org/obo/GO_0002443 denotes cell-mediated immune response
T22861 38-58 http://purl.obolibrary.org/obo/GO_0002228 denotes cell-mediated immune
T22860 38-58 http://purl.obolibrary.org/obo/GO_0019724 denotes cell-mediated immune
T22859 673-688 http://purl.obolibrary.org/obo/GO_0002456 denotes T-cell-mediated
T22858 38-58 http://purl.obolibrary.org/obo/GO_0002456 denotes cell-mediated immune
T22857 38-58 http://purl.obolibrary.org/obo/GO_0002449 denotes cell-mediated immune

GO-CC

Id Subject Object Predicate Lexical cue
T23690 782-797 http://purl.obolibrary.org/obo/GO_0009986 denotes cell-associated
T23689 199-211 http://purl.obolibrary.org/obo/GO_0009986 denotes cell surface
T23647 97-102 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T23646 7-12 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T23651 615-620 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T23650 575-580 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T23649 329-334 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T23648 150-155 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T23547 459-466 http://purl.obolibrary.org/obo/GO_0005488 denotes ligands

sentences

Id Subject Object Predicate Lexical cue
T22801 630-840 Sentence denotes The significance of CD28 engagement in the T-cell-mediated disease process has recently been proven by the clinical efficacy of its blocker cytotoxic T-cell-associated antigen 4 (CD152)-IgG in RA patients [23].
T22800 432-629 Sentence denotes In the ST lesion, the CD28 ligands, both CD80 and CD86, together with MHC class II antigens, are substantially expressed by antigen-presenting cells such as macrophages and dendritic cells [18-20].
T22799 322-431 Sentence denotes CD4+ T cells require two signals to be activated; antigen receptor occupancy and CD28-mediated costimulation.
T22798 80-321 Sentence denotes Activated CD4+ T cells stimulate macrophages, synovial fibroblasts, B cells, and osteoclasts through the expression of cell surface molecules and Th1 cytokines, thereby contributing to both the chronic inflammation and the joint destruction.
T22797 0-79 Sentence denotes CD4+ T cells orchestrate the Th1-type cell-mediated immune response in RA [22].
T140 0-79 Sentence denotes CD4+ T cells orchestrate the Th1-type cell-mediated immune response in RA [22].
T141 80-321 Sentence denotes Activated CD4+ T cells stimulate macrophages, synovial fibroblasts, B cells, and osteoclasts through the expression of cell surface molecules and Th1 cytokines, thereby contributing to both the chronic inflammation and the joint destruction.
T142 322-431 Sentence denotes CD4+ T cells require two signals to be activated; antigen receptor occupancy and CD28-mediated costimulation.
T143 432-629 Sentence denotes In the ST lesion, the CD28 ligands, both CD80 and CD86, together with MHC class II antigens, are substantially expressed by antigen-presenting cells such as macrophages and dendritic cells [18-20].
T144 630-840 Sentence denotes The significance of CD28 engagement in the T-cell-mediated disease process has recently been proven by the clinical efficacy of its blocker cytotoxic T-cell-associated antigen 4 (CD152)-IgG in RA patients [23].

simple1

Id Subject Object Predicate Lexical cue
T24289 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T24288 650-654 Protein denotes CD28
T24287 482-486 Protein denotes CD86
T24286 473-477 Protein denotes CD80
T24285 454-458 Protein denotes CD28
T24284 403-407 Protein denotes CD28
T24283 322-325 Protein denotes CD4
T24282 90-93 Protein denotes CD4
T24281 0-3 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T30324 655-665 Binding denotes engagement
T30323 543-552 Gene_expression denotes expressed
T30123 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T30122 650-654 Protein denotes CD28
T30121 482-486 Protein denotes CD86
T30120 473-477 Protein denotes CD80
T30118 403-407 Protein denotes CD28
T30117 322-325 Protein denotes CD4
T30116 90-93 Protein denotes CD4
T30115 0-3 Protein denotes CD4
T30119 454-458 Protein denotes CD28
R16070 T30120 T30323 themeOf CD80,expressed
R16071 T30121 T30323 themeOf CD86,expressed
R16072 T30122 T30324 themeOf CD28,engagement

