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PMC:1064873 / 18924-19077 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T15452 98-103 Protein denotes STAT3
T15451 13-18 Protein denotes STAT3

biosemtest

Id Subject Object Predicate Lexical cue
T15851 93-97 UMLS/C0323983 denotes this
T15718 80-88 UMLS/C1578479 denotes patients
T15713 80-88 UMLS/C1578483 denotes patients
T15711 80-88 UMLS/C1578480 denotes patients
T15709 80-88 UMLS/C1578481 denotes patients
T15707 80-88 UMLS/C1578486 denotes patients
T15705 80-88 UMLS/C1578484 denotes patients
T15700 80-88 UMLS/C1578485 denotes patients
T15683 49-57 UMLS/C0370215 denotes isolated
T15676 80-88 UMLS/C1550655 denotes patients
T15659 98-103 UMLS/C0253050 denotes STAT3
T15658 13-18 UMLS/C0253050 denotes STAT3
T15634 49-57 UMLS/C0205409 denotes isolated
T15612 61-71 UMLS/C0039215 denotes CD4+ cells
T15591 104-119 UMLS/C0031715 denotes phosphorylation
T15575 3-11 UMLS/C1979874 denotes contrast
T15823 49-57 UMLS/C1548221 denotes isolated
T15802 80-88 UMLS/C1705908 denotes patients
T15752 49-57 UMLS/C1764827 denotes isolated
T15751 145-152 UMLS/C1292428 denotes 6 hours
T15748 139-144 UMLS/C0547043 denotes up to
T15745 49-57 UMLS/C1546680 denotes isolated
T15744 80-88 UMLS/C0030705 denotes patients
T15731 98-103 UMLS/C1367307 denotes STAT3
T15730 13-18 UMLS/C1367307 denotes STAT3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16334 147-152 NN denotes hours
T16333 145-146 CD denotes 6
T16332 142-144 TO denotes to
T16331 139-141 IN denotes up
T16330 135-138 IN denotes for
T16329 124-134 JJ denotes detectable
T16328 120-123 VB denotes was
T16327 104-119 NN denotes phosphorylation
T16326 98-103 NN denotes STAT3
T16325 93-97 DT denotes this
T16324 89-92 CC denotes and
T16323 80-88 NN denotes patients
T16322 77-79 NN denotes RA
T16321 72-76 IN denotes from
T16320 66-71 NN denotes cells
T16319 61-65 JJ denotes CD4+
T16318 58-60 NN denotes PB
T16317 49-57 VB denotes isolated
T16316 41-48 RB denotes freshly
T16315 38-40 IN denotes in
T16314 23-37 VB denotes phosphorylated
T16313 19-22 VB denotes was
T16312 13-18 NN denotes STAT3
T16311 11-12 -COMMA- denotes ,
T16310 3-11 NN denotes contrast
T16309 0-2 IN denotes In
R8117 T16310 T16309 arg2Of contrast,In
R8118 T16312 T16313 arg1Of STAT3,was
R8119 T16312 T16314 arg2Of STAT3,phosphorylated
R8120 T16314 T16309 arg1Of phosphorylated,In
R8121 T16314 T16311 arg1Of phosphorylated,","
R8122 T16314 T16313 arg2Of phosphorylated,was
R8123 T16314 T16315 arg1Of phosphorylated,in
R8124 T16314 T16324 arg1Of phosphorylated,and
R8125 T16317 T16316 arg1Of isolated,freshly
R8126 T16320 T16315 arg2Of cells,in
R8127 T16320 T16317 arg1Of cells,isolated
R8128 T16320 T16318 arg1Of cells,PB
R8129 T16320 T16319 arg1Of cells,CD4+
R8130 T16320 T16321 arg1Of cells,from
R8131 T16323 T16321 arg2Of patients,from
R8132 T16323 T16322 arg1Of patients,RA
R8133 T16327 T16325 arg1Of phosphorylation,this
R8134 T16327 T16326 arg1Of phosphorylation,STAT3
R8135 T16327 T16328 arg1Of phosphorylation,was
R8136 T16327 T16329 arg1Of phosphorylation,detectable
R8137 T16328 T16324 arg2Of was,and
R8138 T16328 T16330 arg1Of was,for
R8139 T16329 T16328 arg2Of detectable,was
R8140 T16333 T16331 arg1Of 6,up
R8141 T16333 T16332 arg1Of 6,to
R8142 T16334 T16330 arg2Of hours,for
R8143 T16334 T16333 arg1Of hours,6

