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PMC:1064873 / 20584-20820 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T17287 177-181 Protein denotes STAT
T17286 120-151 Protein denotes neutralizing anti-IL-6 antibody
T17285 7-11 Protein denotes CD4+

biosemtest

Id Subject Object Predicate Lexical cue
T17999 155-162 UMLS/C2587213 denotes control
T17989 163-171 UMLS/C0003241 denotes antibody
T17988 143-151 UMLS/C0003241 denotes antibody
T17986 0-6 UMLS/C0205307 denotes Normal
T17975 71-81 UMLS/C0332256 denotes containing
T17967 86-91 UMLS/C1151254 denotes serum
T17965 56-70 UMLS/C0010454 denotes culture medium
T17958 47-50 UMLS/C0439232 denotes min
T17957 155-162 UMLS/C0332298 denotes control
T17955 107-115 UMLS/C1705908 denotes patients
T17952 71-81 UMLS/C2700400 denotes containing
T17940 71-81 UMLS/C1549781 denotes containing
T17939 177-181 UMLS/C1366753 denotes STAT
T17934 0-6 UMLS/C2347086 denotes Normal
T17907 0-6 UMLS/C0439166 denotes Normal
T17902 155-162 UMLS/C0243148 denotes control
T17882 86-91 UMLS/C1550100 denotes serum
T17871 107-115 UMLS/C1550655 denotes patients
T17869 30-39 UMLS/C1439852 denotes incubated
T17864 155-162 UMLS/C1547100 denotes control
T17841 0-6 UMLS/C1873497 denotes Normal
T17823 163-171 UMLS/C1621287 denotes antibody
T17822 143-151 UMLS/C1621287 denotes antibody
T17818 97-103 UMLS/C1553875 denotes active
T17809 12-19 UMLS/C0039194 denotes T cells
T17793 155-162 UMLS/C1550141 denotes control
T17787 86-91 UMLS/C0229671 denotes serum
T17782 177-181 UMLS/C1548425 denotes STAT
T17767 86-91 UMLS/C1546774 denotes serum
T17760 47-50 UMLS/C1552937 denotes min
T17644 214-235 UMLS/C0949466 denotes western blot analysis
T17641 107-115 UMLS/C0030705 denotes patients
T17623 177-181 UMLS/C1335960 denotes STAT
T17619 107-115 UMLS/C1578479 denotes patients
T17617 177-181 UMLS/C1420304 denotes STAT
T17614 107-115 UMLS/C1578483 denotes patients
T17611 107-115 UMLS/C1578480 denotes patients
T17608 107-115 UMLS/C1578481 denotes patients
T17605 107-115 UMLS/C1578486 denotes patients
T17601 107-115 UMLS/C1578484 denotes patients
T17598 107-115 UMLS/C1578485 denotes patients
T17596 163-171 UMLS/C0021027 denotes antibody
T17595 143-151 UMLS/C0021027 denotes antibody
T17585 97-103 UMLS/C1561511 denotes active
T17580 97-103 UMLS/C1561512 denotes active
T17576 97-103 UMLS/C1561513 denotes active
T17554 97-103 UMLS/C0205177 denotes active
T17546 97-103 UMLS/C2347179 denotes active
T17528 0-6 UMLS/C1704701 denotes Normal
T17510 202-210 UMLS/C0332128 denotes examined
T17504 0-6 UMLS/C1550457 denotes Normal
T17497 97-103 UMLS/C1561510 denotes active
T17492 97-103 UMLS/C1561509 denotes active
T17488 97-103 UMLS/C1561508 denotes active
T17484 97-103 UMLS/C1561507 denotes active
T17480 182-197 UMLS/C0031715 denotes phosphorylation
T17476 0-6 UMLS/C1551394 denotes Normal
T17472 97-103 UMLS/C1547419 denotes active
T17466 155-162 UMLS/C1882979 denotes control
T17696 47-50 UMLS/C0702093 denotes min
T17694 177-181 UMLS/C0205548 denotes STAT
T17671 155-162 UMLS/C0009932 denotes control