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T26680 655-665 Binding denotes engagement
T26679 543-552 Gene_expression denotes expressed
T26477 482-486 Protein denotes CD86
T26476 473-477 Protein denotes CD80
T26475 454-458 Protein denotes CD28
T26474 403-407 Protein denotes CD28
T26473 322-325 Protein denotes CD4
T26472 90-93 Protein denotes CD4
T26471 0-3 Protein denotes CD4
T26479 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T26478 650-654 Protein denotes CD28
R13449 T26476 T26679 themeOf CD80,expressed
R13450 T26478 T26680 themeOf CD28,engagement

DLUT931

Id Subject Object Predicate Lexical cue
T28774 655-665 Binding denotes engagement
T28773 543-552 Gene_expression denotes expressed
T28563 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T28562 650-654 Protein denotes CD28
T28561 482-486 Protein denotes CD86
T28560 473-477 Protein denotes CD80
T28559 454-458 Protein denotes CD28
T28558 403-407 Protein denotes CD28
T28557 322-325 Protein denotes CD4
T28556 90-93 Protein denotes CD4
T28555 0-3 Protein denotes CD4
R15351 T28559 T28773 themeOf CD28,expressed
R15355 T28562 T28774 themeOf CD28,engagement
R15353 T28560 T28773 themeOf CD80,expressed
R15354 T28561 T28773 themeOf CD86,expressed