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T15974 98-103 Protein denotes STAT3
T15973 61-64 Protein denotes CD4
T15972 13-18 Protein denotes STAT3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16152 61-64 http://www.uniprot.org/uniprot/P01730 denotes CD4
T16142 98-103 http://www.uniprot.org/uniprot/P40763 denotes STAT3
T16141 13-18 http://www.uniprot.org/uniprot/P40763 denotes STAT3

GO-BP

Id Subject Object Predicate Lexical cue
T15866 104-119 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T16005 66-71 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T15857 0-153 Sentence denotes In contrast, STAT3 was phosphorylated in freshly isolated PB CD4+ cells from RA patients and this STAT3 phosphorylation was detectable for up to 6 hours.
T114 0-153 Sentence denotes In contrast, STAT3 was phosphorylated in freshly isolated PB CD4+ cells from RA patients and this STAT3 phosphorylation was detectable for up to 6 hours.

simple1

Id Subject Object Predicate Lexical cue
T16177 98-103 Protein denotes STAT3
T16176 61-64 Protein denotes CD4
T16175 13-18 Protein denotes STAT3

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17072 23-37 Phosphorylation denotes phosphorylated
T17071 104-119 Phosphorylation denotes phosphorylation
T17041 98-103 Protein denotes STAT3
T17040 61-64 Protein denotes CD4
T17039 13-18 Protein denotes STAT3
R8693 T17039 T17072 themeOf STAT3,phosphorylated
R8694 T17041 T17071 themeOf STAT3,phosphorylation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16448 98-103 Protein denotes STAT3
T16447 61-64 Protein denotes CD4
T16446 13-18 Protein denotes STAT3
T16479 23-37 Phosphorylation denotes phosphorylated
T16478 104-119 Phosphorylation denotes phosphorylation
R8255 T16446 T16479 themeOf STAT3,phosphorylated
R8256 T16448 T16478 themeOf STAT3,phosphorylation

DLUT931

Id Subject Object Predicate Lexical cue
T16765 98-103 Protein denotes STAT3
T16764 61-64 Protein denotes CD4
T16763 13-18 Protein denotes STAT3
T16798 104-119 Phosphorylation denotes phosphorylation
T16797 23-37 Phosphorylation denotes phosphorylated
R8549 T16763 T16797 themeOf STAT3,phosphorylated
R8550 T16765 T16798 themeOf STAT3,phosphorylation