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T18702 227-235 NN denotes analysis
T18701 222-226 NN denotes blot
T18700 214-221 JJ denotes western
T18699 211-213 IN denotes by
T18698 202-210 VB denotes examined
T18697 198-201 VB denotes was
T18696 182-197 NN denotes phosphorylation
T18695 177-181 NN denotes STAT
T18694 173-176 CC denotes and
T18693 171-172 -COMMA- denotes ,
T18692 163-171 NN denotes antibody
T18691 155-162 NN denotes control
T18690 152-154 CC denotes or
T18689 143-151 NN denotes antibody
T18688 133-142 JJ denotes anti-IL-6
T18687 120-132 VB denotes neutralizing
T18686 116-119 CC denotes and
T18685 107-115 NN denotes patients
T18684 104-106 NN denotes RA
T18683 97-103 JJ denotes active
T18682 92-96 IN denotes from
T18681 86-91 NN denotes serum
T18680 84-85 NN denotes %
T18679 82-84 CD denotes 30
T18678 71-81 VB denotes containing
T18677 64-70 NN denotes medium
T18676 56-63 NN denotes culture
T18675 51-55 IN denotes with
T18674 47-50 NN denotes min
T18673 44-46 CD denotes 20
T18672 40-43 IN denotes for
T18671 30-39 VB denotes incubated
T18670 25-29 RB denotes thus
T18669 20-24 VB denotes were
T18668 14-19 NN denotes cells
T18667 12-13 NN denotes T
T18666 7-11 JJ denotes CD4+
T18665 0-6 JJ denotes Normal
R9136 T18668 T18665 arg1Of cells,Normal
R9137 T18668 T18666 arg1Of cells,CD4+
R9138 T18668 T18667 arg1Of cells,T
R9139 T18668 T18669 arg1Of cells,were
R9140 T18668 T18671 arg2Of cells,incubated
R9141 T18668 T18687 arg1Of cells,neutralizing
R9142 T18671 T18670 arg1Of incubated,thus
R9143 T18671 T18672 arg1Of incubated,for
R9144 T18671 T18675 arg1Of incubated,with
R9145 T18671 T18686 arg1Of incubated,and
R9146 T18674 T18672 arg2Of min,for
R9147 T18674 T18673 arg1Of min,20
R9148 T18677 T18675 arg2Of medium,with
R9149 T18677 T18676 arg1Of medium,culture
R9150 T18677 T18678 arg1Of medium,containing
R9151 T18679 T18680 arg1Of 30,%
R9152 T18681 T18678 arg2Of serum,containing
R9153 T18681 T18679 arg1Of serum,30
R9154 T18681 T18682 arg1Of serum,from
R9155 T18685 T18682 arg2Of patients,from
R9156 T18685 T18683 arg1Of patients,active
R9157 T18685 T18684 arg1Of patients,RA
R9158 T18686 T18669 arg2Of and,were
R9159 T18686 T18694 arg1Of and,and
R9160 T18687 T18686 arg2Of neutralizing,and
R9161 T18689 T18690 arg1Of antibody,or
R9162 T18691 T18690 arg2Of control,or
R9163 T18692 T18687 arg2Of antibody,neutralizing
R9164 T18692 T18688 arg1Of antibody,anti-IL-6
R9165 T18692 T18689 arg1Of antibody,antibody
R9166 T18692 T18691 arg1Of antibody,control
R9167 T18694 T18693 arg1Of and,","
R9168 T18696 T18695 arg1Of phosphorylation,STAT
R9169 T18696 T18697 arg1Of phosphorylation,was
R9170 T18696 T18698 arg2Of phosphorylation,examined
R9171 T18698 T18694 arg2Of examined,and
R9172 T18698 T18697 arg2Of examined,was
R9173 T18702 T18698 arg1Of analysis,examined
R9174 T18702 T18699 arg2Of analysis,by
R9175 T18702 T18700 arg1Of analysis,western
R9176 T18702 T18701 arg1Of analysis,blot

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T18172 138-142 Protein denotes IL-6
T18171 7-10 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18429 7-10 http://www.uniprot.org/uniprot/P01730 denotes CD4
T18399 138-142 http://www.uniprot.org/uniprot/P05231 denotes IL-6

UBERON-AE

Id Subject Object Predicate Lexical cue
T17459 86-91 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T18022 182-197 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T18245 163-171 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T18244 143-151 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T18243 163-171 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T18242 143-151 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T18237 14-19 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T18231 163-171 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T18230 143-151 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T18209 138-142 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

sentences

Id Subject Object Predicate Lexical cue
T18012 0-236 Sentence denotes Normal CD4+ T cells were thus incubated for 20 min with culture medium containing 30% serum from active RA patients and neutralizing anti-IL-6 antibody or control antibody, and STAT phosphorylation was examined by western blot analysis.
T123 0-236 Sentence denotes Normal CD4+ T cells were thus incubated for 20 min with culture medium containing 30% serum from active RA patients and neutralizing anti-IL-6 antibody or control antibody, and STAT phosphorylation was examined by western blot analysis.

simple1

Id Subject Object Predicate Lexical cue
T18465 138-142 Protein denotes IL-6
T18464 7-10 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19826 138-142 Protein denotes IL-6
T19825 7-10 Protein denotes CD4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T18941 138-142 Protein denotes IL-6
T18940 7-10 Protein denotes CD4

DLUT931

Id Subject Object Predicate Lexical cue
T19469 138-142 Protein denotes IL-6
T19468 7-10 Protein denotes CD4