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T30041 403-430 Regulation denotes CD28-mediated costimulation
T30017 758-839 Protein denotes its blocker cytotoxic T-cell-associated antigen 4 (CD152)-IgG in RA patients [23]
T30001 758-839 Entity denotes its blocker cytotoxic T-cell-associated antigen 4 (CD152)-IgG in RA patients [23]
T29987 322-334 Entity denotes CD4+ T cells
T29982 71-78 Protein denotes RA [22]
T29980 473-477 Protein denotes CD80
T29966 564-600 Entity denotes presenting cells such as macrophages
T29964 161-172 Entity denotes osteoclasts
T29939 502-514 Protein denotes MHC class II
T29923 502-523 Entity denotes MHC class II antigens
T29905 556-563 Entity denotes antigen
T29808 450-466 Entity denotes the CD28 ligands
T29787 372-388 Protein denotes antigen receptor
T29785 113-124 Entity denotes macrophages
T29711 212-221 Entity denotes molecules
T29706 482-486 Protein denotes CD86
T29887 0-12 Entity denotes CD4+ T cells
T29683 605-628 Entity denotes dendritic cells [18-20]
T29749 196-211 Entity denotes of cell surface
T29739 647-654 Protein denotes of CD28
T29713 673-688 Entity denotes T-cell-mediated
T29783 435-467 Protein denotes the ST lesion, the CD28 ligands,
T29780 126-146 Entity denotes synovial fibroblasts
T29756 226-240 Protein denotes Th1 cytokines,
T29825 80-102 Entity denotes Activated CD4+ T cells
T29823 575-588 Entity denotes cells such as
T29860 403-416 Protein denotes CD28-mediated
T29854 372-379 Entity denotes antigen
T29850 823-825 Protein denotes RA
T29883 148-155 Entity denotes B cells
T29870 454-458 Protein denotes CD28
R15994 T29860 T30041 causeOf CD28-mediated,CD28-mediated costimulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T26945 839-840 . denotes .
T26944 838-839 NNP denotes ]
T26943 836-838 CD denotes 23
T26942 835-836 NNP denotes [
T26941 826-834 NNS denotes patients
T26940 823-825 NNP denotes RA
T26939 820-822 IN denotes in
T26938 816-819 NNP denotes IgG
T26937 815-816 : denotes -
T26936 814-815 -RRB- denotes )
T26935 809-814 NN denotes CD152
T26934 808-809 -LRB- denotes (
T26933 806-807 CD denotes 4
T26932 798-805 NN denotes antigen
T26931 780-797 JJ denotes T-cell-associated
T26930 770-779 JJ denotes cytotoxic
T26929 762-769 NN denotes blocker
T26928 758-761 PRP$ denotes its
T26927 755-757 IN denotes of
T26926 746-754 NN denotes efficacy
T26925 737-745 JJ denotes clinical
T26924 733-736 DT denotes the
T26923 730-732 IN denotes by
T26922 723-729 VBN denotes proven
T26921 718-722 VBN denotes been
T26920 709-717 RB denotes recently
T26919 705-708 VBZ denotes has
T26918 697-704 NN denotes process
T26917 689-696 NN denotes disease
T26916 673-688 JJ denotes T-cell-mediated
T26915 669-672 DT denotes the
T26914 666-668 IN denotes in
T26913 655-665 NN denotes engagement
T26912 650-654 CD denotes CD28
T26911 647-649 IN denotes of
T26910 634-646 NN denotes significance
T26909 630-633 DT denotes The
T26908 628-629 . denotes .
T26907 627-628 NNP denotes ]
T26906 622-627 CD denotes 18-20
T26905 621-622 NNP denotes [
T26904 615-620 NNS denotes cells
T26903 605-614 JJ denotes dendritic
T26902 601-604 CC denotes and
T26901 589-600 NNS denotes macrophages
T26900 586-588 IN denotes as
T26899 581-585 JJ denotes such
T26898 575-580 NNS denotes cells
T26897 556-574 JJ denotes antigen-presenting
T26896 553-555 IN denotes by
T26895 543-552 VBN denotes expressed
T26894 529-542 RB denotes substantially
T26893 525-528 VBP denotes are
T26892 523-524 , denotes ,
T26891 515-523 NNS denotes antigens
T26890 512-514 NNP denotes II
T26889 506-511 NN denotes class
T26888 502-505 NNP denotes MHC
T26887 497-501 IN denotes with
T26886 488-496 RB denotes together
T26885 486-487 , denotes ,
T26884 482-486 NNP denotes CD86
T26883 478-481 CC denotes and
T26882 473-477 NNP denotes CD80
T26881 468-472 DT denotes both
T26880 466-467 , denotes ,
T26879 459-466 NNS denotes ligands
T26878 454-458 NNP denotes CD28
T26877 450-453 DT denotes the
T26876 448-449 , denotes ,
T26875 442-448 NN denotes lesion
T26874 439-441 NNP denotes ST
T26873 435-438 DT denotes the
T26872 432-434 IN denotes In
T26871 430-431 . denotes .
T26870 417-430 NN denotes costimulation
T26869 403-416 JJ denotes CD28-mediated
T26868 399-402 CC denotes and
T26867 389-398 NN denotes occupancy
T26866 380-388 NN denotes receptor
T26865 372-379 NN denotes antigen
T26864 370-371 : denotes ;
T26863 361-370 VBN denotes activated
T26862 358-360 VB denotes be