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17014 93-119 Phosphorylation denotes this STAT3 phosphorylation
T17008 0-71 Phosphorylation denotes In contrast, STAT3 was phosphorylated in freshly isolated PB CD4+ cells
T17000 58-60 Protein denotes PB
T16957 98-103 Protein denotes STAT3
T16998 41-71 Entity denotes freshly isolated PB CD4+ cells
T16971 13-18 Protein denotes STAT3
T16964 77-79 Protein denotes RA
R8655 T16957 T17014 themeOf STAT3,this STAT3 phosphorylation
R8662 T16971 T17008 themeOf STAT3,"In contrast, STAT3 was phosphorylated in freshly isolated PB CD4+ cells"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16643 152-153 . denotes .
T16642 147-152 NNS denotes hours
T16641 145-146 CD denotes 6
T16640 142-144 TO denotes to
T16639 139-141 RB denotes up
T16638 135-138 IN denotes for
T16637 124-134 JJ denotes detectable
T16636 120-123 VBD denotes was
T16635 104-119 NN denotes phosphorylation
T16634 98-103 CD denotes STAT3
T16633 93-97 DT denotes this
T16632 89-92 CC denotes and
T16631 80-88 NNS denotes patients
T16630 77-79 NNP denotes RA
T16629 72-76 IN denotes from
T16628 66-71 NNS denotes cells
T16627 64-65 VBD denotes +
T16626 61-64 NNP denotes CD4
T16625 58-60 NNP denotes PB
T16624 49-57 VBN denotes isolated
T16623 41-48 RB denotes freshly
T16622 38-40 IN denotes in
T16621 23-37 VBN denotes phosphorylated
T16620 19-22 VBD denotes was
T16619 13-18 NNP denotes STAT3
T16618 11-12 , denotes ,
T16617 3-11 NN denotes contrast
T16616 0-2 IN denotes In
R8404 T16616 T16621 prep In,phosphorylated
R8405 T16617 T16616 pobj contrast,In
R8406 T16618 T16621 punct ",",phosphorylated
R8407 T16619 T16621 nsubjpass STAT3,phosphorylated
R8408 T16620 T16621 auxpass was,phosphorylated
R8409 T16621 T16621 ROOT phosphorylated,phosphorylated
R8410 T16622 T16621 prep in,phosphorylated
R8411 T16623 T16624 advmod freshly,isolated
R8412 T16624 T16626 amod isolated,CD4
R8413 T16625 T16626 compound PB,CD4
R8414 T16626 T16622 pobj CD4,in
R8415 T16627 T16628 amod +,cells
R8416 T16628 T16636 nsubj cells,was
R8417 T16629 T16628 prep from,cells
R8418 T16630 T16631 compound RA,patients
R8419 T16631 T16629 pobj patients,from
R8420 T16632 T16628 cc and,cells
R8421 T16633 T16635 det this,phosphorylation
R8422 T16634 T16635 nummod STAT3,phosphorylation
R8423 T16635 T16628 conj phosphorylation,cells
R8424 T16636 T16621 ccomp was,phosphorylated
R8425 T16637 T16636 acomp detectable,was
R8426 T16638 T16636 prep for,was
R8427 T16639 T16641 quantmod up,6
R8428 T16640 T16641 quantmod to,6
R8429 T16641 T16642 nummod 6,hours
R8430 T16642 T16638 pobj hours,for
R8431 T16643 T16636 punct .,was

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16092 124-134 Positive_regulation denotes detectable
T16091 104-119 Phosphorylation denotes phosphorylation
T16090 23-37 Phosphorylation denotes phosphorylated
T16089 98-103 Protein denotes STAT3
T16088 58-64 Protein denotes PB CD4
T16087 13-18 Protein denotes STAT3
R7983 T16087 T16090 themeOf STAT3,phosphorylated
R7984 T16089 T16091 themeOf STAT3,phosphorylation
R7985 T16091 T16092 themeOf phosphorylation,detectable

test3

Id Subject Object Predicate Lexical cue
T15540 104-119 Phosphorylation denotes phosphorylation
T15539 98-103 Protein denotes STAT3
T15538 61-64 Protein denotes CD4
T15537 23-37 Phosphorylation denotes phosphorylated
T15536 13-18 Protein denotes STAT3
T15487 98-103 Protein denotes STAT3
T15486 61-64 Protein denotes CD4
T15485 13-18 Protein denotes STAT3
R7866 T15536 T15537 themeOf STAT3,phosphorylated
R7867 T15539 T15540 themeOf STAT3,phosphorylation

testone

Id Subject Object Predicate Lexical cue
T15415 104-119 Phosphorylation denotes phosphorylation
T15414 23-37 Phosphorylation denotes phosphorylated
T15383 98-103 Protein denotes STAT3
T15382 61-64 Protein denotes CD4
T15381 13-18 Protein denotes STAT3
R7814 T15381 T15414 themeOf STAT3,phosphorylated
R7815 T15383 T15415 themeOf STAT3,phosphorylation