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19797 177-235 Phosphorylation denotes STAT phosphorylation was examined by western blot analysis
T19745 12-19 Entity denotes T cells
T19729 133-171 Entity denotes anti-IL-6 antibody or control antibody
T19778 0-10 Protein denotes Normal CD4
T19777 143-151 Entity denotes antibody
T19771 177-181 Protein denotes STAT
T19758 104-106 Protein denotes RA
R10036 T19771 T19797 themeOf STAT,STAT phosphorylation was examined by western blot analysis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19220 235-236 . denotes .
T19219 227-235 NN denotes analysis
T19218 222-226 NN denotes blot
T19217 214-221 JJ denotes western
T19216 211-213 IN denotes by
T19215 202-210 VBN denotes examined
T19214 198-201 VBD denotes was
T19213 182-197 NN denotes phosphorylation
T19212 177-181 NNP denotes STAT
T19211 173-176 CC denotes and
T19210 171-172 , denotes ,
T19209 163-171 NN denotes antibody
T19208 155-162 NN denotes control
T19207 152-154 CC denotes or
T19206 143-151 NN denotes antibody
T19205 133-142 JJ denotes anti-IL-6
T19204 120-132 VBG denotes neutralizing
T19203 116-119 CC denotes and
T19202 107-115 NNS denotes patients
T19201 104-106 NNP denotes RA
T19200 97-103 JJ denotes active
T19199 92-96 IN denotes from
T19198 86-91 NN denotes serum
T19197 84-85 NN denotes %
T19196 82-84 CD denotes 30
T19195 71-81 VBG denotes containing
T19194 64-70 NN denotes medium
T19193 56-63 NN denotes culture
T19192 51-55 IN denotes with
T19191 47-50 NN denotes min
T19190 44-46 CD denotes 20
T19189 40-43 IN denotes for
T19188 30-39 VBN denotes incubated
T19187 25-29 RB denotes thus
T19186 20-24 VBD denotes were
T19185 14-19 NNS denotes cells
T19184 12-13 NNP denotes T
T19183 10-11 CD denotes +
T19182 7-10 NNP denotes CD4
T19181 0-6 JJ denotes Normal
R9617 T19181 T19185 amod Normal,cells
R9618 T19182 T19185 compound CD4,cells
R9619 T19183 T19185 nummod +,cells
R9620 T19184 T19185 compound T,cells
R9621 T19185 T19188 nsubjpass cells,incubated
R9622 T19186 T19188 auxpass were,incubated
R9623 T19187 T19188 advmod thus,incubated
R9624 T19188 T19188 ROOT incubated,incubated
R9625 T19189 T19188 prep for,incubated
R9626 T19190 T19191 nummod 20,min
R9627 T19191 T19189 pobj min,for
R9628 T19192 T19191 prep with,min
R9629 T19193 T19194 compound culture,medium
R9630 T19194 T19195 nsubj medium,containing
R9631 T19195 T19192 pcomp containing,with
R9632 T19196 T19197 nummod 30,%
R9633 T19197 T19198 compound %,serum
R9634 T19198 T19195 dobj serum,containing
R9635 T19199 T19198 prep from,serum
R9636 T19200 T19202 amod active,patients
R9637 T19201 T19202 compound RA,patients
R9638 T19202 T19199 pobj patients,from
R9639 T19203 T19195 cc and,containing
R9640 T19204 T19195 conj neutralizing,containing
R9641 T19205 T19206 amod anti-IL-6,antibody
R9642 T19206 T19204 dobj antibody,neutralizing
R9643 T19207 T19206 cc or,antibody
R9644 T19208 T19209 compound control,antibody
R9645 T19209 T19206 conj antibody,antibody
R9646 T19210 T19204 punct ",",neutralizing
R9647 T19211 T19204 cc and,neutralizing
R9648 T19212 T19213 compound STAT,phosphorylation
R9649 T19213 T19215 nsubjpass phosphorylation,examined
R9650 T19214 T19215 auxpass was,examined
R9651 T19215 T19188 advcl examined,incubated
R9652 T19216 T19215 agent by,examined
R9653 T19217 T19219 amod western,analysis
R9654 T19218 T19219 compound blot,analysis
R9655 T19219 T19216 pobj analysis,by
R9656 T19220 T19215 punct .,examined

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T18339 182-197 Phosphorylation denotes phosphorylation
T18338 120-132 Positive_regulation denotes neutralizing
T18337 177-181 Protein denotes STAT
T18336 133-171 Protein denotes anti-IL-6 antibody or control antibody
T18335 7-10 Protein denotes CD4
R8931 T18336 T18338 themeOf anti-IL-6 antibody or control antibody,neutralizing
R8932 T18337 T18339 themeOf STAT,phosphorylation

test3

Id Subject Object Predicate Lexical cue
T17402 182-197 Phosphorylation denotes phosphorylation
T17401 138-142 Protein denotes IL-6
T17400 7-10 Protein denotes CD4
T17336 138-142 Protein denotes IL-6
T17335 7-10 Protein denotes CD4

testone

Id Subject Object Predicate Lexical cue
T17245 182-197 Phosphorylation denotes phosphorylation
T17203 138-142 Protein denotes IL-6
T17202 7-10 Protein denotes CD4