T26861 355-357 TO denotes to
T26860 347-354 NNS denotes signals
T26859 343-346 CD denotes two
T26858 335-342 VBP denotes require
T26857 329-334 NNS denotes cells
T26856 327-328 NNP denotes T
T26855 325-326 CD denotes +
T26854 322-325 CD denotes CD4
T26853 320-321 . denotes .
T26852 309-320 NN denotes destruction
T26851 303-308 JJ denotes joint
T26850 299-302 DT denotes the
T26849 295-298 CC denotes and
T26848 282-294 NN denotes inflammation
T26847 274-281 NN denotes chronic
T26846 270-273 DT denotes the
T26845 265-269 DT denotes both
T26844 262-264 TO denotes to
T26843 249-261 VBG denotes contributing
T26842 241-248 RB denotes thereby
T26841 239-240 , denotes ,
T26840 230-239 NNS denotes cytokines
T26839 226-229 JJ denotes Th1
T26838 222-225 CC denotes and
T26837 212-221 NNS denotes molecules
T26836 204-211 NN denotes surface
T26835 199-203 NN denotes cell
T26834 196-198 IN denotes of
T26833 185-195 NN denotes expression
T26832 181-184 DT denotes the
T26831 173-180 IN denotes through
T26830 161-172 NNS denotes osteoclasts
T26829 157-160 CC denotes and
T26828 155-156 , denotes ,
T26827 150-155 NNS denotes cells
T26826 148-149 NNP denotes B
T26825 146-147 , denotes ,
T26824 135-146 NNS denotes fibroblasts
T26823 126-134 JJ denotes synovial
T26822 124-125 , denotes ,
T26821 113-124 NNS denotes macrophages
T26820 103-112 VBP denotes stimulate
T26819 97-102 NNS denotes cells
T26818 95-96 NNP denotes T
T26817 93-94 CD denotes +
T26816 90-93 NNP denotes CD4
T26815 80-89 VBN denotes Activated
T26814 78-79 . denotes .
T26813 77-78 NNP denotes ]
T26812 75-77 CD denotes 22
T26811 74-75 NNP denotes [
T26810 71-73 NNP denotes RA
T26809 68-70 IN denotes in
T26808 59-67 NN denotes response
T26807 52-58 JJ denotes immune
T26806 38-51 JJ denotes cell-mediated
T26805 29-37 JJ denotes Th1-type
T26804 25-28 DT denotes the
T26803 13-24 VBP denotes orchestrate
T26802 7-12 NNS denotes cells
T26801 5-6 NNP denotes T
T26800 3-4 CD denotes +
T26799 0-3 CD denotes CD4
R13597 T26799 T26803 nsubj CD4,orchestrate
R13599 T26800 T26802 nummod +,cells
R13601 T26801 T26802 compound T,cells
R13603 T26802 T26803 nsubj cells,orchestrate
R13605 T26803 T26803 ROOT orchestrate,orchestrate
R13606 T26804 T26808 det the,response
R13608 T26805 T26808 amod Th1-type,response
R13610 T26806 T26808 amod cell-mediated,response
R13611 T26807 T26808 amod immune,response
R13612 T26808 T26803 dobj response,orchestrate
R13613 T26809 T26808 prep in,response
R13614 T26810 T26811 compound RA,[
R13615 T26811 T26809 pobj [,in
R13616 T26877 T26879 det the,ligands
R13617 T26878 T26879 compound CD28,ligands
R13618 T26879 T26895 nsubjpass ligands,expressed
R13619 T26880 T26879 punct ",",ligands
R13620 T26812 T26813 nummod 22,]
R13621 T26881 T26882 det both,CD80
R13622 T26882 T26879 conj CD80,ligands
R13623 T26883 T26882 cc and,CD80
R13624 T26813 T26811 appos ],[
R13625 T26884 T26882 conj CD86,CD80
R13626 T26885 T26879 punct ",",ligands
R13627 T26814 T26803 punct .,orchestrate
R13628 T26815 T26819 amod Activated,cells
R13629 T26886 T26887 advmod together,with
R13630 T26816 T26819 compound CD4,cells
R13631 T26887 T26879 prep with,ligands
R13632 T26817 T26819 nummod +,cells
R13633 T26888 T26891 compound MHC,antigens
R13634 T26889 T26891 compound class,antigens
R13635 T26890 T26891 compound II,antigens
R13636 T26818 T26819 compound T,cells
R13637 T26891 T26887 pobj antigens,with
R13638 T26892 T26895 punct ",",expressed
R13639 T26893 T26895 auxpass are,expressed
R13640 T26819 T26820 nsubj cells,stimulate
R13641 T26894 T26895 advmod substantially,expressed
R13642 T26895 T26895 ROOT expressed,expressed
R13643 T26820 T26820 ROOT stimulate,stimulate
R13644 T26821 T26820 dobj macrophages,stimulate
R13645 T26896 T26895 agent by,expressed
R13646 T26822 T26821 punct ",",macrophages
R13647 T26897 T26898 amod antigen-presenting,cells
R13648 T26898 T26896 pobj cells,by
R13649 T26899 T26900 amod such,as
R13650 T26823 T26824 amod synovial,fibroblasts
R13651 T26900 T26898 prep as,cells
R13652 T26901 T26900 pobj macrophages,as
R13653 T26824 T26821 conj fibroblasts,macrophages
R13654 T26902 T26901 cc and,macrophages
R13655 T26903 T26904 amod dendritic,cells
R13656 T26904 T26901 conj cells,macrophages
R13657 T26905 T26907 nmod [,]
R13658 T26825 T26824 punct ",",fibroblasts
R13659 T26906 T26907 nummod 18-20,]
R13660 T26907 T26901 conj ],macrophages
R13661 T26908 T26895 punct .,expressed
R13662 T26826 T26827 compound B,cells
R13663 T26909 T26910 det The,significance
R13664 T26910 T26922 nsubjpass significance,proven
R13665 T26911 T26910 prep of,significance
R13666 T26827 T26824 conj cells,fibroblasts
R13667 T26912 T26913 nummod CD28,engagement
R13668 T26913 T26911 pobj engagement,of
R13669 T26914 T26913 prep in,engagement
R13670 T26915 T26918 det the,process
R13671 T26916 T26918 amod T-cell-mediated,process
R13672 T26917 T26918 compound disease,process
R13673 T26828 T26827 punct ",",cells
R13674 T26918 T26914 pobj process,in
R13675 T26919 T26922 aux has,proven
R13676 T26920 T26922 advmod recently,proven
R13677 T26921 T26922 auxpass been,proven
R13678 T26829 T26827 cc and,cells
R13679 T26922 T26922 ROOT proven,proven
R13680 T26923 T26922 agent by,proven
R13681 T26924 T26926 det the,efficacy
R13682 T26830 T26827 conj osteoclasts,cells
R13683 T26925 T26926 amod clinical,efficacy
R13684 T26926 T26923 pobj efficacy,by
R13685 T26831 T26820 prep through,stimulate
R13686 T26927 T26926 prep of,efficacy
R13687 T26928 T26932 poss its,antigen
R13688 T26929 T26932 nmod blocker,antigen
R13689 T26832 T26833 det the,expression
R13690 T26930 T26932 nmod cytotoxic,antigen
R13691 T26931 T26932 amod T-cell-associated,antigen
R13692 T26932 T26927 pobj antigen,of
R13693 T26833 T26831 pobj expression,through
R13694 T26933 T26932 nummod 4,antigen
R13695 T26934 T26932 punct (,antigen
R13696 T26834 T26833 prep of,expression
R13697 T26935 T26932 appos CD152,antigen
R13698 T26936 T26932 punct ),antigen
R13699 T26937 T26938 punct -,IgG
R13700 T26835 T26836 compound cell,surface
R13701 T26836 T26837 compound surface,molecules
R13702 T26938 T26926 appos IgG,efficacy
R13703 T26939 T26938 prep in,IgG
R13704 T26940 T26941 compound RA,patients
R13705 T26837 T26834 pobj molecules,of
R13706 T26941 T26939 pobj patients,in
R13707 T26942 T26944 nmod [,]
R13708 T26838 T26837 cc and,molecules
R13709 T26943 T26944 nummod 23,]
R13710 T26944 T26938 conj ],IgG
R13711 T26945 T26922 punct .,proven
R13712 T26839 T26840 amod Th1,cytokines
R13715 T26840 T26837 conj cytokines,molecules
R13722 T26841 T26820 punct ",",stimulate
R13726 T26842 T26843 advmod thereby,contributing
R13730 T26843 T26820 advcl contributing,stimulate
R13734 T26844 T26843 prep to,contributing
R13738 T26845 T26848 preconj both,inflammation
R13742 T26846 T26848 det the,inflammation
R13746 T26847 T26848 amod chronic,inflammation
R13748 T26848 T26844 pobj inflammation,to
R13749 T26849 T26848 cc and,inflammation
R13751 T26850 T26852 det the,destruction
R13755 T26851 T26852 amod joint,destruction
R13759 T26852 T26848 conj destruction,inflammation
R13763 T26853 T26820 punct .,stimulate
R13767 T26854 T26858 nsubj CD4,require
R13774 T26855 T26857 nummod +,cells
R13775 T26856 T26857 compound T,cells
R13776 T26857 T26858 nsubj cells,require
R13777 T26858 T26858 ROOT require,require
R13781 T26859 T26860 nummod two,signals
R13784 T26860 T26858 dobj signals,require
R13789 T26861 T26863 aux to,activated
R13792 T26862 T26863 auxpass be,activated
R13796 T26863 T26860 relcl activated,signals
R13800 T26864 T26860 punct ;,signals
R13803 T26865 T26867 compound antigen,occupancy
R13808 T26866 T26867 compound receptor,occupancy
R13811 T26867 T26860 appos occupancy,signals
R13812 T26868 T26867 cc and,occupancy
R13815 T26869 T26870 amod CD28-mediated,costimulation
R13822 T26870 T26867 conj costimulation,occupancy
R13825 T26871 T26858 punct .,require
R13830 T26872 T26895 prep In,expressed
R13834 T26873 T26875 det the,lesion
R13837 T26874 T26875 compound ST,lesion
R13841 T26875 T26872 pobj lesion,In
R13844 T26876 T26895 punct ",",expressed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23917 816-819 Protein denotes IgG
T23916 650-665 Protein denotes CD28 engagement
T23915 543-552 Gene_expression denotes expressed
T23914 543-552 Gene_expression denotes expressed
T23913 543-552 Gene_expression denotes expressed
T23912 543-552 Gene_expression denotes expressed
T23911 502-523 Protein denotes MHC class II antigens
T23910 482-486 Protein denotes CD86
T23909 473-477 Protein denotes CD80
T23908 454-466 Protein denotes CD28 ligands
T23907 403-407 Protein denotes CD28
T23906 322-326 Protein denotes CD4+
T23905 90-94 Protein denotes CD4+
T23904 0-4 Protein denotes CD4+
R11398 T23908 T23912 themeOf CD28 ligands,expressed
R11399 T23909 T23913 themeOf CD80,expressed
R11400 T23910 T23914 themeOf CD86,expressed
R11401 T23911 T23915 themeOf MHC class II antigens,expressed

test3

Id Subject Object Predicate Lexical cue
T22259 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T22258 650-654 Protein denotes CD28
T22257 482-486 Protein denotes CD86
T22256 473-477 Protein denotes CD80
T22255 454-458 Protein denotes CD28
T22254 403-407 Protein denotes CD28
T22253 322-325 Protein denotes CD4
T22252 90-93 Protein denotes CD4
T22251 0-3 Protein denotes CD4
T22470 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T22469 655-665 Binding denotes engagement
T22468 650-654 Protein denotes CD28
T22467 543-552 Gene_expression denotes expressed
T22466 482-486 Protein denotes CD86
T22465 473-477 Protein denotes CD80
T22464 454-458 Protein denotes CD28
T22463 403-407 Protein denotes CD28
T22462 389-398 Binding denotes occupancy
T22461 322-325 Protein denotes CD4
T22460 90-93 Protein denotes CD4
T22459 0-3 Protein denotes CD4
R10990 T22465 T22467 themeOf CD80,expressed
R10991 T22466 T22467 themeOf CD86,expressed
R10992 T22468 T22469 themeOf CD28,engagement

testone

Id Subject Object Predicate Lexical cue
T21727 770-819 Protein denotes cytotoxic T-cell-associated antigen 4 (CD152)-IgG
T21726 650-654 Protein denotes CD28
T21725 482-486 Protein denotes CD86
T21724 473-477 Protein denotes CD80
T21723 454-458 Protein denotes CD28
T21722 403-407 Protein denotes CD28
T21721 322-325 Protein denotes CD4
T21720 90-93 Protein denotes CD4
T21719 0-3 Protein denotes CD4
T21927 655-665 Binding denotes engagement
T21926 543-552 Gene_expression denotes expressed
R10840 T21724 T21926 themeOf CD80,expressed
R10841 T21725 T21926 themeOf CD86,expressed
R10842 T21726 T21927 themeOf CD28,engagement